ID	status	mRNA_log2FC	RPF_log2FC	Name	TF	GO	KEGG	Nr	wt_1	wt_2	h3_1	h3_2
AT1G07260	homodirectional	-1.8236245481263984	-1.5923560628481055	AT1G07260	--	GO:0004134,4-alpha-glucanotransferase activity; GO:0008194,UDP-glycosyltransferase activity; GO:0010113,negative regulation of systemic acquired resistance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity;	--	NP_172206.1 UDP-glucosyl transferase 71C3 [Arabidopsis thaliana]	20	9	2	4
AT1G19780	homodirectional	1.179083180515525	1.2915980492979413	AT1G19780	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_173408.2 cyclic nucleotide gated channel 8 [Arabidopsis thaliana]	4	11	19	7
AT1G49490	homodirectional	-1.4757142192786172	-1.0555553567967992	AT1G49490	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_001320463.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	69	73	17	27
AT1G53480	homodirectional	-1.4787174487018375	-2.014045053341304	AT1G53480	--	GO:0008150,biological_process;	--	NP_001185210.1 mto 1 responding down 1 [Arabidopsis thaliana]	22	25	6	2
AT1G67330	homodirectional	1.2759202376500542	1.2518267844989206	AT1G67330	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006479,protein methylation; GO:0009827,plant-type cell wall modification; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0030775,glucuronoxylan 4-O-methyltransferase activity; GO:0045492,xylan biosynthetic process; GO:0071554,cell wall organization or biogenesis;	--	NP_176901.1 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]	11	3	15	7
AT1G67870	homodirectional	-1.2431108702264588	-1.4508734249800177	AT1G67870	--	GO:0008150,biological_process;	--	KAG7658789.1 hypothetical protein ISN44_As01g057450 [Arabidopsis suecica]	700	580	134	168
AT1G68940	homodirectional	-1.068680285455804	-1.0937670528266714	AT1G68940	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001319353.1 Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana]	14	6	3	3
AT1G72280	homodirectional	-1.8301584713784889	-1.1319428270316263	AT1G72280	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0015035,protein-disulfide reductase activity; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016972,thiol oxidase activity; GO:0034975,protein folding in endoplasmic reticulum; GO:0071949,FAD binding;	ERO1L; ERO1-like protein alpha [EC:1.8.4.-]; K10950;	NP_177372.1 endoplasmic reticulum oxidoreductins 1 [Arabidopsis thaliana]	189	131	43	51
AT2G03630	homodirectional	1.486341978910953	1.123467185129733	AT2G03630	--	--	--	NP_001318192.1 suppressor SRP40-like protein [Arabidopsis thaliana]	9	7	13	10
AT2G30830	homodirectional	-1.118203467840868	-1.4001746755600275	AT2G30830	--	GO:0008150,biological_process; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_180641.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	15	15	7	1
AT2G35658	homodirectional	-1.9941616589089712	-1.816636710092048	AT2G35658	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_001118445.1 transmembrane protein [Arabidopsis thaliana]	17	9	4	1
AT2G36090	homodirectional	1.284407545344614	1.0555263420563008	AT2G36090	--	GO:0005515,protein binding; GO:0016020,membrane;	--	NP_181153.1 F-box family protein [Arabidopsis thaliana]	10	5	15	6
AT2G38470	homodirectional	1.2103630376577237	1.1032011877211811	AT2G38470	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009627,systemic acquired resistance; GO:0009651,response to salt stress; GO:0010120,camalexin biosynthetic process; GO:0010508,positive regulation of autophagy; GO:0034605,cellular response to heat; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0070370,cellular heat acclimation;	WRKY33; WRKY transcription factor 33; K13424;	NP_181381.2 WRKY DNA-binding protein 33 [Arabidopsis thaliana]	13	15	22	18
AT2G43560	homodirectional	-1.0572838739848047	-1.1925023848459535	AT2G43560	--	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016853,isomerase activity; GO:0031977,thylakoid lumen;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_181884.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	123	129	45	29
AT2G44140	homodirectional	1.374057233853635	1.1476659075931681	AT2G44140	--	GO:0004175,endopeptidase activity; GO:0005575,cellular_component; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity;	ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342;	NP_001324765.1 Peptidase family C54 protein [Arabidopsis thaliana]	90	68	152	83
AT2G44360	homodirectional	2.0382432017053027	1.7116868914199568	AT2G44360	--	GO:0005575,cellular_component;	--	NP_181964.1 ecotropic viral integration site protein [Arabidopsis thaliana]	17	16	37	34
AT3G01990	homodirectional	1.2312288081826095	1.4820767210670591	AT3G01990	--	GO:0005515,protein binding; GO:0016597,amino acid binding;	--	NP_001327455.1 ACT domain repeat 6 [Arabidopsis thaliana]	7	5	7	14
AT3G16240	homodirectional	-1.0537873968658025	-1.2815958531714076	AT3G16240	--	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009705,plant-type vacuole membrane; GO:0009941,chloroplast envelope; GO:0015200,methylammonium transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042802,identical protein binding; GO:0042807,central vacuole; GO:0055085,transmembrane transport; GO:0072489,methylammonium transmembrane transport;	--	NP_188245.1 delta tonoplast integral protein [Arabidopsis thaliana]	2617	2251	739	584
AT3G25490	homodirectional	-1.582493527728936	-1.0481597521133836	AT3G25490	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_189176.1 Protein kinase family protein [Arabidopsis thaliana]	22	14	4	7
AT3G48080	homodirectional	-2.202869948256778	-1.476454625279522	AT3G48080	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0016787,hydrolase activity; GO:0106093,EDS1 disease-resistance complex;	EDS1; enhanced disease susceptibility 1 protein; K18875;	NP_190391.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	36	6	8	2
AT3G52160	homodirectional	-1.6881886900135732	-1.1968820313599795	AT3G52160	--	GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	ABK28598.1 unknown, partial [Arabidopsis thaliana]	141	127	41	36
AT3G54890	homodirectional	-1.282790832778837	-1.03506362538564	AT3G54890	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA1; light-harvesting complex I chlorophyll a/b binding protein 1; K08907;	NP_191049.1 chlorophyll a-b binding protein 6 [Arabidopsis thaliana]	2453	2497	891	713
AT3G63390	homodirectional	1.2190450538031583	1.0269618029893293	AT3G63390	--	GO:0009536,plastid;	--	NP_567146.1 hypothetical protein AT3G63390 [Arabidopsis thaliana]	8	8	14	8
AT4G00850	homodirectional	1.1660360048080345	1.9066647014912073	AT4G00850	--	GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008283,cell population proliferation; GO:0016020,membrane; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048366,leaf development; GO:0051301,cell division;	--	NP_567194.1 GRF1-interacting factor 3 [Arabidopsis thaliana]	8	2	8	15
AT4G14050	homodirectional	-3.150962251214652	-1.4634025163819866	AT4G14050	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0016554,cytidine to uridine editing;	--	NP_001329428.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	42	14	7	6
AT4G15260	homodirectional	-1.9123934187853997	-1.834853061510474	AT4G15260	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_193261.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	16	22	3	4
AT4G30490	homodirectional	1.402602747563192	1.1539550296969034	AT4G30490	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity;	--	NP_567847.1 AFG1-like ATPase family protein [Arabidopsis thaliana]	30	51	95	32
AT5G10600	homodirectional	-2.855392216683833	-1.046755989034985	AT5G10600	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_196622.2 cytochrome P450, family 81, subfamily K, polypeptide 2 [Arabidopsis thaliana]	10	17	6	3
AT5G60250	homodirectional	1.027551265449763	2.051775024968742	AT5G60250	--	GO:0000151,ubiquitin ligase complex; GO:0000209,protein polyubiquitination; GO:0003676,nucleic acid binding; GO:0004523,RNA-DNA hybrid ribonuclease activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	--	NP_200833.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	34	44	126	91
AT1G17600	opposite change	-1.4392049919018646	1.2124079820911635	AT1G17600	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043531,ADP binding; GO:0045088,regulation of innate immune response;	--	NP_173203.2 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	16	1	10	14
AT1G23300	opposite change	1.2994747795259398	-1.1427034669822689	AT1G23300	--	GO:0005774,vacuolar membrane; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_173744.1 MATE efflux family protein [Arabidopsis thaliana]	17	4	3	3
AT1G54040	opposite change	-1.6390525730897345	1.3888901893542922	AT1G54040	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0042742,defense response to bacterium; GO:0050790,regulation of catalytic activity; GO:0080028,nitrile biosynthetic process;	--	NP_175806.3 epithiospecifier protein [Arabidopsis thaliana]	30	43	86	45
AT1G74550	opposite change	1.6827817765461228	-1.4865047707826329	AT1G74550	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity;	CYP98A9; cytochrome P450 family 98 subfamily A polypeptide 9 [EC:1.14.13.-]; K23662;	NP_177595.1 cytochrome P450, family 98, subfamily A, polypeptide 9 [Arabidopsis thaliana]	458	372	113	83
AT1G78130	opposite change	-1.0424677549895986	1.7008302565035007	AT1G78130	--	GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_177937.1 Major facilitator superfamily protein [Arabidopsis thaliana]	3	9	17	10
AT2G38780	opposite change	1.925513106975676	-1.4135299386542974	AT2G38780	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016020,membrane;	--	NP_001324243.1 cytochrome C oxidase subunit [Arabidopsis thaliana]	45	27	12	6
AT2G41940	opposite change	-1.0823449578330993	1.3204886712730664	AT2G41940	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010026,trichome differentiation; GO:0010090,trichome morphogenesis; GO:0030154,cell differentiation; GO:0046872,metal ion binding;	--	NP_181725.1 zinc finger protein 8 [Arabidopsis thaliana]	9	7	13	13
AT2G44790	opposite change	1.0132354173661071	-1.2477277059734166	AT2G44790	--	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding;	--	NP_182006.1 uclacyanin 2 [Arabidopsis thaliana]	49	44	15	11
AT2G44850	opposite change	1.9349917912144512	-1.092733137982522	AT2G44850	--	GO:0005739,mitochondrion;	--	NP_182012.1 hypothetical protein AT2G44850 [Arabidopsis thaliana]	20	34	9	8
AT3G47580	opposite change	1.1740040275945998	-1.8706745468511763	AT3G47580	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_190342.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	16	6	3	1
AT3G56030	opposite change	-1.0258639696647256	1.6507056933808637	AT3G56030	--	GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_191162.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	7	5	15	10
AT4G14100	opposite change	1.0084420080548595	-1.1953291969185806	AT4G14100	--	GO:0000325,plant-type vacuole; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0099503,secretory vesicle;	--	NP_567420.1 transferases, transferring glycosyl groups [Arabidopsis thaliana]	70	54	33	5
AT4G34560	opposite change	8.584649387288803	-1.3145871179841242	AT4G34560	--	GO:0016020,membrane;	--	NP_195182.2 transmembrane protein [Arabidopsis thaliana]	18	21	3	7
AT4G39780	opposite change	1.0025034721011516	-1.0668592768636211	AT4G39780	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding;	--	NP_195688.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	14	22	9	3
AT5G37490	opposite change	4.139217183101774	-1.8712197408622853	AT5G37490	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity;	--	NP_198565.1 ARM repeat superfamily protein [Arabidopsis thaliana]	9	16	5	0
AT1G02110	transcription only	-1.1328403062881045	0.5816131710566327	AT1G02110	--	--	--	NP_171713.2 bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]	96	52	84	61
AT1G03140	transcription only	-3.368070099807457	0.3508042815452916	AT1G03140	--	GO:0000350,generation of catalytic spliceosome for second transesterification step; GO:0000380,alternative mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071021,U2-type post-spliceosomal complex; GO:0110165,cellular anatomical entity;	PRPF18, PRP18; pre-mRNA-splicing factor 18; K12817;	NP_563676.1 splicing factor Prp18 family protein [Arabidopsis thaliana]	188	172	165	138
AT1G03730	transcription only	1.143833823770539	-0.5262948409865126	AT1G03730	--	GO:0016020,membrane;	--	NP_563690.1 pyrroline-5-carboxylate reductase [Arabidopsis thaliana]	28	15	14	6
AT1G03750	transcription only	2.0658540984561986	0.03490219629399271	AT1G03750	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0006974,cellular response to DNA damage stimulus; GO:0016787,hydrolase activity; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_171871.2 switch 2 [Arabidopsis thaliana]	19	22	21	8
AT1G05560	transcription only	-1.0808156286548618	-0.04418538424755097	AT1G05560	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005856,cytoskeleton; GO:0008194,UDP-glycosyltransferase activity; GO:0009524,phragmoplast; GO:0009751,response to salicylic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0046482,para-aminobenzoic acid metabolic process; GO:0047215,indole-3-acetate beta-glucosyltransferase activity; GO:0048471,perinuclear region of cytoplasm; GO:0080002,UDP-glucose:4-aminobenzoate acylglucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_001320882.1 UDP-glucosyltransferase 75B1 [Arabidopsis thaliana]	40	44	29	25
AT1G06000	transcription only	-1.0580173019695096	-0.5824292231980727	AT1G06000	--	GO:0005576,extracellular region; GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0103077,quercetin 3-glucoside 7-O-rhamnosyltransferase activity; GO:0103078,quercetin 3-rhamnoside 7-O-rhamnosyltransferase activity;	--	NP_563756.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	780	697	367	286
AT1G06070	transcription only	1.1331053467460528	-0.07296473673914014	AT1G06070	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_172097.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]	91	68	64	37
AT1G06250	transcription only	-1.1971494915741276	-0.1335188616387536	AT1G06250	--	GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity;	--	NP_172115.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	35	39	20	24
AT1G06660	transcription only	1.3610559851193755	0.12986498498483143	AT1G06660	--	GO:0006355,regulation of DNA-templated transcription; GO:0007142,male meiosis II; GO:0009556,microsporogenesis; GO:0051321,meiotic cell cycle;	--	NP_172151.2 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit [Arabidopsis thaliana]	21	25	21	13
AT1G06670	transcription only	-2.630296585589261	0.4043187055131579	AT1G06670	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0032508,DNA duplex unwinding;	DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]; K14442;	NP_172152.1 nuclear DEIH-boxhelicase [Arabidopsis thaliana]	305	300	275	252
AT1G06680	transcription only	-1.3947953203710095	-0.46203927321069616	AT1G06680	--	GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005576,extracellular region; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0019684,photosynthesis, light reaction; GO:0019898,extrinsic component of membrane; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0048046,apoplast; GO:1901149,salicylic acid binding;	psbP; photosystem II oxygen-evolving enhancer protein 2; K02717;	NP_172153.1 photosystem II subunit P-1 [Arabidopsis thaliana]	5038	4532	2627	1982
AT1G07050	transcription only	-1.8893736331499071	0.9727288156977988	AT1G07050	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_001320785.1 CCT motif family protein [Arabidopsis thaliana]	47	51	77	52
AT1G07510	transcription only	1.2813395240238283	-0.13319590963648795	AT1G07510	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005745,m-AAA complex; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0034982,mitochondrial protein processing; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	AFG3; AFG3 family protein [EC:3.4.24.-]; K08956;	NP_172231.2 FTSH protease 10 [Arabidopsis thaliana]	466	433	309	235
AT1G07720	transcription only	-1.065818114191479	-0.39394946492973487	AT1G07720	--	GO:0005783,endoplasmic reticulum; GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_001322003.1 3-ketoacyl-CoA synthase 3 [Arabidopsis thaliana]	310	219	135	127
AT1G08460	transcription only	-1.9779203181335585	0.06990772731729009	AT1G08460	--	GO:0004407,histone deacetylase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_001320319.1 histone deacetylase 8 [Arabidopsis thaliana]	86	65	62	43
AT1G08560	transcription only	-1.5679555562825984	-0.21993973668251865	AT1G08560	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0006887,exocytosis; GO:0006906,vesicle fusion; GO:0007049,cell cycle; GO:0009504,cell plate; GO:0009506,plasmodesma; GO:0009524,phragmoplast; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0048278,vesicle docking; GO:0051301,cell division; GO:0061025,membrane fusion; GO:0110165,cellular anatomical entity;	STX1B_2_3; syntaxin 1B/2/3; K08486;	NP_172332.1 syntaxin of plants 111 [Arabidopsis thaliana]	397	394	253	198
AT1G08840	transcription only	1.4032536106631126	0.15380297740126803	AT1G08840	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003824,catalytic activity; GO:0004386,helicase activity; GO:0004518,nuclease activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0006259,DNA metabolic process; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0008152,metabolic process; GO:0010073,meristem maintenance; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017108,5'-flap endonuclease activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0033567,DNA replication, Okazaki fragment processing; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0071932,replication fork reversal; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	DNA2; DNA replication ATP-dependent helicase Dna2 [EC:3.6.4.12]; K10742;	NP_001184943.1 DNA replication helicase [Arabidopsis thaliana]	34	37	21	30
AT1G09420	transcription only	-1.2308768564302217	0.2598702088513619	AT1G09420	--	GO:0004345,glucose-6-phosphate dehydrogenase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050661,NADP binding;	G6PD, zwf; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]; K00036;	NP_563844.1 glucose-6-phosphate dehydrogenase 4 [Arabidopsis thaliana]	9	10	13	3
AT1G09430	transcription only	-1.0210305634860617	-0.2712133026785179	AT1G09430	--	GO:0000166,nucleotide binding; GO:0003878,ATP citrate synthase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006085,acetyl-CoA biosynthetic process; GO:0006629,lipid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity;	ACLY; ATP citrate (pro-S)-lyase [EC:2.3.3.8]; K01648;	NP_172414.1 ATP-citrate lyase A-3 [Arabidopsis thaliana]	195	206	129	93
AT1G09800	transcription only	-1.0020639025670224	-0.8308516707269181	AT1G09800	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0106029,tRNA pseudouridine synthase activity;	--	NP_001322359.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	44	27	14	12
AT1G10500	transcription only	1.0805674149452262	-0.6110489575351318	AT1G10500	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0030674,protein-macromolecule adaptor activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding;	--	NP_172520.1 chloroplast-localized ISCA-like protein [Arabidopsis thaliana]	202	210	104	76
AT1G10760	transcription only	-2.2374359892494144	0.38829538649844986	AT1G10760	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009610,response to symbiotic fungus; GO:0009631,cold acclimation; GO:0009941,chloroplast envelope; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0050521,alpha-glucan, water dikinase activity; GO:0102216,maltodextrin water dikinase; GO:0102218,starch, H2O dikinase activity;	R1; alpha-glucan, water dikinase [EC:2.7.9.4]; K08244;	NP_001318975.1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein [Arabidopsis thaliana]	1123	1100	1121	818
AT1G11860	transcription only	-1.2144291477176552	-0.644096752056815	AT1G11860	--	GO:0003729,mRNA binding; GO:0004047,aminomethyltransferase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0006546,glycine catabolic process; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0022626,cytosolic ribosome; GO:0048046,apoplast;	gcvT, AMT; aminomethyltransferase [EC:2.1.2.10]; K00605;	NP_001318983.1 Glycine cleavage T-protein family [Arabidopsis thaliana]	1786	1513	815	586
AT1G12110	transcription only	-1.1403260117012628	0.11655307952827916	AT1G12110	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009414,response to water deprivation; GO:0009635,response to herbicide; GO:0009734,auxin-activated signaling pathway; GO:0010167,response to nitrate; GO:0010540,basipetal auxin transport; GO:0015112,nitrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0048527,lateral root development; GO:0048573,photoperiodism, flowering; GO:0055085,transmembrane transport;	--	NP_563899.1 nitrate transporter 1.1 [Arabidopsis thaliana]	65	68	65	33
AT1G12330	transcription only	-1.3623555821255495	-0.08783233856904187	AT1G12330	--	GO:0003674,molecular_function; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_172697.2 cyclin-dependent kinase-like protein [Arabidopsis thaliana]	111	114	75	65
AT1G12840	transcription only	1.36217919839765	-0.2043170262906376	AT1G12840	--	GO:0000221,vacuolar proton-transporting V-type ATPase, V1 domain; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009826,unidimensional cell growth; GO:0015078,proton transmembrane transporter activity; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C; K02148;	NP_563916.1 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) [Arabidopsis thaliana]	894	778	561	403
AT1G13150	transcription only	-1.777115707701245	-0.33841422538006954	AT1G13150	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172774.1 cytochrome P450, family 86, subfamily C, polypeptide 4 [Arabidopsis thaliana]	86	43	30	35
AT1G13330	transcription only	1.426140267639943	-0.5603640057823909	AT1G13330	--	GO:0000709,meiotic joint molecule formation; GO:0000794,condensed nuclear chromosome; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0006310,DNA recombination; GO:0007129,homologous chromosome pairing at meiosis; GO:0007131,reciprocal meiotic recombination; GO:0010774,meiotic strand invasion involved in reciprocal meiotic recombination; GO:0050790,regulation of catalytic activity; GO:0051026,chiasma assembly; GO:0051321,meiotic cell cycle; GO:0090304,nucleic acid metabolic process; GO:0120230,recombinase activator activity; GO:0120231,DNA recombinase auxiliary factor complex;	--	NP_172791.1 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [Arabidopsis thaliana]	12	7	8	1
AT1G13690	transcription only	1.2704785060993882	-0.33827491369762747	AT1G13690	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0008150,biological_process;	--	NP_563931.2 ATPase E1 [Arabidopsis thaliana]	216	162	106	90
AT1G14380	transcription only	1.324704190244674	0.00806937586890399	AT1G14380	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex;	--	NP_001031046.1 IQ-domain 28 [Arabidopsis thaliana]	126	141	106	74
AT1G14650	transcription only	3.6610348007412337	0.2234665285837715	AT1G14650	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005684,U2-type spliceosomal complex; GO:0005686,U2 snRNP; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0045292,mRNA cis splicing, via spliceosome; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3A1, SAP114; splicing factor 3A subunit 1; K12825;	AAF63169.1 T5E21.13 [Arabidopsis thaliana]	319	278	290	177
AT1G14890	transcription only	1.1085669269560487	-0.42649239617510887	AT1G14890	--	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity;	--	NP_563960.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]	107	143	77	49
AT1G15030	transcription only	1.5107483897550549	0.32120398856003446	AT1G15030	--	GO:0008150,biological_process;	--	NP_001320245.1 hypothetical protein (DUF789) [Arabidopsis thaliana]	53	76	70	40
AT1G15240	transcription only	1.9474133336160304	-0.07922205115897082	AT1G15240	--	GO:0005768,endosome; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding;	SNX13; sorting nexin-13; K17925;	NP_001319008.1 phox (PX) domain-containing protein [Arabidopsis thaliana]	88	91	49	61
AT1G15415	transcription only	-1.389514096746109	0.4031861308833056	AT1G15415	--	GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_172994.1 late embryogenesis abundant-like protein [Arabidopsis thaliana]	14	20	16	14
AT1G15700	transcription only	-1.2081409822604967	0.41265636543244594	AT1G15700	--	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009544,chloroplast ATP synthase complex; GO:0009579,thylakoid; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0030234,enzyme regulator activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0050790,regulation of catalytic activity; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; GO:2000067,regulation of root morphogenesis;	ATPF1G, atpG; F-type H+-transporting ATPase subunit gamma; K02115;	NP_173022.1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana]	40	39	35	34
AT1G15990	transcription only	-1.1547983312180174	0.1713985163881798	AT1G15990	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0090406,pollen tube;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_001319014.1 cyclic nucleotide gated channel 7 [Arabidopsis thaliana]	25	16	21	10
AT1G16750	transcription only	1.519291637346759	-0.10924602988959062	AT1G16750	--	--	--	NP_564005.2 GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]	87	67	47	46
AT1G17100	transcription only	-1.1780639357290963	-0.5640379253866021	AT1G17100	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0020037,heme binding; GO:0099503,secretory vesicle; GO:0110165,cellular anatomical entity;	--	NP_173153.1 SOUL heme-binding family protein [Arabidopsis thaliana]	308	263	174	87
AT1G17220	transcription only	-1.251488842106875	-0.3238327405668705	AT1G17220	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006412,translation; GO:0006413,translational initiation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_173165.1 Translation initiation factor 2, small GTP-binding protein [Arabidopsis thaliana]	663	526	339	285
AT1G17230	transcription only	-1.233701632096922	0.06282710585551164	AT1G17230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173166.2 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	38	35	31	20
AT1G18390	transcription only	1.9992717429224176	-0.4138661818016924	AT1G18390	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0030247,polysaccharide binding;	--	NP_173275.4 Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]	11	10	9	2
AT1G18640	transcription only	1.0280486095096324	-0.08100117137643355	AT1G18640	--	GO:0000096,sulfur amino acid metabolic process; GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0006563,L-serine metabolic process; GO:0006564,L-serine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016311,dephosphorylation; GO:0016787,hydrolase activity; GO:0036424,L-phosphoserine phosphatase activity; GO:0046872,metal ion binding; GO:0048364,root development;	serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3]; K01079;	NP_973858.1 3-phosphoserine phosphatase [Arabidopsis thaliana]	129	89	85	52
AT1G20340	transcription only	-1.2665898496542642	-0.8935301132939873	AT1G20340	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016020,membrane; GO:0017148,negative regulation of translation; GO:0019904,protein domain specific binding; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046028,electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding; GO:0055035,plastid thylakoid membrane; GO:0055070,copper ion homeostasis;	petE; plastocyanin; K02638;	NP_173459.1 Cupredoxin superfamily protein [Arabidopsis thaliana]	13581	11403	4456	4311
AT1G20400	transcription only	1.3073892579251525	0.03378259033293431	AT1G20400	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_173465.1 hypothetical protein (DUF1204) [Arabidopsis thaliana]	15	6	3	10
AT1G21640	transcription only	1.3413730611864252	-0.614875413791741	AT1G21640	--	GO:0000166,nucleotide binding; GO:0003951,NAD+ kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0006741,NADP biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019674,NAD metabolic process;	ppnK, NADK; NAD+ kinase [EC:2.7.1.23]; K00858;	NP_001185057.1 NAD kinase 2 [Arabidopsis thaliana]	150	120	58	57
AT1G21670	transcription only	-1.7171104453225374	-0.604722746893471	AT1G21670	--	GO:0099503,secretory vesicle;	--	NP_564146.1 DPP6 amino-terminal domain protein [Arabidopsis thaliana]	154	140	66	61
AT1G22400	transcription only	-2.332410841199785	-0.6894802037651008	AT1G22400	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0050403,trans-zeatin O-beta-D-glucosyltransferase activity; GO:0050502,cis-zeatin O-beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173656.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	164	113	59	53
AT1G22730	transcription only	-1.445763100308461	0.5133423941484621	AT1G22730	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009646,response to absence of light; GO:0043022,ribosome binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0090549,response to carbon starvation;	--	NP_173687.1 MA3 domain-containing protein [Arabidopsis thaliana]	72	58	77	47
AT1G22850	transcription only	1.5696837327853312	-0.5045217107704529	AT1G22850	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016020,membrane;	--	VYS46932.1 unnamed protein product [Arabidopsis thaliana]	78	57	43	21
AT1G22910	transcription only	-2.0262440878062145	-0.6732512960060271	AT1G22910	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0030154,cell differentiation;	--	NP_973888.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	92	83	37	35
AT1G23130	transcription only	-1.078096300217256	-0.38430495262120334	AT1G23130	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response;	--	NP_564190.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	394	365	209	175
AT1G23400	transcription only	2.4186341776661826	0.2653233987229358	AT1G23400	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:1990904,ribonucleoprotein complex;	--	NP_173754.2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]	156	165	151	107
AT1G24320	transcription only	1.0841061845211013	0.31519529326558704	AT1G24320	--	GO:0004573,Glc3Man9GlcNAc2 oligosaccharide glucosidase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005975,carbohydrate metabolic process; GO:0006487,protein N-linked glycosylation; GO:0008152,metabolic process; GO:0009311,oligosaccharide metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	MOGS; mannosyl-oligosaccharide glucosidase [EC:3.2.1.106]; K01228;	NP_173842.2 Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]	21	4	7	12
AT1G25400	transcription only	1.0928071474646597	0.4230693638491609	AT1G25400	--	GO:0016020,membrane;	--	NP_001185095.1 transmembrane protein [Arabidopsis thaliana]	7	10	7	8
AT1G26760	transcription only	1.0707002837612905	-0.26323269676396155	AT1G26760	--	GO:0005515,protein binding;	--	NP_173998.2 SET domain protein 35 [Arabidopsis thaliana]	25	48	22	19
AT1G27210	transcription only	-1.1519874196860482	0.11098077340297656	AT1G27210	--	GO:0005515,protein binding; GO:0005874,microtubule; GO:0008017,microtubule binding;	--	NP_564273.1 ARM repeat superfamily protein [Arabidopsis thaliana]	151	99	94	82
AT1G28190	transcription only	2.227104033552396	-0.5288776034557522	AT1G28190	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009620,response to fungus;	--	NP_174140.1 hypothetical protein AT1G28190 [Arabidopsis thaliana]	34	11	11	9
AT1G28610	transcription only	-1.578658263206404	0.8696985678280613	AT1G28610	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_973932.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	21	12	20	19
AT1G29330	transcription only	1.3347422767782868	0.4482547266028011	AT1G29330	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005801,cis-Golgi network; GO:0006621,protein retention in ER lumen; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0046923,ER retention sequence binding;	KDELR; ER lumen protein retaining receptor; K10949;	NP_564326.1 ER lumen protein retaining receptor family protein [Arabidopsis thaliana]	69	53	58	51
AT1G29380	transcription only	-1.0339011941229426	0.4669982539277427	AT1G29380	--	GO:0008150,biological_process;	--	NP_001322587.1 Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]	13	11	18	5
AT1G29910	transcription only	-2.4336208267740105	-0.3951949786914124	AT1G29910	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009750,response to fructose; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; GO:0048046,apoplast;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_564339.1 chlorophyll A/B binding protein 3 [Arabidopsis thaliana]	1605	1556	889	705
AT1G30540	transcription only	-1.4703686712354176	-0.7701074443031237	AT1G30540	--	GO:0008150,biological_process; GO:0045127,N-acetylglucosamine kinase activity; GO:0046835,carbohydrate phosphorylation;	--	NP_564358.1 Actin-like ATPase superfamily protein [Arabidopsis thaliana]	49	35	16	16
AT1G31330	transcription only	-1.1603042113066022	-0.10868400571804245	AT1G31330	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding;	psaF; photosystem I subunit III; K02694;	NP_174418.1 photosystem I subunit F [Arabidopsis thaliana]	1912	1850	1390	944
AT1G32120	transcription only	-1.3636850250567731	-0.9349693672602984	AT1G32120	--	GO:0010073,meristem maintenance; GO:0048507,meristem development;	--	NP_174491.2 serine/threonine-protein phosphatase 7 long form-like protein [Arabidopsis thaliana]	32	21	15	4
AT1G33240	transcription only	-1.4024331194966997	-0.25718577554561145	AT1G33240	Trihelix	--	--	NP_001322395.1 GT-2-like 1 [Arabidopsis thaliana]	111	109	73	50
AT1G36380	transcription only	1.0965857218452857	-0.8041489464547281	AT1G36380	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_564474.1 transmembrane protein [Arabidopsis thaliana]	29	14	9	7
AT1G43170	transcription only	1.6497564850048465	0.5869367473800503	AT1G43170	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L3e, RPL3; large subunit ribosomal protein L3e; K02925;	NP_001031146.1 ribosomal protein 1 [Arabidopsis thaliana]	3002	2792	3355	2438
AT1G43670	transcription only	-2.09360024539768	-0.3072097603850679	AT1G43670	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0005986,sucrose biosynthetic process; GO:0006000,fructose metabolic process; GO:0006002,fructose 6-phosphate metabolic process; GO:0006094,gluconeogenesis; GO:0009737,response to abscisic acid; GO:0009750,response to fructose; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0042132,fructose 1,6-bisphosphate 1-phosphatase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046872,metal ion binding;	FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11]; K03841;	NP_175032.1 Inositol monophosphatase family protein [Arabidopsis thaliana]	458	431	239	232
AT1G43710	transcription only	-1.2998769635219456	-0.0914017487941384	AT1G43710	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006580,ethanolamine metabolic process; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0016831,carboxy-lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030170,pyridoxal phosphate binding; GO:0102705,serine decarboxylase activity; GO:1901564,organonitrogen compound metabolic process;	--	NP_175036.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]	359	276	217	175
AT1G48620	transcription only	-1.213596804218018	0.29180101654797763	AT1G48620	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_175295.1 high mobility group A5 [Arabidopsis thaliana]	234	264	231	176
AT1G48970	transcription only	-1.1976478886242743	-0.03503275058613016	AT1G48970	--	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0006413,translational initiation; GO:0016740,transferase activity; GO:0044237,cellular metabolic process;	EIF2B4; translation initiation factor eIF-2B subunit delta; K03680;	NP_175327.3 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]	83	78	63	42
AT1G49140	transcription only	3.0319951039762163	-0.26079110136641037	AT1G49140	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFB10; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10; K03966;	NP_001321329.1 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6) [Arabidopsis thaliana]	74	92	43	48
AT1G51590	transcription only	1.0756279905942845	0.22510952907449472	AT1G51590	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0004559,alpha-mannosidase activity; GO:0004571,mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; GO:0005509,calcium ion binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006486,protein glycosylation; GO:0006491,N-glycan processing; GO:0008152,metabolic process; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0046872,metal ion binding;	MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]; K01230;	NP_001031171.1 alpha-mannosidase 1 [Arabidopsis thaliana]	105	90	81	69
AT1G54680	transcription only	1.299838812036152	-0.30368646271904887	AT1G54680	--	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006413,translational initiation; GO:0006508,proteolysis; GO:0016020,membrane;	--	NP_001319230.1 translation initiation factor 3 subunit I [Arabidopsis thaliana]	14	5	6	4
AT1G55370	transcription only	1.1289158844333045	-0.43784241536137464	AT1G55370	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010628,positive regulation of gene expression; GO:0016020,membrane; GO:0030246,carbohydrate binding; GO:0047938,glucose-6-phosphate 1-epimerase activity;	--	NP_849810.1 NDH-dependent cyclic electron flow 5 [Arabidopsis thaliana]	6	12	5	4
AT1G55920	transcription only	-1.2526968825633846	-0.2007716553630186	AT1G55920	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006535,cysteine biosynthetic process from serine; GO:0008652,cellular amino acid biosynthetic process; GO:0009001,serine O-acetyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009970,cellular response to sulfate starvation; GO:0016412,serine O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019344,cysteine biosynthetic process;	cysE; serine O-acetyltransferase [EC:2.3.1.30]; K00640;	NP_175988.1 serine acetyltransferase 2;1 [Arabidopsis thaliana]	113	101	57	64
AT1G56110	transcription only	1.5444811010298944	0.4782060886693915	AT1G56110	--	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex;	NOP56; nucleolar protein 56; K14564;	NP_176007.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	1470	1101	1411	964
AT1G56160	transcription only	2.235935299231582	0.5114669036062626	AT1G56160	MYB	GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0010043,response to zinc ion; GO:0010468,regulation of gene expression; GO:0019748,secondary metabolic process; GO:0046686,response to cadmium ion; GO:0051365,cellular response to potassium ion starvation; GO:0055065,metal ion homeostasis; GO:1990359,stress response to zinc ion; GO:1990532,stress response to nickel ion; GO:1990641,response to iron ion starvation;	--	NP_176012.1 myb domain protein 72 [Arabidopsis thaliana]	20	4	0	19
AT1G61520	transcription only	-1.280703868105332	-0.03884604458383843	AT1G61520	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA3; light-harvesting complex I chlorophyll a/b binding protein 3; K08909;	NP_001185280.1 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]	6180	5366	4219	3223
AT1G61600	transcription only	-1.8203549250786029	0.7129450059902739	AT1G61600	--	--	--	NP_176354.1 DUF1262 family protein (DUF1262) [Arabidopsis thaliana]	16	0	8	8
AT1G62850	transcription only	1.2785824275174993	-0.16793288962705238	AT1G62850	--	GO:0003747,translation release factor activity; GO:0005634,nucleus; GO:0006415,translational termination;	--	NP_001077760.1 Class I peptide chain release factor [Arabidopsis thaliana]	30	33	19	18
AT1G63980	transcription only	1.0398847904801254	0.3933768793026948	AT1G63980	--	GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0042127,regulation of cell population proliferation; GO:0042254,ribosome biogenesis; GO:0042274,ribosomal small subunit biogenesis; GO:0090069,regulation of ribosome biogenesis;	--	NP_564820.1 D111/G-patch domain-containing protein [Arabidopsis thaliana]	93	77	91	58
AT1G64510	transcription only	-1.6894264822234364	-0.8004462898993016	AT1G64510	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6; K02990;	NP_176632.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	387	404	201	107
AT1G64710	transcription only	-1.9967171272604431	0.34583877254758566	AT1G64710	--	GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity;	E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1]; K00001;	NP_176652.3 GroES-like zinc-binding alcohol dehydrogenase family protein [Arabidopsis thaliana]	15	18	21	8
AT1G64790	transcription only	6.233523756689867	0.22042095119690625	AT1G64790	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009627,systemic acquired resistance; GO:0009682,induced systemic resistance; GO:0019887,protein kinase regulator activity; GO:0019901,protein kinase binding; GO:0033674,positive regulation of kinase activity; GO:0034198,cellular response to amino acid starvation; GO:0042742,defense response to bacterium; GO:0043022,ribosome binding; GO:0045087,innate immune response;	--	NP_001322207.1 ILITYHIA [Arabidopsis thaliana]	731	744	630	510
AT1G65010	transcription only	-1.1064635677159549	-0.05480549908666592	AT1G65010	--	GO:0005875,microtubule associated complex; GO:0007131,reciprocal meiotic recombination; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_176681.4 WEB family protein (DUF827) [Arabidopsis thaliana]	545	475	326	316
AT1G65590	transcription only	2.072196025230244	-0.3328148621719339	AT1G65590	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004563,beta-N-acetylhexosaminidase activity; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0015929,hexosaminidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030203,glycosaminoglycan metabolic process; GO:0102148,N-acetyl-beta-D-galactosaminidase activity;	HEXA_B; hexosaminidase [EC:3.2.1.52]; K12373;	NP_176737.2 beta-hexosaminidase 3 [Arabidopsis thaliana]	133	162	116	46
AT1G67820	transcription only	-1.8242377208840597	-0.02063604889383052	AT1G67820	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_176948.2 Protein phosphatase 2C family protein [Arabidopsis thaliana]	18	31	15	17
AT1G68010	transcription only	-1.8628014680978584	-0.6468801004310262	AT1G68010	--	GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008266,poly(U) RNA binding; GO:0008465,glycerate dehydrogenase activity; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0042631,cellular response to water deprivation; GO:0048046,apoplast; GO:0051287,NAD binding; GO:0071482,cellular response to light stimulus;	HPR1; glycerate dehydrogenase [EC:1.1.1.29]; K15893;	NP_176968.1 hydroxypyruvate reductase [Arabidopsis thaliana]	908	954	458	336
AT1G68760	transcription only	1.095819891767457	0.5776361319022901	AT1G68760	--	GO:0000210,NAD+ diphosphatase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006203,dGTP catabolic process; GO:0006974,cellular response to DNA damage stimulus; GO:0008413,8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0019177,dihydroneopterin triphosphate pyrophosphohydrolase activity; GO:0035529,NADH pyrophosphatase activity; GO:0035539,8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity; GO:0046872,metal ion binding;	--	NP_177044.1 nudix hydrolase 1 [Arabidopsis thaliana]	27	16	29	14
AT1G69060	transcription only	1.2399546119715024	0.9042134127725684	AT1G69060	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function;	--	NP_849864.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	24	15	33	16
AT1G69160	transcription only	-1.1021111478886991	0.07516132786717403	AT1G69160	--	GO:0005886,plasma membrane; GO:0009734,auxin-activated signaling pathway; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0016020,membrane; GO:0060918,auxin transport;	--	NP_564952.1 suppressor [Arabidopsis thaliana]	20	25	14	17
AT1G69260	transcription only	1.179714853832583	-0.3107243376855939	AT1G69260	--	GO:0005634,nucleus; GO:0007165,signal transduction; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_564956.1 ABI five binding protein [Arabidopsis thaliana]	15	8	1	10
AT1G70330	transcription only	1.409421220088671	0.0496484393686212	AT1G70330	--	GO:0000325,plant-type vacuole; GO:0005337,nucleoside transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1901642,nucleoside transmembrane transport;	SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3; K15014;	NP_564987.2 equilibrative nucleotide transporter 1 [Arabidopsis thaliana]	429	384	344	219
AT1G70600	transcription only	1.1418460868287126	0.6866308630386553	AT1G70600	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae; K02900;	NP_177217.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]	526	551	642	510
AT1G71440	transcription only	1.7925943628202132	-0.314366247509403	AT1G71440	--	GO:0000226,microtubule cytoskeleton organization; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0007021,tubulin complex assembly; GO:0007023,post-chaperonin tubulin folding pathway; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0043014,alpha-tubulin binding;	--	NP_565017.1 tubulin folding cofactor E / Pfifferling (PFI) [Arabidopsis thaliana]	121	90	70	43
AT1G72275	transcription only	-2.417933920743007	-0.3507986808890616	AT1G72275	--	GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0035098,ESC/E(Z) complex; GO:0035102,PRC1 complex; GO:0046872,metal ion binding;	--	NP_001320443.1 LOW protein: nuclease-like protein [Arabidopsis thaliana]	13	7	10	1
AT1G72360	transcription only	1.485125958012213	0.08173017451993503	AT1G72360	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009723,response to ethylene; GO:0009873,ethylene-activated signaling pathway; GO:0034059,response to anoxia; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0071369,cellular response to ethylene stimulus; GO:0071454,cellular response to anoxia; GO:0071456,cellular response to hypoxia;	--	NP_001077812.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	10	5	4	6
AT1G73200	transcription only	-1.6231114300313112	-0.38143957305766624	AT1G73200	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_177463.1 testis-expressed sequence 2-like protein (DUF2404) [Arabidopsis thaliana]	130	89	71	41
AT1G73970	transcription only	1.158275088593809	-0.9437905646131224	AT1G73970	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_177537.2 obscurin-like protein [Arabidopsis thaliana]	280	116	64	67
AT1G74580	transcription only	1.2899517522763606	0.5055412964330896	AT1G74580	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_001322154.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	16	23	20	17
AT1G74800	transcription only	1.08741261720961	0.29316389811352633	AT1G74800	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008378,galactosyltransferase activity; GO:0010405,arabinogalactan protein metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0018258,protein O-linked glycosylation via hydroxyproline; GO:0030246,carbohydrate binding; GO:0034645,cellular macromolecule biosynthetic process; GO:0044238,primary metabolic process; GO:0080147,root hair cell development; GO:1901137,carbohydrate derivative biosynthetic process; GO:1990714,hydroxyproline O-galactosyltransferase activity;	--	NP_177618.2 Galactosyltransferase family protein [Arabidopsis thaliana]	86	81	78	58
AT1G75290	transcription only	-1.8498246701524992	-0.822662115884237	AT1G75290	--	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_001321702.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	23	24	6	11
AT1G75820	transcription only	-1.0909918424846334	-0.7708158814683854	AT1G75820	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009934,regulation of meristem structural organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0036289,peptidyl-serine autophosphorylation; GO:0043621,protein self-association; GO:0106310,protein serine kinase activity;	E2.7.1.-; kinase [EC:2.7.1.-]; K00924;	AAB58929.1 CLV1 receptor kinase [Arabidopsis thaliana]	137	91	57	32
AT1G76090	transcription only	-1.896582923792573	-0.1421169284251004	AT1G76090	--	GO:0003838,sterol 24-C-methyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008168,methyltransferase activity; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0030797,24-methylenesterol C-methyltransferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143]; K08242;	NP_177736.1 sterol methyltransferase 3 [Arabidopsis thaliana]	320	240	198	138
AT1G77122	transcription only	3.044378791453464	-0.2101063968323772	AT1G77122	--	GO:0008150,biological_process;	--	NP_849898.1 Uncharacterized protein family UPF0090 [Arabidopsis thaliana]	62	48	21	39
AT1G77400	transcription only	-1.7814178263053444	-0.1393912077558886	AT1G77400	--	--	--	NP_177864.1 extensin-like protein [Arabidopsis thaliana]	15	13	5	11
AT1G77940	transcription only	1.3518799459358204	0.7285610507915099	AT1G77940	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L30e, RPL30; large subunit ribosomal protein L30e; K02908;	NP_565164.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	947	849	1062	899
AT1G78000	transcription only	2.0660383764443635	-0.01310145466812824	AT1G78000	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0009970,cellular response to sulfate starvation; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_001321366.1 sulfate transporter 1;2 [Arabidopsis thaliana]	47	47	30	31
AT1G78040	transcription only	1.416564959116607	-0.39315398588076433	AT1G78040	--	GO:0005515,protein binding;	--	NP_001077838.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	3616	3591	1995	1640
AT1G78100	transcription only	1.0250653185212837	-0.19752895806659787	AT1G78100	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009736,cytokinin-activated signaling pathway; GO:0010540,basipetal auxin transport; GO:0010541,acropetal auxin transport; GO:0016567,protein ubiquitination;	--	NP_565169.1 F-box family protein [Arabidopsis thaliana]	100	84	65	42
AT1G78180	transcription only	2.9002691262037965	-0.08401452300520175	AT1G78180	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_565171.4 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	38	14	25	8
AT1G78770	transcription only	1.495252275859805	-0.0053838372415097	AT1G78770	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0007091,metaphase/anaphase transition of mitotic cell cycle; GO:0010087,phloem or xylem histogenesis; GO:0016567,protein ubiquitination; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0032875,regulation of DNA endoreduplication; GO:0045842,positive regulation of mitotic metaphase/anaphase transition; GO:0051301,cell division;	APC6, CDC16; anaphase-promoting complex subunit 6; K03353;	NP_565188.1 anaphase promoting complex 6 [Arabidopsis thaliana]	137	113	69	91
AT1G79040	transcription only	-1.0975879309935914	-0.8522729803716482	AT1G79040	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010270,photosystem II oxygen evolving complex assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042651,thylakoid membrane;	psbR; photosystem II 10kDa protein; K03541;	NP_178025.1 photosystem II subunit R [Arabidopsis thaliana]	5278	4399	1887	1632
AT1G79530	transcription only	-1.209459128533494	-0.0769106299502539	AT1G79530	--	GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006096,glycolytic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0048658,anther wall tapetum development; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0080022,primary root development; GO:0080144,amino acid homeostasis;	GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]; K00134;	NP_178071.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 [Arabidopsis thaliana]	427	402	271	246
AT1G79700	transcription only	1.3401215408335894	0.279649471067397	AT1G79700	AP2	GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045723,positive regulation of fatty acid biosynthetic process; GO:1901959,positive regulation of cutin biosynthetic process; GO:1904278,positive regulation of wax biosynthetic process;	--	NP_001077849.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	31	29	31	18
AT1G79720	transcription only	-1.5323823319965428	-0.3351217869762135	AT1G79720	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0048046,apoplast;	--	NP_565219.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	128	129	74	61
AT1G80310	transcription only	-1.0095924439460708	0.01081744288834108	AT1G80310	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0015098,molybdate ion transmembrane transporter activity; GO:0015689,molybdate ion transport; GO:0016020,membrane; GO:0090414,molybdate ion export from vacuole;	--	NP_178147.1 sulfate transmembrane transporter [Arabidopsis thaliana]	91	74	79	34
AT1G80760	transcription only	2.050563428950368	-0.7305429158648896	AT1G80760	--	GO:0005886,plasma membrane; GO:0015168,glycerol transmembrane transporter activity; GO:0015204,urea transmembrane transporter activity; GO:0015267,channel activity; GO:0015793,glycerol transmembrane transport; GO:0016020,membrane; GO:0035445,borate transmembrane transport; GO:0046713,borate transport; GO:0046715,active borate transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071918,urea transmembrane transport; GO:0080029,cellular response to boron-containing substance levels;	--	NP_178191.1 NOD26-like intrinsic protein 6;1 [Arabidopsis thaliana]	62	48	32	13
AT1G80850	transcription only	1.205800874752996	-0.19625881031427392	AT1G80850	--	GO:0003824,catalytic activity; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0008725,DNA-3-methyladenine glycosylase activity;	tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]; K01246;	NP_178200.1 DNA glycosylase superfamily protein [Arabidopsis thaliana]	53	41	30	24
AT1G80910	transcription only	1.0297144995055072	-0.31264960744321935	AT1G80910	--	GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0016192,vesicle-mediated transport; GO:0035658,Mon1-Ccz1 complex; GO:0043231,intracellular membrane-bounded organelle; GO:0050790,regulation of catalytic activity;	--	AAF14679.1 F23A5.27 [Arabidopsis thaliana]	56	68	39	28
AT2G01570	transcription only	-1.1211474036529387	-0.0969215558476133	AT2G01570	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009938,negative regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010187,negative regulation of seed germination; GO:0010218,response to far red light; GO:0010628,positive regulation of gene expression; GO:0033206,meiotic cytokinesis; GO:0042176,regulation of protein catabolic process; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:1900033,negative regulation of trichome patterning; GO:1905614,negative regulation of developmental vegetative growth; GO:1905622,negative regulation of leaf development; GO:1990841,promoter-specific chromatin binding; GO:2000033,regulation of seed dormancy process; GO:2000377,regulation of reactive oxygen species metabolic process;	DELLA; DELLA protein; K14494;	NP_178266.1 GRAS family transcription factor family protein [Arabidopsis thaliana]	312	359	216	199
AT2G01755	transcription only	-1.4308458577947547	-0.02484326373014612	AT2G01755	--	GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_001323453.1 hypothetical protein AT2G01755 [Arabidopsis thaliana]	12	4	5	5
AT2G02750	transcription only	1.2208669865688426	0.23190119826180475	AT2G02750	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle;	--	NP_178378.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	65	62	56	43
AT2G02760	transcription only	-1.531584538199353	-0.2832405179577665	AT2G02760	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016567,protein ubiquitination; GO:0016574,histone ubiquitination; GO:0016740,transferase activity; GO:0033523,histone H2B ubiquitination; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0061631,ubiquitin conjugating enzyme activity;	UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]; K10573;	NP_001288862.1 ubiquitin-conjugating enzyme E2 2 [Brassica rapa]	312	292	231	107
AT2G04039	transcription only	2.7168983617249616	0.06910197530110442	AT2G04039	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009579,thylakoid;	--	NP_565308.1 DUF2996 family protein [Arabidopsis thaliana]	8	14	11	5
AT2G04410	transcription only	-1.1477327339818668	0.563247289515277	AT2G04410	--	GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0009506,plasmodesma;	--	NP_178522.2 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]	87	104	88	97
AT2G16660	transcription only	-1.8910369998568943	0.8597735946105566	AT2G16660	--	GO:0016020,membrane;	--	NP_179257.1 Major facilitator superfamily protein [Arabidopsis thaliana]	564	469	715	527
AT2G17300	transcription only	-2.325542542561465	0.29856333108970884	AT2G17300	--	--	--	NP_179322.1 hypothetical protein AT2G17300 [Arabidopsis thaliana]	88	68	74	53
AT2G17695	transcription only	6.229215156618648	-0.1990758715274133	AT2G17695	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope;	--	NP_001118341.1 outer envelope protein [Arabidopsis thaliana]	30	45	25	19
AT2G17880	transcription only	1.087151320355102	-0.6637517032319963	AT2G17880	--	GO:0009507,chloroplast;	--	NP_179378.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	467	412	211	157
AT2G18670	transcription only	1.0248306182376512	0.5770125406461035	AT2G18670	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_179457.1 RING/U-box superfamily protein [Arabidopsis thaliana]	7	14	16	6
AT2G18960	transcription only	-1.2777894354969124	0.08422128883561918	AT2G18960	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0000325,plant-type vacuole; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008553,P-type proton-exporting transporter activity; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009737,response to abscisic acid; GO:0010119,regulation of stomatal movement; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0051453,regulation of intracellular pH; GO:0120029,proton export across plasma membrane; GO:1902600,proton transmembrane transport; GO:1990069,stomatal opening;	PMA1, PMA2; H+-transporting ATPase [EC:7.1.2.1]; K01535;	NP_179486.1 H[+]-ATPase 1 [Arabidopsis thaliana]	2053	1936	1608	1203
AT2G19180	transcription only	1.2913974015238134	0.627709737568999	AT2G19180	--	--	--	NP_001325144.1 hypothetical protein AT2G19180 [Arabidopsis thaliana]	21	6	11	15
AT2G19680	transcription only	2.1269194430036302	-0.4681821975720245	AT2G19680	--	GO:0000276,mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); GO:0005739,mitochondrion; GO:0006811,ion transport; GO:0015078,proton transmembrane transporter activity; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045263,proton-transporting ATP synthase complex, coupling factor F(o); GO:1902600,proton transmembrane transport;	ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g; K02140;	NP_001077919.1 Mitochondrial ATP synthase subunit G protein [Arabidopsis thaliana]	72	72	38	31
AT2G19710	transcription only	1.1686865200193892	0.4582849982992827	AT2G19710	--	GO:0003674,molecular_function; GO:0008104,protein localization; GO:0015031,protein transport;	--	NP_179561.2 Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]	70	88	91	56
AT2G19780	transcription only	-2.742007393662412	0.17810569148928368	AT2G19780	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_179568.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	84	64	55	54
AT2G20770	transcription only	-1.2568838733990269	0.1090841793994543	AT2G20770	--	GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0019898,extrinsic component of membrane; GO:0046872,metal ion binding;	--	NP_850003.1 GCR2-like 2 [Arabidopsis thaliana]	14	8	6	9
AT2G21340	transcription only	2.0479836508053335	-0.2996291286530539	AT2G21340	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_565509.4 MATE efflux family protein [Arabidopsis thaliana]	127	115	83	49
AT2G22330	transcription only	1.5221212180369623	0.32870058906835	AT2G22330	--	GO:0002229,defense response to oomycetes; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006569,tryptophan catabolic process; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009682,induced systemic resistance; GO:0009684,indoleacetic acid biosynthetic process; GO:0010112,regulation of systemic acquired resistance; GO:0010120,camalexin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019761,glucosinolate biosynthetic process; GO:0020037,heme binding; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0052544,defense response by callose deposition in cell wall;	CYP79B3; tryptophan N-monooxygenase [EC:1.14.14.156]; K11813;	NP_001323954.1 cytochrome P450, family 79, subfamily B, polypeptide 3 [Arabidopsis thaliana]	22	15	25	7
AT2G22670	transcription only	-1.8780820795808555	-0.01493474164791405	AT2G22670	--	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010311,lateral root formation; GO:0045892,negative regulation of DNA-templated transcription; GO:1901332,negative regulation of lateral root development;	IAA; auxin-responsive protein IAA; K14484;	NP_001077943.1 indoleacetic acid-induced protein 8 [Arabidopsis thaliana]	1198	1175	914	653
AT2G22870	transcription only	2.5396516191852943	0.6386177349423579	AT2G22870	--	GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0046872,metal ion binding;	--	NP_565543.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	29	43	51	26
AT2G23120	transcription only	1.834924260048343	-0.6153958126212721	AT2G23120	--	GO:0005773,vacuole; GO:0005829,cytosol;	--	NP_565548.1 Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana]	280	274	140	101
AT2G23290	transcription only	1.1169405032601771	-0.18359892013655993	AT2G23290	MYB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_179910.1 myb domain protein 70 [Arabidopsis thaliana]	46	50	30	26
AT2G23610	transcription only	1.3311177579292608	-0.9852766188576482	AT2G23610	--	GO:0005773,vacuole; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0031408,oxylipin biosynthetic process; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_179942.1 methyl esterase 3 [Arabidopsis thaliana]	19	25	9	6
AT2G24580	transcription only	-1.4876763625485732	-0.8380537410383307	AT2G24580	--	GO:0008115,sarcosine oxidase activity; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding;	PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7]; K00306;	NP_180034.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]	130	98	36	46
AT2G25800	transcription only	2.107478668624082	-0.3576151591635879	AT2G25800	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation;	--	NP_180151.3 elongation factor Ts (DUF810) [Arabidopsis thaliana]	341	304	197	138
AT2G25880	transcription only	-1.974489602092827	-0.01461299910758909	AT2G25880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_001325078.1 ataurora2 [Arabidopsis thaliana]	29	35	22	20
AT2G26180	transcription only	-1.1210952589577694	-0.8585426543836463	AT2G26180	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007105,cytokinesis, site selection; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0016020,membrane; GO:0016604,nuclear body; GO:0016607,nuclear speck;	--	NP_180187.1 IQ-domain 6 [Arabidopsis thaliana]	39	27	14	10
AT2G26440	transcription only	1.3388619077662371	-0.31436821466893833	AT2G26440	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0009617,response to bacterium; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	--	NP_180212.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	390	340	238	154
AT2G26975	transcription only	-1.3262467227420172	-0.7681986165105414	AT2G26975	--	GO:0000325,plant-type vacuole; GO:0005375,copper ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0035434,copper ion transmembrane transport;	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1; K14686;	NP_850091.1 Ctr copper transporter family [Arabidopsis thaliana]	51	21	8	18
AT2G28080	transcription only	-1.4314221920271364	-0.00932599261875019	AT2G28080	--	GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_180375.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	121	105	102	50
AT2G28650	transcription only	-1.033059993636498	0.19086672780683064	AT2G28650	--	GO:0000145,exocyst; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0006887,exocytosis; GO:0015031,protein transport;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_180433.1 exocyst subunit exo70 family protein H8 [Arabidopsis thaliana]	10	6	7	5
AT2G29180	transcription only	1.1191321846130915	-0.36392767982916013	AT2G29180	--	GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_180481.1 transmembrane protein [Arabidopsis thaliana]	18	47	22	13
AT2G29630	transcription only	-1.233930280169978	-0.5129101537022701	AT2G29630	--	GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010266,response to vitamin B1; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding;	thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]; K03147;	NP_001189634.1 thiaminC [Arabidopsis thaliana]	1025	1051	541	426
AT2G30770	transcription only	-2.1525324773494368	-0.26100698558539615	AT2G30770	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006952,defense response; GO:0016020,membrane; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016829,lyase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0047720,indoleacetaldoxime dehydratase activity;	CYP71A13; indoleacetaldoxime dehydratase [EC:4.99.1.6]; K11868;	NP_180635.3 cytochrome P450 family 71 polypeptide [Arabidopsis thaliana]	17	14	0	15
AT2G31410	transcription only	1.6789323758877874	0.660926353685236	AT2G31410	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process;	--	NP_565723.1 coiled-coil protein [Arabidopsis thaliana]	72	69	89	60
AT2G31560	transcription only	1.8451681375801232	-0.28093510770730395	AT2G31560	--	--	--	NP_001325346.1 signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana]	87	71	60	28
AT2G31890	transcription only	1.6388951238266576	-0.6479057099908818	AT2G31890	--	GO:0000963,mitochondrial RNA processing; GO:0003723,RNA binding; GO:0005759,mitochondrial matrix; GO:0006364,rRNA processing; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0035770,ribonucleoprotein granule; GO:0042644,chloroplast nucleoid; GO:0042646,plastid nucleoid; GO:0044528,regulation of mitochondrial mRNA stability; GO:1901259,chloroplast rRNA processing;	--	NP_850176.1 RAP [Arabidopsis thaliana]	99	96	43	39
AT2G32280	transcription only	-3.1024412610200116	0.14223324840235133	AT2G32280	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009855,determination of bilateral symmetry; GO:0010087,phloem or xylem histogenesis; GO:0010252,auxin homeostasis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0016020,membrane; GO:0048366,leaf development; GO:0048825,cotyledon development; GO:0051302,regulation of cell division;	--	NP_001323429.1 GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]	43	25	22	26
AT2G33845	transcription only	1.122385194816114	0.17809617974938774	AT2G33845	--	GO:0003729,mRNA binding; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process;	--	NP_565774.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	56	92	69	45
AT2G34420	transcription only	-1.3531022475004335	-0.9214443624443652	AT2G34420	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_565786.1 photosystem II light harvesting complex protein B1B2 [Arabidopsis thaliana]	2578	2523	962	818
AT2G35370	transcription only	-1.2542149327518526	-0.6807869559823556	AT2G35370	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005960,glycine cleavage complex; GO:0009249,protein lipoylation; GO:0009579,thylakoid; GO:0019464,glycine decarboxylation via glycine cleavage system;	gcvH, GCSH; glycine cleavage system H protein; K02437;	NP_181080.1 glycine decarboxylase complex H [Arabidopsis thaliana]	325	340	166	112
AT2G35820	transcription only	-1.798919183206186	0.13576041205322598	AT2G35820	--	GO:0004848,ureidoglycolate hydrolase activity; GO:0005829,cytosol; GO:0016787,hydrolase activity;	--	NP_001325071.1 ureidoglycolate hydrolase [Arabidopsis thaliana]	50	33	24	34
AT2G37230	transcription only	-2.287774225446055	0.2886184102866584	AT2G37230	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009409,response to cold; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane;	--	NP_181260.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	421	352	321	297
AT2G37975	transcription only	1.4310367007368776	0.7202254096185344	AT2G37975	--	GO:0000139,Golgi membrane; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0030134,COPII-coated ER to Golgi transport vesicle;	--	NP_001318371.1 Yos1-like protein [Arabidopsis thaliana]	18	20	25	17
AT2G38480	transcription only	1.4236292313621266	0.4179540419840851	AT2G38480	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_565891.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	29	53	36	37
AT2G39435	transcription only	1.3230846562599523	0.5436897788831946	AT2G39435	--	--	--	NP_001189712.1 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]	7	10	6	10
AT2G39800	transcription only	1.717083027396109	0.41826325954517735	AT2G39800	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004349,glutamate 5-kinase activity; GO:0004350,glutamate-5-semialdehyde dehydrogenase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006561,proline biosynthetic process; GO:0006979,response to oxidative stress; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009084,glutamine family amino acid biosynthetic process; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009555,pollen development; GO:0009651,response to salt stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0016740,transferase activity; GO:0017084,delta1-pyrroline-5-carboxylate synthetase activity; GO:0042538,hyperosmotic salinity response; GO:0048364,root development; GO:0055129,L-proline biosynthetic process;	ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase [EC:2.7.2.11 1.2.1.41]; K12657;	NP_001189715.1 delta1-pyrroline-5-carboxylate synthase 1 [Arabidopsis thaliana]	1289	1225	1216	1005
AT2G40200	transcription only	1.045461832317456	0.1404202618538187	AT2G40200	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity;	--	NP_181549.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	16	5	9	6
AT2G40770	transcription only	1.0757652360628098	-0.9910142910702768	AT2G40770	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006338,chromatin remodeling; GO:0008150,biological_process; GO:0046872,metal ion binding; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_001318395.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]	84	60	29	19
AT2G41680	transcription only	1.0001662800123796	-0.20528835504948495	AT2G41680	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0010581,regulation of starch biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0019430,removal of superoxide radicals; GO:0042744,hydrogen peroxide catabolic process; GO:0042802,identical protein binding; GO:0043085,positive regulation of catalytic activity; GO:0045454,cell redox homeostasis;	trxB, TRR; thioredoxin reductase (NADPH) [EC:1.8.1.9]; K00384;	CAD5321071.1 unnamed protein product [Arabidopsis thaliana]	178	155	118	75
AT2G42690	transcription only	1.0624724851127332	-0.475824961742297	AT2G42690	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0009650,UV protection; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0071493,cellular response to UV-B;	--	NP_181797.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	285	217	146	94
AT2G42900	transcription only	-1.056968582007704	-0.2875499906512427	AT2G42900	--	GO:0005575,cellular_component;	--	NP_181818.1 Plant basic secretory protein (BSP) family protein [Arabidopsis thaliana]	43	49	16	32
AT2G42980	transcription only	-1.1037288324384085	0.04559338611815668	AT2G42980	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_181826.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	19	12	12	9
AT2G44730	transcription only	-1.0542587842010498	-0.20070707813928812	AT2G44730	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0019760,glucosinolate metabolic process;	--	NP_182001.1 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Arabidopsis thaliana]	121	98	72	54
AT2G46210	transcription only	-1.1660420350160825	0.07976232689231817	AT2G46210	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016717,oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; GO:0030148,sphingolipid biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0046872,metal ion binding; GO:0052631,sphingolipid delta-8 desaturase activity; GO:0070417,cellular response to cold;	SLD; sphingolipid 8-(E/Z)-desaturase [EC:1.14.19.29]; K21734;	NP_182144.1 Fatty acid/sphingolipid desaturase [Arabidopsis thaliana]	20	23	5	23
AT2G46225	transcription only	1.648166879886123	-0.00587371961872678	AT2G46225	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0010090,trichome morphogenesis; GO:0031209,SCAR complex; GO:0045010,actin nucleation; GO:0110165,cellular anatomical entity;	--	NP_001189756.1 ABI-1-like 1 [Arabidopsis thaliana]	98	126	82	67
AT2G46520	transcription only	-2.7222183753438833	0.20929464418116384	AT2G46520	--	GO:0005049,nuclear export signal receptor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006611,protein export from nucleus; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0031267,small GTPase binding;	CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter); K18423;	NP_182175.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter [Arabidopsis thaliana]	423	403	303	320
AT2G46590	transcription only	-1.0856025948087764	0.1255892385121926	AT2G46590	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009845,seed germination; GO:0010030,positive regulation of seed germination; GO:0010161,red light signaling pathway; GO:0010372,positive regulation of gibberellin biosynthetic process; GO:0046872,metal ion binding; GO:0071462,cellular response to water stimulus; GO:0071491,cellular response to red light;	--	NP_182182.2 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	51	51	42	32
AT2G46810	transcription only	1.364142081654353	0.9773450780931946	AT2G46810	bHLH	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009631,cold acclimation; GO:0042803,protein homodimerization activity; GO:0046983,protein dimerization activity;	--	NP_182204.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	13	8	20	8
AT2G47180	transcription only	1.0802951985185545	0.5583353422362913	AT2G47180	--	GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0006012,galactose metabolic process; GO:0006950,response to stress; GO:0006979,response to oxidative stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046872,metal ion binding; GO:0047216,inositol 3-alpha-galactosyltransferase activity;	GOLS; inositol 3-alpha-galactosyltransferase [EC:2.4.1.123]; K18819;	NP_182240.1 galactinol synthase 1 [Arabidopsis thaliana]	36	57	61	33
AT2G47210	transcription only	1.2478174147758438	0.20474013347169	AT2G47210	MYB_related	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000812,Swr1 complex; GO:0003677,DNA binding; GO:0003714,transcription corepressor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0035267,NuA4 histone acetyltransferase complex; GO:0043967,histone H4 acetylation; GO:0043968,histone H2A acetylation; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001323962.1 myb-like transcription factor family protein [Arabidopsis thaliana]	138	131	123	84
AT2G47980	transcription only	1.7829088595122926	-0.03509571883747015	AT2G47980	--	GO:0000278,mitotic cell cycle; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0007049,cell cycle; GO:0007059,chromosome segregation; GO:0007062,sister chromatid cohesion; GO:0008278,cohesin complex; GO:0051301,cell division; GO:0051455,monopolar spindle attachment to meiosis I kinetochore; GO:0051754,meiotic sister chromatid cohesion, centromeric;	STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2; K06671;	NP_566119.1 sister-chromatid cohesion protein 3 [Arabidopsis thaliana]	401	360	304	193
AT3G01050	transcription only	1.0894155572158295	-0.15312663769086535	AT3G01050	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_001319438.1 membrane-anchored ubiquitin-fold protein 1 precursor [Arabidopsis thaliana]	18	9	10	6
AT3G01500	transcription only	-1.2246908622023358	-0.07261320366742789	AT3G01500	--	GO:0003729,mRNA binding; GO:0004089,carbonate dehydratase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010037,response to carbon dioxide; GO:0010119,regulation of stomatal movement; GO:0010319,stromule; GO:0015976,carbon utilization; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016829,lyase activity; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:2000122,negative regulation of stomatal complex development;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_186799.2 carbonic anhydrase 1 [Arabidopsis thaliana]	2216	2082	1401	1284
AT3G02170	transcription only	-1.3840201172909383	0.13788178680647234	AT3G02170	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0008017,microtubule binding; GO:0009826,unidimensional cell growth; GO:0051513,regulation of monopolar cell growth;	--	NP_566165.2 longifolia2 [Arabidopsis thaliana]	298	280	223	196
AT3G02200	transcription only	1.25975541915876	0.5447382815713361	AT3G02200	--	GO:0000502,proteasome complex; GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m;	--	NP_001319448.1 Proteasome component (PCI) domain protein [Arabidopsis thaliana]	371	312	389	273
AT3G02560	transcription only	-1.1113137327781637	0.7276869212508762	AT3G02560	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0009507,chloroplast; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0032040,small-subunit processome; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex;	RP-S7e, RPS7; small subunit ribosomal protein S7e; K02993;	NP_001319452.1 Ribosomal protein S7e family protein [Arabidopsis thaliana]	480	487	582	479
AT3G02570	transcription only	1.4681286636408004	-0.2116963978963864	AT3G02570	--	GO:0004476,mannose-6-phosphate isomerase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008270,zinc ion binding; GO:0009298,GDP-mannose biosynthetic process; GO:0009416,response to light stimulus; GO:0009793,embryo development ending in seed dormancy; GO:0010043,response to zinc ion; GO:0016853,isomerase activity; GO:0032025,response to cobalt ion; GO:0033591,response to L-ascorbic acid; GO:0046686,response to cadmium ion; GO:0046872,metal ion binding;	manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8]; K01809;	NP_186906.1 Mannose-6-phosphate isomerase, type I [Arabidopsis thaliana]	175	131	98	76
AT3G02780	transcription only	1.0215167962009557	0.29918758847909244	AT3G02780	--	GO:0004452,isopentenyl-diphosphate delta-isomerase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009240,isopentenyl diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009908,flower development; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016853,isomerase activity; GO:0046872,metal ion binding; GO:0050992,dimethylallyl diphosphate biosynthetic process;	idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]; K01823;	NP_186927.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 [Arabidopsis thaliana]	347	331	340	219
AT3G03910	transcription only	2.3553122391271653	-0.2579013764237635	AT3G03910	--	GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0051171,regulation of nitrogen compound metabolic process;	GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261;	NP_187041.1 glutamate dehydrogenase 3 [Arabidopsis thaliana]	59	70	51	23
AT3G04010	transcription only	-1.3313344664261422	0.1089822074266233	AT3G04010	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_187051.3 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	36	19	34	7
AT3G05010	transcription only	1.195511265560934	-0.3921357815899309	AT3G05010	--	GO:0002237,response to molecule of bacterial origin; GO:0004930,G protein-coupled receptor activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0008502,melatonin receptor activity; GO:0010015,root morphogenesis; GO:0016020,membrane; GO:0019236,response to pheromone; GO:0090333,regulation of stomatal closure; GO:1904408,melatonin binding;	--	NP_566244.1 Protein of unknown function, transmembrane-40 [Arabidopsis thaliana]	81	56	41	28
AT3G05060	transcription only	1.2966811477547082	0.8862728226327825	AT3G05060	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	NOP58; nucleolar protein 58; K14565;	NP_187157.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	479	470	672	496
AT3G05330	transcription only	-1.1566710816742316	0.4467960019231019	AT3G05330	--	GO:0000911,cytokinesis by cell plate formation; GO:0000914,phragmoplast assembly; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:2000694,regulation of phragmoplast microtubule organization;	--	NP_187184.2 cyclin family [Arabidopsis thaliana]	20	25	23	18
AT3G05750	transcription only	-1.9435440786844	0.4135357239812253	AT3G05750	--	GO:0000132,establishment of mitotic spindle orientation; GO:0000913,preprophase band assembly; GO:0009574,preprophase band;	--	NP_187226.2 serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]	48	37	44	31
AT3G05820	transcription only	1.5165380980874432	-0.1641325633330904	AT3G05820	--	GO:0004564,beta-fructofuranosidase activity; GO:0004575,sucrose alpha-glucosidase activity; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005987,sucrose catabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033926,glycopeptide alpha-N-acetylgalactosaminidase activity;	--	NP_001326532.1 invertase H [Arabidopsis thaliana]	49	36	34	17
AT3G05900	transcription only	1.3821650650211346	0.01423779068559611	AT3G05900	--	GO:0003674,molecular_function; GO:0005829,cytosol;	--	NP_187241.2 neurofilament protein-like protein [Arabidopsis thaliana]	557	542	431	309
AT3G05930	transcription only	-1.182180864144902	-0.5833368782142387	AT3G05930	--	GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development;	--	NP_187244.1 germin-like protein 8 [Arabidopsis thaliana]	216	142	90	67
AT3G06780	transcription only	1.267436366267749	-0.10160811620809942	AT3G06780	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_566293.1 glycine-rich protein [Arabidopsis thaliana]	72	70	61	29
AT3G07350	transcription only	1.2325178910534664	-0.20377654430108724	AT3G07350	--	GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0071456,cellular response to hypoxia;	--	NP_566303.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506) [Arabidopsis thaliana]	10	11	6	6
AT3G08660	transcription only	-1.4552722003764234	0.06608408392979218	AT3G08660	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001327872.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	7	10	7	5
AT3G08940	transcription only	-1.3496864838185505	-0.3822920972690037	AT3G08940	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding;	LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915;	NP_187506.1 light harvesting complex photosystem II [Arabidopsis thaliana]	1206	1290	650	612
AT3G09790	transcription only	-1.6019848295430288	-0.333924431739967	AT3G09790	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009505,plant-type cell wall; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	NP_001319513.1 ubiquitin 8 [Arabidopsis thaliana]	14	7	7	4
AT3G10060	transcription only	-1.4073818727486622	-0.4073219140982096	AT3G10060	--	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity;	--	NP_187617.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	103	118	67	45
AT3G10070	transcription only	-1.2821692032753955	0.17951195788429303	AT3G10070	--	GO:0000124,SAGA complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0017025,TBP-class protein binding; GO:0046695,SLIK (SAGA-like) complex; GO:0046982,protein heterodimerization activity; GO:0051123,RNA polymerase II preinitiation complex assembly;	TAF12; transcription initiation factor TFIID subunit 12; K03126;	NP_566367.1 TBP-associated factor 12 [Arabidopsis thaliana]	22	27	15	21
AT3G10130	transcription only	1.7015471234334587	-0.5105518787902146	AT3G10130	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0020037,heme binding; GO:0110165,cellular anatomical entity;	--	NP_187624.1 SOUL heme-binding family protein [Arabidopsis thaliana]	55	44	21	24
AT3G10180	transcription only	-2.599271752913218	0.05284204666188628	AT3G10180	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0016787,hydrolase activity;	--	NP_187629.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	62	39	46	24
AT3G10720	transcription only	2.2660249517753086	-0.3063860719035129	AT3G10720	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_187683.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	187	171	98	92
AT3G11110	transcription only	-1.9956732371713488	-0.9010067135190264	AT3G11110	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_187722.1 RING/U-box superfamily protein [Arabidopsis thaliana]	8	10	1	5
AT3G11470	transcription only	1.453503871169665	0.05181112208227043	AT3G11470	--	GO:0000287,magnesium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008897,holo-[acyl-carrier-protein] synthase activity; GO:0016740,transferase activity; GO:0018215,protein phosphopantetheinylation; GO:0019878,lysine biosynthetic process via aminoadipic acid;	LYS5, acpT; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]; K06133;	NP_187754.2 4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]	24	22	20	12
AT3G11810	transcription only	-4.19184542141857	0.24866266365872688	AT3G11810	--	GO:0016020,membrane;	--	NP_187787.1 transmembrane protein [Arabidopsis thaliana]	59	25	33	31
AT3G12400	transcription only	1.284675557892146	-0.1277603621859425	AT3G12400	--	GO:0000813,ESCRT I complex; GO:0005515,protein binding; GO:0005768,endosome; GO:0005769,early endosome; GO:0005770,late endosome; GO:0008333,endosome to lysosome transport; GO:0010091,trichome branching; GO:0015031,protein transport; GO:0032991,protein-containing complex; GO:0036211,protein modification process; GO:0043130,ubiquitin binding; GO:0051301,cell division; GO:0110165,cellular anatomical entity;	TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101; K12183;	NP_001327160.1 Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]	113	105	73	59
AT3G12480	transcription only	1.4619764629149528	0.679783960515637	AT3G12480	NF-YC	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity;	--	NP_187854.2 nuclear factor Y, subunit C11 [Arabidopsis thaliana]	46	42	61	34
AT3G12780	transcription only	-1.5111906684646204	-0.22701834952610864	AT3G12780	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004618,phosphoglycerate kinase activity; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010319,stromule; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019375,galactolipid biosynthetic process; GO:0043531,ADP binding; GO:0048046,apoplast;	PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3]; K00927;	NP_187884.1 phosphoglycerate kinase 1 [Arabidopsis thaliana]	1991	1899	1239	966
AT3G13060	transcription only	1.4053610843119513	-0.34108280683417286	AT3G13060	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_001327857.1 evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]	149	136	78	70
AT3G13230	transcription only	1.5086598207261002	0.9110193177715976	AT3G13230	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0008150,biological_process;	--	NP_001326485.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	123	135	176	146
AT3G13440	transcription only	-1.4624773008267562	0.6031111529719531	AT3G13440	--	GO:0003676,nucleic acid binding; GO:0005829,cytosol; GO:0006415,translational termination; GO:0006479,protein methylation; GO:0006807,nitrogen compound metabolic process; GO:0008168,methyltransferase activity; GO:0008276,protein methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0035657,eRF1 methyltransferase complex; GO:0043414,macromolecule methylation; GO:0044238,primary metabolic process; GO:0055072,iron ion homeostasis;	--	NP_001327233.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	13	15	14	14
AT3G14440	transcription only	-1.6886620975323885	-0.7677151159831366	AT3G14440	--	GO:0006970,response to osmotic stress; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009688,abscisic acid biosynthetic process; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0042538,hyperosmotic salinity response; GO:0045549,9-cis-epoxycarotenoid dioxygenase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840;	NP_188062.1 nine-cis-epoxycarotenoid dioxygenase 3 [Arabidopsis thaliana]	28	26	6	14
AT3G15040	transcription only	-3.7605898342348345	0.1076141333047082	AT3G15040	--	GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0010150,leaf senescence;	--	KAG7625290.1 Senescence regulator S40 [Arabidopsis thaliana x Arabidopsis arenosa]	130	95	103	59
AT3G15070	transcription only	1.2090535794251631	-0.158849795751625	AT3G15070	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0060776,simple leaf morphogenesis; GO:0061630,ubiquitin protein ligase activity;	--	NP_001189897.1 RING/U-box superfamily protein [Arabidopsis thaliana]	45	33	26	20
AT3G15260	transcription only	-2.666258451042992	0.04431166212654148	AT3G15260	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding;	--	NP_188144.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	36	56	47	19
AT3G15730	transcription only	-1.592246162011363	-0.6422945147921082	AT3G15730	--	GO:0003824,catalytic activity; GO:0004620,phospholipase activity; GO:0004630,phospholipase D activity; GO:0005096,GTPase activator activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0009395,phospholipid catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0009873,ethylene-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0010358,leaf shaping; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0031966,mitochondrial membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0050790,regulation of catalytic activity; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_188194.1 phospholipase D alpha 1 [Arabidopsis thaliana]	6134	5167	2395	2326
AT3G16250	transcription only	-1.332337041721805	0.6792179277033139	AT3G16250	--	GO:0005829,cytosol; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0140647,P450-containing electron transport chain;	--	NP_188246.1 NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]	84	89	102	82
AT3G16510	transcription only	1.6126389651090978	0.5856174519795029	AT3G16510	--	GO:0006952,defense response;	--	NP_188272.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	9	11	11	9
AT3G17030	transcription only	-2.406996900389733	0.2902065286024554	AT3G17030	--	GO:0003674,molecular_function;	--	NP_188328.5 Nucleic acid-binding proteins superfamily [Arabidopsis thaliana]	13	12	10	10
AT3G17640	transcription only	-1.5968149057212309	-0.281054229387492	AT3G17640	--	GO:0005515,protein binding;	--	NP_188391.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	18	20	18	4
AT3G17800	transcription only	-1.394105752761324	-0.6873454442599853	AT3G17800	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B;	--	NP_566588.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]	528	516	234	195
AT3G18035	transcription only	1.2787364072058125	0.19423919078272692	AT3G18035	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_188431.3 winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]	593	537	511	351
AT3G18750	transcription only	1.9068583298541495	-0.4720823866792128	AT3G18750	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	--	NP_001189928.1 with no lysine (K) kinase 6 [Arabidopsis thaliana]	37	33	11	21
AT3G18950	transcription only	-1.7165095983165313	-0.6990154618611358	AT3G18950	--	GO:0005515,protein binding;	--	NP_188525.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	7	12	5	3
AT3G19040	transcription only	-1.907752771567932	0.4672938065935271	AT3G19040	--	GO:0001091,RNA polymerase II general transcription initiation factor binding; GO:0004402,histone acetyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006325,chromatin organization; GO:0006366,transcription by RNA polymerase II; GO:0009416,response to light stimulus; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0016570,histone modification; GO:0016573,histone acetylation; GO:0017025,TBP-class protein binding; GO:0051123,RNA polymerase II preinitiation complex assembly;	TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]; K03125;	NP_001327580.1 histone acetyltransferase of the TAFII250 family 2 [Arabidopsis thaliana]	86	60	66	65
AT3G19240	transcription only	1.1525308470770808	0.16664171248120882	AT3G19240	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm;	--	NP_188555.1 Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]	140	118	111	81
AT3G20300	transcription only	-4.51106860590543	0.5172388519758608	AT3G20300	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_566658.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]	29	19	25	20
AT3G21360	transcription only	-2.150732587190885	-0.02278970594060111	AT3G21360	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_188773.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	30	40	25	21
AT3G21750	transcription only	-1.0776159250730937	-0.13701869421484106	AT3G21750	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_188812.1 UDP-glucosyl transferase 71B1 [Arabidopsis thaliana]	303	344	218	174
AT3G21790	transcription only	-1.4068030711922486	0.18820120938223475	AT3G21790	--	GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	BAB02841.1 UTP-glucose glucosyltransferase [Arabidopsis thaliana]	43	42	40	25
AT3G23490	transcription only	-3.177408972839813	0.1934861207851986	AT3G23490	--	GO:0003677,DNA binding; GO:0005829,cytosol; GO:0008824,cyanate hydratase activity; GO:0009439,cyanate metabolic process; GO:0009440,cyanate catabolic process; GO:0009651,response to salt stress; GO:0016020,membrane; GO:0016829,lyase activity; GO:0042802,identical protein binding;	cynS; cyanate lyase [EC:4.2.1.104]; K01725;	NP_001327887.1 cyanase [Arabidopsis thaliana]	107	133	126	62
AT3G23540	transcription only	-1.229430133270655	-0.14785990178169106	AT3G23540	--	GO:0003674,molecular_function;	--	NP_001327699.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	71	68	51	33
AT3G24730	transcription only	-1.5367575995512854	0.704057608510932	AT3G24730	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006376,mRNA splice site selection; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex;	--	NP_189117.2 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]	18	7	13	13
AT3G25520	transcription only	1.182926805684828	0.33650782459045536	AT3G25520	--	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0006913,nucleocytoplasmic transport; GO:0008097,5S rRNA binding; GO:0009507,chloroplast; GO:0009955,adaxial/abaxial pattern specification; GO:0009965,leaf morphogenesis; GO:0010015,root morphogenesis; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:0051301,cell division; GO:1990904,ribonucleoprotein complex;	RP-L5e, RPL5; large subunit ribosomal protein L5e; K02932;	NP_001327862.1 ribosomal protein L5 [Arabidopsis thaliana]	2163	1929	1858	1549
AT3G25590	transcription only	1.2070443464705984	-0.06052960819639162	AT3G25590	--	GO:0003674,molecular_function;	--	NP_189187.2 micronuclear linker histone polyprotein-like protein [Arabidopsis thaliana]	12	38	19	14
AT3G26570	transcription only	1.1443114307098268	0.03095326108967394	AT3G26570	--	GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0005829,cytosol; GO:0006817,phosphate ion transport; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009673,low-affinity phosphate transmembrane transporter activity; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0015293,symporter activity; GO:0016020,membrane; GO:0035435,phosphate ion transmembrane transport; GO:0055085,transmembrane transport;	--	NP_189289.2 phosphate transporter 2;1 [Arabidopsis thaliana]	622	397	359	318
AT3G27180	transcription only	1.8897940746231956	0.8397353424560519	AT3G27180	--	GO:0001510,RNA methylation; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_189354.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	58	71	70	81
AT3G27230	transcription only	1.1985971348596072	-0.7271671836510373	AT3G27230	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0032259,methylation;	--	NP_566813.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	150	124	54	54
AT3G27350	transcription only	1.581697883452136	0.3172690099118146	AT3G27350	--	--	--	NP_001189988.1 transcriptional regulator ATRX-like protein [Arabidopsis thaliana]	78	48	59	44
AT3G27700	transcription only	-1.0424289361094237	0.34374626543072767	AT3G27700	--	GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0046872,metal ion binding;	--	NP_189407.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	74	48	39	59
AT3G28180	transcription only	-1.0020639025670224	-0.4670784128051725	AT3G28180	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042803,protein homodimerization activity; GO:0048868,pollen tube development; GO:0071555,cell wall organization; GO:0099402,plant organ development;	--	NP_566835.1 Cellulose-synthase-like C4 [Arabidopsis thaliana]	232	161	128	63
AT3G28900	transcription only	7.53458528602676	0.3339837761989158	AT3G28900	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042254,ribosome biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L34e, RPL34; large subunit ribosomal protein L34e; K02915;	NP_189532.1 Ribosomal protein L34e superfamily protein [Arabidopsis thaliana]	290	263	277	188
AT3G28930	transcription only	-1.6445976645454348	0.32251863225826327	AT3G28930	--	GO:0005829,cytosol; GO:0009617,response to bacterium; GO:0016740,transferase activity; GO:0016746,acyltransferase activity;	--	NP_001326184.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]	57	31	52	22
AT3G43270	transcription only	1.260208819931186	-0.01851469302943144	AT3G43270	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_189913.3 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	1050	941	684	608
AT3G44110	transcription only	-1.0950558312959464	-0.2597222618205494	AT3G44110	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009911,positive regulation of flower development; GO:0016020,membrane; GO:0030544,Hsp70 protein binding; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0043462,regulation of ATP-dependent activity; GO:0046872,metal ion binding; GO:0048573,photoperiodism, flowering; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	DNAJA2; DnaJ homolog subfamily A member 2; K09503;	NP_189997.1 DNAJ homologue 3 [Arabidopsis thaliana]	1204	1025	560	642
AT3G45140	transcription only	-1.2246857583557869	0.32829079339063444	AT3G45140	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0009695,jasmonic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0009941,chloroplast envelope; GO:0010597,green leaf volatile biosynthetic process; GO:0016165,linoleate 13S-lipoxygenase activity; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0031408,oxylipin biosynthetic process; GO:0034440,lipid oxidation; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0080027,response to herbivore; GO:1901149,salicylic acid binding;	LOX2S; lipoxygenase [EC:1.13.11.12]; K00454;	NP_566875.1 lipoxygenase 2 [Arabidopsis thaliana]	7418	7766	7296	5431
AT3G45290	transcription only	-1.2582462022857337	-0.4217024508950859	AT3G45290	--	GO:0005516,calmodulin binding; GO:0006952,defense response; GO:0009607,response to biotic stimulus; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_566879.1 Seven transmembrane MLO family protein [Arabidopsis thaliana]	44	39	23	18
AT3G46550	transcription only	-1.0927246807314317	-0.0094322935311633	AT3G46550	--	GO:0005886,plasma membrane; GO:0007155,cell adhesion; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009897,external side of plasma membrane; GO:0010192,mucilage biosynthetic process; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0048354,mucilage biosynthetic process involved in seed coat development;	--	NP_190239.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	231	141	158	88
AT3G46600	transcription only	-1.3938600931790708	-0.4666481566190958	AT3G46600	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_001319695.1 GRAS family transcription factor [Arabidopsis thaliana]	60	61	26	31
AT3G46610	transcription only	1.785650788919006	0.5320456645405137	AT3G46610	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006413,translational initiation; GO:0008494,translation activator activity; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0032544,plastid translation; GO:0043022,ribosome binding; GO:0045727,positive regulation of translation;	--	NP_001319696.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	40	21	35	23
AT3G46620	transcription only	-1.8822305166924869	0.3627422695504858	AT3G46620	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051865,protein autoubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_190246.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	109	80	85	74
AT3G46640	transcription only	-1.9816116929361136	0.22850373258601508	AT3G46640	G2-like	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0010468,regulation of gene expression; GO:0042752,regulation of circadian rhythm; GO:0042753,positive regulation of circadian rhythm; GO:0048511,rhythmic process;	--	NP_001030823.1 Homeodomain-like superfamily protein [Arabidopsis thaliana]	160	147	127	110
AT3G47060	transcription only	-1.037610987138367	-0.17121984125028397	AT3G47060	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	--	NP_566889.1 FTSH protease 7 [Arabidopsis thaliana]	76	93	60	41
AT3G47590	transcription only	-1.838498929744832	-0.13695437008542305	AT3G47590	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0008150,biological_process;	K06889; uncharacterized protein; K06889;	NP_190343.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	82	111	57	59
AT3G48330	transcription only	1.2494668211517732	-0.00465413316245096	AT3G48330	--	GO:0004719,protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; GO:0005737,cytoplasm; GO:0006479,protein methylation; GO:0007568,aging; GO:0008168,methyltransferase activity; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009845,seed germination; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0030091,protein repair; GO:0032259,methylation; GO:0036211,protein modification process;	E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]; K00573;	NP_680112.2 protein-l-isoaspartate methyltransferase 1 [Arabidopsis thaliana]	125	98	74	71
AT3G49601	transcription only	-1.116996274698065	0.0745003496130793	AT3G49601	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_001118799.1 pre-mRNA-splicing factor [Arabidopsis thaliana]	266	257	182	179
AT3G49940	transcription only	2.2230343019608103	0.17329550409796624	AT3G49940	LBD	GO:0005515,protein binding; GO:0010468,regulation of gene expression;	--	NP_190563.1 LOB domain-containing protein 38 [Arabidopsis thaliana]	17	26	15	17
AT3G50960	transcription only	1.5634991846122006	-0.23111145554885687	AT3G50960	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005874,microtubule; GO:0043622,cortical microtubule organization; GO:0048487,beta-tubulin binding;	--	NP_001325881.1 thioredoxin domain PLP3A-like protein [Arabidopsis thaliana]	31	41	28	14
AT3G52100	transcription only	-1.250332719337807	-0.2190052459132668	AT3G52100	--	GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0006351,DNA-templated transcription; GO:0009506,plasmodesma; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_001327259.1 RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]	37	54	32	21
AT3G52230	transcription only	-1.0275445839618462	0.8682761232373197	AT3G52230	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope;	--	NP_566963.1 hypothetical protein AT3G52230 [Arabidopsis thaliana]	207	145	241	182
AT3G52380	transcription only	1.000895831963273	-0.1888015887757805	AT3G52380	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0031425,chloroplast RNA processing; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_190806.1 chloroplast RNA-binding protein 33 [Arabidopsis thaliana]	199	176	113	103
AT3G53380	transcription only	-1.5806518119808548	-0.23737256108165147	AT3G53380	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_190906.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana]	70	60	47	27
AT3G53950	transcription only	-1.2389731060966327	0.05283244693072992	AT3G53950	--	GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190963.1 glyoxal oxidase-related protein [Arabidopsis thaliana]	97	85	60	63
AT3G54600	transcription only	-2.3942947764863605	0.5258341838954474	AT3G54600	--	GO:0003674,molecular_function; GO:0005829,cytosol;	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881;	NP_191023.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	74	69	69	66
AT3G54980	transcription only	1.0077872306865665	-0.0681479324231393	AT3G54980	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_001325869.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	82	54	42	42
AT3G56960	transcription only	3.509027293615188	-0.5906450636493759	AT3G56960	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0007164,establishment of tissue polarity; GO:0009827,plant-type cell wall modification; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016307,phosphatidylinositol phosphate kinase activity; GO:0016308,1-phosphatidylinositol-4-phosphate 5-kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0044238,primary metabolic process; GO:0046488,phosphatidylinositol metabolic process; GO:0046854,phosphatidylinositol phosphate biosynthetic process; GO:0071704,organic substance metabolic process; GO:0090406,pollen tube;	PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]; K00889;	KAG7634709.1 Phosphatidylinositol-4-phosphate 5-kinase core [Arabidopsis suecica]	36	38	9	22
AT3G56990	transcription only	1.4877449560040212	0.5929738556716003	AT3G56990	--	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009561,megagametogenesis; GO:0016020,membrane; GO:0032040,small-subunit processome;	--	NP_191258.2 embryo sac development arrest 7 [Arabidopsis thaliana]	126	84	128	82
AT3G57710	transcription only	-1.2463715503719606	-0.14912826064662943	AT3G57710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007166,cell surface receptor signaling pathway; GO:0009266,response to temperature stimulus; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:1900426,positive regulation of defense response to bacterium;	--	NP_191330.1 Protein kinase superfamily protein [Arabidopsis thaliana]	48	34	24	24
AT3G57830	transcription only	-1.3077996819940716	-0.34703028487977333	AT3G57830	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001326829.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	67	75	45	30
AT3G57910	transcription only	-1.191549602526204	-0.7048112630430613	AT3G57910	--	GO:0000776,kinetochore; GO:0003676,nucleic acid binding; GO:0008150,biological_process;	--	NP_191350.1 D111/G-patch domain-containing protein [Arabidopsis thaliana]	36	18	9	12
AT3G61070	transcription only	1.6385183191482742	-0.1357343714289595	AT3G61070	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0005829,cytosol; GO:0007031,peroxisome organization; GO:0007623,circadian rhythm; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size;	--	NP_001078322.1 peroxin 11E [Arabidopsis thaliana]	180	235	147	107
AT3G61470	transcription only	-1.1942982724697089	-0.31895309839460684	AT3G61470	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA2; light-harvesting complex I chlorophyll a/b binding protein 2; K08908;	NP_191706.2 photosystem I light harvesting complex protein [Arabidopsis thaliana]	2075	1979	1196	957
AT3G61540	transcription only	-3.376926107849828	0.401234551474238	AT3G61540	--	GO:0004177,aminopeptidase activity; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_191713.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	84	92	88	67
AT3G62290	transcription only	-1.3738730399514354	-0.1898761285858855	AT3G62290	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0016004,phospholipase activator activity; GO:0016192,vesicle-mediated transport; GO:0050790,regulation of catalytic activity;	ARF1_2; ADP-ribosylation factor 1/2; K07937;	NP_001190161.1 ADP-ribosylation factor A1E [Arabidopsis thaliana]	1132	1056	691	576
AT3G62650	transcription only	1.0093953923311123	0.30827275947616545	AT3G62650	--	--	--	NP_191824.1 hypothetical protein AT3G62650 [Arabidopsis thaliana]	435	388	397	281
AT3G62720	transcription only	-1.593907184389572	0.33585895538839017	AT3G62720	--	GO:0000139,Golgi membrane; GO:0000271,polysaccharide biosynthetic process; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006486,protein glycosylation; GO:0009969,xyloglucan biosynthetic process; GO:0010411,xyloglucan metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0033843,xyloglucan 6-xylosyltransferase activity; GO:0035252,UDP-xylosyltransferase activity; GO:0046872,metal ion binding;	--	NP_001030917.1 xylosyltransferase 1 [Arabidopsis thaliana]	132	146	122	110
AT3G63130	transcription only	-1.118998627727685	0.13312891307204436	AT3G63130	--	GO:0000911,cytokinesis by cell plate formation; GO:0005096,GTPase activator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0006606,protein import into nucleus; GO:0009504,cell plate; GO:0009524,phragmoplast; GO:0016020,membrane; GO:0031965,nuclear membrane; GO:0032153,cell division site; GO:0050790,regulation of catalytic activity;	RANGAP1; Ran GTPase-activating protein 1; K14319;	NP_001190166.1 RAN GTPase activating protein 1 [Arabidopsis thaliana]	358	318	267	222
AT3G63440	transcription only	-1.2419246692051988	-0.21329955584621324	AT3G63440	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009690,cytokinin metabolic process; GO:0010103,stomatal complex morphogenesis; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding;	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279;	NP_191903.3 cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana]	45	21	21	16
AT3G63450	transcription only	-2.0796018026712586	0.4441479649948421	AT3G63450	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding;	--	NP_001190170.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	38	38	35	33
AT3G63470	transcription only	1.0057583544054345	-0.5212585274001417	AT3G63470	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_191906.1 serine carboxypeptidase-like 40 [Arabidopsis thaliana]	166	171	98	60
AT3G63540	transcription only	-1.415451533171696	-0.3414428478050164	AT3G63540	--	GO:0005509,calcium ion binding; GO:0009523,photosystem II; GO:0009654,photosystem II oxygen evolving complex; GO:0015979,photosynthesis; GO:0019898,extrinsic component of membrane;	--	NP_001190172.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein), partial [Arabidopsis thaliana]	311	256	158	136
AT4G00170	transcription only	4.158207637539667	-0.08508848486036068	AT4G00170	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization;	--	NP_567153.1 Plant VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana]	47	69	28	43
AT4G01037	transcription only	-1.282858618885016	0.3738168761071889	AT4G01037	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015979,photosynthesis;	--	NP_001118908.1 Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]	167	136	124	131
AT4G01070	transcription only	-1.0654733321426662	-0.07127895644717137	AT4G01070	--	GO:0006805,xenobiotic metabolic process; GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0042178,xenobiotic catabolic process; GO:0050505,hydroquinone glucosyltransferase activity;	--	NP_192016.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	195	215	130	127
AT4G01370	transcription only	-1.3207894150933646	-0.24946554237745003	AT4G01370	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0002376,immune system process; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0006972,hyperosmotic response; GO:0007112,male meiosis cytokinesis; GO:0009409,response to cold; GO:0009504,cell plate; GO:0009555,pollen development; GO:0009620,response to fungus; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009861,jasmonic acid and ethylene-dependent systemic resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009868,jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0042539,hypotonic salinity response; GO:0043622,cortical microtubule organization; GO:0045087,innate immune response; GO:0071244,cellular response to carbon dioxide; GO:0090333,regulation of stomatal closure; GO:0106310,protein serine kinase activity;	MPK4; mitogen-activated protein kinase 4 [EC:2.7.11.24]; K20600;	NP_192046.1 MAP kinase 4 [Arabidopsis thaliana]	221	202	134	102
AT4G01690	transcription only	1.202644863209843	-9.929844889879787e-4	AT4G01690	--	GO:0004729,oxygen-dependent protoporphyrinogen oxidase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity;	PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]; K00231;	NP_192078.1 Flavin containing amine oxidoreductase family [Arabidopsis thaliana]	341	304	231	194
AT4G01800	transcription only	1.432338745605671	0.09874209027448888	AT4G01800	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009646,response to absence of light; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010090,trichome morphogenesis; GO:0010109,regulation of photosynthesis; GO:0015031,protein transport; GO:0015462,ABC-type protein transporter activity; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0017038,protein import; GO:0071806,protein transmembrane transport;	secA; preprotein translocase subunit SecA [EC:7.4.2.8]; K03070;	NP_001328302.1 Albino or Glassy Yellow 1 [Arabidopsis thaliana]	461	468	386	278
AT4G01840	transcription only	1.2366537870452388	0.5187474677150423	AT4G01840	--	GO:0005267,potassium channel activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009705,plant-type vacuole membrane; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0022841,potassium ion leak channel activity; GO:0030322,stabilization of membrane potential; GO:0046872,metal ion binding; GO:0071805,potassium ion transmembrane transport;	--	NP_192093.1 Ca2+ activated outward rectifying K+ channel 5 [Arabidopsis thaliana]	20	29	31	17
AT4G02130	transcription only	-1.9128502750003928	0.0843454376273678	AT4G02130	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	--	NP_001031573.1 galacturonosyltransferase 6 [Arabidopsis thaliana]	90	99	67	65
AT4G02440	transcription only	1.6109402162475983	0.29543290267566863	AT4G02440	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009585,red, far-red light phototransduction; GO:0010017,red or far-red light signaling pathway; GO:0010099,regulation of photomorphogenesis; GO:0016567,protein ubiquitination; GO:0048366,leaf development; GO:0048573,photoperiodism, flowering;	--	NP_192153.1 F-box family protein [Arabidopsis thaliana]	88	96	93	59
AT4G02610	transcription only	1.281783492808904	0.4034266560809128	AT4G02610	--	GO:0000162,tryptophan biosynthetic process; GO:0004834,tryptophan synthase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009851,auxin biosynthetic process; GO:0016829,lyase activity; GO:0033984,indole-3-glycerol-phosphate lyase activity;	trpA; tryptophan synthase alpha chain [EC:4.2.1.20]; K01695;	NP_192170.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	209	140	176	128
AT4G05180	transcription only	-1.235842319427374	-0.927799679803194	AT4G05180	--	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast;	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901;	NP_001319873.1 photosystem II subunit Q-2 [Arabidopsis thaliana]	2245	1949	819	639
AT4G05190	transcription only	-1.3863551283434072	-0.40961949152468274	AT4G05190	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0007018,microtubule-based movement; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0016887,ATP hydrolysis activity; GO:0051225,spindle assembly; GO:0051301,cell division;	--	NP_192428.2 kinesin 5 [Arabidopsis thaliana]	83	82	60	25
AT4G09000	transcription only	-1.1536646053913286	-0.6006933240336635	AT4G09000	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016020,membrane; GO:0019222,regulation of metabolic process; GO:0045309,protein phosphorylated amino acid binding; GO:0048046,apoplast;	YWHAE; 14-3-3 protein epsilon; K06630;	NP_001154216.1 general regulatory factor 1 [Arabidopsis thaliana]	1586	1552	777	598
AT4G11450	transcription only	1.0272961408343724	0.5972108858097392	AT4G11450	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_192884.1 bromo-adjacent domain protein, putative (DUF3527) [Arabidopsis thaliana]	50	23	47	26
AT4G12290	transcription only	-1.1483324728264206	0.1242983965479565	AT4G12290	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009753,response to jasmonic acid; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; GO:1903426,regulation of reactive oxygen species biosynthetic process;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_192966.5 Copper amine oxidase family protein [Arabidopsis thaliana]	756	636	561	441
AT4G12300	transcription only	-1.2625254179875212	-0.25453296777579776	AT4G12300	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_192967.1 cytochrome P450, family 706, subfamily A, polypeptide 4 [Arabidopsis thaliana]	109	89	53	55
AT4G12800	transcription only	-1.8912666491766992	0.4272083227250229	AT4G12800	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0031969,chloroplast membrane;	psaL; photosystem I subunit XI; K02699;	NP_001328992.1 photosystem I subunit l [Arabidopsis thaliana]	3690	3748	3811	2855
AT4G12840	transcription only	-1.3811190093882126	-0.16577280583590534	AT4G12840	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001154227.2 GTPase Der (DUF707) [Arabidopsis thaliana]	57	30	31	20
AT4G13160	transcription only	2.494012283094066	0.47944491138536816	AT4G13160	--	GO:0004674,protein serine/threonine kinase activity; GO:0005575,cellular_component; GO:0016020,membrane; GO:0046777,protein autophosphorylation; GO:0080115,myosin XI tail binding;	--	NP_193052.1 zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]	21	9	25	4
AT4G13510	transcription only	-1.2240797741760092	-0.08151585655163823	AT4G13510	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006812,cation transport; GO:0008519,ammonium transmembrane transporter activity; GO:0009506,plasmodesma; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0043621,protein self-association; GO:0051258,protein polymerization; GO:0071705,nitrogen compound transport; GO:0072488,ammonium transmembrane transport; GO:0080181,lateral root branching; GO:0097272,ammonium homeostasis; GO:0110067,ammonium transmembrane transporter complex;	--	NP_193087.1 ammonium transporter 1;1 [Arabidopsis thaliana]	507	401	324	243
AT4G13920	transcription only	-1.122997680206749	-0.6977358463089904	AT4G13920	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_567412.1 receptor like protein 50 [Arabidopsis thaliana]	15	13	4	7
AT4G13940	transcription only	-1.116996274698065	-0.4685564542777668	AT4G13940	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004013,adenosylhomocysteinase activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006346,DNA methylation-dependent heterochromatin formation; GO:0006730,one-carbon metabolic process; GO:0009506,plasmodesma; GO:0009793,embryo development ending in seed dormancy; GO:0016441,post-transcriptional gene silencing; GO:0016787,hydrolase activity; GO:0033353,S-adenosylmethionine cycle;	E3.3.1.1, ahcY; adenosylhomocysteinase [EC:3.3.1.1]; K01251;	NP_193130.1 S-adenosyl-L-homocysteine hydrolase [Arabidopsis thaliana]	8766	8067	4602	3475
AT4G14120	transcription only	-1.314557015585479	-0.4245912091498477	AT4G14120	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_193148.2 hypothetical protein AT4G14120 [Arabidopsis thaliana]	40	19	13	15
AT4G15490	transcription only	-1.6281492440986494	-0.620603775654229	AT4G15490	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0047218,hydroxycinnamate 4-beta-glucosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0050412,cinnamate beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_193284.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	116	110	52	45
AT4G15545	transcription only	-2.339570287998444	-0.1666729798759522	AT4G15545	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0010168,ER body; GO:0043621,protein self-association; GO:0080119,ER body organization;	--	NP_567470.1 PH-response transcription factor [Arabidopsis thaliana]	49	52	45	17
AT4G15630	transcription only	-1.1558315117270557	0.0712241422858237	AT4G15630	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043424,protein histidine kinase binding; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_567473.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	82	63	49	50
AT4G15780	transcription only	-1.584608408122028	0.02383171454014878	AT4G15780	--	GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport;	--	NP_193313.6 vesicle-associated membrane protein 724 [Arabidopsis thaliana]	30	29	18	21
AT4G17870	transcription only	1.1816151334292109	-0.5625248170235017	AT4G17870	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0044389,ubiquitin-like protein ligase binding; GO:0062049,protein phosphatase inhibitor complex; GO:0080163,regulation of protein serine/threonine phosphatase activity; GO:1902584,positive regulation of response to water deprivation;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_193521.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	69	89	53	21
AT4G18100	transcription only	1.1693019334153265	-0.07571912516607061	AT4G18100	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L32e, RPL32; large subunit ribosomal protein L32e; K02912;	NP_193544.1 Ribosomal protein L32e [Arabidopsis thaliana]	1067	928	688	561
AT4G18740	transcription only	1.4516324999030377	-0.1488972087355923	AT4G18740	--	GO:0003674,molecular_function; GO:0006353,DNA-templated transcription termination;	--	NP_974569.1 Rho termination factor [Arabidopsis thaliana]	23	10	4	14
AT4G19120	transcription only	-2.236659252293311	0.02817825757065922	AT4G19120	--	GO:0000138,Golgi trans cisterna; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_567575.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	634	635	520	347
AT4G21770	transcription only	1.0404051293998895	0.03942417421431228	AT4G21770	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_193908.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	65	25	35	25
AT4G21780	transcription only	-1.9127404306288232	0.5808235795486599	AT4G21780	--	--	--	NP_001328477.1 hypothetical protein AT4G21780 [Arabidopsis thaliana]	7	6	8	5
AT4G21810	transcription only	1.207621444938518	-0.9666559844185963	AT4G21810	--	GO:0000839,Hrd1p ubiquitin ligase ERAD-L complex; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006950,response to stress; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0051787,misfolded protein binding; GO:1990381,ubiquitin-specific protease binding;	DERL2_3; Derlin-2/3; K13989;	NP_193912.3 DERLIN-2.1 [Arabidopsis thaliana]	91	117	55	19
AT4G22320	transcription only	1.0412425208632414	-0.9499072158613652	AT4G22320	--	GO:0008150,biological_process;	--	NP_001190798.1 golgin family A protein [Arabidopsis thaliana]	39	40	20	8
AT4G22530	transcription only	1.8317717455005869	-0.21261285547008407	AT4G22530	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_001329270.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	68	66	50	28
AT4G23530	transcription only	1.0494668584659863	-0.40504550077711865	AT4G23530	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_194084.1 ROH1, putative (DUF793) [Arabidopsis thaliana]	45	30	20	17
AT4G23800	transcription only	2.8803137383378874	-0.19435614351267969	AT4G23800	--	GO:0000793,condensed chromosome; GO:0000794,condensed nuclear chromosome; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_194111.1 HMG (high mobility group) box protein [Arabidopsis thaliana]	475	404	276	230
AT4G24350	transcription only	1.4802879906093849	-0.8048467485565796	AT4G24350	--	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0009116,nucleoside metabolic process; GO:0009611,response to wounding;	--	NP_194166.2 Phosphorylase superfamily protein [Arabidopsis thaliana]	26	18	1	14
AT4G24370	transcription only	-1.9913002592945384	-0.2455060848147601	AT4G24370	--	GO:0005515,protein binding;	--	NP_567700.1 hypothetical protein AT4G24370 [Arabidopsis thaliana]	58	41	37	19
AT4G24380	transcription only	-1.0907911411139728	-0.7971561893310635	AT4G24380	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_567701.1 dihydrofolate reductase [Arabidopsis thaliana]	446	398	200	125
AT4G26230	transcription only	1.5522745024353823	0.590160211335932	AT4G26230	--	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L31e, RPL31; large subunit ribosomal protein L31e; K02910;	NP_194353.1 Ribosomal protein L31e family protein [Arabidopsis thaliana]	268	227	295	201
AT4G26240	transcription only	1.2425405956820397	0.1575237958834601	AT4G26240	--	GO:0016020,membrane;	--	NP_567740.1 histone-lysine N-methyltransferase [Arabidopsis thaliana]	83	54	50	49
AT4G26300	transcription only	2.08285556983532	0.5149884934914053	AT4G26300	--	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004814,arginine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006420,arginyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0016874,ligase activity; GO:0048608,reproductive structure development;	RARS, argS; arginyl-tRNA synthetase [EC:6.1.1.19]; K01887;	NP_194360.1 Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]	424	301	343	330
AT4G26600	transcription only	-1.4329550920894767	0.9214110961200696	AT4G26600	--	GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; GO:0070475,rRNA base methylation;	--	NP_001328282.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	84	79	122	84
AT4G26790	transcription only	-1.0294748868454515	0.09627041242762968	AT4G26790	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_567758.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	70	101	70	53
AT4G27950	transcription only	-1.330053078025928	0.1466383534716307	AT4G27950	ERF	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development;	--	NP_194524.2 cytokinin response factor 4 [Arabidopsis thaliana]	50	24	34	20
AT4G28160	transcription only	-1.2598874875448938	0.4638473818356169	AT4G28160	--	--	--	NP_194545.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	10	3	9	3
AT4G29380	transcription only	1.3516106172118891	0.6091352511719477	AT4G29380	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005770,late endosome; GO:0005794,Golgi apparatus; GO:0005942,phosphatidylinositol 3-kinase complex; GO:0006468,protein phosphorylation; GO:0006623,protein targeting to vacuole; GO:0006914,autophagy; GO:0009555,pollen development; GO:0009846,pollen germination; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016236,macroautophagy; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030242,autophagy of peroxisome; GO:0032991,protein-containing complex; GO:0034271,phosphatidylinositol 3-kinase complex, class III, type I; GO:0034272,phosphatidylinositol 3-kinase complex, class III, type II; GO:0045324,late endosome to vacuole transport; GO:0048015,phosphatidylinositol-mediated signaling; GO:0071561,nucleus-vacuole junction; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:0106310,protein serine kinase activity;	PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]; K08333;	NP_194667.1 protein kinase family protein / WD-40 repeat family protein [Arabidopsis thaliana]	115	156	155	122
AT4G29880	transcription only	-1.7507797230447009	0.5356946560828991	AT4G29880	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_194717.2 plant intracellular ras group-related LRR 7 [Arabidopsis thaliana]	11	9	10	9
AT4G30480	transcription only	1.139210204115502	0.4001637081943027	AT4G30480	--	GO:0005515,protein binding; GO:0051879,Hsp90 protein binding;	--	NP_001031756.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	76	54	54	57
AT4G31700	transcription only	1.874778431056474	0.6632416439339737	AT4G31700	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S6e, RPS6; small subunit ribosomal protein S6e; K02991;	NP_194898.1 ribosomal protein S6 [Arabidopsis thaliana]	1698	1324	1782	1374
AT4G32450	transcription only	1.0941833994094123	-0.5235779432855547	AT4G32450	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle;	--	NP_194971.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	14	6	5	4
AT4G33620	transcription only	-1.4370861959599308	0.43111545483448127	AT4G33620	--	GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0070139,SUMO-specific endopeptidase activity;	--	NP_001320126.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	24	15	17	17
AT4G34138	transcription only	1.7592151971797183	0.30484517125604954	AT4G34138	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567955.1 UDP-glucosyl transferase 73B1 [Arabidopsis thaliana]	54	40	46	31
AT4G34670	transcription only	1.8209288783346311	-0.04895618140453176	AT4G34670	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae; K02984;	NP_195193.1 Ribosomal protein S3Ae [Arabidopsis thaliana]	2426	2334	1723	1332
AT4G36140	transcription only	1.4122335873725314	0.8043083337878444	AT4G36140	--	GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043130,ubiquitin binding; GO:0043531,ADP binding;	--	NP_195337.1 disease resistance protein (TIR-NBS-LRR class) [Arabidopsis thaliana]	16	23	22	23
AT4G36380	transcription only	1.5068258424443246	0.1429589949734505	AT4G36380	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0009965,leaf morphogenesis; GO:0010268,brassinosteroid homeostasis; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042814,monopolar cell growth; GO:0046872,metal ion binding; GO:0048366,leaf development; GO:0048441,petal development; GO:0048443,stamen development; GO:0102097,(22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity; GO:0102136,3-epi-6-deoxocathasterone C-23 hydroxylase activity;	CYP90C1, ROT3; 3-epi-6-deoxocathasterone 23-monooxygenase [EC:1.14.14.147]; K12637;	NP_568002.1 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	72	90	99	27
AT4G36400	transcription only	1.0410077062363312	-0.02271536702807976	AT4G36400	--	GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0009853,photorespiration; GO:0010230,alternative respiration; GO:0016491,oxidoreductase activity; GO:0047545,2-hydroxyglutarate dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0051990,(R)-2-hydroxyglutarate dehydrogenase activity; GO:0071949,FAD binding;	D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39]; K18204;	NP_001320151.1 FAD-linked oxidases family protein [Arabidopsis thaliana]	171	160	116	99
AT4G36960	transcription only	1.0698982814446223	-0.14254388770242013	AT4G36960	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:1990904,ribonucleoprotein complex;	MSI; RNA-binding protein Musashi; K14411;	NP_001154290.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	69	88	47	47
AT4G37200	transcription only	1.3231866597594089	0.01080360904530801	AT4G37200	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0031977,thylakoid lumen;	--	NP_195437.1 Thioredoxin superfamily protein [Arabidopsis thaliana]	74	81	69	37
AT4G37260	transcription only	-1.6646085762117535	0.1957258386200313	AT4G37260	MYB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0019760,glucosinolate metabolic process; GO:1901001,negative regulation of response to salt stress;	--	NP_195443.1 myb domain protein 73 [Arabidopsis thaliana]	223	230	194	151
AT4G37330	transcription only	-1.2472572463130496	-0.2764313701684432	AT4G37330	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_195450.1 cytochrome P450, family 81, subfamily D, polypeptide 4 [Arabidopsis thaliana]	76	76	34	47
AT4G37670	transcription only	1.967136001237051	-0.09736613526009254	AT4G37670	--	GO:0004042,acetyl-CoA:L-glutamate N-acetyltransferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006526,arginine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0103045,methione N-acyltransferase activity;	argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]; K14682;	NP_974701.1 N-acetyl-l-glutamate synthase 2 [Arabidopsis thaliana]	24	21	22	7
AT4G37870	transcription only	-1.26734160060158	-0.3345873332734464	AT4G37870	--	GO:0000166,nucleotide binding; GO:0004611,phosphoenolpyruvate carboxykinase activity; GO:0004612,phosphoenolpyruvate carboxykinase (ATP) activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0016036,cellular response to phosphate starvation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0017076,purine nucleotide binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus;	E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]; K01610;	NP_195500.1 phosphoenolpyruvate carboxykinase 1 [Arabidopsis thaliana]	863	720	444	381
AT4G37930	transcription only	-1.236388503150952	-0.999651452475716	AT4G37930	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004372,glycine hydroxymethyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006544,glycine metabolic process; GO:0006563,L-serine metabolic process; GO:0006565,L-serine catabolic process; GO:0006730,one-carbon metabolic process; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009626,plant-type hypersensitive response; GO:0009853,photorespiration; GO:0010319,stromule; GO:0016740,transferase activity; GO:0019264,glycine biosynthetic process from serine; GO:0022626,cytosolic ribosome; GO:0030170,pyridoxal phosphate binding; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046655,folic acid metabolic process; GO:0048046,apoplast; GO:0070905,serine binding;	glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1]; K00600;	NP_195506.1 serine transhydroxymethyltransferase 1 [Arabidopsis thaliana]	2791	2586	989	791
AT4G38440	transcription only	-1.7138437066627483	0.1368503508760161	AT4G38440	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0030154,cell differentiation;	--	NP_195557.2 RPAP1-like, carboxy-terminal protein [Arabidopsis thaliana]	130	117	123	61
AT4G38770	transcription only	-1.2609613517899303	0.07541518754409543	AT4G38770	--	GO:0005576,extracellular region;	--	NP_195588.1 proline-rich protein 4 [Arabidopsis thaliana]	2250	2171	1797	1307
AT4G39200	transcription only	1.1443114307098268	0.27140857719525197	AT4G39200	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-S25e, RPS25; small subunit ribosomal protein S25e; K02975;	NP_195631.1 Ribosomal protein S25 family protein [Arabidopsis thaliana]	216	260	206	176
AT4G39960	transcription only	-1.4910599645327678	0.02149957467188096	AT4G39960	--	GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009941,chloroplast envelope; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_001329618.1 Molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana]	201	234	126	161
AT5G01180	transcription only	1.7733531080766805	-0.470007211249975	AT5G01180	--	GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035442,dipeptide transmembrane transport; GO:0042937,tripeptide transmembrane transporter activity; GO:0042938,dipeptide transport; GO:0042939,tripeptide transport; GO:0055085,transmembrane transport; GO:0071916,dipeptide transmembrane transporter activity;	--	NP_001331271.1 peptide transporter 5 [Arabidopsis thaliana]	70	77	25	43
AT5G02500	transcription only	-1.288091691335166	0.04669905295571873	AT5G02500	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0006952,defense response; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0010187,negative regulation of seed germination; GO:0010286,heat acclimation; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0042742,defense response to bacterium; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0090332,stomatal closure; GO:0098542,defense response to other organism; GO:0140662,ATP-dependent protein folding chaperone;	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283;	NP_195870.1 heat shock cognate protein 70-1 [Arabidopsis thaliana]	11030	9043	7633	6039
AT5G02770	transcription only	-1.0589587450732796	-0.4338537198418711	AT5G02770	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0051028,mRNA transport;	--	NP_195897.1 Protein MODIFIER OF SNC1 11 [Arabidopsis thaliana]	141	149	81	62
AT5G02820	transcription only	-2.317505855192873	0.05718829786389882	AT5G02820	--	GO:0000166,nucleotide binding; GO:0000228,nuclear chromosome; GO:0000287,magnesium ion binding; GO:0000706,meiotic DNA double-strand break processing; GO:0003677,DNA binding; GO:0003824,catalytic activity; GO:0003916,DNA topoisomerase activity; GO:0003918,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006259,DNA metabolic process; GO:0006265,DNA topological change; GO:0007131,reciprocal meiotic recombination; GO:0009330,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex; GO:0009957,epidermal cell fate specification; GO:0016853,isomerase activity; GO:0042138,meiotic DNA double-strand break formation; GO:0042802,identical protein binding; GO:0046872,metal ion binding;	SPO11; meiotic recombination protein SPO11; K10878;	NP_195902.1 Spo11/DNA topoisomerase VI, subunit A protein [Arabidopsis thaliana]	55	39	40	25
AT5G02890	transcription only	-1.2112622248514862	-0.18409326279513535	AT5G02890	--	GO:0005575,cellular_component; GO:0010025,wax biosynthetic process; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0042759,long-chain fatty acid biosynthetic process;	--	NP_195909.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	90	57	49	36
AT5G03140	transcription only	-2.0170760641188505	-0.7676156471130487	AT5G03140	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195934.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana]	20	31	16	5
AT5G03200	transcription only	-1.2124490493880569	-0.2550363705490886	AT5G03200	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_195940.1 RING/U-box superfamily protein [Arabidopsis thaliana]	47	46	25	26
AT5G03240	transcription only	-1.6608113017035029	-0.21791068658720508	AT5G03240	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010224,response to UV-B; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	NP_001031824.1 polyubiquitin 3 [Arabidopsis thaliana]	1923	1937	1230	974
AT5G03620	transcription only	-1.5073074827262336	-0.6798189520659158	AT5G03620	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_001331443.1 Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	88	65	25	36
AT5G04770	transcription only	1.7733721755600973	-0.5791738749717403	AT5G04770	--	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0015171,amino acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport;	--	NP_196097.1 cationic amino acid transporter 6 [Arabidopsis thaliana]	101	75	35	41
AT5G04930	transcription only	1.0710606040074184	-0.6447760993477739	AT5G04930	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity;	--	NP_568146.1 aminophospholipid ATPase 1 [Arabidopsis thaliana]	162	142	80	50
AT5G05460	transcription only	-2.0005798088215143	0.2839462715256748	AT5G05460	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006491,N-glycan processing; GO:0006517,protein deglycosylation; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033925,mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity;	ENGASE; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]; K01227;	NP_196165.3 Glycosyl hydrolase family 85 [Arabidopsis thaliana]	4	12	11	3
AT5G05860	transcription only	1.8452014914061192	0.8024725743430096	AT5G05860	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009690,cytokinin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042631,cellular response to water deprivation; GO:0047807,cytokinin 7-beta-glucosyltransferase activity; GO:0048316,seed development; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080062,cytokinin 9-beta-glucosyltransferase activity; GO:1900000,regulation of anthocyanin catabolic process; GO:1901527,abscisic acid-activated signaling pathway involved in stomatal movement;	UGT76C1_2; cytokinin-N-glucosyltransferase [EC:2.4.1.-]; K13493;	NP_196205.1 UDP-glucosyl transferase 76C2 [Arabidopsis thaliana]	9	3	5	8
AT5G06260	transcription only	1.2966811477547082	0.01951365058479107	AT5G06260	--	GO:0005509,calcium ion binding;	--	NP_001330374.1 TLD-domain containing nucleolar protein [Arabidopsis thaliana]	59	46	44	27
AT5G06310	transcription only	2.3334478510480627	0.22467436269364072	AT5G06310	--	GO:0000723,telomere maintenance; GO:0000781,chromosome, telomeric region; GO:0000783,nuclear telomere cap complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0010521,telomerase inhibitor activity; GO:0016233,telomere capping; GO:0032210,regulation of telomere maintenance via telomerase; GO:0043047,single-stranded telomeric DNA binding; GO:0051974,negative regulation of telomerase activity; GO:0098505,G-rich strand telomeric DNA binding;	--	NP_196249.2 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	16	14	12	11
AT5G06940	transcription only	-1.822823697543706	0.0655290786443837	AT5G06940	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_196311.1 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	39	42	24	31
AT5G08670	transcription only	1.256419775285335	0.2407921623420168	AT5G08670	--	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0005524,ATP binding; GO:0006754,ATP biosynthetic process; GO:0015986,proton motive force-driven ATP synthesis; GO:0016887,ATP hydrolysis activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046034,ATP metabolic process; GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2]; K02133;	NP_568203.2 ATP synthase alpha/beta family protein [Arabidopsis thaliana]	2043	1881	1613	1436
AT5G09730	transcription only	1.3721453197023394	-0.05371985807154328	AT5G09730	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity;	XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K15920;	NP_196535.1 beta-xylosidase 3 [Arabidopsis thaliana]	1763	1421	1183	850
AT5G09760	transcription only	-1.9487183217044188	0.1089724468873116	AT5G09760	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	--	NP_001331158.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	252	232	211	138
AT5G10790	transcription only	-2.48855807875764	0.4115598064653123	AT5G10790	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006508,proteolysis; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0008270,zinc ion binding; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0070461,SAGA-type complex;	--	NP_001332186.1 ubiquitin-specific protease 22 [Arabidopsis thaliana]	15	42	35	18
AT5G10830	transcription only	-1.1582632414103722	-0.05509015917422558	AT5G10830	--	GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_196644.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	34	14	12	17
AT5G13050	transcription only	1.1853498867594832	0.04312301896789286	AT5G13050	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006952,defense response; GO:0009396,folic acid-containing compound biosynthetic process; GO:0016874,ligase activity; GO:0030272,5-formyltetrahydrofolate cyclo-ligase activity; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046872,metal ion binding;	MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]; K01934;	NP_568284.1 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana]	94	116	62	79
AT5G13090	transcription only	3.0624646778070757	0.942222373014908	AT5G13090	--	--	--	KAG7602071.1 hypothetical protein ISN45_At05g011820 [Arabidopsis thaliana x Arabidopsis arenosa]	33	40	44	48
AT5G13310	transcription only	-2.181858471843021	0.3762565013165146	AT5G13310	--	GO:0003674,molecular_function;	--	NP_001331631.1 hypothetical protein AT5G13310 [Arabidopsis thaliana]	42	35	37	29
AT5G13770	transcription only	1.2800314062839562	0.10396902536576896	AT5G13770	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization;	--	NP_196881.2 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	50	29	34	22
AT5G14740	transcription only	1.2024276864890842	-0.09033639317391068	AT5G14740	--	GO:0004089,carbonate dehydratase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015976,carbon utilization; GO:0016829,lyase activity; GO:0048046,apoplast;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_001031883.1 carbonic anhydrase 2 [Arabidopsis thaliana]	117	120	62	82
AT5G16710	transcription only	-1.874443171735226	-0.3369484591536383	AT5G16710	--	GO:0004364,glutathione transferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009941,chloroplast envelope; GO:0010731,protein glutathionylation; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019852,L-ascorbic acid metabolic process; GO:0033355,ascorbate glutathione cycle; GO:0045174,glutathione dehydrogenase (ascorbate) activity; GO:0098869,cellular oxidant detoxification; GO:0140547,acquisition of seed longevity;	DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18]; K21888;	NP_568336.1 dehydroascorbate reductase 1 [Arabidopsis thaliana]	78	108	51	47
AT5G16930	transcription only	-1.7563854523379705	0.7333572061185829	AT5G16930	--	GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0016887,ATP hydrolysis activity;	--	NP_197195.2 AAA-type ATPase family protein [Arabidopsis thaliana]	68	65	79	67
AT5G16940	transcription only	1.582621741666993	-0.533045108414715	AT5G16940	--	GO:0008150,biological_process; GO:0016829,lyase activity; GO:0016846,carbon-sulfur lyase activity; GO:0046872,metal ion binding;	--	NP_001154714.1 carbon-sulfur lyase [Arabidopsis thaliana]	10	13	8	3
AT5G18140	transcription only	1.3029200295247727	0.4589258751071794	AT5G18140	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042026,protein refolding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_197315.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	17	4	8	10
AT5G18170	transcription only	1.292591378192469	-0.45705515487258663	AT5G18170	--	GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009536,plastid; GO:0009646,response to absence of light; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0050897,cobalt ion binding;	GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261;	NP_197318.1 glutamate dehydrogenase 1 [Arabidopsis thaliana]	137	107	76	43
AT5G18780	transcription only	1.658129956003338	-0.09294108910021932	AT5G18780	--	GO:0005515,protein binding;	--	NP_001190332.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]	30	13	14	12
AT5G19510	transcription only	-1.3738940023992023	0.29597116569460263	AT5G19510	--	GO:0003746,translation elongation factor activity; GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005853,eukaryotic translation elongation factor 1 complex; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity;	--	NP_568375.2 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	1171	1140	1081	807
AT5G19780	transcription only	3.312602016750565	0.09324047904953252	AT5G19780	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0005200,structural constituent of cytoskeleton; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	TUBA; tubulin alpha; K07374;	NP_197478.1 tubulin alpha-3 [Arabidopsis thaliana]	826	836	650	526
AT5G20130	transcription only	-1.1558313501119588	-0.4260182516017258	AT5G20130	--	GO:0003674,molecular_function; GO:0016779,nucleotidyltransferase activity;	--	NP_001332651.1 sulfate adenylyltransferase subunit [Arabidopsis thaliana]	33	55	13	29
AT5G22250	transcription only	1.4436332121736932	0.6085265790152504	AT5G22250	--	GO:0000289,nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0008408,3'-5' exonuclease activity; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0042742,defense response to bacterium; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_197617.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	11	14	17	9
AT5G22650	transcription only	2.2119110986331725	0.19758204154858736	AT5G22650	--	GO:0000325,plant-type vacuole; GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0048364,root development;	--	NP_851056.1 histone deacetylase 2B [Arabidopsis thaliana]	1079	962	849	696
AT5G23590	transcription only	1.293660067087116	0.09828448383403324	AT5G23590	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding;	--	NP_001031930.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	63	50	46	34
AT5G23700	transcription only	1.3004313103308254	-0.04961301690124899	AT5G23700	--	GO:0000911,cytokinesis by cell plate formation; GO:0003674,molecular_function;	--	NP_001330555.1 coiled-coil protein [Arabidopsis thaliana]	9	11	13	1
AT5G24830	transcription only	1.781398987348732	-0.42696534638191613	AT5G24830	--	GO:0005515,protein binding;	--	NP_568460.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	36	13	16	8
AT5G27290	transcription only	-1.2790355713496142	0.24974884153947305	AT5G27290	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_568492.1 stress regulated protein [Arabidopsis thaliana]	23	16	20	11
AT5G28300	transcription only	-1.022491512617095	-0.42775002539881296	AT5G28300	Trihelix	GO:0000987,cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	BAE99307.1 GTL1 - like protein [Arabidopsis thaliana]	98	93	63	33
AT5G28500	transcription only	-1.491055832568387	-0.8783676103992227	AT5G28500	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_198202.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]	344	299	128	103
AT5G35360	transcription only	1.855884807096034	0.05334810763798823	AT5G35360	--	GO:0000166,nucleotide binding; GO:0003989,acetyl-CoA carboxylase activity; GO:0004075,biotin carboxylase activity; GO:0005524,ATP binding; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0046872,metal ion binding; GO:2001295,malonyl-CoA biosynthetic process;	accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]; K01961;	NP_198386.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit [Arabidopsis thaliana]	1668	1583	1279	963
AT5G37500	transcription only	4.462531969625386	0.2092214430400799	AT5G37500	--	GO:0005216,ion channel activity; GO:0005244,voltage-gated ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005267,potassium channel activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009753,response to jasmonic acid; GO:0015075,ion transmembrane transporter activity; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0034765,regulation of ion transmembrane transport; GO:0051592,response to calcium ion; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport;	--	NP_001332118.1 gated outwardly-rectifying K+ channel [Arabidopsis thaliana]	67	59	68	31
AT5G38410	transcription only	-1.123277229447171	-0.5734953776178292	AT5G38410	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016984,ribulose-bisphosphate carboxylase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019904,protein domain specific binding; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]; K01602;	NP_001119331.1 Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]	1732	1687	964	583
AT5G40440	transcription only	-1.7358267572331083	-7.457296737540168e-4	AT5G40440	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0004708,MAP kinase kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009864,induced systemic resistance, jasmonic acid mediated signaling pathway; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0080027,response to herbivore; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2]; K20607;	NP_001332250.1 mitogen-activated protein kinase kinase 3 [Arabidopsis thaliana]	163	127	86	101
AT5G40450	transcription only	-1.521658711645942	0.354622806749518	AT5G40450	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0080171,lytic vacuole organization;	--	NP_001330812.1 A-kinase anchor-like protein [Arabidopsis thaliana]	722	609	619	503
AT5G43130	transcription only	-1.5046042296824471	0.5265312331718054	AT5G43130	--	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0006367,transcription initiation at RNA polymerase II promoter; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0046982,protein heterodimerization activity;	TAF4; transcription initiation factor TFIID subunit 4; K03129;	NP_199127.3 TBP-associated factor 4 [Arabidopsis thaliana]	114	88	109	83
AT5G44040	transcription only	-1.491055832568387	0.06089866785297286	AT5G44040	--	GO:0007142,male meiosis II;	--	NP_199217.1 eisosome SEG2-like protein [Arabidopsis thaliana]	52	40	45	20
AT5G44130	transcription only	-1.9313124806854205	-0.33997156232597847	AT5G44130	--	GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane;	--	NP_199226.1 FASCICLIN-like arabinogalactan protein 13 precursor [Arabidopsis thaliana]	55	47	34	20
AT5G44180	transcription only	5.352927092299957	-0.05127003101195225	AT5G44180	HB-other	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0031010,ISWI-type complex; GO:0043229,intracellular organelle; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001318738.1 Homeodomain-like transcriptional regulator [Arabidopsis thaliana]	161	134	100	87
AT5G44785	transcription only	1.1461418604682	0.43694453596324495	AT5G44785	--	GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005739,mitochondrion; GO:0006260,DNA replication; GO:0006264,mitochondrial DNA replication; GO:0009295,nucleoid; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042645,mitochondrial nucleoid; GO:0051096,positive regulation of helicase activity;	--	NP_568639.1 organellar single-stranded DNA binding protein 3 [Arabidopsis thaliana]	114	75	65	97
AT5G46280	transcription only	-3.3413666902790977	-0.3724856766828392	AT5G46280	--	GO:0000166,nucleotide binding; GO:0000347,THO complex; GO:0000727,double-strand break repair via break-induced replication; GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003697,single-stranded DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006270,DNA replication initiation; GO:0006271,DNA strand elongation involved in DNA replication; GO:0007049,cell cycle; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0042555,MCM complex; GO:1902975,mitotic DNA replication initiation;	MCM3; DNA replication licensing factor MCM3 [EC:3.6.4.12]; K02541;	NP_199440.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	342	297	223	111
AT5G46700	transcription only	2.7355747094191307	-0.3667788235622996	AT5G46700	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009554,megasporogenesis; GO:0009734,auxin-activated signaling pathway; GO:0009933,meristem structural organization; GO:0009934,regulation of meristem structural organization; GO:0009956,radial pattern formation; GO:0010015,root morphogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_199482.1 Tetraspanin family protein [Arabidopsis thaliana]	154	174	81	86
AT5G47580	transcription only	-1.3773801249621582	-0.10810863444044708	AT5G47580	--	GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_199569.1 transmembrane protein [Arabidopsis thaliana]	15	18	9	11
AT5G47970	transcription only	2.0437068161976977	0.6514507052710974	AT5G47970	--	GO:0002943,tRNA dihydrouridine synthesis; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008033,tRNA processing; GO:0009524,phragmoplast; GO:0016491,oxidoreductase activity; GO:0017150,tRNA dihydrouridine synthase activity; GO:0050660,flavin adenine dinucleotide binding;	--	NP_001078731.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	70	87	83	80
AT5G49100	transcription only	-1.6570888540530453	0.18040985112439545	AT5G49100	--	--	--	NP_568706.1 vitellogenin-like protein [Arabidopsis thaliana]	130	97	88	80
AT5G49660	transcription only	-1.0123759295780277	-0.12354634268930256	AT5G49660	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010051,xylem and phloem pattern formation; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0017046,peptide hormone binding; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0042277,peptide binding; GO:0048437,floral organ development; GO:0048831,regulation of shoot system development; GO:0051428,peptide hormone receptor binding; GO:0080113,regulation of seed growth; GO:0090548,response to nitrate starvation; GO:1901141,regulation of lignin biosynthetic process; GO:1901333,positive regulation of lateral root development; GO:1902025,nitrate import; GO:2000023,regulation of lateral root development; GO:2000280,regulation of root development; GO:2000652,regulation of secondary cell wall biogenesis;	--	NP_199777.1 Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	128	129	84	72
AT5G49700	transcription only	1.175074148358365	-0.3147885320210269	AT5G49700	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_199781.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	34	51	26	20
AT5G51180	transcription only	3.856497802354824	-0.16106172907547203	AT5G51180	--	GO:0003674,molecular_function; GO:0044255,cellular lipid metabolic process;	--	NP_568754.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	60	110	53	49
AT5G51550	transcription only	1.2544441606814307	-0.5490006062696601	AT5G51550	--	GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0048046,apoplast;	--	NP_199968.1 EXORDIUM like 3 [Arabidopsis thaliana]	542	452	259	191
AT5G51950	transcription only	1.1839687582136302	-0.7041286926579061	AT5G51950	--	GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding;	--	NP_200008.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]	1055	852	459	318
AT5G53050	transcription only	-1.873310658140759	-0.31864780734745396	AT5G53050	--	GO:0003824,catalytic activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_001032065.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	55	52	27	29
AT5G53880	transcription only	-1.7689019358435691	0.05590269378845419	AT5G53880	--	GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_568802.1 hypothetical protein AT5G53880 [Arabidopsis thaliana]	106	69	71	49
AT5G54570	transcription only	-1.0889061575224777	-0.5001646901885413	AT5G54570	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102483,scopolin beta-glucosidase activity;	E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188;	NP_200268.3 beta glucosidase 41 [Arabidopsis thaliana]	25	24	13	10
AT5G54630	transcription only	-1.3787113489023304	-0.13508563572376636	AT5G54630	--	GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_200274.1 zinc finger protein-like protein [Arabidopsis thaliana]	56	44	39	22
AT5G54770	transcription only	-2.2141080796729975	-0.7458861187649481	AT5G54770	--	GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006974,cellular response to DNA damage stimulus; GO:0008270,zinc ion binding; GO:0009228,thiamine biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016763,pentosyltransferase activity; GO:0018131,oxazole or thiazole biosynthetic process; GO:0019438,aromatic compound biosynthetic process; GO:0019904,protein domain specific binding; GO:0042803,protein homodimerization activity; GO:0044272,sulfur compound biosynthetic process; GO:0046872,metal ion binding; GO:0052837,thiazole biosynthetic process; GO:1901362,organic cyclic compound biosynthetic process; GO:1901566,organonitrogen compound biosynthetic process;	THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]; K03146;	NP_200288.1 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) [Arabidopsis thaliana]	12932	12365	5800	4248
AT5G55450	transcription only	-1.8616953149055888	-0.4798208812059597	AT5G55450	--	GO:0005504,fatty acid binding; GO:0009627,systemic acquired resistance; GO:0051707,response to other organism;	--	NP_568824.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	15	15	12	3
AT5G56120	transcription only	1.2188423849583456	-0.9764958909868096	AT5G56120	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_200423.2 RNA polymerase II elongation factor [Arabidopsis thaliana]	86	78	24	30
AT5G56590	transcription only	1.7510806373945491	0.4650344489380174	AT5G56590	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_200470.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	69	58	66	50
AT5G56660	transcription only	1.768881714131554	0.2864690462964509	AT5G56660	--	GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0009850,auxin metabolic process; GO:0010178,IAA-amino acid conjugate hydrolase activity; GO:0010179,IAA-Ala conjugate hydrolase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_200477.1 IAA-leucine resistant (ILR)-like 2 [Arabidopsis thaliana]	12	29	29	7
AT5G56870	transcription only	1.3769248450544855	-0.30446919628972907	AT5G56870	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast;	--	NP_200498.1 beta-galactosidase 4 [Arabidopsis thaliana]	1139	1081	663	528
AT5G57250	transcription only	2.2441520197377427	-0.3072489435681446	AT5G57250	--	GO:0005515,protein binding; GO:0005739,mitochondrion;	--	BAA96948.1 salt-inducible protein-like [Arabidopsis thaliana]	23	23	10	14
AT5G58060	transcription only	1.2184150542373018	-0.5531220369955016	AT5G58060	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006906,vesicle fusion; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0031982,vesicle;	YKT6; synaptobrevin homolog YKT6; K08516;	NP_001154785.1 SNARE-like superfamily protein [Arabidopsis thaliana]	142	151	64	67
AT5G58240	transcription only	1.2544362186345253	0.49705875544673583	AT5G58240	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0043530,adenosine 5'-monophosphoramidase activity; GO:0047352,adenylylsulfate-ammonia adenylyltransferase activity; GO:0047627,adenylylsulfatase activity; GO:0047710,bis(5'-adenosyl)-triphosphatase activity;	FHIT; bis(5'-adenosyl)-triphosphatase [EC:3.6.1.29]; K01522;	NP_200632.2 FRAGILE HISTIDINE TRIAD [Arabidopsis thaliana]	44	35	49	26
AT5G58270	transcription only	-1.36946718688904	-0.01607502642763557	AT5G58270	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0006811,ion transport; GO:0006879,cellular iron ion homeostasis; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010288,response to lead ion; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0046686,response to cadmium ion; GO:0048364,root development; GO:0050790,regulation of catalytic activity; GO:0051276,chromosome organization; GO:0055072,iron ion homeostasis; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCB7; ATP-binding cassette, subfamily B (MDR/TAP), member 7; K05662;	NP_200635.1 ABC transporter of the mitochondrion 3 [Arabidopsis thaliana]	281	170	140	147
AT5G58300	transcription only	-1.1518038734663216	-0.3358346930450979	AT5G58300	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001119458.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	112	113	64	54
AT5G58640	transcription only	1.357173317969941	-0.17099148585872764	AT5G58640	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	SELENOT; thioredoxin reductase-like selenoprotein T; K22366;	NP_200672.1 Selenoprotein, Rdx type [Arabidopsis thaliana]	153	101	78	69
AT5G58650	transcription only	1.1870446669634886	0.4169809487830351	AT5G58650	--	GO:0005576,extracellular region; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0009658,chloroplast organization; GO:0042127,regulation of cell population proliferation;	--	NP_200673.1 plant peptide containing sulfated tyrosine 1 [Arabidopsis thaliana]	49	23	38	25
AT5G59010	transcription only	-1.172911258925274	-0.4666884468073416	AT5G59010	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_200709.2 kinase with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	234	186	132	72
AT5G60360	transcription only	-1.0401864824086158	-0.14689161030243214	AT5G60360	--	GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0007568,aging; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0099503,secretory vesicle;	CTSH; cathepsin H [EC:3.4.22.16]; K01366;	NP_568921.1 aleurain-like protease [Arabidopsis thaliana]	3719	3168	2324	1790
AT5G61260	transcription only	-2.0114077988920593	-0.37349556425161445	AT5G61260	--	GO:0005516,calmodulin binding; GO:0008150,biological_process;	--	NP_001318853.1 Plant calmodulin-binding protein-like protein [Arabidopsis thaliana]	29	19	12	12
AT5G61480	transcription only	-1.2521284658798886	0.19699916109614893	AT5G61480	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0010089,xylem development; GO:0010223,secondary shoot formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0051301,cell division; GO:0106310,protein serine kinase activity;	--	NP_200956.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	349	404	318	257
AT5G62680	transcription only	-1.5025108660447122	-0.554922030568508	AT5G62680	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090448,glucosinolate:proton symporter activity; GO:0090449,phloem glucosinolate loading; GO:0098656,anion transmembrane transport; GO:1901349,glucosinolate transport;	--	NP_201074.1 Major facilitator superfamily protein [Arabidopsis thaliana]	759	612	342	273
AT5G63780	transcription only	-1.1380552900635406	0.2398233749049005	AT5G63780	--	GO:0008270,zinc ion binding; GO:0010492,maintenance of shoot apical meristem identity; GO:0016020,membrane; GO:0048507,meristem development;	--	NP_001331890.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	128	94	89	82
AT5G63890	transcription only	2.7499429814133367	0.5015119013920845	AT5G63890	--	GO:0000105,histidine biosynthetic process; GO:0004399,histidinol dehydrogenase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009411,response to UV; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046872,metal ion binding; GO:0051287,NAD binding;	hisD; histidinol dehydrogenase [EC:1.1.1.23]; K00013;	NP_568981.2 histidinol dehydrogenase [Arabidopsis thaliana]	167	165	175	137
AT5G64000	transcription only	-1.756790503043215	-0.5043905682031897	AT5G64000	--	GO:0000103,sulfate assimilation; GO:0003824,catalytic activity; GO:0004441,inositol-1,4-bisphosphate 1-phosphatase activity; GO:0006790,sulfur compound metabolic process; GO:0008152,metabolic process; GO:0008441,3'(2'),5'-bisphosphate nucleotidase activity; GO:0016312,inositol bisphosphate phosphatase activity; GO:0016787,hydrolase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046872,metal ion binding;	SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57]; K15422;	NP_201205.1 Inositol monophosphatase family protein [Arabidopsis thaliana]	121	74	40	48
AT5G64030	transcription only	1.2584041291788983	-0.6166440737657519	AT5G64030	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_201208.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	910	769	425	302
AT5G64240	transcription only	-1.7851317190617038	-0.7368466436655867	AT5G64240	--	GO:0004197,cysteine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_851262.1 metacaspase 3 [Arabidopsis thaliana]	170	124	65	51
AT5G64620	transcription only	1.181754629840376	-0.40794508149615066	AT5G64620	--	GO:0004857,enzyme inhibitor activity; GO:0005773,vacuole; GO:0043086,negative regulation of catalytic activity;	--	NP_201267.1 cell wall / vacuolar inhibitor of fructosidase 2 [Arabidopsis thaliana]	280	151	100	108
AT5G64770	transcription only	-1.796221272108247	0.7606750170385498	AT5G64770	--	GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005783,endoplasmic reticulum; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0008284,positive regulation of cell population proliferation; GO:0009733,response to auxin; GO:0009786,regulation of asymmetric cell division; GO:0009958,positive gravitropism; GO:0010082,regulation of root meristem growth; GO:0022622,root system development; GO:0030154,cell differentiation; GO:0032880,regulation of protein localization; GO:0048527,lateral root development; GO:2000012,regulation of auxin polar transport; GO:2000023,regulation of lateral root development; GO:2000067,regulation of root morphogenesis; GO:2000280,regulation of root development;	--	NP_201282.1 root meristem growth factor [Arabidopsis thaliana]	10	7	11	8
AT5G64920	transcription only	-1.1857608088461975	0.9728124534299024	AT5G64920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_201297.1 COP1-interacting protein 8 [Arabidopsis thaliana]	38	38	40	56
AT5G65460	transcription only	-1.2812356033418424	0.4183328514119166	AT5G65460	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007017,microtubule-based process; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement; GO:0015630,microtubule cytoskeleton; GO:0016020,membrane; GO:0031022,nuclear migration along microfilament;	--	NP_001331384.1 kinesin like protein for actin based chloroplast movement 2 [Arabidopsis thaliana]	138	156	137	123
AT5G65990	transcription only	1.5793022824353815	-0.4153910319308858	AT5G65990	--	GO:0003333,amino acid transmembrane transport; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006865,amino acid transport; GO:0015173,aromatic amino acid transmembrane transporter activity; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015801,aromatic amino acid transport; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport;	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209;	NP_201400.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	162	175	93	75
AT5G67250	transcription only	-1.475142926668756	0.4856356086318493	AT5G67250	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_569047.1 SKP1/ASK1-interacting protein 2 [Arabidopsis thaliana]	112	122	106	109
AT5G67290	transcription only	-1.1591892404750797	-0.02310717964471544	AT5G67290	--	GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity;	--	NP_201530.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]	74	41	37	36
AT5G67310	transcription only	1.6675714458393625	0.13416434666636515	AT5G67310	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_201532.2 cytochrome P450, family 81, subfamily G, polypeptide 1 [Arabidopsis thaliana]	13	11	13	5
AT5G67360	transcription only	-1.08908435672817	-0.2121267938671768	AT5G67360	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0010214,seed coat development; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0048359,mucilage metabolic process involved in seed coat development; GO:0080001,mucilage extrusion from seed coat; GO:0099503,secretory vesicle;	--	NP_569048.1 Subtilase family protein [Arabidopsis thaliana]	3188	2919	1973	1522
AT5G67490	transcription only	-1.8977943875670205	0.04948154168365045	AT5G67490	--	GO:0005739,mitochondrion; GO:0006099,tricarboxylic acid cycle; GO:0034553,mitochondrial respiratory chain complex II assembly;	--	NP_569049.1 succinate dehydrogenase assembly factor [Arabidopsis thaliana]	686	603	447	426
AT1G01130	translation only	0.5629389009964095	-1.773887644855576	AT1G01130	--	--	--	NP_171621.2 CBL-interacting Serine/Threonine-kinase [Arabidopsis thaliana]	24	20	8	1
AT1G01750	translation only	-0.15034505049512462	-1.4314559162396254	AT1G01750	--	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0030042,actin filament depolymerization; GO:0051015,actin filament binding;	CFL; cofilin; K05765;	NP_171680.1 actin depolymerizing factor 11 [Arabidopsis thaliana]	6	13	4	1
AT1G03130	translation only	-0.0839046151033104	-1.0707848724352749	AT1G03130	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding;	psaD; photosystem I subunit II; K02692;	NP_171812.1 photosystem I subunit D-2 [Arabidopsis thaliana]	636	741	247	191
AT1G03870	translation only	-0.1603379651401728	-1.5734049638738212	AT1G03870	--	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0099503,secretory vesicle;	--	NP_563692.1 FASCICLIN-like arabinoogalactan 9 [Arabidopsis thaliana]	65	52	15	11
AT1G06260	translation only	-0.6500799469938042	-1.2930568913951457	AT1G06260	--	GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process;	--	NP_563764.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	468	511	154	113
AT1G06560	translation only	-0.3786394888486809	1.0112421501228082	AT1G06560	--	GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis;	--	NP_172143.3 NOL1/NOP2/sun family protein [Arabidopsis thaliana]	48	46	62	62
AT1G08590	translation only	-0.3618932347586372	-1.1886973779027736	AT1G08590	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0106310,protein serine kinase activity;	--	NP_172335.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	21	10	6	3
AT1G09340	translation only	-0.6316790751016567	-1.247884890178596	AT1G09340	--	GO:0000272,polysaccharide catabolic process; GO:0000325,plant-type vacuole; GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005975,carbohydrate metabolic process; GO:0005996,monosaccharide metabolic process; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010297,heteropolysaccharide binding; GO:0010319,stromule; GO:0010468,regulation of gene expression; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0042631,cellular response to water deprivation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast;	--	NP_001322308.1 chloroplast RNA binding protein [Arabidopsis thaliana]	691	648	211	163
AT1G10070	translation only	-0.00325403912410146	-1.131529463043501	AT1G10070	--	GO:0003824,catalytic activity; GO:0004084,branched-chain-amino-acid transaminase activity; GO:0005737,cytoplasm; GO:0008483,transaminase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009081,branched-chain amino acid metabolic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009097,isoleucine biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009099,valine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0050048,L-leucine:2-oxoglutarate aminotransferase activity; GO:0052654,L-leucine transaminase activity; GO:0052655,L-valine transaminase activity; GO:0052656,L-isoleucine transaminase activity; GO:0071669,plant-type cell wall organization or biogenesis;	E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42]; K00826;	NP_001031015.1 branched-chain amino acid transaminase 2 [Arabidopsis thaliana]	32	30	6	12
AT1G10395	translation only	0.3761439736174939	1.6048510665168054	AT1G10395	--	--	--	NP_001320683.1 hypothetical protein AT1G10395 [Arabidopsis thaliana]	25	20	44	45
AT1G13110	translation only	0.8008576739909383	2.780997169682863	AT1G13110	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172770.1 cytochrome P450, family 71 subfamily B, polypeptide 7 [Arabidopsis thaliana]	7	6	18	38
AT1G13140	translation only	-0.01799915338949222	-1.027720533575312	AT1G13140	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172773.4 cytochrome P450, family 86, subfamily C, polypeptide 3 [Arabidopsis thaliana]	251	235	77	79
AT1G14370	translation only	-0.04886574795260545	1.0748626988195067	AT1G14370	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030957,Tat protein binding; GO:0106310,protein serine kinase activity; GO:1900426,positive regulation of defense response to bacterium;	--	NP_172889.1 protein kinase 2A [Arabidopsis thaliana]	9	13	17	14
AT1G15040	translation only	-0.4182594497341805	-1.038166530998748	AT1G15040	--	GO:0005575,cellular_component; GO:0006541,glutamine metabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:2000032,regulation of secondary shoot formation;	--	NP_850943.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	204	203	76	56
AT1G15520	translation only	0.30912961697925195	-1.0776649648522754	AT1G15520	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010193,response to ozone; GO:0010496,intercellular transport; GO:0015562,efflux transmembrane transporter activity; GO:0015692,lead ion transport; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042631,cellular response to water deprivation; GO:0046865,terpenoid transport; GO:0048581,negative regulation of post-embryonic development; GO:0055085,transmembrane transport; GO:0080168,abscisic acid transport; GO:0090332,stomatal closure; GO:0098657,import into cell; GO:0098739,import across plasma membrane; GO:0140359,ABC-type transporter activity;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_173005.1 pleiotropic drug resistance 12 [Arabidopsis thaliana]	43	50	20	10
AT1G16000	translation only	0.8948389756041502	1.018997984939637	AT1G16000	--	GO:0009527,plastid outer membrane; GO:0016020,membrane;	--	VYS46232.1 unnamed protein product [Arabidopsis thaliana]	56	37	66	57
AT1G18710	translation only	0.6267125312313271	1.4489516923511412	AT1G18710	MYB	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0010214,seed coat development; GO:0140547,acquisition of seed longevity;	--	NP_173306.1 myb domain protein 47 [Arabidopsis thaliana]	5	4	8	8
AT1G21160	translation only	0.5788296037325851	3.899256629640041	AT1G21160	--	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process;	EIF5B; translation initiation factor 5B; K03243;	NP_173540.2 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]	37	16	296	222
AT1G22050	translation only	-0.4972289879491185	-1.55491409761166	AT1G22050	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_173624.1 membrane-anchored ubiquitin-fold protein 6 precursor [Arabidopsis thaliana]	15	12	3	3
AT1G23560	translation only	0.9615089161675388	-1.0310044502717222	AT1G23560	--	--	--	NP_001320352.1 OBP32pep, putative (DUF220) [Arabidopsis thaliana]	57	53	16	19
AT1G24030	translation only	-0.1737710318663599	-1.4256868003076033	AT1G24030	--	GO:0000166,nucleotide binding; GO:0000976,transcription cis-regulatory region binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173814.2 Protein kinase superfamily protein [Arabidopsis thaliana]	27	7	4	4
AT1G24290	translation only	0.1025152124322944	-1.381914529021525	AT1G24290	--	GO:0000731,DNA synthesis involved in DNA repair; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006261,DNA-templated DNA replication; GO:0008047,enzyme activator activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0050790,regulation of catalytic activity;	ycaJ; putative ATPase; K07478;	NP_173839.1 AAA-type ATPase family protein [Arabidopsis thaliana]	20	17	9	1
AT1G24600	translation only	-0.5919809935954766	-1.8507052843306813	AT1G24600	--	--	--	NP_564221.1 hypothetical protein AT1G24600 [Arabidopsis thaliana]	10	11	3	1
AT1G25550	translation only	0.4414648473348607	-1.642034343404085	AT1G25550	G2-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016036,cellular response to phosphate starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0071456,cellular response to hypoxia; GO:0080090,regulation of primary metabolic process;	--	NP_001323092.1 myb-like transcription factor family protein [Arabidopsis thaliana]	22	23	8	2
AT1G27640	translation only	0.01797336651658607	1.7231990994580315	AT1G27640	--	GO:0003674,molecular_function;	--	NP_174085.1 hypothetical protein AT1G27640 [Arabidopsis thaliana]	14	17	47	23
AT1G29200	translation only	0.906885208065432	-1.1383715050834866	AT1G29200	--	GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_001322313.1 O-fucosyltransferase family protein [Arabidopsis thaliana]	14	14	8	1
AT1G30800	translation only	0.3813308561970862	1.7330873344302642	AT1G30800	--	GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane;	--	NP_174366.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	6	4	8	13
AT1G32630	translation only	-0.5024255034557408	1.1815338492861769	AT1G32630	--	GO:0003674,molecular_function;	--	NP_001322452.1 FAM50A-like protein [Arabidopsis thaliana]	5	7	9	9
AT1G34110	translation only	-0.1436441521724023	1.2126748546266295	AT1G34110	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0010074,maintenance of meristem identity; GO:0010082,regulation of root meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_001320719.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	16	22	28	30
AT1G48100	translation only	0.5007613792421419	-1.32368180773485	AT1G48100	--	GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009831,plant-type cell wall modification involved in multidimensional cell growth; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0071555,cell wall organization;	--	NP_175244.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	218	182	68	39
AT1G50630	translation only	-0.01482675785933124	1.1112375882749932	AT1G50630	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_564578.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]	21	26	39	29
AT1G52618	translation only	0.36569041008217945	2.6510473808088073	AT1G52618	--	GO:0003674,molecular_function;	--	NP_001077705.1 hypothetical protein AT1G52618 [Arabidopsis thaliana]	4	1	10	10
AT1G56010	translation only	-0.11228910442568758	-1.040395770001864	AT1G56010	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009734,auxin-activated signaling pathway; GO:0048527,lateral root development;	--	NP_175997.1 NAC domain containing protein 1 [Arabidopsis thaliana]	40	21	9	10
AT1G65240	translation only	-0.8786716657395238	-1.0089969747889147	AT1G65240	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009860,pollen tube growth; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030163,protein catabolic process; GO:0090406,pollen tube;	--	NP_176703.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	50	55	15	19
AT1G68725	translation only	0.20955573580304748	-1.123152997613274	AT1G68725	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_177041.3 arabinogalactan protein 19 [Arabidopsis thaliana]	33	32	18	3
AT1G68870	translation only	-0.9028652658212366	-1.6541641295758642	AT1G68870	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009690,cytokinin metabolic process; GO:0009691,cytokinin biosynthetic process; GO:0009736,cytokinin-activated signaling pathway;	--	NP_177053.1 SOB five-like 2 [Arabidopsis thaliana]	24	19	5	4
AT1G71170	translation only	-0.4720479779982275	-1.0578643501664329	AT1G71170	--	GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding;	HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020;	NP_565013.2 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	286	230	83	79
AT1G72300	translation only	0.7177930252805482	-1.7152474417512802	AT1G72300	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004888,transmembrane signaling receptor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009826,unidimensional cell growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031347,regulation of defense response; GO:0042802,identical protein binding; GO:0045851,pH reduction; GO:0106310,protein serine kinase activity;	--	CAD5316993.1 unnamed protein product [Arabidopsis thaliana]	25	30	5	6
AT1G73880	translation only	0.4154610004102053	-1.055540327727133	AT1G73880	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_177529.2 UDP-glucosyl transferase 89B1 [Arabidopsis thaliana]	148	125	50	37
AT1G75300	translation only	-0.26900562925755633	-1.065082103681521	AT1G75300	--	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_177665.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	460	435	128	150
AT1G75960	translation only	-0.7874878605326131	-1.8573288506412335	AT1G75960	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_177724.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	48	85	15	10
AT1G76810	translation only	0.02317909899437118	-1.5621505676853098	AT1G76810	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation;	EIF5B; translation initiation factor 5B; K03243;	NP_177807.3 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]	269	337	69	67
AT1G77280	translation only	-0.4506314549875496	-1.5963359834549398	AT1G77280	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity;	--	NP_001319394.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana]	51	47	9	12
AT1G78980	translation only	-0.5274744172754527	-1.1012792731345455	AT1G78980	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_178019.2 STRUBBELIG-receptor family 5 [Arabidopsis thaliana]	5	15	7	0
AT1G80320	translation only	-0.07237444342377339	-2.312631422505069	AT1G80320	--	GO:0051213,dioxygenase activity;	--	NP_178148.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	35	14	1	5
AT1G80840	translation only	-0.3756412411165262	-1.7306379621952448	AT1G80840	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009611,response to wounding; GO:0009751,response to salicylic acid; GO:0031347,regulation of defense response; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0050832,defense response to fungus;	--	NP_178199.1 WRKY DNA-binding protein 40 [Arabidopsis thaliana]	18	10	0	5
AT2G01860	translation only	-0.6103581367004604	1.140279733374839	AT2G01860	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_178295.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	12	10	23	10
AT2G02500	translation only	-0.08307641380335153	-1.597519370639502	AT2G02500	--	GO:0003824,catalytic activity; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0050518,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; GO:0070567,cytidylyltransferase activity;	ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]; K00991;	NP_001325418.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	66	49	14	11
AT2G04030	translation only	0.518142621150611	1.0282486001367468	AT2G04030	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009704,de-etiolation; GO:0009941,chloroplast envelope; GO:0010157,response to chlorate; GO:0015031,protein transport; GO:0016887,ATP hydrolysis activity; GO:0042803,protein homodimerization activity; GO:0045037,protein import into chloroplast stroma; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone;	HSP90B, TRA1; heat shock protein 90kDa beta; K09487;	NP_178487.1 Chaperone protein htpG family protein [Arabidopsis thaliana]	1797	1654	2745	1945
AT2G04380	translation only	0.3222749859436793	1.9074457464490595	AT2G04380	--	GO:0008150,biological_process;	--	NP_178519.1 hypothetical protein AT2G04380 [Arabidopsis thaliana]	73	44	184	108
AT2G16910	translation only	0.4298436583919804	-1.056689735698413	AT2G16910	bHLH	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0043565,sequence-specific DNA binding; GO:0046983,protein dimerization activity; GO:0048658,anther wall tapetum development;	--	NP_179283.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	488	462	165	137
AT2G19330	translation only	0.02750315853359619	1.0446694593785917	AT2G19330	--	GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_179523.1 plant intracellular ras group-related LRR 6 [Arabidopsis thaliana]	6	4	10	4
AT2G21180	translation only	0.3557709180073429	-1.053649918871714	AT2G21180	--	GO:0016020,membrane;	--	NP_565499.1 transmembrane protein [Arabidopsis thaliana]	96	70	26	26
AT2G23670	translation only	-0.5465711153258874	-1.0008881909684266	AT2G23670	--	GO:0003674,molecular_function; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid;	--	NP_565556.1 homolog of Synechocystis YCF37 [Arabidopsis thaliana]	262	253	103	69
AT2G24230	translation only	-0.9934645228236468	-1.085684319319103	AT2G24230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_850049.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	117	87	34	29
AT2G24970	translation only	-0.08131786765008246	1.09518131810082	AT2G24970	--	GO:0000278,mitotic cell cycle; GO:0000940,outer kinetochore; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005876,spindle microtubule; GO:0007059,chromosome segregation; GO:0008017,microtubule binding; GO:0051301,cell division;	--	NP_565581.1 spindle/kinetochore-associated protein [Arabidopsis thaliana]	5	5	7	7
AT2G25280	translation only	0.692749075882493	-1.0650387188014143	AT2G25280	--	--	--	NP_565590.1 AmmeMemoRadiSam system protein B [Arabidopsis thaliana]	187	145	78	30
AT2G27330	translation only	-0.2091753941933214	1.336613450228374	AT2G27330	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0008150,biological_process;	--	NP_565646.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	10	2	9	10
AT2G28440	translation only	-0.05928355087066585	-1.1591557925718678	AT2G28440	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_180411.1 proline-rich family protein [Arabidopsis thaliana]	16	8	4	3
AT2G29540	translation only	-0.36233340411914033	1.0868449844649593	AT2G29540	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005515,protein binding; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0046983,protein dimerization activity;	RPC19, POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2; K03020;	NP_001031443.1 RNApolymerase 14 kDa subunit [Arabidopsis thaliana]	10	21	27	18
AT2G32890	translation only	-0.0057355576880199	-1.11951149788046	AT2G32890	--	GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0007267,cell-cell signaling; GO:0019722,calcium-mediated signaling; GO:0048046,apoplast;	--	NP_180848.1 RALF-like 17 [Arabidopsis thaliana]	43	61	23	10
AT2G33060	translation only	0.02031850746731843	1.0433143842263652	AT2G33060	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_180865.2 receptor like protein 27 [Arabidopsis thaliana]	12	12	9	22
AT2G33320	translation only	-0.5319696352037603	-1.1846121934881242	AT2G33320	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006952,defense response;	--	NP_180890.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	53	45	13	15
AT2G36790	translation only	-0.3267925924464566	1.826681874600901	AT2G36790	--	GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity;	UGT73C6; flavonol-3-O-L-rhamnoside-7-O-glucosyltransferase [EC:2.4.1.-]; K22771;	NP_181217.1 UDP-glucosyl transferase 73C6 [Arabidopsis thaliana]	11	12	19	33
AT2G36970	translation only	0.4805163808564617	-1.0229145945608105	AT2G36970	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_181234.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	39	36	11	13
AT2G37480	translation only	0.14942325977382143	1.5069097235722215	AT2G37480	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_850283.1 hypothetical protein AT2G37480 [Arabidopsis thaliana]	56	68	136	100
AT2G40640	translation only	0.22597934786558535	1.1070663181369682	AT2G40640	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_850332.1 RING/U-box superfamily protein [Arabidopsis thaliana]	30	8	32	21
AT2G41750	translation only	-0.3840046968899238	-1.1218524914149526	AT2G41750	--	GO:0008033,tRNA processing; GO:0016432,tRNA-uridine aminocarboxypropyltransferase activity; GO:0016740,transferase activity;	yfiP; DTW domain-containing protein; K05812;	NP_181706.2 DTW domain-containing protein [Arabidopsis thaliana]	12	7	5	1
AT2G41760	translation only	0.696460914758023	1.9236163480408677	AT2G41760	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response; GO:0008418,protein-N-terminal asparagine amidohydrolase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0042742,defense response to bacterium; GO:0070773,protein-N-terminal glutamine amidohydrolase activity; GO:1901183,positive regulation of camalexin biosynthetic process;	NTAQ1; protein N-terminal glutamine amidohydrolase [EC:3.5.1.122]; K21286;	NP_565959.1 amino-terminal glutamine amidohydrolase [Arabidopsis thaliana]	5	8	18	15
AT2G42270	translation only	0.47470156675724046	-1.391589600743725	AT2G42270	--	GO:0000166,nucleotide binding; GO:0000388,spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]; K12854;	NP_181756.1 U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]	26	29	8	6
AT2G42940	translation only	-0.5381307203462943	-2.395121473864044	AT2G42940	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010208,pollen wall assembly; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010529,negative regulation of transposition; GO:0031490,chromatin DNA binding; GO:0035067,negative regulation of histone acetylation; GO:1900111,positive regulation of histone H3-K9 dimethylation;	--	NP_181822.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	49	55	6	7
AT2G43350	translation only	0.08514407429206594	-1.0504784178074422	AT2G43350	--	GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0016491,oxidoreductase activity; GO:0042542,response to hydrogen peroxide; GO:0042631,cellular response to water deprivation; GO:0098869,cellular oxidant detoxification; GO:0110165,cellular anatomical entity;	gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9]; K00432;	NP_001189742.1 glutathione peroxidase 3 [Arabidopsis thaliana]	33	27	10	9
AT2G43540	translation only	-0.8888696527083182	1.8366566028132296	AT2G43540	--	GO:0016020,membrane;	--	NP_566001.1 transmembrane protein [Arabidopsis thaliana]	11	5	25	13
AT2G43640	translation only	0.3808001460171101	1.0760320180348248	AT2G43640	--	GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0030942,endoplasmic reticulum signal peptide binding; GO:0045047,protein targeting to ER; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP14; signal recognition particle subunit SRP14; K03104;	NP_001189744.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]	29	34	57	33
AT2G46200	translation only	-0.28773097526423347	1.347417702602416	AT2G46200	--	GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:1990904,ribonucleoprotein complex;	--	NP_850448.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]	25	13	25	36
AT2G46910	translation only	-0.9357656837648444	-1.280908377029869	AT2G46910	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule;	--	NP_566091.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]	134	152	47	32
AT2G47000	translation only	-0.34319037077244635	1.3226919800655943	AT2G47000	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0009630,gravitropism; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009735,response to cytokinin; GO:0009926,auxin polar transport; GO:0010315,auxin export across the plasma membrane; GO:0010328,auxin influx transmembrane transporter activity; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010540,basipetal auxin transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0060919,auxin import into cell; GO:0140359,ABC-type transporter activity;	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658;	NP_001323911.1 ATP binding cassette subfamily B4 [Arabidopsis thaliana]	23	3	22	19
AT2G47780	translation only	0.758134520814643	2.0034067002069573	AT2G47780	--	GO:0005811,lipid droplet; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation;	--	NP_182299.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana]	5	7	12	19
AT3G01430	translation only	0.7616336550291816	-1.283292548855654	AT3G01430	--	--	--	NP_186792.1 NHL domain protein [Arabidopsis thaliana]	24	8	8	1
AT3G04690	translation only	-0.4433531123629965	-1.8663175055662111	AT3G04690	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation; GO:0090404,pollen tube tip; GO:0106310,protein serine kinase activity;	--	NP_187120.1 Malectin/receptor-like protein kinase family protein [Arabidopsis thaliana]	16	18	2	4
AT3G05800	translation only	-0.3365245675398342	1.109015241463749	AT3G05800	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity;	--	NP_566260.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 [Arabidopsis thaliana]	44	46	67	61
AT3G06830	translation only	-0.5206810765842771	-1.1021267132849348	AT3G06830	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; GO:0090406,pollen tube;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_187339.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	32	45	13	11
AT3G09550	translation only	0.37065070802436473	-1.7622667976424722	AT3G09550	--	GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001319511.1 Ankyrin repeat family protein [Arabidopsis thaliana]	37	45	8	8
AT3G10040	translation only	-0.9813993969587576	-1.3500379476280358	AT3G10040	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010629,negative regulation of gene expression; GO:0071456,cellular response to hypoxia; GO:1900037,regulation of cellular response to hypoxia;	--	NP_187615.2 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	37	21	15	1
AT3G11570	translation only	-0.5892501576290986	-2.147269842836203	AT3G11570	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	--	NP_187764.1 TRICHOME BIREFRINGENCE-LIKE 8 [Arabidopsis thaliana]	15	17	4	1
AT3G13000	translation only	0.5945975982410986	1.0186936939160949	AT3G13000	--	GO:0000325,plant-type vacuole; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_001327605.1 ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]	46	17	44	38
AT3G14210	translation only	-0.9296959391404972	2.074657724772688	AT3G14210	--	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009625,response to insect; GO:0009941,chloroplast envelope; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_188037.1 GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]	536	601	1877	1333
AT3G15352	translation only	-0.5322606266399025	1.075540138496692	AT3G15352	--	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005758,mitochondrial intermembrane space; GO:0009617,response to bacterium; GO:0016020,membrane; GO:0016531,copper chaperone activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding;	COX17; cytochrome c oxidase assembly protein subunit 17; K02260;	NP_566508.1 cytochrome c oxidase 17 [Arabidopsis thaliana]	16	1	20	4
AT3G16400	translation only	-0.7788756082464202	-1.228874799161474	AT3G16400	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0030246,carbohydrate binding; GO:0050790,regulation of catalytic activity; GO:0080027,response to herbivore; GO:0080028,nitrile biosynthetic process;	--	NP_001030709.1 nitrile specifier protein 1 [Arabidopsis thaliana]	29	33	6	11
AT3G16460	translation only	0.35400401935868053	-2.5536278534236327	AT3G16460	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding;	--	NP_188267.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	23	30	3	3
AT3G21180	translation only	-0.06404882487273517	-1.0360241570944304	AT3G21180	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009555,pollen development; GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_188755.2 autoinhibited Ca(2+)-ATPase 9 [Arabidopsis thaliana]	140	123	60	27
AT3G22680	translation only	0.560343271012917	1.494903025344886	AT3G22680	--	GO:0000419,RNA polymerase V complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006306,DNA methylation; GO:0043621,protein self-association; GO:0044030,regulation of DNA methylation; GO:0070918,small regulatory ncRNA processing;	--	NP_188907.2 RNA-DIRECTED DNA METHYLATION 1 [Arabidopsis thaliana]	66	28	73	94
AT3G26210	translation only	-0.29047794514994946	-2.0980762473749746	AT3G26210	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_189252.1 cytochrome P450, family 71, subfamily B, polypeptide 23 [Arabidopsis thaliana]	19	17	6	0
AT3G26730	translation only	0.7464088794854442	1.5703084534051723	AT3G26730	--	GO:0000976,transcription cis-regulatory region binding; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_189307.2 RING/U-box superfamily protein [Arabidopsis thaliana]	152	151	299	291
AT3G27770	translation only	0.6399412777262935	-1.181246314224785	AT3G27770	--	GO:0016020,membrane;	--	NP_566825.1 plant/protein [Arabidopsis thaliana]	49	56	18	13
AT3G47470	translation only	-0.7152218386282697	-1.047834675874014	AT3G47470	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4; K08910;	NP_190331.3 light-harvesting chlorophyll-protein complex I subunit A4 [Arabidopsis thaliana]	6551	6196	2122	1931
AT3G50430	translation only	0.8023369820252353	-1.717636010599028	AT3G50430	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190612.3 golgin [Arabidopsis thaliana]	20	20	4	4
AT3G51070	translation only	0.23279286141463396	-1.083425406399402	AT3G51070	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_190676.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	197	157	78	35
AT3G53510	translation only	-0.5688130611771535	-1.0342051291696488	AT3G53510	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1903825,organic acid transmembrane transport;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_190919.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	145	78	29	40
AT3G57190	translation only	0.2625841235303856	-1.5408699855875645	AT3G57190	--	GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0003747,translation release factor activity; GO:0005515,protein binding; GO:0006415,translational termination; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0043488,regulation of mRNA stability; GO:0043565,sequence-specific DNA binding;	--	NP_191278.2 peptide chain release factor [Arabidopsis thaliana]	24	10	7	1
AT3G59030	translation only	-0.14657735890393428	-1.2350864696893464	AT3G59030	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0009813,flavonoid biosynthetic process; GO:0010023,proanthocyanidin biosynthetic process; GO:0010231,maintenance of seed dormancy; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_191462.1 MATE efflux family protein [Arabidopsis thaliana]	20	13	4	5
AT3G59410	translation only	0.6944912203167259	-1.3243383341456485	AT3G59410	--	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004694,eukaryotic translation initiation factor 2alpha kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006417,regulation of translation; GO:0006468,protein phosphorylation; GO:0006521,regulation of cellular amino acid metabolic process; GO:0009635,response to herbicide; GO:0010998,regulation of translational initiation by eIF2 alpha phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0034198,cellular response to amino acid starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0070301,cellular response to hydrogen peroxide; GO:0072755,cellular response to benomyl; GO:0080090,regulation of primary metabolic process; GO:0106310,protein serine kinase activity; GO:1990451,cellular stress response to acidic pH;	EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1]; K16196;	NP_001326041.1 protein kinase family protein [Arabidopsis thaliana]	61	48	18	11
AT3G61160	translation only	0.13810072742202056	1.195742516577019	AT3G61160	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity;	--	NP_001326846.1 Protein kinase superfamily protein [Arabidopsis thaliana]	4	11	11	12
AT3G61630	translation only	-0.10850982084467448	2.9209945020890373	AT3G61630	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development; GO:0048825,cotyledon development;	--	NP_191722.1 cytokinin response factor 6 [Arabidopsis thaliana]	29	20	156	92
AT3G62420	translation only	0.6029903840337608	1.672204532361801	AT3G62420	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006971,hypotonic response; GO:0009267,cellular response to starvation; GO:0043565,sequence-specific DNA binding; GO:0045735,nutrient reservoir activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; GO:2000693,positive regulation of seed maturation;	--	NP_191801.1 basic region/leucine zipper motif 53 [Arabidopsis thaliana]	10	9	12	26
AT3G63140	translation only	-0.5710857134191537	-1.272433527783988	AT3G63140	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast;	--	NP_191873.1 chloroplast stem-loop binding protein of 41 kDa [Arabidopsis thaliana]	711	596	210	149
AT3G63210	translation only	-0.702869386785295	1.2547230111521328	AT3G63210	--	GO:0000932,P-body; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0010162,seed dormancy process; GO:0010494,cytoplasmic stress granule; GO:0019900,kinase binding; GO:0046872,metal ion binding; GO:1905582,response to mannose;	--	NP_567143.1 mediator of aba-regulated dormancy protein (DUF581) [Arabidopsis thaliana]	19	28	46	30
AT4G00390	translation only	0.293063573643557	-1.074549162847258	AT4G00390	GeBP	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription;	--	NP_191949.1 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]	26	10	6	5
AT4G01670	translation only	0.4010595601273112	1.1699713603215602	AT4G01670	--	--	--	NP_192076.2 hypothetical protein AT4G01670 [Arabidopsis thaliana]	8	4	12	6
AT4G01790	translation only	-0.01415598093471282	1.5113331983446068	AT4G01790	--	GO:0003674,molecular_function; GO:0005840,ribosome; GO:0008150,biological_process;	--	NP_192088.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	9	4	8	15
AT4G02520	translation only	-0.16069052997870492	-1.1434444115016502	AT4G02520	--	GO:0000325,plant-type vacuole; GO:0002239,response to oomycetes; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009734,auxin-activated signaling pathway; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019904,protein domain specific binding; GO:0042221,response to chemical; GO:0043231,intracellular membrane-bounded organelle; GO:0043295,glutathione binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding; GO:2001147,camalexin binding; GO:2001227,quercitrin binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_192161.1 glutathione S-transferase PHI 2 [Arabidopsis thaliana]	50	54	27	6
AT4G03260	translation only	0.3302475895565761	1.6277260178658122	AT4G03260	--	GO:0000226,microtubule cytoskeleton organization; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008017,microtubule binding; GO:0009819,drought recovery; GO:0019901,protein kinase binding; GO:0045926,negative regulation of growth; GO:0046777,protein autophosphorylation;	--	NP_001118925.1 Outer arm dynein light chain 1 protein [Arabidopsis thaliana]	34	24	77	43
AT4G09650	translation only	-0.7072566338206722	-1.034003713141662	AT4G09650	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport;	ATPF1D, atpH; F-type H+-transporting ATPase subunit delta; K02113;	NP_192703.1 F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana]	938	894	325	267
AT4G10100	translation only	0.7953830791332578	1.01953088167919	AT4G10100	--	GO:0000166,nucleotide binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0009734,auxin-activated signaling pathway; GO:0018315,molybdenum incorporation into molybdenum-molybdopterin complex; GO:0019008,molybdopterin synthase complex; GO:0030366,molybdopterin synthase activity;	MOCS2A, CNXG; molybdopterin synthase sulfur carrier subunit; K21232;	NP_001078366.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7 [Arabidopsis thaliana]	16	16	29	15
AT4G12080	translation only	0.28914877823138574	2.216253703948991	AT4G12080	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0043565,sequence-specific DNA binding; GO:0098687,chromosomal region;	--	NP_192945.2 AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana]	12	8	39	23
AT4G14700	translation only	0.2084778241831567	-1.905449701626212	AT4G14700	--	GO:0000166,nucleotide binding; GO:0000808,origin recognition complex; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003688,DNA replication origin binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005664,nuclear origin of replication recognition complex; GO:0006260,DNA replication; GO:0006270,DNA replication initiation; GO:0006355,regulation of DNA-templated transcription; GO:0010385,double-stranded methylated DNA binding; GO:0016887,ATP hydrolysis activity; GO:0033314,mitotic DNA replication checkpoint signaling; GO:0046872,metal ion binding;	ORC1; origin recognition complex subunit 1; K02603;	NP_567440.1 origin recognition complex 1 [Arabidopsis thaliana]	33	17	7	2
AT4G18205	translation only	-0.624768336367179	1.2382158470009317	AT4G18205	--	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport;	--	NP_001031664.1 Nucleotide-sugar transporter family protein [Arabidopsis thaliana]	5	6	3	13
AT4G19000	translation only	-0.03399014343171932	3.518802204567504	AT4G19000	--	GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0006414,translational elongation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032784,regulation of DNA-templated transcription elongation;	--	NP_001319989.1 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]	2	1	10	12
AT4G20325	translation only	0.5190641694770071	-2.0257666922861515	AT4G20325	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006401,RNA catabolic process; GO:0032299,ribonuclease H2 complex;	RNASEH2B; ribonuclease H2 subunit B; K10744;	NP_001078412.2 ribonuclease H2 subunit B [Arabidopsis thaliana]	16	19	5	1
AT4G20420	translation only	-0.3806022967703898	-1.4061500422445083	AT4G20420	--	GO:0008150,biological_process;	--	NP_193775.1 Tapetum specific protein TAP35/TAP44 [Arabidopsis thaliana]	246	200	62	49
AT4G21190	translation only	0.3526751960133512	1.609066745864275	AT4G21190	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_567622.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	18	15	45	23
AT4G21310	translation only	0.48809917115464074	-1.325564636110507	AT4G21310	--	GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008150,biological_process; GO:0009855,determination of bilateral symmetry; GO:0016020,membrane; GO:0048366,leaf development;	--	NP_193862.1 transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]	39	25	5	11
AT4G26090	translation only	-0.08715809912747527	-1.129784150761354	AT4G26090	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0016020,membrane; GO:0016045,detection of bacterium; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0098542,defense response to other organism;	RPS2; disease resistance protein RPS2; K13459;	NP_194339.1 NB-ARC domain-containing disease resistance protein [Arabidopsis thaliana]	20	16	7	4
AT4G27860	translation only	-0.3201038627969383	1.3807263624289257	AT4G27860	--	GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006880,intracellular sequestering of iron ion; GO:0010168,ER body; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0071421,manganese ion transmembrane transport;	--	NP_001190855.1 vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]	20	19	31	35
AT4G29580	translation only	-0.03273650600614617	2.7807010833763885	AT4G29580	--	GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005829,cytosol; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process;	--	NP_001154274.1 Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]	5	2	16	15
AT4G30370	translation only	0.8839682833172814	1.342503259828029	AT4G30370	--	GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_194766.1 RING/U-box superfamily protein [Arabidopsis thaliana]	6	3	9	6
AT4G30850	translation only	-0.2183175414172412	-1.292758593355529	AT4G30850	--	GO:0009725,response to hormone; GO:0009744,response to sucrose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0038023,signaling receptor activity;	--	NP_194814.2 heptahelical transmembrane protein2 [Arabidopsis thaliana]	104	94	21	31
AT4G31020	translation only	-0.1229275590818041	-1.3008220736680272	AT4G31020	--	GO:0008150,biological_process; GO:0008474,palmitoyl-(protein) hydrolase activity; GO:0098734,macromolecule depalmitoylation;	--	NP_194831.3 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	9	10	2	3
AT4G33100	translation only	0.03028434406196991	1.5720970590564736	AT4G33100	--	GO:0005634,nucleus; GO:0005758,mitochondrial intermembrane space; GO:0008150,biological_process; GO:0045332,phospholipid translocation; GO:0120009,intermembrane lipid transfer; GO:1990050,phosphatidic acid transfer activity;	--	NP_195036.1 protein phosphatase [Arabidopsis thaliana]	10	5	6	21
AT4G33355	translation only	-0.4116031506798325	-1.8785337878241353	AT4G33355	--	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding;	--	NP_680758.3 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	315	304	58	53
AT4G35420	translation only	0.9623998612505944	-1.4226444924744828	AT4G35420	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009555,pollen development; GO:0010584,pollen exine formation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0048316,seed development; GO:0080110,sporopollenin biosynthetic process;	--	NP_195268.2 dihydroflavonol 4-reductase-like1 [Arabidopsis thaliana]	199	221	62	43
AT4G36770	translation only	-0.8613800357247935	-1.2212296575260837	AT4G36770	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_195395.4 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	36	29	14	5
AT4G37050	translation only	-0.1663533023523084	-1.2180863446720571	AT4G37050	--	GO:0004620,phospholipase activity; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009737,response to abscisic acid; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0047372,acylglycerol lipase activity;	--	NP_195422.3 PATATIN-like protein 4 [Arabidopsis thaliana]	10	13	6	1
AT4G37560	translation only	-0.22389500746282393	-1.7409758251205791	AT4G37560	--	GO:0005829,cytosol; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	E3.5.1.49; formamidase [EC:3.5.1.49]; K01455;	NP_568029.1 Acetamidase/Formamidase family protein [Arabidopsis thaliana]	20	25	5	4
AT4G38540	translation only	-0.10841928227190654	1.3247388387999015	AT4G38540	--	GO:0002239,response to oomycetes; GO:0004497,monooxygenase activity; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity; GO:0071949,FAD binding;	--	NP_195566.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	2	10	8	12
AT4G39030	translation only	0.00559659563723979	-1.1092614353423729	AT4G39030	--	GO:0002376,immune system process; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0009697,salicylic acid biosynthetic process; GO:0009751,response to salicylic acid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031348,negative regulation of defense response; GO:0031969,chloroplast membrane; GO:0042742,defense response to bacterium; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0045087,innate immune response; GO:0055085,transmembrane transport;	--	NP_195614.2 MATE efflux family protein [Arabidopsis thaliana]	54	58	22	13
AT4G39270	translation only	-0.4997782660297459	-1.4610782888006622	AT4G39270	--	GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_001329133.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	11	9	4	1
AT5G03330	translation only	0.28402711884994003	-1.1850035911119916	AT5G03330	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001331866.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	38	44	19	6
AT5G05590	translation only	-0.4050897048159787	-1.5820271019987648	AT5G05590	--	GO:0000162,tryptophan biosynthetic process; GO:0004640,phosphoribosylanthranilate isomerase activity; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016853,isomerase activity;	trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]; K01817;	NP_196178.2 phosphoribosylanthranilate isomerase 2 [Arabidopsis thaliana]	8	14	3	2
AT5G05990	translation only	0.8668218671328802	1.0390109562445922	AT5G05990	--	GO:0003674,molecular_function; GO:0005759,mitochondrial matrix; GO:0008150,biological_process;	--	NP_196218.1 Mitochondrial glycoprotein family protein [Arabidopsis thaliana]	25	18	32	26
AT5G06930	translation only	-0.9168658475690148	-2.130821873324648	AT5G06930	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005643,nuclear pore;	--	NP_001318495.1 nucleolar-like protein [Arabidopsis thaliana]	23	24	3	4
AT5G08270	translation only	-0.3247633380511643	-1.169475391308517	AT5G08270	--	--	--	NP_196444.1 C5orf35 [Arabidopsis thaliana]	23	26	11	4
AT5G08340	translation only	0.5431078044556281	-1.5248147318709275	AT5G08340	--	GO:0000166,nucleotide binding; GO:0003919,FMN adenylyltransferase activity; GO:0005524,ATP binding; GO:0006747,FAD biosynthetic process; GO:0009231,riboflavin biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity;	RIBF; FAD synthetase [EC:2.7.7.2]; K22949;	NP_568192.2 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]	22	18	10	0
AT5G08400	translation only	-0.6371265801096806	1.3684128188841	AT5G08400	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001031856.1 structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]	35	47	81	61
AT5G10720	translation only	0.04941117236421119	-1.477096078792661	AT5G10720	--	GO:0000155,phosphorelay sensor kinase activity; GO:0000160,phosphorelay signal transduction system; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004673,protein histidine kinase activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007165,signal transduction; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0009927,histidine phosphotransfer kinase activity; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0018106,peptidyl-histidine phosphorylation; GO:0042221,response to chemical; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0048856,anatomical structure development; GO:0070301,cellular response to hydrogen peroxide; GO:0071219,cellular response to molecule of bacterial origin; GO:0071732,cellular response to nitric oxide; GO:0090333,regulation of stomatal closure;	--	NP_196633.2 histidine kinase 5 [Arabidopsis thaliana]	17	6	1	4
AT5G10930	translation only	-0.0695587784443657	1.3271491775293165	AT5G10930	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050896,response to stimulus; GO:0051592,response to calcium ion; GO:0106310,protein serine kinase activity;	--	NP_568241.2 CBL-interacting protein kinase 5 [Arabidopsis thaliana]	15	8	28	11
AT5G13670	translation only	-0.16630987327778066	-1.2795353303979065	AT5G13670	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_196871.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	19	18	5	5
AT5G15760	translation only	0.3699686757932223	1.0570769627213183	AT5G15760	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:1990904,ribonucleoprotein complex;	--	NP_197080.1 Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]	13	6	16	10
AT5G16340	translation only	-0.22317328021840768	-1.0842838646742436	AT5G16340	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_197138.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	49	70	17	20
AT5G18100	translation only	0.5384535296763242	1.1411734735400805	AT5G18100	--	GO:0000325,plant-type vacuole; GO:0004784,superoxide dismutase activity; GO:0005507,copper ion binding; GO:0005777,peroxisome; GO:0006801,superoxide metabolic process; GO:0006979,response to oxidative stress; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0019430,removal of superoxide radicals; GO:0046872,metal ion binding; GO:0071457,cellular response to ozone; GO:0071472,cellular response to salt stress; GO:0071484,cellular response to light intensity; GO:0071486,cellular response to high light intensity; GO:0071493,cellular response to UV-B; GO:0098869,cellular oxidant detoxification;	SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]; K04565;	NP_197311.1 copper/zinc superoxide dismutase 3 [Arabidopsis thaliana]	77	70	117	97
AT5G18748	translation only	-0.05836015877081043	2.6112050532731836	AT5G18748	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001119250.1 hypothetical protein AT5G18748 [Arabidopsis thaliana]	12	5	30	36
AT5G19340	translation only	0.02557022821773498	1.1455246372225374	AT5G19340	--	GO:0005515,protein binding;	--	NP_197435.2 hypothetical protein AT5G19340 [Arabidopsis thaliana]	32	36	50	49
AT5G20110	translation only	0.8944082919559412	1.7398748890867566	AT5G20110	--	GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005868,cytoplasmic dynein complex; GO:0005874,microtubule; GO:0007017,microtubule-based process; GO:0030286,dynein complex; GO:0045505,dynein intermediate chain binding; GO:0110165,cellular anatomical entity;	DYNLL; dynein light chain LC8-type; K10418;	NP_197511.1 Dynein light chain type 1 family protein [Arabidopsis thaliana]	6	11	10	26
AT5G23070	translation only	0.879904376895475	1.1071226889162535	AT5G23070	--	GO:0000166,nucleotide binding; GO:0004797,thymidine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009157,deoxyribonucleoside monophosphate biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046104,thymidine metabolic process; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:0090351,seedling development;	tdk, TK; thymidine kinase [EC:2.7.1.21]; K00857;	NP_568426.1 Thymidine kinase [Arabidopsis thaliana]	36	29	55	38
AT5G24460	translation only	0.4483445740532223	1.6361979323008995	AT5G24460	--	--	--	NP_197834.1 RING-H2 zinc finger protein [Arabidopsis thaliana]	11	15	35	20
AT5G24680	translation only	-0.137280404359052	1.0792126389410164	AT5G24680	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0010468,regulation of gene expression;	--	NP_197856.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Arabidopsis thaliana]	11	4	9	11
AT5G25530	translation only	0.08546021861502968	-1.6593270043116652	AT5G25530	--	GO:0005829,cytosol; GO:0006457,protein folding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding;	--	NP_001332583.1 DNAJ heat shock family protein [Arabidopsis thaliana]	10	10	1	3
AT5G26700	translation only	0.7477769138792804	-1.428940534123371	AT5G26700	--	GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development;	--	NP_850875.1 RmlC-like cupins superfamily protein [Arabidopsis thaliana]	25	18	9	2
AT5G27120	translation only	0.6217676109522383	1.0063477079475605	AT5G27120	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	NOP58; nucleolar protein 58; K14565;	NP_198064.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	333	355	528	394
AT5G27430	translation only	0.5110281756793591	-1.2333396398917005	AT5G27430	--	GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER;	SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948;	NP_198095.1 Signal peptidase subunit [Arabidopsis thaliana]	47	68	25	9
AT5G41860	translation only	-0.4760358099187132	1.0934747641334734	AT5G41860	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_199001.1 transmembrane protein [Arabidopsis thaliana]	66	50	81	80
AT5G42750	translation only	-0.4616760307902295	1.3092987955464157	AT5G42750	--	GO:0004860,protein kinase inhibitor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010423,negative regulation of brassinosteroid biosynthetic process; GO:0016020,membrane; GO:0019210,kinase inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046982,protein heterodimerization activity;	BKI1; BRI1 kinase inhibitor 1; K14499;	NP_568610.1 BRI1 kinase inhibitor 1 [Arabidopsis thaliana]	11	3	11	11
AT5G43950	translation only	0.6474675780912235	1.0839808770870327	AT5G43950	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_199208.1 vacuolar protein sorting-associated protein (DUF946) [Arabidopsis thaliana]	12	7	13	13
AT5G49560	translation only	0.33022003907372915	1.8725905200888824	AT5G49560	--	GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_199767.1 Putative methyltransferase family protein [Arabidopsis thaliana]	11	0	13	12
AT5G51670	translation only	0.01916783927614603	-1.2443957225622502	AT5G51670	--	GO:0045927,positive regulation of growth;	--	NP_001318781.1 hypothetical protein (DUF668) [Arabidopsis thaliana]	52	27	14	8
AT5G53810	translation only	0.21808875171582456	-1.07717590267186	AT5G53810	--	GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0032259,methylation; GO:0046983,protein dimerization activity;	--	NP_200192.1 O-methyltransferase family protein [Arabidopsis thaliana]	13	16	4	5
AT5G54090	translation only	-0.4928307120220326	1.4209930993293365	AT5G54090	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0004519,endonuclease activity; GO:0005524,ATP binding; GO:0006298,mismatch repair; GO:0016887,ATP hydrolysis activity; GO:0030983,mismatched DNA binding; GO:0045910,negative regulation of DNA recombination; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0140664,ATP-dependent DNA damage sensor activity;	--	NP_200220.2 DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana]	12	11	24	17
AT5G54300	translation only	0.23430590159125292	1.2532551099211349	AT5G54300	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_200241.1 cotton fiber-like protein (DUF761) [Arabidopsis thaliana]	23	25	62	18
AT5G55490	translation only	-0.6639222002703825	-1.5283775505676946	AT5G55490	--	GO:0005886,plasma membrane; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0042802,identical protein binding;	--	NP_001330005.1 gamete expressed protein 1 [Arabidopsis thaliana]	8	17	4	2
AT5G57780	translation only	0.00966191422170563	2.674095341015346	AT5G57780	--	GO:0006355,regulation of DNA-templated transcription;	--	NP_200586.1 transcription factor [Arabidopsis thaliana]	3	5	18	16
AT5G58310	translation only	-0.40926410692294096	-1.382989894259853	AT5G58310	--	GO:0005575,cellular_component; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_200639.1 methyl esterase 18 [Arabidopsis thaliana]	110	70	36	11
AT5G58840	translation only	-0.062599113504477	-3.2754574696771956	AT5G58840	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_568890.2 Subtilase family protein [Arabidopsis thaliana]	32	27	2	2
AT5G62770	translation only	0.3745960271346928	1.1987836926861426	AT5G62770	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_201083.1 membrane-associated kinase regulator, putative (DUF1645) [Arabidopsis thaliana]	25	22	33	37
AT5G64410	translation only	-0.4115175318271056	-1.0387359365662283	AT5G64410	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_201246.1 oligopeptide transporter 4 [Arabidopsis thaliana]	199	153	70	44