| ID | status | mRNA_log2FC | RPF_log2FC | Name | TF | GO | KEGG | Nr | wt_1 | wt_2 | h3_1 | h3_2 |
| AT1G07260 | homodirectional | -1.8236245481263984 | -1.5923560628481055 | AT1G07260 | -- | GO:0004134,4-alpha-glucanotransferase activity; GO:0008194,UDP-glycosyltransferase activity; GO:0010113,negative regulation of systemic acquired resistance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; | -- | NP_172206.1 UDP-glucosyl transferase 71C3 [Arabidopsis thaliana] | 20 | 9 | 2 | 4 |
| AT1G19780 | homodirectional | 1.179083180515525 | 1.2915980492979413 | AT1G19780 | -- | GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; | CNGC; cyclic nucleotide gated channel, plant; K05391; | NP_173408.2 cyclic nucleotide gated channel 8 [Arabidopsis thaliana] | 4 | 11 | 19 | 7 |
| AT1G49490 | homodirectional | -1.4757142192786172 | -1.0555553567967992 | AT1G49490 | -- | GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization; | -- | NP_001320463.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana] | 69 | 73 | 17 | 27 |
| AT1G53480 | homodirectional | -1.4787174487018375 | -2.014045053341304 | AT1G53480 | -- | GO:0008150,biological_process; | -- | NP_001185210.1 mto 1 responding down 1 [Arabidopsis thaliana] | 22 | 25 | 6 | 2 |
| AT1G67330 | homodirectional | 1.2759202376500542 | 1.2518267844989206 | AT1G67330 | -- | GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006479,protein methylation; GO:0009827,plant-type cell wall modification; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0030775,glucuronoxylan 4-O-methyltransferase activity; GO:0045492,xylan biosynthetic process; GO:0071554,cell wall organization or biogenesis; | -- | NP_176901.1 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana] | 11 | 3 | 15 | 7 |
| AT1G67870 | homodirectional | -1.2431108702264588 | -1.4508734249800177 | AT1G67870 | -- | GO:0008150,biological_process; | -- | KAG7658789.1 hypothetical protein ISN44_As01g057450 [Arabidopsis suecica] | 700 | 580 | 134 | 168 |
| AT1G68940 | homodirectional | -1.068680285455804 | -1.0937670528266714 | AT1G68940 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination; | -- | NP_001319353.1 Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana] | 14 | 6 | 3 | 3 |
| AT1G72280 | homodirectional | -1.8301584713784889 | -1.1319428270316263 | AT1G72280 | -- | GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0015035,protein-disulfide reductase activity; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016972,thiol oxidase activity; GO:0034975,protein folding in endoplasmic reticulum; GO:0071949,FAD binding; | ERO1L; ERO1-like protein alpha [EC:1.8.4.-]; K10950; | NP_177372.1 endoplasmic reticulum oxidoreductins 1 [Arabidopsis thaliana] | 189 | 131 | 43 | 51 |
| AT2G03630 | homodirectional | 1.486341978910953 | 1.123467185129733 | AT2G03630 | -- | -- | -- | NP_001318192.1 suppressor SRP40-like protein [Arabidopsis thaliana] | 9 | 7 | 13 | 10 |
| AT2G30830 | homodirectional | -1.118203467840868 | -1.4001746755600275 | AT2G30830 | -- | GO:0008150,biological_process; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; | -- | NP_180641.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana] | 15 | 15 | 7 | 1 |
| AT2G35658 | homodirectional | -1.9941616589089712 | -1.816636710092048 | AT2G35658 | -- | GO:0003674,molecular_function; GO:0016020,membrane; | -- | NP_001118445.1 transmembrane protein [Arabidopsis thaliana] | 17 | 9 | 4 | 1 |
| AT2G36090 | homodirectional | 1.284407545344614 | 1.0555263420563008 | AT2G36090 | -- | GO:0005515,protein binding; GO:0016020,membrane; | -- | NP_181153.1 F-box family protein [Arabidopsis thaliana] | 10 | 5 | 15 | 6 |
| AT2G38470 | homodirectional | 1.2103630376577237 | 1.1032011877211811 | AT2G38470 | WRKY | GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009627,systemic acquired resistance; GO:0009651,response to salt stress; GO:0010120,camalexin biosynthetic process; GO:0010508,positive regulation of autophagy; GO:0034605,cellular response to heat; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0070370,cellular heat acclimation; | WRKY33; WRKY transcription factor 33; K13424; | NP_181381.2 WRKY DNA-binding protein 33 [Arabidopsis thaliana] | 13 | 15 | 22 | 18 |
| AT2G43560 | homodirectional | -1.0572838739848047 | -1.1925023848459535 | AT2G43560 | -- | GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016853,isomerase activity; GO:0031977,thylakoid lumen; | E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802; | NP_181884.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] | 123 | 129 | 45 | 29 |
| AT2G44140 | homodirectional | 1.374057233853635 | 1.1476659075931681 | AT2G44140 | -- | GO:0004175,endopeptidase activity; GO:0005575,cellular_component; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity; | ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342; | NP_001324765.1 Peptidase family C54 protein [Arabidopsis thaliana] | 90 | 68 | 152 | 83 |
| AT2G44360 | homodirectional | 2.0382432017053027 | 1.7116868914199568 | AT2G44360 | -- | GO:0005575,cellular_component; | -- | NP_181964.1 ecotropic viral integration site protein [Arabidopsis thaliana] | 17 | 16 | 37 | 34 |
| AT3G01990 | homodirectional | 1.2312288081826095 | 1.4820767210670591 | AT3G01990 | -- | GO:0005515,protein binding; GO:0016597,amino acid binding; | -- | NP_001327455.1 ACT domain repeat 6 [Arabidopsis thaliana] | 7 | 5 | 7 | 14 |
| AT3G16240 | homodirectional | -1.0537873968658025 | -1.2815958531714076 | AT3G16240 | -- | GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009705,plant-type vacuole membrane; GO:0009941,chloroplast envelope; GO:0015200,methylammonium transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042802,identical protein binding; GO:0042807,central vacuole; GO:0055085,transmembrane transport; GO:0072489,methylammonium transmembrane transport; | -- | NP_188245.1 delta tonoplast integral protein [Arabidopsis thaliana] | 2617 | 2251 | 739 | 584 |
| AT3G25490 | homodirectional | -1.582493527728936 | -1.0481597521133836 | AT3G25490 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; | -- | NP_189176.1 Protein kinase family protein [Arabidopsis thaliana] | 22 | 14 | 4 | 7 |
| AT3G48080 | homodirectional | -2.202869948256778 | -1.476454625279522 | AT3G48080 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0016787,hydrolase activity; GO:0106093,EDS1 disease-resistance complex; | EDS1; enhanced disease susceptibility 1 protein; K18875; | NP_190391.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 36 | 6 | 8 | 2 |
| AT3G52160 | homodirectional | -1.6881886900135732 | -1.1968820313599795 | AT3G52160 | -- | GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity; | KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397; | ABK28598.1 unknown, partial [Arabidopsis thaliana] | 141 | 127 | 41 | 36 |
| AT3G54890 | homodirectional | -1.282790832778837 | -1.03506362538564 | AT3G54890 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; | LHCA1; light-harvesting complex I chlorophyll a/b binding protein 1; K08907; | NP_191049.1 chlorophyll a-b binding protein 6 [Arabidopsis thaliana] | 2453 | 2497 | 891 | 713 |
| AT3G63390 | homodirectional | 1.2190450538031583 | 1.0269618029893293 | AT3G63390 | -- | GO:0009536,plastid; | -- | NP_567146.1 hypothetical protein AT3G63390 [Arabidopsis thaliana] | 8 | 8 | 14 | 8 |
| AT4G00850 | homodirectional | 1.1660360048080345 | 1.9066647014912073 | AT4G00850 | -- | GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008283,cell population proliferation; GO:0016020,membrane; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048366,leaf development; GO:0051301,cell division; | -- | NP_567194.1 GRF1-interacting factor 3 [Arabidopsis thaliana] | 8 | 2 | 8 | 15 |
| AT4G14050 | homodirectional | -3.150962251214652 | -1.4634025163819866 | AT4G14050 | -- | GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0016554,cytidine to uridine editing; | -- | NP_001329428.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana] | 42 | 14 | 7 | 6 |
| AT4G15260 | homodirectional | -1.9123934187853997 | -1.834853061510474 | AT4G15260 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; | -- | NP_193261.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 16 | 22 | 3 | 4 |
| AT4G30490 | homodirectional | 1.402602747563192 | 1.1539550296969034 | AT4G30490 | -- | GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity; | -- | NP_567847.1 AFG1-like ATPase family protein [Arabidopsis thaliana] | 30 | 51 | 95 | 32 |
| AT5G10600 | homodirectional | -2.855392216683833 | -1.046755989034985 | AT5G10600 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism; | -- | NP_196622.2 cytochrome P450, family 81, subfamily K, polypeptide 2 [Arabidopsis thaliana] | 10 | 17 | 6 | 3 |
| AT5G60250 | homodirectional | 1.027551265449763 | 2.051775024968742 | AT5G60250 | -- | GO:0000151,ubiquitin ligase complex; GO:0000209,protein polyubiquitination; GO:0003676,nucleic acid binding; GO:0004523,RNA-DNA hybrid ribonuclease activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; | -- | NP_200833.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] | 34 | 44 | 126 | 91 |
| AT1G17600 | opposite change | -1.4392049919018646 | 1.2124079820911635 | AT1G17600 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043531,ADP binding; GO:0045088,regulation of innate immune response; | -- | NP_173203.2 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana] | 16 | 1 | 10 | 14 |
| AT1G23300 | opposite change | 1.2994747795259398 | -1.1427034669822689 | AT1G23300 | -- | GO:0005774,vacuolar membrane; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane; | -- | NP_173744.1 MATE efflux family protein [Arabidopsis thaliana] | 17 | 4 | 3 | 3 |
| AT1G54040 | opposite change | -1.6390525730897345 | 1.3888901893542922 | AT1G54040 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0042742,defense response to bacterium; GO:0050790,regulation of catalytic activity; GO:0080028,nitrile biosynthetic process; | -- | NP_175806.3 epithiospecifier protein [Arabidopsis thaliana] | 30 | 43 | 86 | 45 |
| AT1G74550 | opposite change | 1.6827817765461228 | -1.4865047707826329 | AT1G74550 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity; | CYP98A9; cytochrome P450 family 98 subfamily A polypeptide 9 [EC:1.14.13.-]; K23662; | NP_177595.1 cytochrome P450, family 98, subfamily A, polypeptide 9 [Arabidopsis thaliana] | 458 | 372 | 113 | 83 |
| AT1G78130 | opposite change | -1.0424677549895986 | 1.7008302565035007 | AT1G78130 | -- | GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; | -- | NP_177937.1 Major facilitator superfamily protein [Arabidopsis thaliana] | 3 | 9 | 17 | 10 |
| AT2G38780 | opposite change | 1.925513106975676 | -1.4135299386542974 | AT2G38780 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016020,membrane; | -- | NP_001324243.1 cytochrome C oxidase subunit [Arabidopsis thaliana] | 45 | 27 | 12 | 6 |
| AT2G41940 | opposite change | -1.0823449578330993 | 1.3204886712730664 | AT2G41940 | C2H2 | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010026,trichome differentiation; GO:0010090,trichome morphogenesis; GO:0030154,cell differentiation; GO:0046872,metal ion binding; | -- | NP_181725.1 zinc finger protein 8 [Arabidopsis thaliana] | 9 | 7 | 13 | 13 |
| AT2G44790 | opposite change | 1.0132354173661071 | -1.2477277059734166 | AT2G44790 | -- | GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; | -- | NP_182006.1 uclacyanin 2 [Arabidopsis thaliana] | 49 | 44 | 15 | 11 |
| AT2G44850 | opposite change | 1.9349917912144512 | -1.092733137982522 | AT2G44850 | -- | GO:0005739,mitochondrion; | -- | NP_182012.1 hypothetical protein AT2G44850 [Arabidopsis thaliana] | 20 | 34 | 9 | 8 |
| AT3G47580 | opposite change | 1.1740040275945998 | -1.8706745468511763 | AT3G47580 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; | -- | NP_190342.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 16 | 6 | 3 | 1 |
| AT3G56030 | opposite change | -1.0258639696647256 | 1.6507056933808637 | AT3G56030 | -- | GO:0005515,protein binding; GO:0005739,mitochondrion; | -- | NP_191162.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] | 7 | 5 | 15 | 10 |
| AT4G14100 | opposite change | 1.0084420080548595 | -1.1953291969185806 | AT4G14100 | -- | GO:0000325,plant-type vacuole; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0099503,secretory vesicle; | -- | NP_567420.1 transferases, transferring glycosyl groups [Arabidopsis thaliana] | 70 | 54 | 33 | 5 |
| AT4G34560 | opposite change | 8.584649387288803 | -1.3145871179841242 | AT4G34560 | -- | GO:0016020,membrane; | -- | NP_195182.2 transmembrane protein [Arabidopsis thaliana] | 18 | 21 | 3 | 7 |
| AT4G39780 | opposite change | 1.0025034721011516 | -1.0668592768636211 | AT4G39780 | ERF | GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding; | -- | NP_195688.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana] | 14 | 22 | 9 | 3 |
| AT5G37490 | opposite change | 4.139217183101774 | -1.8712197408622853 | AT5G37490 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity; | -- | NP_198565.1 ARM repeat superfamily protein [Arabidopsis thaliana] | 9 | 16 | 5 | 0 |
| AT1G02110 | transcription only | -1.1328403062881045 | 0.5816131710566327 | AT1G02110 | -- | -- | -- | NP_171713.2 bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana] | 96 | 52 | 84 | 61 |
| AT1G03140 | transcription only | -3.368070099807457 | 0.3508042815452916 | AT1G03140 | -- | GO:0000350,generation of catalytic spliceosome for second transesterification step; GO:0000380,alternative mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071021,U2-type post-spliceosomal complex; GO:0110165,cellular anatomical entity; | PRPF18, PRP18; pre-mRNA-splicing factor 18; K12817; | NP_563676.1 splicing factor Prp18 family protein [Arabidopsis thaliana] | 188 | 172 | 165 | 138 |
| AT1G03730 | transcription only | 1.143833823770539 | -0.5262948409865126 | AT1G03730 | -- | GO:0016020,membrane; | -- | NP_563690.1 pyrroline-5-carboxylate reductase [Arabidopsis thaliana] | 28 | 15 | 14 | 6 |
| AT1G03750 | transcription only | 2.0658540984561986 | 0.03490219629399271 | AT1G03750 | -- | GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0006974,cellular response to DNA damage stimulus; GO:0016787,hydrolase activity; GO:0140658,ATP-dependent chromatin remodeler activity; | -- | NP_171871.2 switch 2 [Arabidopsis thaliana] | 19 | 22 | 21 | 8 |
| AT1G05560 | transcription only | -1.0808156286548618 | -0.04418538424755097 | AT1G05560 | -- | GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005856,cytoskeleton; GO:0008194,UDP-glycosyltransferase activity; GO:0009524,phragmoplast; GO:0009751,response to salicylic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0046482,para-aminobenzoic acid metabolic process; GO:0047215,indole-3-acetate beta-glucosyltransferase activity; GO:0048471,perinuclear region of cytoplasm; GO:0080002,UDP-glucose:4-aminobenzoate acylglucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; | -- | NP_001320882.1 UDP-glucosyltransferase 75B1 [Arabidopsis thaliana] | 40 | 44 | 29 | 25 |
| AT1G06000 | transcription only | -1.0580173019695096 | -0.5824292231980727 | AT1G06000 | -- | GO:0005576,extracellular region; GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0103077,quercetin 3-glucoside 7-O-rhamnosyltransferase activity; GO:0103078,quercetin 3-rhamnoside 7-O-rhamnosyltransferase activity; | -- | NP_563756.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 780 | 697 | 367 | 286 |
| AT1G06070 | transcription only | 1.1331053467460528 | -0.07296473673914014 | AT1G06070 | bZIP | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; | -- | NP_172097.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana] | 91 | 68 | 64 | 37 |
| AT1G06250 | transcription only | -1.1971494915741276 | -0.1335188616387536 | AT1G06250 | -- | GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; | -- | NP_172115.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 35 | 39 | 20 | 24 |
| AT1G06660 | transcription only | 1.3610559851193755 | 0.12986498498483143 | AT1G06660 | -- | GO:0006355,regulation of DNA-templated transcription; GO:0007142,male meiosis II; GO:0009556,microsporogenesis; GO:0051321,meiotic cell cycle; | -- | NP_172151.2 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit [Arabidopsis thaliana] | 21 | 25 | 21 | 13 |
| AT1G06670 | transcription only | -2.630296585589261 | 0.4043187055131579 | AT1G06670 | -- | GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0032508,DNA duplex unwinding; | DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]; K14442; | NP_172152.1 nuclear DEIH-boxhelicase [Arabidopsis thaliana] | 305 | 300 | 275 | 252 |
| AT1G06680 | transcription only | -1.3947953203710095 | -0.46203927321069616 | AT1G06680 | -- | GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005576,extracellular region; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0019684,photosynthesis, light reaction; GO:0019898,extrinsic component of membrane; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0048046,apoplast; GO:1901149,salicylic acid binding; | psbP; photosystem II oxygen-evolving enhancer protein 2; K02717; | NP_172153.1 photosystem II subunit P-1 [Arabidopsis thaliana] | 5038 | 4532 | 2627 | 1982 |
| AT1G07050 | transcription only | -1.8893736331499071 | 0.9727288156977988 | AT1G07050 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; | -- | NP_001320785.1 CCT motif family protein [Arabidopsis thaliana] | 47 | 51 | 77 | 52 |
| AT1G07510 | transcription only | 1.2813395240238283 | -0.13319590963648795 | AT1G07510 | -- | GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005745,m-AAA complex; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0034982,mitochondrial protein processing; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; | AFG3; AFG3 family protein [EC:3.4.24.-]; K08956; | NP_172231.2 FTSH protease 10 [Arabidopsis thaliana] | 466 | 433 | 309 | 235 |
| AT1G07720 | transcription only | -1.065818114191479 | -0.39394946492973487 | AT1G07720 | -- | GO:0005783,endoplasmic reticulum; GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity; | KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397; | NP_001322003.1 3-ketoacyl-CoA synthase 3 [Arabidopsis thaliana] | 310 | 219 | 135 | 127 |
| AT1G08460 | transcription only | -1.9779203181335585 | 0.06990772731729009 | AT1G08460 | -- | GO:0004407,histone deacetylase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; | -- | NP_001320319.1 histone deacetylase 8 [Arabidopsis thaliana] | 86 | 65 | 62 | 43 |
| AT1G08560 | transcription only | -1.5679555562825984 | -0.21993973668251865 | AT1G08560 | -- | GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0006887,exocytosis; GO:0006906,vesicle fusion; GO:0007049,cell cycle; GO:0009504,cell plate; GO:0009506,plasmodesma; GO:0009524,phragmoplast; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0048278,vesicle docking; GO:0051301,cell division; GO:0061025,membrane fusion; GO:0110165,cellular anatomical entity; | STX1B_2_3; syntaxin 1B/2/3; K08486; | NP_172332.1 syntaxin of plants 111 [Arabidopsis thaliana] | 397 | 394 | 253 | 198 |
| AT1G08840 | transcription only | 1.4032536106631126 | 0.15380297740126803 | AT1G08840 | -- | GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003824,catalytic activity; GO:0004386,helicase activity; GO:0004518,nuclease activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0006259,DNA metabolic process; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0008152,metabolic process; GO:0010073,meristem maintenance; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017108,5'-flap endonuclease activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0033567,DNA replication, Okazaki fragment processing; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0071932,replication fork reversal; GO:0090305,nucleic acid phosphodiester bond hydrolysis; | DNA2; DNA replication ATP-dependent helicase Dna2 [EC:3.6.4.12]; K10742; | NP_001184943.1 DNA replication helicase [Arabidopsis thaliana] | 34 | 37 | 21 | 30 |
| AT1G09420 | transcription only | -1.2308768564302217 | 0.2598702088513619 | AT1G09420 | -- | GO:0004345,glucose-6-phosphate dehydrogenase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050661,NADP binding; | G6PD, zwf; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]; K00036; | NP_563844.1 glucose-6-phosphate dehydrogenase 4 [Arabidopsis thaliana] | 9 | 10 | 13 | 3 |
| AT1G09430 | transcription only | -1.0210305634860617 | -0.2712133026785179 | AT1G09430 | -- | GO:0000166,nucleotide binding; GO:0003878,ATP citrate synthase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006085,acetyl-CoA biosynthetic process; GO:0006629,lipid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; | ACLY; ATP citrate (pro-S)-lyase [EC:2.3.3.8]; K01648; | NP_172414.1 ATP-citrate lyase A-3 [Arabidopsis thaliana] | 195 | 206 | 129 | 93 |
| AT1G09800 | transcription only | -1.0020639025670224 | -0.8308516707269181 | AT1G09800 | -- | GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0106029,tRNA pseudouridine synthase activity; | -- | NP_001322359.1 Pseudouridine synthase family protein [Arabidopsis thaliana] | 44 | 27 | 14 | 12 |
| AT1G10500 | transcription only | 1.0805674149452262 | -0.6110489575351318 | AT1G10500 | -- | GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0030674,protein-macromolecule adaptor activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; | -- | NP_172520.1 chloroplast-localized ISCA-like protein [Arabidopsis thaliana] | 202 | 210 | 104 | 76 |
| AT1G10760 | transcription only | -2.2374359892494144 | 0.38829538649844986 | AT1G10760 | -- | GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009610,response to symbiotic fungus; GO:0009631,cold acclimation; GO:0009941,chloroplast envelope; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0050521,alpha-glucan, water dikinase activity; GO:0102216,maltodextrin water dikinase; GO:0102218,starch, H2O dikinase activity; | R1; alpha-glucan, water dikinase [EC:2.7.9.4]; K08244; | NP_001318975.1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein [Arabidopsis thaliana] | 1123 | 1100 | 1121 | 818 |
| AT1G11860 | transcription only | -1.2144291477176552 | -0.644096752056815 | AT1G11860 | -- | GO:0003729,mRNA binding; GO:0004047,aminomethyltransferase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0006546,glycine catabolic process; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; | gcvT, AMT; aminomethyltransferase [EC:2.1.2.10]; K00605; | NP_001318983.1 Glycine cleavage T-protein family [Arabidopsis thaliana] | 1786 | 1513 | 815 | 586 |
| AT1G12110 | transcription only | -1.1403260117012628 | 0.11655307952827916 | AT1G12110 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009414,response to water deprivation; GO:0009635,response to herbicide; GO:0009734,auxin-activated signaling pathway; GO:0010167,response to nitrate; GO:0010540,basipetal auxin transport; GO:0015112,nitrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0048527,lateral root development; GO:0048573,photoperiodism, flowering; GO:0055085,transmembrane transport; | -- | NP_563899.1 nitrate transporter 1.1 [Arabidopsis thaliana] | 65 | 68 | 65 | 33 |
| AT1G12330 | transcription only | -1.3623555821255495 | -0.08783233856904187 | AT1G12330 | -- | GO:0003674,molecular_function; GO:0016301,kinase activity; GO:0016310,phosphorylation; | -- | NP_172697.2 cyclin-dependent kinase-like protein [Arabidopsis thaliana] | 111 | 114 | 75 | 65 |
| AT1G12840 | transcription only | 1.36217919839765 | -0.2043170262906376 | AT1G12840 | -- | GO:0000221,vacuolar proton-transporting V-type ATPase, V1 domain; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009826,unidimensional cell growth; GO:0015078,proton transmembrane transporter activity; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport; | ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C; K02148; | NP_563916.1 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) [Arabidopsis thaliana] | 894 | 778 | 561 | 403 |
| AT1G13150 | transcription only | -1.777115707701245 | -0.33841422538006954 | AT1G13150 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_172774.1 cytochrome P450, family 86, subfamily C, polypeptide 4 [Arabidopsis thaliana] | 86 | 43 | 30 | 35 |
| AT1G13330 | transcription only | 1.426140267639943 | -0.5603640057823909 | AT1G13330 | -- | GO:0000709,meiotic joint molecule formation; GO:0000794,condensed nuclear chromosome; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0006310,DNA recombination; GO:0007129,homologous chromosome pairing at meiosis; GO:0007131,reciprocal meiotic recombination; GO:0010774,meiotic strand invasion involved in reciprocal meiotic recombination; GO:0050790,regulation of catalytic activity; GO:0051026,chiasma assembly; GO:0051321,meiotic cell cycle; GO:0090304,nucleic acid metabolic process; GO:0120230,recombinase activator activity; GO:0120231,DNA recombinase auxiliary factor complex; | -- | NP_172791.1 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [Arabidopsis thaliana] | 12 | 7 | 8 | 1 |
| AT1G13690 | transcription only | 1.2704785060993882 | -0.33827491369762747 | AT1G13690 | -- | GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0008150,biological_process; | -- | NP_563931.2 ATPase E1 [Arabidopsis thaliana] | 216 | 162 | 106 | 90 |
| AT1G14380 | transcription only | 1.324704190244674 | 0.00806937586890399 | AT1G14380 | -- | GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex; | -- | NP_001031046.1 IQ-domain 28 [Arabidopsis thaliana] | 126 | 141 | 106 | 74 |
| AT1G14650 | transcription only | 3.6610348007412337 | 0.2234665285837715 | AT1G14650 | -- | GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005684,U2-type spliceosomal complex; GO:0005686,U2 snRNP; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0045292,mRNA cis splicing, via spliceosome; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome; | SF3A1, SAP114; splicing factor 3A subunit 1; K12825; | AAF63169.1 T5E21.13 [Arabidopsis thaliana] | 319 | 278 | 290 | 177 |
| AT1G14890 | transcription only | 1.1085669269560487 | -0.42649239617510887 | AT1G14890 | -- | GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; | -- | NP_563960.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana] | 107 | 143 | 77 | 49 |
| AT1G15030 | transcription only | 1.5107483897550549 | 0.32120398856003446 | AT1G15030 | -- | GO:0008150,biological_process; | -- | NP_001320245.1 hypothetical protein (DUF789) [Arabidopsis thaliana] | 53 | 76 | 70 | 40 |
| AT1G15240 | transcription only | 1.9474133336160304 | -0.07922205115897082 | AT1G15240 | -- | GO:0005768,endosome; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding; | SNX13; sorting nexin-13; K17925; | NP_001319008.1 phox (PX) domain-containing protein [Arabidopsis thaliana] | 88 | 91 | 49 | 61 |
| AT1G15415 | transcription only | -1.389514096746109 | 0.4031861308833056 | AT1G15415 | -- | GO:0005634,nucleus; GO:0005829,cytosol; | -- | NP_172994.1 late embryogenesis abundant-like protein [Arabidopsis thaliana] | 14 | 20 | 16 | 14 |
| AT1G15700 | transcription only | -1.2081409822604967 | 0.41265636543244594 | AT1G15700 | -- | GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009544,chloroplast ATP synthase complex; GO:0009579,thylakoid; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0030234,enzyme regulator activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0050790,regulation of catalytic activity; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; GO:2000067,regulation of root morphogenesis; | ATPF1G, atpG; F-type H+-transporting ATPase subunit gamma; K02115; | NP_173022.1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana] | 40 | 39 | 35 | 34 |
| AT1G15990 | transcription only | -1.1547983312180174 | 0.1713985163881798 | AT1G15990 | -- | GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0090406,pollen tube; | CNGC; cyclic nucleotide gated channel, plant; K05391; | NP_001319014.1 cyclic nucleotide gated channel 7 [Arabidopsis thaliana] | 25 | 16 | 21 | 10 |
| AT1G16750 | transcription only | 1.519291637346759 | -0.10924602988959062 | AT1G16750 | -- | -- | -- | NP_564005.2 GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana] | 87 | 67 | 47 | 46 |
| AT1G17100 | transcription only | -1.1780639357290963 | -0.5640379253866021 | AT1G17100 | -- | GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0020037,heme binding; GO:0099503,secretory vesicle; GO:0110165,cellular anatomical entity; | -- | NP_173153.1 SOUL heme-binding family protein [Arabidopsis thaliana] | 308 | 263 | 174 | 87 |
| AT1G17220 | transcription only | -1.251488842106875 | -0.3238327405668705 | AT1G17220 | -- | GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006412,translation; GO:0006413,translational initiation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; | -- | NP_173165.1 Translation initiation factor 2, small GTP-binding protein [Arabidopsis thaliana] | 663 | 526 | 339 | 285 |
| AT1G17230 | transcription only | -1.233701632096922 | 0.06282710585551164 | AT1G17230 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; | -- | NP_173166.2 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana] | 38 | 35 | 31 | 20 |
| AT1G18390 | transcription only | 1.9992717429224176 | -0.4138661818016924 | AT1G18390 | -- | GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0030247,polysaccharide binding; | -- | NP_173275.4 Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana] | 11 | 10 | 9 | 2 |
| AT1G18640 | transcription only | 1.0280486095096324 | -0.08100117137643355 | AT1G18640 | -- | GO:0000096,sulfur amino acid metabolic process; GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0006563,L-serine metabolic process; GO:0006564,L-serine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016311,dephosphorylation; GO:0016787,hydrolase activity; GO:0036424,L-phosphoserine phosphatase activity; GO:0046872,metal ion binding; GO:0048364,root development; | serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3]; K01079; | NP_973858.1 3-phosphoserine phosphatase [Arabidopsis thaliana] | 129 | 89 | 85 | 52 |
| AT1G20340 | transcription only | -1.2665898496542642 | -0.8935301132939873 | AT1G20340 | -- | GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016020,membrane; GO:0017148,negative regulation of translation; GO:0019904,protein domain specific binding; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046028,electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding; GO:0055035,plastid thylakoid membrane; GO:0055070,copper ion homeostasis; | petE; plastocyanin; K02638; | NP_173459.1 Cupredoxin superfamily protein [Arabidopsis thaliana] | 13581 | 11403 | 4456 | 4311 |
| AT1G20400 | transcription only | 1.3073892579251525 | 0.03378259033293431 | AT1G20400 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; | -- | NP_173465.1 hypothetical protein (DUF1204) [Arabidopsis thaliana] | 15 | 6 | 3 | 10 |
| AT1G21640 | transcription only | 1.3413730611864252 | -0.614875413791741 | AT1G21640 | -- | GO:0000166,nucleotide binding; GO:0003951,NAD+ kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0006741,NADP biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019674,NAD metabolic process; | ppnK, NADK; NAD+ kinase [EC:2.7.1.23]; K00858; | NP_001185057.1 NAD kinase 2 [Arabidopsis thaliana] | 150 | 120 | 58 | 57 |
| AT1G21670 | transcription only | -1.7171104453225374 | -0.604722746893471 | AT1G21670 | -- | GO:0099503,secretory vesicle; | -- | NP_564146.1 DPP6 amino-terminal domain protein [Arabidopsis thaliana] | 154 | 140 | 66 | 61 |
| AT1G22400 | transcription only | -2.332410841199785 | -0.6894802037651008 | AT1G22400 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0050403,trans-zeatin O-beta-D-glucosyltransferase activity; GO:0050502,cis-zeatin O-beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; | UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452; | NP_173656.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 164 | 113 | 59 | 53 |
| AT1G22730 | transcription only | -1.445763100308461 | 0.5133423941484621 | AT1G22730 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009646,response to absence of light; GO:0043022,ribosome binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0090549,response to carbon starvation; | -- | NP_173687.1 MA3 domain-containing protein [Arabidopsis thaliana] | 72 | 58 | 77 | 47 |
| AT1G22850 | transcription only | 1.5696837327853312 | -0.5045217107704529 | AT1G22850 | -- | GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016020,membrane; | -- | VYS46932.1 unnamed protein product [Arabidopsis thaliana] | 78 | 57 | 43 | 21 |
| AT1G22910 | transcription only | -2.0262440878062145 | -0.6732512960060271 | AT1G22910 | -- | GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0030154,cell differentiation; | -- | NP_973888.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 92 | 83 | 37 | 35 |
| AT1G23130 | transcription only | -1.078096300217256 | -0.38430495262120334 | AT1G23130 | -- | GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response; | -- | NP_564190.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana] | 394 | 365 | 209 | 175 |
| AT1G23400 | transcription only | 2.4186341776661826 | 0.2653233987229358 | AT1G23400 | -- | GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:1990904,ribonucleoprotein complex; | -- | NP_173754.2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] | 156 | 165 | 151 | 107 |
| AT1G24320 | transcription only | 1.0841061845211013 | 0.31519529326558704 | AT1G24320 | -- | GO:0004573,Glc3Man9GlcNAc2 oligosaccharide glucosidase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005975,carbohydrate metabolic process; GO:0006487,protein N-linked glycosylation; GO:0008152,metabolic process; GO:0009311,oligosaccharide metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; | MOGS; mannosyl-oligosaccharide glucosidase [EC:3.2.1.106]; K01228; | NP_173842.2 Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana] | 21 | 4 | 7 | 12 |
| AT1G25400 | transcription only | 1.0928071474646597 | 0.4230693638491609 | AT1G25400 | -- | GO:0016020,membrane; | -- | NP_001185095.1 transmembrane protein [Arabidopsis thaliana] | 7 | 10 | 7 | 8 |
| AT1G26760 | transcription only | 1.0707002837612905 | -0.26323269676396155 | AT1G26760 | -- | GO:0005515,protein binding; | -- | NP_173998.2 SET domain protein 35 [Arabidopsis thaliana] | 25 | 48 | 22 | 19 |
| AT1G27210 | transcription only | -1.1519874196860482 | 0.11098077340297656 | AT1G27210 | -- | GO:0005515,protein binding; GO:0005874,microtubule; GO:0008017,microtubule binding; | -- | NP_564273.1 ARM repeat superfamily protein [Arabidopsis thaliana] | 151 | 99 | 94 | 82 |
| AT1G28190 | transcription only | 2.227104033552396 | -0.5288776034557522 | AT1G28190 | -- | GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009620,response to fungus; | -- | NP_174140.1 hypothetical protein AT1G28190 [Arabidopsis thaliana] | 34 | 11 | 11 | 9 |
| AT1G28610 | transcription only | -1.578658263206404 | 0.8696985678280613 | AT1G28610 | -- | GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; | -- | NP_973932.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana] | 21 | 12 | 20 | 19 |
| AT1G29330 | transcription only | 1.3347422767782868 | 0.4482547266028011 | AT1G29330 | -- | GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005801,cis-Golgi network; GO:0006621,protein retention in ER lumen; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0046923,ER retention sequence binding; | KDELR; ER lumen protein retaining receptor; K10949; | NP_564326.1 ER lumen protein retaining receptor family protein [Arabidopsis thaliana] | 69 | 53 | 58 | 51 |
| AT1G29380 | transcription only | -1.0339011941229426 | 0.4669982539277427 | AT1G29380 | -- | GO:0008150,biological_process; | -- | NP_001322587.1 Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana] | 13 | 11 | 18 | 5 |
| AT1G29910 | transcription only | -2.4336208267740105 | -0.3951949786914124 | AT1G29910 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009750,response to fructose; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; GO:0048046,apoplast; | LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912; | NP_564339.1 chlorophyll A/B binding protein 3 [Arabidopsis thaliana] | 1605 | 1556 | 889 | 705 |
| AT1G30540 | transcription only | -1.4703686712354176 | -0.7701074443031237 | AT1G30540 | -- | GO:0008150,biological_process; GO:0045127,N-acetylglucosamine kinase activity; GO:0046835,carbohydrate phosphorylation; | -- | NP_564358.1 Actin-like ATPase superfamily protein [Arabidopsis thaliana] | 49 | 35 | 16 | 16 |
| AT1G31330 | transcription only | -1.1603042113066022 | -0.10868400571804245 | AT1G31330 | -- | GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; | psaF; photosystem I subunit III; K02694; | NP_174418.1 photosystem I subunit F [Arabidopsis thaliana] | 1912 | 1850 | 1390 | 944 |
| AT1G32120 | transcription only | -1.3636850250567731 | -0.9349693672602984 | AT1G32120 | -- | GO:0010073,meristem maintenance; GO:0048507,meristem development; | -- | NP_174491.2 serine/threonine-protein phosphatase 7 long form-like protein [Arabidopsis thaliana] | 32 | 21 | 15 | 4 |
| AT1G33240 | transcription only | -1.4024331194966997 | -0.25718577554561145 | AT1G33240 | Trihelix | -- | -- | NP_001322395.1 GT-2-like 1 [Arabidopsis thaliana] | 111 | 109 | 73 | 50 |
| AT1G36380 | transcription only | 1.0965857218452857 | -0.8041489464547281 | AT1G36380 | -- | GO:0003674,molecular_function; GO:0016020,membrane; | -- | NP_564474.1 transmembrane protein [Arabidopsis thaliana] | 29 | 14 | 9 | 7 |
| AT1G43170 | transcription only | 1.6497564850048465 | 0.5869367473800503 | AT1G43170 | -- | GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; | RP-L3e, RPL3; large subunit ribosomal protein L3e; K02925; | NP_001031146.1 ribosomal protein 1 [Arabidopsis thaliana] | 3002 | 2792 | 3355 | 2438 |
| AT1G43670 | transcription only | -2.09360024539768 | -0.3072097603850679 | AT1G43670 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0005986,sucrose biosynthetic process; GO:0006000,fructose metabolic process; GO:0006002,fructose 6-phosphate metabolic process; GO:0006094,gluconeogenesis; GO:0009737,response to abscisic acid; GO:0009750,response to fructose; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0042132,fructose 1,6-bisphosphate 1-phosphatase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046872,metal ion binding; | FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11]; K03841; | NP_175032.1 Inositol monophosphatase family protein [Arabidopsis thaliana] | 458 | 431 | 239 | 232 |
| AT1G43710 | transcription only | -1.2998769635219456 | -0.0914017487941384 | AT1G43710 | -- | GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006580,ethanolamine metabolic process; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0016831,carboxy-lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030170,pyridoxal phosphate binding; GO:0102705,serine decarboxylase activity; GO:1901564,organonitrogen compound metabolic process; | -- | NP_175036.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana] | 359 | 276 | 217 | 175 |
| AT1G48620 | transcription only | -1.213596804218018 | 0.29180101654797763 | AT1G48620 | -- | GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination; | -- | NP_175295.1 high mobility group A5 [Arabidopsis thaliana] | 234 | 264 | 231 | 176 |
| AT1G48970 | transcription only | -1.1976478886242743 | -0.03503275058613016 | AT1G48970 | -- | GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0006413,translational initiation; GO:0016740,transferase activity; GO:0044237,cellular metabolic process; | EIF2B4; translation initiation factor eIF-2B subunit delta; K03680; | NP_175327.3 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana] | 83 | 78 | 63 | 42 |
| AT1G49140 | transcription only | 3.0319951039762163 | -0.26079110136641037 | AT1G49140 | -- | GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome; | NDUFB10; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10; K03966; | NP_001321329.1 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6) [Arabidopsis thaliana] | 74 | 92 | 43 | 48 |
| AT1G51590 | transcription only | 1.0756279905942845 | 0.22510952907449472 | AT1G51590 | -- | GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0004559,alpha-mannosidase activity; GO:0004571,mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; GO:0005509,calcium ion binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006486,protein glycosylation; GO:0006491,N-glycan processing; GO:0008152,metabolic process; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0046872,metal ion binding; | MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]; K01230; | NP_001031171.1 alpha-mannosidase 1 [Arabidopsis thaliana] | 105 | 90 | 81 | 69 |
| AT1G54680 | transcription only | 1.299838812036152 | -0.30368646271904887 | AT1G54680 | -- | GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006413,translational initiation; GO:0006508,proteolysis; GO:0016020,membrane; | -- | NP_001319230.1 translation initiation factor 3 subunit I [Arabidopsis thaliana] | 14 | 5 | 6 | 4 |
| AT1G55370 | transcription only | 1.1289158844333045 | -0.43784241536137464 | AT1G55370 | -- | GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010628,positive regulation of gene expression; GO:0016020,membrane; GO:0030246,carbohydrate binding; GO:0047938,glucose-6-phosphate 1-epimerase activity; | -- | NP_849810.1 NDH-dependent cyclic electron flow 5 [Arabidopsis thaliana] | 6 | 12 | 5 | 4 |
| AT1G55920 | transcription only | -1.2526968825633846 | -0.2007716553630186 | AT1G55920 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006535,cysteine biosynthetic process from serine; GO:0008652,cellular amino acid biosynthetic process; GO:0009001,serine O-acetyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009970,cellular response to sulfate starvation; GO:0016412,serine O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019344,cysteine biosynthetic process; | cysE; serine O-acetyltransferase [EC:2.3.1.30]; K00640; | NP_175988.1 serine acetyltransferase 2;1 [Arabidopsis thaliana] | 113 | 101 | 57 | 64 |
| AT1G56110 | transcription only | 1.5444811010298944 | 0.4782060886693915 | AT1G56110 | -- | GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; | NOP56; nucleolar protein 56; K14564; | NP_176007.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana] | 1470 | 1101 | 1411 | 964 |
| AT1G56160 | transcription only | 2.235935299231582 | 0.5114669036062626 | AT1G56160 | MYB | GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0010043,response to zinc ion; GO:0010468,regulation of gene expression; GO:0019748,secondary metabolic process; GO:0046686,response to cadmium ion; GO:0051365,cellular response to potassium ion starvation; GO:0055065,metal ion homeostasis; GO:1990359,stress response to zinc ion; GO:1990532,stress response to nickel ion; GO:1990641,response to iron ion starvation; | -- | NP_176012.1 myb domain protein 72 [Arabidopsis thaliana] | 20 | 4 | 0 | 19 |
| AT1G61520 | transcription only | -1.280703868105332 | -0.03884604458383843 | AT1G61520 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; | LHCA3; light-harvesting complex I chlorophyll a/b binding protein 3; K08909; | NP_001185280.1 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana] | 6180 | 5366 | 4219 | 3223 |
| AT1G61600 | transcription only | -1.8203549250786029 | 0.7129450059902739 | AT1G61600 | -- | -- | -- | NP_176354.1 DUF1262 family protein (DUF1262) [Arabidopsis thaliana] | 16 | 0 | 8 | 8 |
| AT1G62850 | transcription only | 1.2785824275174993 | -0.16793288962705238 | AT1G62850 | -- | GO:0003747,translation release factor activity; GO:0005634,nucleus; GO:0006415,translational termination; | -- | NP_001077760.1 Class I peptide chain release factor [Arabidopsis thaliana] | 30 | 33 | 19 | 18 |
| AT1G63980 | transcription only | 1.0398847904801254 | 0.3933768793026948 | AT1G63980 | -- | GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0042127,regulation of cell population proliferation; GO:0042254,ribosome biogenesis; GO:0042274,ribosomal small subunit biogenesis; GO:0090069,regulation of ribosome biogenesis; | -- | NP_564820.1 D111/G-patch domain-containing protein [Arabidopsis thaliana] | 93 | 77 | 91 | 58 |
| AT1G64510 | transcription only | -1.6894264822234364 | -0.8004462898993016 | AT1G64510 | -- | GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; | RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6; K02990; | NP_176632.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana] | 387 | 404 | 201 | 107 |
| AT1G64710 | transcription only | -1.9967171272604431 | 0.34583877254758566 | AT1G64710 | -- | GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity; | E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1]; K00001; | NP_176652.3 GroES-like zinc-binding alcohol dehydrogenase family protein [Arabidopsis thaliana] | 15 | 18 | 21 | 8 |
| AT1G64790 | transcription only | 6.233523756689867 | 0.22042095119690625 | AT1G64790 | -- | GO:0005634,nucleus; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009627,systemic acquired resistance; GO:0009682,induced systemic resistance; GO:0019887,protein kinase regulator activity; GO:0019901,protein kinase binding; GO:0033674,positive regulation of kinase activity; GO:0034198,cellular response to amino acid starvation; GO:0042742,defense response to bacterium; GO:0043022,ribosome binding; GO:0045087,innate immune response; | -- | NP_001322207.1 ILITYHIA [Arabidopsis thaliana] | 731 | 744 | 630 | 510 |
| AT1G65010 | transcription only | -1.1064635677159549 | -0.05480549908666592 | AT1G65010 | -- | GO:0005875,microtubule associated complex; GO:0007131,reciprocal meiotic recombination; GO:0009507,chloroplast; GO:0009536,plastid; | -- | NP_176681.4 WEB family protein (DUF827) [Arabidopsis thaliana] | 545 | 475 | 326 | 316 |
| AT1G65590 | transcription only | 2.072196025230244 | -0.3328148621719339 | AT1G65590 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004563,beta-N-acetylhexosaminidase activity; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0015929,hexosaminidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030203,glycosaminoglycan metabolic process; GO:0102148,N-acetyl-beta-D-galactosaminidase activity; | HEXA_B; hexosaminidase [EC:3.2.1.52]; K12373; | NP_176737.2 beta-hexosaminidase 3 [Arabidopsis thaliana] | 133 | 162 | 116 | 46 |
| AT1G67820 | transcription only | -1.8242377208840597 | -0.02063604889383052 | AT1G67820 | -- | GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0043169,cation binding; GO:0046872,metal ion binding; | -- | NP_176948.2 Protein phosphatase 2C family protein [Arabidopsis thaliana] | 18 | 31 | 15 | 17 |
| AT1G68010 | transcription only | -1.8628014680978584 | -0.6468801004310262 | AT1G68010 | -- | GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008266,poly(U) RNA binding; GO:0008465,glycerate dehydrogenase activity; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0042631,cellular response to water deprivation; GO:0048046,apoplast; GO:0051287,NAD binding; GO:0071482,cellular response to light stimulus; | HPR1; glycerate dehydrogenase [EC:1.1.1.29]; K15893; | NP_176968.1 hydroxypyruvate reductase [Arabidopsis thaliana] | 908 | 954 | 458 | 336 |
| AT1G68760 | transcription only | 1.095819891767457 | 0.5776361319022901 | AT1G68760 | -- | GO:0000210,NAD+ diphosphatase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006203,dGTP catabolic process; GO:0006974,cellular response to DNA damage stimulus; GO:0008413,8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0019177,dihydroneopterin triphosphate pyrophosphohydrolase activity; GO:0035529,NADH pyrophosphatase activity; GO:0035539,8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity; GO:0046872,metal ion binding; | -- | NP_177044.1 nudix hydrolase 1 [Arabidopsis thaliana] | 27 | 16 | 29 | 14 |
| AT1G69060 | transcription only | 1.2399546119715024 | 0.9042134127725684 | AT1G69060 | -- | GO:0000325,plant-type vacuole; GO:0003674,molecular_function; | -- | NP_849864.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana] | 24 | 15 | 33 | 16 |
| AT1G69160 | transcription only | -1.1021111478886991 | 0.07516132786717403 | AT1G69160 | -- | GO:0005886,plasma membrane; GO:0009734,auxin-activated signaling pathway; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0016020,membrane; GO:0060918,auxin transport; | -- | NP_564952.1 suppressor [Arabidopsis thaliana] | 20 | 25 | 14 | 17 |
| AT1G69260 | transcription only | 1.179714853832583 | -0.3107243376855939 | AT1G69260 | -- | GO:0005634,nucleus; GO:0007165,signal transduction; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0045892,negative regulation of DNA-templated transcription; | -- | NP_564956.1 ABI five binding protein [Arabidopsis thaliana] | 15 | 8 | 1 | 10 |
| AT1G70330 | transcription only | 1.409421220088671 | 0.0496484393686212 | AT1G70330 | -- | GO:0000325,plant-type vacuole; GO:0005337,nucleoside transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1901642,nucleoside transmembrane transport; | SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3; K15014; | NP_564987.2 equilibrative nucleotide transporter 1 [Arabidopsis thaliana] | 429 | 384 | 344 | 219 |
| AT1G70600 | transcription only | 1.1418460868287126 | 0.6866308630386553 | AT1G70600 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; | RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae; K02900; | NP_177217.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana] | 526 | 551 | 642 | 510 |
| AT1G71440 | transcription only | 1.7925943628202132 | -0.314366247509403 | AT1G71440 | -- | GO:0000226,microtubule cytoskeleton organization; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0007021,tubulin complex assembly; GO:0007023,post-chaperonin tubulin folding pathway; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0043014,alpha-tubulin binding; | -- | NP_565017.1 tubulin folding cofactor E / Pfifferling (PFI) [Arabidopsis thaliana] | 121 | 90 | 70 | 43 |
| AT1G72275 | transcription only | -2.417933920743007 | -0.3507986808890616 | AT1G72275 | -- | GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0035098,ESC/E(Z) complex; GO:0035102,PRC1 complex; GO:0046872,metal ion binding; | -- | NP_001320443.1 LOW protein: nuclease-like protein [Arabidopsis thaliana] | 13 | 7 | 10 | 1 |
| AT1G72360 | transcription only | 1.485125958012213 | 0.08173017451993503 | AT1G72360 | ERF | GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009723,response to ethylene; GO:0009873,ethylene-activated signaling pathway; GO:0034059,response to anoxia; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0071369,cellular response to ethylene stimulus; GO:0071454,cellular response to anoxia; GO:0071456,cellular response to hypoxia; | -- | NP_001077812.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana] | 10 | 5 | 4 | 6 |
| AT1G73200 | transcription only | -1.6231114300313112 | -0.38143957305766624 | AT1G73200 | -- | GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane; | -- | NP_177463.1 testis-expressed sequence 2-like protein (DUF2404) [Arabidopsis thaliana] | 130 | 89 | 71 | 41 |
| AT1G73970 | transcription only | 1.158275088593809 | -0.9437905646131224 | AT1G73970 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; | -- | NP_177537.2 obscurin-like protein [Arabidopsis thaliana] | 280 | 116 | 64 | 67 |
| AT1G74580 | transcription only | 1.2899517522763606 | 0.5055412964330896 | AT1G74580 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; | -- | NP_001322154.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana] | 16 | 23 | 20 | 17 |
| AT1G74800 | transcription only | 1.08741261720961 | 0.29316389811352633 | AT1G74800 | -- | GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008378,galactosyltransferase activity; GO:0010405,arabinogalactan protein metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0018258,protein O-linked glycosylation via hydroxyproline; GO:0030246,carbohydrate binding; GO:0034645,cellular macromolecule biosynthetic process; GO:0044238,primary metabolic process; GO:0080147,root hair cell development; GO:1901137,carbohydrate derivative biosynthetic process; GO:1990714,hydroxyproline O-galactosyltransferase activity; | -- | NP_177618.2 Galactosyltransferase family protein [Arabidopsis thaliana] | 86 | 81 | 78 | 58 |
| AT1G75290 | transcription only | -1.8498246701524992 | -0.822662115884237 | AT1G75290 | -- | GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity; | PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050; | NP_001321702.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana] | 23 | 24 | 6 | 11 |
| AT1G75820 | transcription only | -1.0909918424846334 | -0.7708158814683854 | AT1G75820 | -- | GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009934,regulation of meristem structural organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0036289,peptidyl-serine autophosphorylation; GO:0043621,protein self-association; GO:0106310,protein serine kinase activity; | E2.7.1.-; kinase [EC:2.7.1.-]; K00924; | AAB58929.1 CLV1 receptor kinase [Arabidopsis thaliana] | 137 | 91 | 57 | 32 |
| AT1G76090 | transcription only | -1.896582923792573 | -0.1421169284251004 | AT1G76090 | -- | GO:0003838,sterol 24-C-methyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008168,methyltransferase activity; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0030797,24-methylenesterol C-methyltransferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; | E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143]; K08242; | NP_177736.1 sterol methyltransferase 3 [Arabidopsis thaliana] | 320 | 240 | 198 | 138 |
| AT1G77122 | transcription only | 3.044378791453464 | -0.2101063968323772 | AT1G77122 | -- | GO:0008150,biological_process; | -- | NP_849898.1 Uncharacterized protein family UPF0090 [Arabidopsis thaliana] | 62 | 48 | 21 | 39 |
| AT1G77400 | transcription only | -1.7814178263053444 | -0.1393912077558886 | AT1G77400 | -- | -- | -- | NP_177864.1 extensin-like protein [Arabidopsis thaliana] | 15 | 13 | 5 | 11 |
| AT1G77940 | transcription only | 1.3518799459358204 | 0.7285610507915099 | AT1G77940 | -- | GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; | RP-L30e, RPL30; large subunit ribosomal protein L30e; K02908; | NP_565164.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] | 947 | 849 | 1062 | 899 |
| AT1G78000 | transcription only | 2.0660383764443635 | -0.01310145466812824 | AT1G78000 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0009970,cellular response to sulfate starvation; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport; | -- | NP_001321366.1 sulfate transporter 1;2 [Arabidopsis thaliana] | 47 | 47 | 30 | 31 |
| AT1G78040 | transcription only | 1.416564959116607 | -0.39315398588076433 | AT1G78040 | -- | GO:0005515,protein binding; | -- | NP_001077838.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] | 3616 | 3591 | 1995 | 1640 |
| AT1G78100 | transcription only | 1.0250653185212837 | -0.19752895806659787 | AT1G78100 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0009736,cytokinin-activated signaling pathway; GO:0010540,basipetal auxin transport; GO:0010541,acropetal auxin transport; GO:0016567,protein ubiquitination; | -- | NP_565169.1 F-box family protein [Arabidopsis thaliana] | 100 | 84 | 65 | 42 |
| AT1G78180 | transcription only | 2.9002691262037965 | -0.08401452300520175 | AT1G78180 | -- | GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0055085,transmembrane transport; | -- | NP_565171.4 Mitochondrial substrate carrier family protein [Arabidopsis thaliana] | 38 | 14 | 25 | 8 |
| AT1G78770 | transcription only | 1.495252275859805 | -0.0053838372415097 | AT1G78770 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0007091,metaphase/anaphase transition of mitotic cell cycle; GO:0010087,phloem or xylem histogenesis; GO:0016567,protein ubiquitination; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0032875,regulation of DNA endoreduplication; GO:0045842,positive regulation of mitotic metaphase/anaphase transition; GO:0051301,cell division; | APC6, CDC16; anaphase-promoting complex subunit 6; K03353; | NP_565188.1 anaphase promoting complex 6 [Arabidopsis thaliana] | 137 | 113 | 69 | 91 |
| AT1G79040 | transcription only | -1.0975879309935914 | -0.8522729803716482 | AT1G79040 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010270,photosystem II oxygen evolving complex assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042651,thylakoid membrane; | psbR; photosystem II 10kDa protein; K03541; | NP_178025.1 photosystem II subunit R [Arabidopsis thaliana] | 5278 | 4399 | 1887 | 1632 |
| AT1G79530 | transcription only | -1.209459128533494 | -0.0769106299502539 | AT1G79530 | -- | GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006096,glycolytic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0048658,anther wall tapetum development; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0080022,primary root development; GO:0080144,amino acid homeostasis; | GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]; K00134; | NP_178071.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 [Arabidopsis thaliana] | 427 | 402 | 271 | 246 |
| AT1G79700 | transcription only | 1.3401215408335894 | 0.279649471067397 | AT1G79700 | AP2 | GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045723,positive regulation of fatty acid biosynthetic process; GO:1901959,positive regulation of cutin biosynthetic process; GO:1904278,positive regulation of wax biosynthetic process; | -- | NP_001077849.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana] | 31 | 29 | 31 | 18 |
| AT1G79720 | transcription only | -1.5323823319965428 | -0.3351217869762135 | AT1G79720 | -- | GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0048046,apoplast; | -- | NP_565219.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana] | 128 | 129 | 74 | 61 |
| AT1G80310 | transcription only | -1.0095924439460708 | 0.01081744288834108 | AT1G80310 | -- | GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0015098,molybdate ion transmembrane transporter activity; GO:0015689,molybdate ion transport; GO:0016020,membrane; GO:0090414,molybdate ion export from vacuole; | -- | NP_178147.1 sulfate transmembrane transporter [Arabidopsis thaliana] | 91 | 74 | 79 | 34 |
| AT1G80760 | transcription only | 2.050563428950368 | -0.7305429158648896 | AT1G80760 | -- | GO:0005886,plasma membrane; GO:0015168,glycerol transmembrane transporter activity; GO:0015204,urea transmembrane transporter activity; GO:0015267,channel activity; GO:0015793,glycerol transmembrane transport; GO:0016020,membrane; GO:0035445,borate transmembrane transport; GO:0046713,borate transport; GO:0046715,active borate transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071918,urea transmembrane transport; GO:0080029,cellular response to boron-containing substance levels; | -- | NP_178191.1 NOD26-like intrinsic protein 6;1 [Arabidopsis thaliana] | 62 | 48 | 32 | 13 |
| AT1G80850 | transcription only | 1.205800874752996 | -0.19625881031427392 | AT1G80850 | -- | GO:0003824,catalytic activity; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0008725,DNA-3-methyladenine glycosylase activity; | tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]; K01246; | NP_178200.1 DNA glycosylase superfamily protein [Arabidopsis thaliana] | 53 | 41 | 30 | 24 |
| AT1G80910 | transcription only | 1.0297144995055072 | -0.31264960744321935 | AT1G80910 | -- | GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0016192,vesicle-mediated transport; GO:0035658,Mon1-Ccz1 complex; GO:0043231,intracellular membrane-bounded organelle; GO:0050790,regulation of catalytic activity; | -- | AAF14679.1 F23A5.27 [Arabidopsis thaliana] | 56 | 68 | 39 | 28 |
| AT2G01570 | transcription only | -1.1211474036529387 | -0.0969215558476133 | AT2G01570 | GRAS | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009938,negative regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010187,negative regulation of seed germination; GO:0010218,response to far red light; GO:0010628,positive regulation of gene expression; GO:0033206,meiotic cytokinesis; GO:0042176,regulation of protein catabolic process; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:1900033,negative regulation of trichome patterning; GO:1905614,negative regulation of developmental vegetative growth; GO:1905622,negative regulation of leaf development; GO:1990841,promoter-specific chromatin binding; GO:2000033,regulation of seed dormancy process; GO:2000377,regulation of reactive oxygen species metabolic process; | DELLA; DELLA protein; K14494; | NP_178266.1 GRAS family transcription factor family protein [Arabidopsis thaliana] | 312 | 359 | 216 | 199 |
| AT2G01755 | transcription only | -1.4308458577947547 | -0.02484326373014612 | AT2G01755 | -- | GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast; | -- | NP_001323453.1 hypothetical protein AT2G01755 [Arabidopsis thaliana] | 12 | 4 | 5 | 5 |
| AT2G02750 | transcription only | 1.2208669865688426 | 0.23190119826180475 | AT2G02750 | -- | GO:0003723,RNA binding; GO:0005515,protein binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle; | -- | NP_178378.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana] | 65 | 62 | 56 | 43 |
| AT2G02760 | transcription only | -1.531584538199353 | -0.2832405179577665 | AT2G02760 | -- | GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016567,protein ubiquitination; GO:0016574,histone ubiquitination; GO:0016740,transferase activity; GO:0033523,histone H2B ubiquitination; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0061631,ubiquitin conjugating enzyme activity; | UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]; K10573; | NP_001288862.1 ubiquitin-conjugating enzyme E2 2 [Brassica rapa] | 312 | 292 | 231 | 107 |
| AT2G04039 | transcription only | 2.7168983617249616 | 0.06910197530110442 | AT2G04039 | -- | GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009579,thylakoid; | -- | NP_565308.1 DUF2996 family protein [Arabidopsis thaliana] | 8 | 14 | 11 | 5 |
| AT2G04410 | transcription only | -1.1477327339818668 | 0.563247289515277 | AT2G04410 | -- | GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0009506,plasmodesma; | -- | NP_178522.2 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana] | 87 | 104 | 88 | 97 |
| AT2G16660 | transcription only | -1.8910369998568943 | 0.8597735946105566 | AT2G16660 | -- | GO:0016020,membrane; | -- | NP_179257.1 Major facilitator superfamily protein [Arabidopsis thaliana] | 564 | 469 | 715 | 527 |
| AT2G17300 | transcription only | -2.325542542561465 | 0.29856333108970884 | AT2G17300 | -- | -- | -- | NP_179322.1 hypothetical protein AT2G17300 [Arabidopsis thaliana] | 88 | 68 | 74 | 53 |
| AT2G17695 | transcription only | 6.229215156618648 | -0.1990758715274133 | AT2G17695 | -- | GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; | -- | NP_001118341.1 outer envelope protein [Arabidopsis thaliana] | 30 | 45 | 25 | 19 |
| AT2G17880 | transcription only | 1.087151320355102 | -0.6637517032319963 | AT2G17880 | -- | GO:0009507,chloroplast; | -- | NP_179378.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana] | 467 | 412 | 211 | 157 |
| AT2G18670 | transcription only | 1.0248306182376512 | 0.5770125406461035 | AT2G18670 | -- | GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia; | -- | NP_179457.1 RING/U-box superfamily protein [Arabidopsis thaliana] | 7 | 14 | 16 | 6 |
| AT2G18960 | transcription only | -1.2777894354969124 | 0.08422128883561918 | AT2G18960 | -- | GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0000325,plant-type vacuole; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008553,P-type proton-exporting transporter activity; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009737,response to abscisic acid; GO:0010119,regulation of stomatal movement; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0051453,regulation of intracellular pH; GO:0120029,proton export across plasma membrane; GO:1902600,proton transmembrane transport; GO:1990069,stomatal opening; | PMA1, PMA2; H+-transporting ATPase [EC:7.1.2.1]; K01535; | NP_179486.1 H[+]-ATPase 1 [Arabidopsis thaliana] | 2053 | 1936 | 1608 | 1203 |
| AT2G19180 | transcription only | 1.2913974015238134 | 0.627709737568999 | AT2G19180 | -- | -- | -- | NP_001325144.1 hypothetical protein AT2G19180 [Arabidopsis thaliana] | 21 | 6 | 11 | 15 |
| AT2G19680 | transcription only | 2.1269194430036302 | -0.4681821975720245 | AT2G19680 | -- | GO:0000276,mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); GO:0005739,mitochondrion; GO:0006811,ion transport; GO:0015078,proton transmembrane transporter activity; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045263,proton-transporting ATP synthase complex, coupling factor F(o); GO:1902600,proton transmembrane transport; | ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g; K02140; | NP_001077919.1 Mitochondrial ATP synthase subunit G protein [Arabidopsis thaliana] | 72 | 72 | 38 | 31 |
| AT2G19710 | transcription only | 1.1686865200193892 | 0.4582849982992827 | AT2G19710 | -- | GO:0003674,molecular_function; GO:0008104,protein localization; GO:0015031,protein transport; | -- | NP_179561.2 Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] | 70 | 88 | 91 | 56 |
| AT2G19780 | transcription only | -2.742007393662412 | 0.17810569148928368 | AT2G19780 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; | -- | NP_179568.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana] | 84 | 64 | 55 | 54 |
| AT2G20770 | transcription only | -1.2568838733990269 | 0.1090841793994543 | AT2G20770 | -- | GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0019898,extrinsic component of membrane; GO:0046872,metal ion binding; | -- | NP_850003.1 GCR2-like 2 [Arabidopsis thaliana] | 14 | 8 | 6 | 9 |
| AT2G21340 | transcription only | 2.0479836508053335 | -0.2996291286530539 | AT2G21340 | -- | GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; | -- | NP_565509.4 MATE efflux family protein [Arabidopsis thaliana] | 127 | 115 | 83 | 49 |
| AT2G22330 | transcription only | 1.5221212180369623 | 0.32870058906835 | AT2G22330 | -- | GO:0002229,defense response to oomycetes; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006569,tryptophan catabolic process; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009682,induced systemic resistance; GO:0009684,indoleacetic acid biosynthetic process; GO:0010112,regulation of systemic acquired resistance; GO:0010120,camalexin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019761,glucosinolate biosynthetic process; GO:0020037,heme binding; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0052544,defense response by callose deposition in cell wall; | CYP79B3; tryptophan N-monooxygenase [EC:1.14.14.156]; K11813; | NP_001323954.1 cytochrome P450, family 79, subfamily B, polypeptide 3 [Arabidopsis thaliana] | 22 | 15 | 25 | 7 |
| AT2G22670 | transcription only | -1.8780820795808555 | -0.01493474164791405 | AT2G22670 | -- | GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010311,lateral root formation; GO:0045892,negative regulation of DNA-templated transcription; GO:1901332,negative regulation of lateral root development; | IAA; auxin-responsive protein IAA; K14484; | NP_001077943.1 indoleacetic acid-induced protein 8 [Arabidopsis thaliana] | 1198 | 1175 | 914 | 653 |
| AT2G22870 | transcription only | 2.5396516191852943 | 0.6386177349423579 | AT2G22870 | -- | GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0046872,metal ion binding; | -- | NP_565543.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana] | 29 | 43 | 51 | 26 |
| AT2G23120 | transcription only | 1.834924260048343 | -0.6153958126212721 | AT2G23120 | -- | GO:0005773,vacuole; GO:0005829,cytosol; | -- | NP_565548.1 Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana] | 280 | 274 | 140 | 101 |
| AT2G23290 | transcription only | 1.1169405032601771 | -0.18359892013655993 | AT2G23290 | MYB | GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; | -- | NP_179910.1 myb domain protein 70 [Arabidopsis thaliana] | 46 | 50 | 30 | 26 |
| AT2G23610 | transcription only | 1.3311177579292608 | -0.9852766188576482 | AT2G23610 | -- | GO:0005773,vacuole; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0031408,oxylipin biosynthetic process; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity; | -- | NP_179942.1 methyl esterase 3 [Arabidopsis thaliana] | 19 | 25 | 9 | 6 |
| AT2G24580 | transcription only | -1.4876763625485732 | -0.8380537410383307 | AT2G24580 | -- | GO:0008115,sarcosine oxidase activity; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; | PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7]; K00306; | NP_180034.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana] | 130 | 98 | 36 | 46 |
| AT2G25800 | transcription only | 2.107478668624082 | -0.3576151591635879 | AT2G25800 | -- | GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; | -- | NP_180151.3 elongation factor Ts (DUF810) [Arabidopsis thaliana] | 341 | 304 | 197 | 138 |
| AT2G25880 | transcription only | -1.974489602092827 | -0.01461299910758909 | AT2G25880 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; | -- | NP_001325078.1 ataurora2 [Arabidopsis thaliana] | 29 | 35 | 22 | 20 |
| AT2G26180 | transcription only | -1.1210952589577694 | -0.8585426543836463 | AT2G26180 | -- | GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007105,cytokinesis, site selection; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0016020,membrane; GO:0016604,nuclear body; GO:0016607,nuclear speck; | -- | NP_180187.1 IQ-domain 6 [Arabidopsis thaliana] | 39 | 27 | 14 | 10 |
| AT2G26440 | transcription only | 1.3388619077662371 | -0.31436821466893833 | AT2G26440 | -- | GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0009617,response to bacterium; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; | -- | NP_180212.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana] | 390 | 340 | 238 | 154 |
| AT2G26975 | transcription only | -1.3262467227420172 | -0.7681986165105414 | AT2G26975 | -- | GO:0000325,plant-type vacuole; GO:0005375,copper ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0035434,copper ion transmembrane transport; | SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1; K14686; | NP_850091.1 Ctr copper transporter family [Arabidopsis thaliana] | 51 | 21 | 8 | 18 |
| AT2G28080 | transcription only | -1.4314221920271364 | -0.00932599261875019 | AT2G28080 | -- | GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; | -- | NP_180375.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 121 | 105 | 102 | 50 |
| AT2G28650 | transcription only | -1.033059993636498 | 0.19086672780683064 | AT2G28650 | -- | GO:0000145,exocyst; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0006887,exocytosis; GO:0015031,protein transport; | EXOC7, EXO70; exocyst complex component 7; K07195; | NP_180433.1 exocyst subunit exo70 family protein H8 [Arabidopsis thaliana] | 10 | 6 | 7 | 5 |
| AT2G29180 | transcription only | 1.1191321846130915 | -0.36392767982916013 | AT2G29180 | -- | GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; | -- | NP_180481.1 transmembrane protein [Arabidopsis thaliana] | 18 | 47 | 22 | 13 |
| AT2G29630 | transcription only | -1.233930280169978 | -0.5129101537022701 | AT2G29630 | -- | GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010266,response to vitamin B1; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; | thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]; K03147; | NP_001189634.1 thiaminC [Arabidopsis thaliana] | 1025 | 1051 | 541 | 426 |
| AT2G30770 | transcription only | -2.1525324773494368 | -0.26100698558539615 | AT2G30770 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006952,defense response; GO:0016020,membrane; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016829,lyase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0047720,indoleacetaldoxime dehydratase activity; | CYP71A13; indoleacetaldoxime dehydratase [EC:4.99.1.6]; K11868; | NP_180635.3 cytochrome P450 family 71 polypeptide [Arabidopsis thaliana] | 17 | 14 | 0 | 15 |
| AT2G31410 | transcription only | 1.6789323758877874 | 0.660926353685236 | AT2G31410 | -- | GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; | -- | NP_565723.1 coiled-coil protein [Arabidopsis thaliana] | 72 | 69 | 89 | 60 |
| AT2G31560 | transcription only | 1.8451681375801232 | -0.28093510770730395 | AT2G31560 | -- | -- | -- | NP_001325346.1 signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana] | 87 | 71 | 60 | 28 |
| AT2G31890 | transcription only | 1.6388951238266576 | -0.6479057099908818 | AT2G31890 | -- | GO:0000963,mitochondrial RNA processing; GO:0003723,RNA binding; GO:0005759,mitochondrial matrix; GO:0006364,rRNA processing; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0035770,ribonucleoprotein granule; GO:0042644,chloroplast nucleoid; GO:0042646,plastid nucleoid; GO:0044528,regulation of mitochondrial mRNA stability; GO:1901259,chloroplast rRNA processing; | -- | NP_850176.1 RAP [Arabidopsis thaliana] | 99 | 96 | 43 | 39 |
| AT2G32280 | transcription only | -3.1024412610200116 | 0.14223324840235133 | AT2G32280 | -- | GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009855,determination of bilateral symmetry; GO:0010087,phloem or xylem histogenesis; GO:0010252,auxin homeostasis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0016020,membrane; GO:0048366,leaf development; GO:0048825,cotyledon development; GO:0051302,regulation of cell division; | -- | NP_001323429.1 GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana] | 43 | 25 | 22 | 26 |
| AT2G33845 | transcription only | 1.122385194816114 | 0.17809617974938774 | AT2G33845 | -- | GO:0003729,mRNA binding; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process; | -- | NP_565774.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] | 56 | 92 | 69 | 45 |
| AT2G34420 | transcription only | -1.3531022475004335 | -0.9214443624443652 | AT2G34420 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; | LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912; | NP_565786.1 photosystem II light harvesting complex protein B1B2 [Arabidopsis thaliana] | 2578 | 2523 | 962 | 818 |
| AT2G35370 | transcription only | -1.2542149327518526 | -0.6807869559823556 | AT2G35370 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005960,glycine cleavage complex; GO:0009249,protein lipoylation; GO:0009579,thylakoid; GO:0019464,glycine decarboxylation via glycine cleavage system; | gcvH, GCSH; glycine cleavage system H protein; K02437; | NP_181080.1 glycine decarboxylase complex H [Arabidopsis thaliana] | 325 | 340 | 166 | 112 |
| AT2G35820 | transcription only | -1.798919183206186 | 0.13576041205322598 | AT2G35820 | -- | GO:0004848,ureidoglycolate hydrolase activity; GO:0005829,cytosol; GO:0016787,hydrolase activity; | -- | NP_001325071.1 ureidoglycolate hydrolase [Arabidopsis thaliana] | 50 | 33 | 24 | 34 |
| AT2G37230 | transcription only | -2.287774225446055 | 0.2886184102866584 | AT2G37230 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009409,response to cold; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; | -- | NP_181260.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] | 421 | 352 | 321 | 297 |
| AT2G37975 | transcription only | 1.4310367007368776 | 0.7202254096185344 | AT2G37975 | -- | GO:0000139,Golgi membrane; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0030134,COPII-coated ER to Golgi transport vesicle; | -- | NP_001318371.1 Yos1-like protein [Arabidopsis thaliana] | 18 | 20 | 25 | 17 |
| AT2G38480 | transcription only | 1.4236292313621266 | 0.4179540419840851 | AT2G38480 | -- | GO:0005886,plasma membrane; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding; | -- | NP_565891.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana] | 29 | 53 | 36 | 37 |
| AT2G39435 | transcription only | 1.3230846562599523 | 0.5436897788831946 | AT2G39435 | -- | -- | -- | NP_001189712.1 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana] | 7 | 10 | 6 | 10 |
| AT2G39800 | transcription only | 1.717083027396109 | 0.41826325954517735 | AT2G39800 | -- | GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004349,glutamate 5-kinase activity; GO:0004350,glutamate-5-semialdehyde dehydrogenase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006561,proline biosynthetic process; GO:0006979,response to oxidative stress; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009084,glutamine family amino acid biosynthetic process; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009555,pollen development; GO:0009651,response to salt stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0016740,transferase activity; GO:0017084,delta1-pyrroline-5-carboxylate synthetase activity; GO:0042538,hyperosmotic salinity response; GO:0048364,root development; GO:0055129,L-proline biosynthetic process; | ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase [EC:2.7.2.11 1.2.1.41]; K12657; | NP_001189715.1 delta1-pyrroline-5-carboxylate synthase 1 [Arabidopsis thaliana] | 1289 | 1225 | 1216 | 1005 |
| AT2G40200 | transcription only | 1.045461832317456 | 0.1404202618538187 | AT2G40200 | bHLH | GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity; | -- | NP_181549.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana] | 16 | 5 | 9 | 6 |
| AT2G40770 | transcription only | 1.0757652360628098 | -0.9910142910702768 | AT2G40770 | -- | GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006338,chromatin remodeling; GO:0008150,biological_process; GO:0046872,metal ion binding; GO:0140658,ATP-dependent chromatin remodeler activity; | -- | NP_001318395.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana] | 84 | 60 | 29 | 19 |
| AT2G41680 | transcription only | 1.0001662800123796 | -0.20528835504948495 | AT2G41680 | -- | GO:0004791,thioredoxin-disulfide reductase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0010581,regulation of starch biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0019430,removal of superoxide radicals; GO:0042744,hydrogen peroxide catabolic process; GO:0042802,identical protein binding; GO:0043085,positive regulation of catalytic activity; GO:0045454,cell redox homeostasis; | trxB, TRR; thioredoxin reductase (NADPH) [EC:1.8.1.9]; K00384; | CAD5321071.1 unnamed protein product [Arabidopsis thaliana] | 178 | 155 | 118 | 75 |
| AT2G42690 | transcription only | 1.0624724851127332 | -0.475824961742297 | AT2G42690 | -- | GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0009650,UV protection; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0071493,cellular response to UV-B; | -- | NP_181797.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 285 | 217 | 146 | 94 |
| AT2G42900 | transcription only | -1.056968582007704 | -0.2875499906512427 | AT2G42900 | -- | GO:0005575,cellular_component; | -- | NP_181818.1 Plant basic secretory protein (BSP) family protein [Arabidopsis thaliana] | 43 | 49 | 16 | 32 |
| AT2G42980 | transcription only | -1.1037288324384085 | 0.04559338611815668 | AT2G42980 | -- | GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; | -- | NP_181826.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana] | 19 | 12 | 12 | 9 |
| AT2G44730 | transcription only | -1.0542587842010498 | -0.20070707813928812 | AT2G44730 | Trihelix | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0019760,glucosinolate metabolic process; | -- | NP_182001.1 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Arabidopsis thaliana] | 121 | 98 | 72 | 54 |
| AT2G46210 | transcription only | -1.1660420350160825 | 0.07976232689231817 | AT2G46210 | -- | GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016717,oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; GO:0030148,sphingolipid biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0046872,metal ion binding; GO:0052631,sphingolipid delta-8 desaturase activity; GO:0070417,cellular response to cold; | SLD; sphingolipid 8-(E/Z)-desaturase [EC:1.14.19.29]; K21734; | NP_182144.1 Fatty acid/sphingolipid desaturase [Arabidopsis thaliana] | 20 | 23 | 5 | 23 |
| AT2G46225 | transcription only | 1.648166879886123 | -0.00587371961872678 | AT2G46225 | -- | GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0010090,trichome morphogenesis; GO:0031209,SCAR complex; GO:0045010,actin nucleation; GO:0110165,cellular anatomical entity; | -- | NP_001189756.1 ABI-1-like 1 [Arabidopsis thaliana] | 98 | 126 | 82 | 67 |
| AT2G46520 | transcription only | -2.7222183753438833 | 0.20929464418116384 | AT2G46520 | -- | GO:0005049,nuclear export signal receptor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006611,protein export from nucleus; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0031267,small GTPase binding; | CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter); K18423; | NP_182175.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter [Arabidopsis thaliana] | 423 | 403 | 303 | 320 |
| AT2G46590 | transcription only | -1.0856025948087764 | 0.1255892385121926 | AT2G46590 | Dof | GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009845,seed germination; GO:0010030,positive regulation of seed germination; GO:0010161,red light signaling pathway; GO:0010372,positive regulation of gibberellin biosynthetic process; GO:0046872,metal ion binding; GO:0071462,cellular response to water stimulus; GO:0071491,cellular response to red light; | -- | NP_182182.2 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana] | 51 | 51 | 42 | 32 |
| AT2G46810 | transcription only | 1.364142081654353 | 0.9773450780931946 | AT2G46810 | bHLH | GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009631,cold acclimation; GO:0042803,protein homodimerization activity; GO:0046983,protein dimerization activity; | -- | NP_182204.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana] | 13 | 8 | 20 | 8 |
| AT2G47180 | transcription only | 1.0802951985185545 | 0.5583353422362913 | AT2G47180 | -- | GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0006012,galactose metabolic process; GO:0006950,response to stress; GO:0006979,response to oxidative stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046872,metal ion binding; GO:0047216,inositol 3-alpha-galactosyltransferase activity; | GOLS; inositol 3-alpha-galactosyltransferase [EC:2.4.1.123]; K18819; | NP_182240.1 galactinol synthase 1 [Arabidopsis thaliana] | 36 | 57 | 61 | 33 |
| AT2G47210 | transcription only | 1.2478174147758438 | 0.20474013347169 | AT2G47210 | MYB_related | GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000812,Swr1 complex; GO:0003677,DNA binding; GO:0003714,transcription corepressor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0035267,NuA4 histone acetyltransferase complex; GO:0043967,histone H4 acetylation; GO:0043968,histone H2A acetylation; GO:0045892,negative regulation of DNA-templated transcription; | -- | NP_001323962.1 myb-like transcription factor family protein [Arabidopsis thaliana] | 138 | 131 | 123 | 84 |
| AT2G47980 | transcription only | 1.7829088595122926 | -0.03509571883747015 | AT2G47980 | -- | GO:0000278,mitotic cell cycle; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0007049,cell cycle; GO:0007059,chromosome segregation; GO:0007062,sister chromatid cohesion; GO:0008278,cohesin complex; GO:0051301,cell division; GO:0051455,monopolar spindle attachment to meiosis I kinetochore; GO:0051754,meiotic sister chromatid cohesion, centromeric; | STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2; K06671; | NP_566119.1 sister-chromatid cohesion protein 3 [Arabidopsis thaliana] | 401 | 360 | 304 | 193 |
| AT3G01050 | transcription only | 1.0894155572158295 | -0.15312663769086535 | AT3G01050 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane; | -- | NP_001319438.1 membrane-anchored ubiquitin-fold protein 1 precursor [Arabidopsis thaliana] | 18 | 9 | 10 | 6 |
| AT3G01500 | transcription only | -1.2246908622023358 | -0.07261320366742789 | AT3G01500 | -- | GO:0003729,mRNA binding; GO:0004089,carbonate dehydratase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010037,response to carbon dioxide; GO:0010119,regulation of stomatal movement; GO:0010319,stromule; GO:0015976,carbon utilization; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016829,lyase activity; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:2000122,negative regulation of stomatal complex development; | cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673; | NP_186799.2 carbonic anhydrase 1 [Arabidopsis thaliana] | 2216 | 2082 | 1401 | 1284 |
| AT3G02170 | transcription only | -1.3840201172909383 | 0.13788178680647234 | AT3G02170 | -- | GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0008017,microtubule binding; GO:0009826,unidimensional cell growth; GO:0051513,regulation of monopolar cell growth; | -- | NP_566165.2 longifolia2 [Arabidopsis thaliana] | 298 | 280 | 223 | 196 |
| AT3G02200 | transcription only | 1.25975541915876 | 0.5447382815713361 | AT3G02200 | -- | GO:0000502,proteasome complex; GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m; | -- | NP_001319448.1 Proteasome component (PCI) domain protein [Arabidopsis thaliana] | 371 | 312 | 389 | 273 |
| AT3G02560 | transcription only | -1.1113137327781637 | 0.7276869212508762 | AT3G02560 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0009507,chloroplast; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0032040,small-subunit processome; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex; | RP-S7e, RPS7; small subunit ribosomal protein S7e; K02993; | NP_001319452.1 Ribosomal protein S7e family protein [Arabidopsis thaliana] | 480 | 487 | 582 | 479 |
| AT3G02570 | transcription only | 1.4681286636408004 | -0.2116963978963864 | AT3G02570 | -- | GO:0004476,mannose-6-phosphate isomerase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008270,zinc ion binding; GO:0009298,GDP-mannose biosynthetic process; GO:0009416,response to light stimulus; GO:0009793,embryo development ending in seed dormancy; GO:0010043,response to zinc ion; GO:0016853,isomerase activity; GO:0032025,response to cobalt ion; GO:0033591,response to L-ascorbic acid; GO:0046686,response to cadmium ion; GO:0046872,metal ion binding; | manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8]; K01809; | NP_186906.1 Mannose-6-phosphate isomerase, type I [Arabidopsis thaliana] | 175 | 131 | 98 | 76 |
| AT3G02780 | transcription only | 1.0215167962009557 | 0.29918758847909244 | AT3G02780 | -- | GO:0004452,isopentenyl-diphosphate delta-isomerase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009240,isopentenyl diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009908,flower development; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016853,isomerase activity; GO:0046872,metal ion binding; GO:0050992,dimethylallyl diphosphate biosynthetic process; | idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]; K01823; | NP_186927.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 [Arabidopsis thaliana] | 347 | 331 | 340 | 219 |
| AT3G03910 | transcription only | 2.3553122391271653 | -0.2579013764237635 | AT3G03910 | -- | GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0051171,regulation of nitrogen compound metabolic process; | GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261; | NP_187041.1 glutamate dehydrogenase 3 [Arabidopsis thaliana] | 59 | 70 | 51 | 23 |
| AT3G04010 | transcription only | -1.3313344664261422 | 0.1089822074266233 | AT3G04010 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; | -- | NP_187051.3 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] | 36 | 19 | 34 | 7 |
| AT3G05010 | transcription only | 1.195511265560934 | -0.3921357815899309 | AT3G05010 | -- | GO:0002237,response to molecule of bacterial origin; GO:0004930,G protein-coupled receptor activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0008502,melatonin receptor activity; GO:0010015,root morphogenesis; GO:0016020,membrane; GO:0019236,response to pheromone; GO:0090333,regulation of stomatal closure; GO:1904408,melatonin binding; | -- | NP_566244.1 Protein of unknown function, transmembrane-40 [Arabidopsis thaliana] | 81 | 56 | 41 | 28 |
| AT3G05060 | transcription only | 1.2966811477547082 | 0.8862728226327825 | AT3G05060 | -- | GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; | NOP58; nucleolar protein 58; K14565; | NP_187157.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana] | 479 | 470 | 672 | 496 |
| AT3G05330 | transcription only | -1.1566710816742316 | 0.4467960019231019 | AT3G05330 | -- | GO:0000911,cytokinesis by cell plate formation; GO:0000914,phragmoplast assembly; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:2000694,regulation of phragmoplast microtubule organization; | -- | NP_187184.2 cyclin family [Arabidopsis thaliana] | 20 | 25 | 23 | 18 |
| AT3G05750 | transcription only | -1.9435440786844 | 0.4135357239812253 | AT3G05750 | -- | GO:0000132,establishment of mitotic spindle orientation; GO:0000913,preprophase band assembly; GO:0009574,preprophase band; | -- | NP_187226.2 serine-rich adhesin for platelets-like protein [Arabidopsis thaliana] | 48 | 37 | 44 | 31 |
| AT3G05820 | transcription only | 1.5165380980874432 | -0.1641325633330904 | AT3G05820 | -- | GO:0004564,beta-fructofuranosidase activity; GO:0004575,sucrose alpha-glucosidase activity; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005987,sucrose catabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033926,glycopeptide alpha-N-acetylgalactosaminidase activity; | -- | NP_001326532.1 invertase H [Arabidopsis thaliana] | 49 | 36 | 34 | 17 |
| AT3G05900 | transcription only | 1.3821650650211346 | 0.01423779068559611 | AT3G05900 | -- | GO:0003674,molecular_function; GO:0005829,cytosol; | -- | NP_187241.2 neurofilament protein-like protein [Arabidopsis thaliana] | 557 | 542 | 431 | 309 |
| AT3G05930 | transcription only | -1.182180864144902 | -0.5833368782142387 | AT3G05930 | -- | GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development; | -- | NP_187244.1 germin-like protein 8 [Arabidopsis thaliana] | 216 | 142 | 90 | 67 |
| AT3G06780 | transcription only | 1.267436366267749 | -0.10160811620809942 | AT3G06780 | -- | GO:0003674,molecular_function; GO:0005575,cellular_component; | -- | NP_566293.1 glycine-rich protein [Arabidopsis thaliana] | 72 | 70 | 61 | 29 |
| AT3G07350 | transcription only | 1.2325178910534664 | -0.20377654430108724 | AT3G07350 | -- | GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0071456,cellular response to hypoxia; | -- | NP_566303.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506) [Arabidopsis thaliana] | 10 | 11 | 6 | 6 |
| AT3G08660 | transcription only | -1.4552722003764234 | 0.06608408392979218 | AT3G08660 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination; | -- | NP_001327872.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] | 7 | 10 | 7 | 5 |
| AT3G08940 | transcription only | -1.3496864838185505 | -0.3822920972690037 | AT3G08940 | -- | GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; | LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915; | NP_187506.1 light harvesting complex photosystem II [Arabidopsis thaliana] | 1206 | 1290 | 650 | 612 |
| AT3G09790 | transcription only | -1.6019848295430288 | -0.333924431739967 | AT3G09790 | -- | GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009505,plant-type cell wall; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding; | UBC; ubiquitin C; K08770; | NP_001319513.1 ubiquitin 8 [Arabidopsis thaliana] | 14 | 7 | 7 | 4 |
| AT3G10060 | transcription only | -1.4073818727486622 | -0.4073219140982096 | AT3G10060 | -- | GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity; | -- | NP_187617.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] | 103 | 118 | 67 | 45 |
| AT3G10070 | transcription only | -1.2821692032753955 | 0.17951195788429303 | AT3G10070 | -- | GO:0000124,SAGA complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0017025,TBP-class protein binding; GO:0046695,SLIK (SAGA-like) complex; GO:0046982,protein heterodimerization activity; GO:0051123,RNA polymerase II preinitiation complex assembly; | TAF12; transcription initiation factor TFIID subunit 12; K03126; | NP_566367.1 TBP-associated factor 12 [Arabidopsis thaliana] | 22 | 27 | 15 | 21 |
| AT3G10130 | transcription only | 1.7015471234334587 | -0.5105518787902146 | AT3G10130 | -- | GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0020037,heme binding; GO:0110165,cellular anatomical entity; | -- | NP_187624.1 SOUL heme-binding family protein [Arabidopsis thaliana] | 55 | 44 | 21 | 24 |
| AT3G10180 | transcription only | -2.599271752913218 | 0.05284204666188628 | AT3G10180 | -- | GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0016787,hydrolase activity; | -- | NP_187629.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana] | 62 | 39 | 46 | 24 |
| AT3G10720 | transcription only | 2.2660249517753086 | -0.3063860719035129 | AT3G10720 | -- | GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; | E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051; | NP_187683.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana] | 187 | 171 | 98 | 92 |
| AT3G11110 | transcription only | -1.9956732371713488 | -0.9010067135190264 | AT3G11110 | -- | GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; | -- | NP_187722.1 RING/U-box superfamily protein [Arabidopsis thaliana] | 8 | 10 | 1 | 5 |
| AT3G11470 | transcription only | 1.453503871169665 | 0.05181112208227043 | AT3G11470 | -- | GO:0000287,magnesium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008897,holo-[acyl-carrier-protein] synthase activity; GO:0016740,transferase activity; GO:0018215,protein phosphopantetheinylation; GO:0019878,lysine biosynthetic process via aminoadipic acid; | LYS5, acpT; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]; K06133; | NP_187754.2 4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana] | 24 | 22 | 20 | 12 |
| AT3G11810 | transcription only | -4.19184542141857 | 0.24866266365872688 | AT3G11810 | -- | GO:0016020,membrane; | -- | NP_187787.1 transmembrane protein [Arabidopsis thaliana] | 59 | 25 | 33 | 31 |
| AT3G12400 | transcription only | 1.284675557892146 | -0.1277603621859425 | AT3G12400 | -- | GO:0000813,ESCRT I complex; GO:0005515,protein binding; GO:0005768,endosome; GO:0005769,early endosome; GO:0005770,late endosome; GO:0008333,endosome to lysosome transport; GO:0010091,trichome branching; GO:0015031,protein transport; GO:0032991,protein-containing complex; GO:0036211,protein modification process; GO:0043130,ubiquitin binding; GO:0051301,cell division; GO:0110165,cellular anatomical entity; | TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101; K12183; | NP_001327160.1 Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana] | 113 | 105 | 73 | 59 |
| AT3G12480 | transcription only | 1.4619764629149528 | 0.679783960515637 | AT3G12480 | NF-YC | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; | -- | NP_187854.2 nuclear factor Y, subunit C11 [Arabidopsis thaliana] | 46 | 42 | 61 | 34 |
| AT3G12780 | transcription only | -1.5111906684646204 | -0.22701834952610864 | AT3G12780 | -- | GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004618,phosphoglycerate kinase activity; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010319,stromule; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019375,galactolipid biosynthetic process; GO:0043531,ADP binding; GO:0048046,apoplast; | PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3]; K00927; | NP_187884.1 phosphoglycerate kinase 1 [Arabidopsis thaliana] | 1991 | 1899 | 1239 | 966 |
| AT3G13060 | transcription only | 1.4053610843119513 | -0.34108280683417286 | AT3G13060 | -- | GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization; | -- | NP_001327857.1 evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana] | 149 | 136 | 78 | 70 |
| AT3G13230 | transcription only | 1.5086598207261002 | 0.9110193177715976 | AT3G13230 | -- | GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0008150,biological_process; | -- | NP_001326485.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana] | 123 | 135 | 176 | 146 |
| AT3G13440 | transcription only | -1.4624773008267562 | 0.6031111529719531 | AT3G13440 | -- | GO:0003676,nucleic acid binding; GO:0005829,cytosol; GO:0006415,translational termination; GO:0006479,protein methylation; GO:0006807,nitrogen compound metabolic process; GO:0008168,methyltransferase activity; GO:0008276,protein methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0035657,eRF1 methyltransferase complex; GO:0043414,macromolecule methylation; GO:0044238,primary metabolic process; GO:0055072,iron ion homeostasis; | -- | NP_001327233.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 13 | 15 | 14 | 14 |
| AT3G14440 | transcription only | -1.6886620975323885 | -0.7677151159831366 | AT3G14440 | -- | GO:0006970,response to osmotic stress; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009688,abscisic acid biosynthetic process; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0042538,hyperosmotic salinity response; GO:0045549,9-cis-epoxycarotenoid dioxygenase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; | NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840; | NP_188062.1 nine-cis-epoxycarotenoid dioxygenase 3 [Arabidopsis thaliana] | 28 | 26 | 6 | 14 |
| AT3G15040 | transcription only | -3.7605898342348345 | 0.1076141333047082 | AT3G15040 | -- | GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0010150,leaf senescence; | -- | KAG7625290.1 Senescence regulator S40 [Arabidopsis thaliana x Arabidopsis arenosa] | 130 | 95 | 103 | 59 |
| AT3G15070 | transcription only | 1.2090535794251631 | -0.158849795751625 | AT3G15070 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0060776,simple leaf morphogenesis; GO:0061630,ubiquitin protein ligase activity; | -- | NP_001189897.1 RING/U-box superfamily protein [Arabidopsis thaliana] | 45 | 33 | 26 | 20 |
| AT3G15260 | transcription only | -2.666258451042992 | 0.04431166212654148 | AT3G15260 | -- | GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding; | -- | NP_188144.1 Protein phosphatase 2C family protein [Arabidopsis thaliana] | 36 | 56 | 47 | 19 |
| AT3G15730 | transcription only | -1.592246162011363 | -0.6422945147921082 | AT3G15730 | -- | GO:0003824,catalytic activity; GO:0004620,phospholipase activity; GO:0004630,phospholipase D activity; GO:0005096,GTPase activator activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0009395,phospholipid catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0009873,ethylene-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0010358,leaf shaping; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0031966,mitochondrial membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0050790,regulation of catalytic activity; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity; | PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115; | NP_188194.1 phospholipase D alpha 1 [Arabidopsis thaliana] | 6134 | 5167 | 2395 | 2326 |
| AT3G16250 | transcription only | -1.332337041721805 | 0.6792179277033139 | AT3G16250 | -- | GO:0005829,cytosol; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0140647,P450-containing electron transport chain; | -- | NP_188246.1 NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] | 84 | 89 | 102 | 82 |
| AT3G16510 | transcription only | 1.6126389651090978 | 0.5856174519795029 | AT3G16510 | -- | GO:0006952,defense response; | -- | NP_188272.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana] | 9 | 11 | 11 | 9 |
| AT3G17030 | transcription only | -2.406996900389733 | 0.2902065286024554 | AT3G17030 | -- | GO:0003674,molecular_function; | -- | NP_188328.5 Nucleic acid-binding proteins superfamily [Arabidopsis thaliana] | 13 | 12 | 10 | 10 |
| AT3G17640 | transcription only | -1.5968149057212309 | -0.281054229387492 | AT3G17640 | -- | GO:0005515,protein binding; | -- | NP_188391.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana] | 18 | 20 | 18 | 4 |
| AT3G17800 | transcription only | -1.394105752761324 | -0.6873454442599853 | AT3G17800 | -- | GO:0009507,chloroplast; GO:0009536,plastid; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B; | -- | NP_566588.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana] | 528 | 516 | 234 | 195 |
| AT3G18035 | transcription only | 1.2787364072058125 | 0.19423919078272692 | AT3G18035 | -- | GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination; | -- | NP_188431.3 winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana] | 593 | 537 | 511 | 351 |
| AT3G18750 | transcription only | 1.9068583298541495 | -0.4720823866792128 | AT3G18750 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity; | -- | NP_001189928.1 with no lysine (K) kinase 6 [Arabidopsis thaliana] | 37 | 33 | 11 | 21 |
| AT3G18950 | transcription only | -1.7165095983165313 | -0.6990154618611358 | AT3G18950 | -- | GO:0005515,protein binding; | -- | NP_188525.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana] | 7 | 12 | 5 | 3 |
| AT3G19040 | transcription only | -1.907752771567932 | 0.4672938065935271 | AT3G19040 | -- | GO:0001091,RNA polymerase II general transcription initiation factor binding; GO:0004402,histone acetyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006325,chromatin organization; GO:0006366,transcription by RNA polymerase II; GO:0009416,response to light stimulus; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0016570,histone modification; GO:0016573,histone acetylation; GO:0017025,TBP-class protein binding; GO:0051123,RNA polymerase II preinitiation complex assembly; | TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]; K03125; | NP_001327580.1 histone acetyltransferase of the TAFII250 family 2 [Arabidopsis thaliana] | 86 | 60 | 66 | 65 |
| AT3G19240 | transcription only | 1.1525308470770808 | 0.16664171248120882 | AT3G19240 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; | -- | NP_188555.1 Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana] | 140 | 118 | 111 | 81 |
| AT3G20300 | transcription only | -4.51106860590543 | 0.5172388519758608 | AT3G20300 | -- | GO:0003674,molecular_function; GO:0016020,membrane; | -- | NP_566658.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana] | 29 | 19 | 25 | 20 |
| AT3G21360 | transcription only | -2.150732587190885 | -0.02278970594060111 | AT3G21360 | -- | GO:0005634,nucleus; GO:0005829,cytosol; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; | -- | NP_188773.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana] | 30 | 40 | 25 | 21 |
| AT3G21750 | transcription only | -1.0776159250730937 | -0.13701869421484106 | AT3G21750 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity; | -- | NP_188812.1 UDP-glucosyl transferase 71B1 [Arabidopsis thaliana] | 303 | 344 | 218 | 174 |
| AT3G21790 | transcription only | -1.4068030711922486 | 0.18820120938223475 | AT3G21790 | -- | GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; | -- | BAB02841.1 UTP-glucose glucosyltransferase [Arabidopsis thaliana] | 43 | 42 | 40 | 25 |
| AT3G23490 | transcription only | -3.177408972839813 | 0.1934861207851986 | AT3G23490 | -- | GO:0003677,DNA binding; GO:0005829,cytosol; GO:0008824,cyanate hydratase activity; GO:0009439,cyanate metabolic process; GO:0009440,cyanate catabolic process; GO:0009651,response to salt stress; GO:0016020,membrane; GO:0016829,lyase activity; GO:0042802,identical protein binding; | cynS; cyanate lyase [EC:4.2.1.104]; K01725; | NP_001327887.1 cyanase [Arabidopsis thaliana] | 107 | 133 | 126 | 62 |
| AT3G23540 | transcription only | -1.229430133270655 | -0.14785990178169106 | AT3G23540 | -- | GO:0003674,molecular_function; | -- | NP_001327699.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 71 | 68 | 51 | 33 |
| AT3G24730 | transcription only | -1.5367575995512854 | 0.704057608510932 | AT3G24730 | -- | GO:0000398,mRNA splicing, via spliceosome; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006376,mRNA splice site selection; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex; | -- | NP_189117.2 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana] | 18 | 7 | 13 | 13 |
| AT3G25520 | transcription only | 1.182926805684828 | 0.33650782459045536 | AT3G25520 | -- | GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0006913,nucleocytoplasmic transport; GO:0008097,5S rRNA binding; GO:0009507,chloroplast; GO:0009955,adaxial/abaxial pattern specification; GO:0009965,leaf morphogenesis; GO:0010015,root morphogenesis; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:0051301,cell division; GO:1990904,ribonucleoprotein complex; | RP-L5e, RPL5; large subunit ribosomal protein L5e; K02932; | NP_001327862.1 ribosomal protein L5 [Arabidopsis thaliana] | 2163 | 1929 | 1858 | 1549 |
| AT3G25590 | transcription only | 1.2070443464705984 | -0.06052960819639162 | AT3G25590 | -- | GO:0003674,molecular_function; | -- | NP_189187.2 micronuclear linker histone polyprotein-like protein [Arabidopsis thaliana] | 12 | 38 | 19 | 14 |
| AT3G26570 | transcription only | 1.1443114307098268 | 0.03095326108967394 | AT3G26570 | -- | GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0005829,cytosol; GO:0006817,phosphate ion transport; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009673,low-affinity phosphate transmembrane transporter activity; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0015293,symporter activity; GO:0016020,membrane; GO:0035435,phosphate ion transmembrane transport; GO:0055085,transmembrane transport; | -- | NP_189289.2 phosphate transporter 2;1 [Arabidopsis thaliana] | 622 | 397 | 359 | 318 |
| AT3G27180 | transcription only | 1.8897940746231956 | 0.8397353424560519 | AT3G27180 | -- | GO:0001510,RNA methylation; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; | -- | NP_189354.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 58 | 71 | 70 | 81 |
| AT3G27230 | transcription only | 1.1985971348596072 | -0.7271671836510373 | AT3G27230 | -- | GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0032259,methylation; | -- | NP_566813.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 150 | 124 | 54 | 54 |
| AT3G27350 | transcription only | 1.581697883452136 | 0.3172690099118146 | AT3G27350 | -- | -- | -- | NP_001189988.1 transcriptional regulator ATRX-like protein [Arabidopsis thaliana] | 78 | 48 | 59 | 44 |
| AT3G27700 | transcription only | -1.0424289361094237 | 0.34374626543072767 | AT3G27700 | -- | GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0046872,metal ion binding; | -- | NP_189407.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] | 74 | 48 | 39 | 59 |
| AT3G28180 | transcription only | -1.0020639025670224 | -0.4670784128051725 | AT3G28180 | -- | GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042803,protein homodimerization activity; GO:0048868,pollen tube development; GO:0071555,cell wall organization; GO:0099402,plant organ development; | -- | NP_566835.1 Cellulose-synthase-like C4 [Arabidopsis thaliana] | 232 | 161 | 128 | 63 |
| AT3G28900 | transcription only | 7.53458528602676 | 0.3339837761989158 | AT3G28900 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042254,ribosome biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; | RP-L34e, RPL34; large subunit ribosomal protein L34e; K02915; | NP_189532.1 Ribosomal protein L34e superfamily protein [Arabidopsis thaliana] | 290 | 263 | 277 | 188 |
| AT3G28930 | transcription only | -1.6445976645454348 | 0.32251863225826327 | AT3G28930 | -- | GO:0005829,cytosol; GO:0009617,response to bacterium; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; | -- | NP_001326184.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana] | 57 | 31 | 52 | 22 |
| AT3G43270 | transcription only | 1.260208819931186 | -0.01851469302943144 | AT3G43270 | -- | GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; | E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051; | NP_189913.3 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana] | 1050 | 941 | 684 | 608 |
| AT3G44110 | transcription only | -1.0950558312959464 | -0.2597222618205494 | AT3G44110 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009911,positive regulation of flower development; GO:0016020,membrane; GO:0030544,Hsp70 protein binding; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0043462,regulation of ATP-dependent activity; GO:0046872,metal ion binding; GO:0048573,photoperiodism, flowering; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding; | DNAJA2; DnaJ homolog subfamily A member 2; K09503; | NP_189997.1 DNAJ homologue 3 [Arabidopsis thaliana] | 1204 | 1025 | 560 | 642 |
| AT3G45140 | transcription only | -1.2246857583557869 | 0.32829079339063444 | AT3G45140 | -- | GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0009695,jasmonic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0009941,chloroplast envelope; GO:0010597,green leaf volatile biosynthetic process; GO:0016165,linoleate 13S-lipoxygenase activity; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0031408,oxylipin biosynthetic process; GO:0034440,lipid oxidation; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0080027,response to herbivore; GO:1901149,salicylic acid binding; | LOX2S; lipoxygenase [EC:1.13.11.12]; K00454; | NP_566875.1 lipoxygenase 2 [Arabidopsis thaliana] | 7418 | 7766 | 7296 | 5431 |
| AT3G45290 | transcription only | -1.2582462022857337 | -0.4217024508950859 | AT3G45290 | -- | GO:0005516,calmodulin binding; GO:0006952,defense response; GO:0009607,response to biotic stimulus; GO:0016020,membrane; GO:0016021,integral component of membrane; | -- | NP_566879.1 Seven transmembrane MLO family protein [Arabidopsis thaliana] | 44 | 39 | 23 | 18 |
| AT3G46550 | transcription only | -1.0927246807314317 | -0.0094322935311633 | AT3G46550 | -- | GO:0005886,plasma membrane; GO:0007155,cell adhesion; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009897,external side of plasma membrane; GO:0010192,mucilage biosynthetic process; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0048354,mucilage biosynthetic process involved in seed coat development; | -- | NP_190239.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana] | 231 | 141 | 158 | 88 |
| AT3G46600 | transcription only | -1.3938600931790708 | -0.4666481566190958 | AT3G46600 | GRAS | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding; | -- | NP_001319695.1 GRAS family transcription factor [Arabidopsis thaliana] | 60 | 61 | 26 | 31 |
| AT3G46610 | transcription only | 1.785650788919006 | 0.5320456645405137 | AT3G46610 | -- | GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006413,translational initiation; GO:0008494,translation activator activity; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0032544,plastid translation; GO:0043022,ribosome binding; GO:0045727,positive regulation of translation; | -- | NP_001319696.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana] | 40 | 21 | 35 | 23 |
| AT3G46620 | transcription only | -1.8822305166924869 | 0.3627422695504858 | AT3G46620 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051865,protein autoubiquitination; GO:0061630,ubiquitin protein ligase activity; | -- | NP_190246.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] | 109 | 80 | 85 | 74 |
| AT3G46640 | transcription only | -1.9816116929361136 | 0.22850373258601508 | AT3G46640 | G2-like | GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0010468,regulation of gene expression; GO:0042752,regulation of circadian rhythm; GO:0042753,positive regulation of circadian rhythm; GO:0048511,rhythmic process; | -- | NP_001030823.1 Homeodomain-like superfamily protein [Arabidopsis thaliana] | 160 | 147 | 127 | 110 |
| AT3G47060 | transcription only | -1.037610987138367 | -0.17121984125028397 | AT3G47060 | -- | GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; | -- | NP_566889.1 FTSH protease 7 [Arabidopsis thaliana] | 76 | 93 | 60 | 41 |
| AT3G47590 | transcription only | -1.838498929744832 | -0.13695437008542305 | AT3G47590 | -- | GO:0003674,molecular_function; GO:0005829,cytosol; GO:0008150,biological_process; | K06889; uncharacterized protein; K06889; | NP_190343.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 82 | 111 | 57 | 59 |
| AT3G48330 | transcription only | 1.2494668211517732 | -0.00465413316245096 | AT3G48330 | -- | GO:0004719,protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; GO:0005737,cytoplasm; GO:0006479,protein methylation; GO:0007568,aging; GO:0008168,methyltransferase activity; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009845,seed germination; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0030091,protein repair; GO:0032259,methylation; GO:0036211,protein modification process; | E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]; K00573; | NP_680112.2 protein-l-isoaspartate methyltransferase 1 [Arabidopsis thaliana] | 125 | 98 | 74 | 71 |
| AT3G49601 | transcription only | -1.116996274698065 | 0.0745003496130793 | AT3G49601 | -- | GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0008150,biological_process; | -- | NP_001118799.1 pre-mRNA-splicing factor [Arabidopsis thaliana] | 266 | 257 | 182 | 179 |
| AT3G49940 | transcription only | 2.2230343019608103 | 0.17329550409796624 | AT3G49940 | LBD | GO:0005515,protein binding; GO:0010468,regulation of gene expression; | -- | NP_190563.1 LOB domain-containing protein 38 [Arabidopsis thaliana] | 17 | 26 | 15 | 17 |
| AT3G50960 | transcription only | 1.5634991846122006 | -0.23111145554885687 | AT3G50960 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005874,microtubule; GO:0043622,cortical microtubule organization; GO:0048487,beta-tubulin binding; | -- | NP_001325881.1 thioredoxin domain PLP3A-like protein [Arabidopsis thaliana] | 31 | 41 | 28 | 14 |
| AT3G52100 | transcription only | -1.250332719337807 | -0.2190052459132668 | AT3G52100 | -- | GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0006351,DNA-templated transcription; GO:0009506,plasmodesma; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding; | -- | NP_001327259.1 RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana] | 37 | 54 | 32 | 21 |
| AT3G52230 | transcription only | -1.0275445839618462 | 0.8682761232373197 | AT3G52230 | -- | GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; | -- | NP_566963.1 hypothetical protein AT3G52230 [Arabidopsis thaliana] | 207 | 145 | 241 | 182 |
| AT3G52380 | transcription only | 1.000895831963273 | -0.1888015887757805 | AT3G52380 | -- | GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0031425,chloroplast RNA processing; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex; | -- | NP_190806.1 chloroplast RNA-binding protein 33 [Arabidopsis thaliana] | 199 | 176 | 113 | 103 |
| AT3G53380 | transcription only | -1.5806518119808548 | -0.23737256108165147 | AT3G53380 | -- | GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity; | -- | NP_190906.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana] | 70 | 60 | 47 | 27 |
| AT3G53950 | transcription only | -1.2389731060966327 | 0.05283244693072992 | AT3G53950 | -- | GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0016020,membrane; | -- | NP_190963.1 glyoxal oxidase-related protein [Arabidopsis thaliana] | 97 | 85 | 60 | 63 |
| AT3G54600 | transcription only | -2.3942947764863605 | 0.5258341838954474 | AT3G54600 | -- | GO:0003674,molecular_function; GO:0005829,cytosol; | DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881; | NP_191023.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana] | 74 | 69 | 69 | 66 |
| AT3G54980 | transcription only | 1.0077872306865665 | -0.0681479324231393 | AT3G54980 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process; | -- | NP_001325869.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana] | 82 | 54 | 42 | 42 |
| AT3G56960 | transcription only | 3.509027293615188 | -0.5906450636493759 | AT3G56960 | -- | GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0007164,establishment of tissue polarity; GO:0009827,plant-type cell wall modification; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016307,phosphatidylinositol phosphate kinase activity; GO:0016308,1-phosphatidylinositol-4-phosphate 5-kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0044238,primary metabolic process; GO:0046488,phosphatidylinositol metabolic process; GO:0046854,phosphatidylinositol phosphate biosynthetic process; GO:0071704,organic substance metabolic process; GO:0090406,pollen tube; | PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]; K00889; | KAG7634709.1 Phosphatidylinositol-4-phosphate 5-kinase core [Arabidopsis suecica] | 36 | 38 | 9 | 22 |
| AT3G56990 | transcription only | 1.4877449560040212 | 0.5929738556716003 | AT3G56990 | -- | GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009561,megagametogenesis; GO:0016020,membrane; GO:0032040,small-subunit processome; | -- | NP_191258.2 embryo sac development arrest 7 [Arabidopsis thaliana] | 126 | 84 | 128 | 82 |
| AT3G57710 | transcription only | -1.2463715503719606 | -0.14912826064662943 | AT3G57710 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007166,cell surface receptor signaling pathway; GO:0009266,response to temperature stimulus; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:1900426,positive regulation of defense response to bacterium; | -- | NP_191330.1 Protein kinase superfamily protein [Arabidopsis thaliana] | 48 | 34 | 24 | 24 |
| AT3G57830 | transcription only | -1.3077996819940716 | -0.34703028487977333 | AT3G57830 | -- | GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; | -- | NP_001326829.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 67 | 75 | 45 | 30 |
| AT3G57910 | transcription only | -1.191549602526204 | -0.7048112630430613 | AT3G57910 | -- | GO:0000776,kinetochore; GO:0003676,nucleic acid binding; GO:0008150,biological_process; | -- | NP_191350.1 D111/G-patch domain-containing protein [Arabidopsis thaliana] | 36 | 18 | 9 | 12 |
| AT3G61070 | transcription only | 1.6385183191482742 | -0.1357343714289595 | AT3G61070 | -- | GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0005829,cytosol; GO:0007031,peroxisome organization; GO:0007623,circadian rhythm; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size; | -- | NP_001078322.1 peroxin 11E [Arabidopsis thaliana] | 180 | 235 | 147 | 107 |
| AT3G61470 | transcription only | -1.1942982724697089 | -0.31895309839460684 | AT3G61470 | -- | GO:0005515,protein binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; | LHCA2; light-harvesting complex I chlorophyll a/b binding protein 2; K08908; | NP_191706.2 photosystem I light harvesting complex protein [Arabidopsis thaliana] | 2075 | 1979 | 1196 | 957 |
| AT3G61540 | transcription only | -3.376926107849828 | 0.401234551474238 | AT3G61540 | -- | GO:0004177,aminopeptidase activity; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; | -- | NP_191713.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 84 | 92 | 88 | 67 |
| AT3G62290 | transcription only | -1.3738730399514354 | -0.1898761285858855 | AT3G62290 | -- | GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0016004,phospholipase activator activity; GO:0016192,vesicle-mediated transport; GO:0050790,regulation of catalytic activity; | ARF1_2; ADP-ribosylation factor 1/2; K07937; | NP_001190161.1 ADP-ribosylation factor A1E [Arabidopsis thaliana] | 1132 | 1056 | 691 | 576 |
| AT3G62650 | transcription only | 1.0093953923311123 | 0.30827275947616545 | AT3G62650 | -- | -- | -- | NP_191824.1 hypothetical protein AT3G62650 [Arabidopsis thaliana] | 435 | 388 | 397 | 281 |
| AT3G62720 | transcription only | -1.593907184389572 | 0.33585895538839017 | AT3G62720 | -- | GO:0000139,Golgi membrane; GO:0000271,polysaccharide biosynthetic process; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006486,protein glycosylation; GO:0009969,xyloglucan biosynthetic process; GO:0010411,xyloglucan metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0033843,xyloglucan 6-xylosyltransferase activity; GO:0035252,UDP-xylosyltransferase activity; GO:0046872,metal ion binding; | -- | NP_001030917.1 xylosyltransferase 1 [Arabidopsis thaliana] | 132 | 146 | 122 | 110 |
| AT3G63130 | transcription only | -1.118998627727685 | 0.13312891307204436 | AT3G63130 | -- | GO:0000911,cytokinesis by cell plate formation; GO:0005096,GTPase activator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0006606,protein import into nucleus; GO:0009504,cell plate; GO:0009524,phragmoplast; GO:0016020,membrane; GO:0031965,nuclear membrane; GO:0032153,cell division site; GO:0050790,regulation of catalytic activity; | RANGAP1; Ran GTPase-activating protein 1; K14319; | NP_001190166.1 RAN GTPase activating protein 1 [Arabidopsis thaliana] | 358 | 318 | 267 | 222 |
| AT3G63440 | transcription only | -1.2419246692051988 | -0.21329955584621324 | AT3G63440 | -- | GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009690,cytokinin metabolic process; GO:0010103,stomatal complex morphogenesis; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding; | CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279; | NP_191903.3 cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana] | 45 | 21 | 21 | 16 |
| AT3G63450 | transcription only | -2.0796018026712586 | 0.4441479649948421 | AT3G63450 | -- | GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; | -- | NP_001190170.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 38 | 38 | 35 | 33 |
| AT3G63470 | transcription only | 1.0057583544054345 | -0.5212585274001417 | AT3G63470 | -- | GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; | -- | NP_191906.1 serine carboxypeptidase-like 40 [Arabidopsis thaliana] | 166 | 171 | 98 | 60 |
| AT3G63540 | transcription only | -1.415451533171696 | -0.3414428478050164 | AT3G63540 | -- | GO:0005509,calcium ion binding; GO:0009523,photosystem II; GO:0009654,photosystem II oxygen evolving complex; GO:0015979,photosynthesis; GO:0019898,extrinsic component of membrane; | -- | NP_001190172.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein), partial [Arabidopsis thaliana] | 311 | 256 | 158 | 136 |
| AT4G00170 | transcription only | 4.158207637539667 | -0.08508848486036068 | AT4G00170 | -- | GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization; | -- | NP_567153.1 Plant VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] | 47 | 69 | 28 | 43 |
| AT4G01037 | transcription only | -1.282858618885016 | 0.3738168761071889 | AT4G01037 | -- | GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015979,photosynthesis; | -- | NP_001118908.1 Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] | 167 | 136 | 124 | 131 |
| AT4G01070 | transcription only | -1.0654733321426662 | -0.07127895644717137 | AT4G01070 | -- | GO:0006805,xenobiotic metabolic process; GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0042178,xenobiotic catabolic process; GO:0050505,hydroquinone glucosyltransferase activity; | -- | NP_192016.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 195 | 215 | 130 | 127 |
| AT4G01370 | transcription only | -1.3207894150933646 | -0.24946554237745003 | AT4G01370 | -- | GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0002376,immune system process; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0006972,hyperosmotic response; GO:0007112,male meiosis cytokinesis; GO:0009409,response to cold; GO:0009504,cell plate; GO:0009555,pollen development; GO:0009620,response to fungus; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009861,jasmonic acid and ethylene-dependent systemic resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009868,jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0042539,hypotonic salinity response; GO:0043622,cortical microtubule organization; GO:0045087,innate immune response; GO:0071244,cellular response to carbon dioxide; GO:0090333,regulation of stomatal closure; GO:0106310,protein serine kinase activity; | MPK4; mitogen-activated protein kinase 4 [EC:2.7.11.24]; K20600; | NP_192046.1 MAP kinase 4 [Arabidopsis thaliana] | 221 | 202 | 134 | 102 |
| AT4G01690 | transcription only | 1.202644863209843 | -9.929844889879787e-4 | AT4G01690 | -- | GO:0004729,oxygen-dependent protoporphyrinogen oxidase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity; | PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]; K00231; | NP_192078.1 Flavin containing amine oxidoreductase family [Arabidopsis thaliana] | 341 | 304 | 231 | 194 |
| AT4G01800 | transcription only | 1.432338745605671 | 0.09874209027448888 | AT4G01800 | -- | GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009646,response to absence of light; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010090,trichome morphogenesis; GO:0010109,regulation of photosynthesis; GO:0015031,protein transport; GO:0015462,ABC-type protein transporter activity; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0017038,protein import; GO:0071806,protein transmembrane transport; | secA; preprotein translocase subunit SecA [EC:7.4.2.8]; K03070; | NP_001328302.1 Albino or Glassy Yellow 1 [Arabidopsis thaliana] | 461 | 468 | 386 | 278 |
| AT4G01840 | transcription only | 1.2366537870452388 | 0.5187474677150423 | AT4G01840 | -- | GO:0005267,potassium channel activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009705,plant-type vacuole membrane; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0022841,potassium ion leak channel activity; GO:0030322,stabilization of membrane potential; GO:0046872,metal ion binding; GO:0071805,potassium ion transmembrane transport; | -- | NP_192093.1 Ca2+ activated outward rectifying K+ channel 5 [Arabidopsis thaliana] | 20 | 29 | 31 | 17 |
| AT4G02130 | transcription only | -1.9128502750003928 | 0.0843454376273678 | AT4G02130 | -- | GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization; | -- | NP_001031573.1 galacturonosyltransferase 6 [Arabidopsis thaliana] | 90 | 99 | 67 | 65 |
| AT4G02440 | transcription only | 1.6109402162475983 | 0.29543290267566863 | AT4G02440 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009585,red, far-red light phototransduction; GO:0010017,red or far-red light signaling pathway; GO:0010099,regulation of photomorphogenesis; GO:0016567,protein ubiquitination; GO:0048366,leaf development; GO:0048573,photoperiodism, flowering; | -- | NP_192153.1 F-box family protein [Arabidopsis thaliana] | 88 | 96 | 93 | 59 |
| AT4G02610 | transcription only | 1.281783492808904 | 0.4034266560809128 | AT4G02610 | -- | GO:0000162,tryptophan biosynthetic process; GO:0004834,tryptophan synthase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009851,auxin biosynthetic process; GO:0016829,lyase activity; GO:0033984,indole-3-glycerol-phosphate lyase activity; | trpA; tryptophan synthase alpha chain [EC:4.2.1.20]; K01695; | NP_192170.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | 209 | 140 | 176 | 128 |
| AT4G05180 | transcription only | -1.235842319427374 | -0.927799679803194 | AT4G05180 | -- | GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast; | psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901; | NP_001319873.1 photosystem II subunit Q-2 [Arabidopsis thaliana] | 2245 | 1949 | 819 | 639 |
| AT4G05190 | transcription only | -1.3863551283434072 | -0.40961949152468274 | AT4G05190 | -- | GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0007018,microtubule-based movement; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0016887,ATP hydrolysis activity; GO:0051225,spindle assembly; GO:0051301,cell division; | -- | NP_192428.2 kinesin 5 [Arabidopsis thaliana] | 83 | 82 | 60 | 25 |
| AT4G09000 | transcription only | -1.1536646053913286 | -0.6006933240336635 | AT4G09000 | -- | GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016020,membrane; GO:0019222,regulation of metabolic process; GO:0045309,protein phosphorylated amino acid binding; GO:0048046,apoplast; | YWHAE; 14-3-3 protein epsilon; K06630; | NP_001154216.1 general regulatory factor 1 [Arabidopsis thaliana] | 1586 | 1552 | 777 | 598 |
| AT4G11450 | transcription only | 1.0272961408343724 | 0.5972108858097392 | AT4G11450 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; | -- | NP_192884.1 bromo-adjacent domain protein, putative (DUF3527) [Arabidopsis thaliana] | 50 | 23 | 47 | 26 |
| AT4G12290 | transcription only | -1.1483324728264206 | 0.1242983965479565 | AT4G12290 | -- | GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009753,response to jasmonic acid; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; GO:1903426,regulation of reactive oxygen species biosynthetic process; | AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276; | NP_192966.5 Copper amine oxidase family protein [Arabidopsis thaliana] | 756 | 636 | 561 | 441 |
| AT4G12300 | transcription only | -1.2625254179875212 | -0.25453296777579776 | AT4G12300 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_192967.1 cytochrome P450, family 706, subfamily A, polypeptide 4 [Arabidopsis thaliana] | 109 | 89 | 53 | 55 |
| AT4G12800 | transcription only | -1.8912666491766992 | 0.4272083227250229 | AT4G12800 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0031969,chloroplast membrane; | psaL; photosystem I subunit XI; K02699; | NP_001328992.1 photosystem I subunit l [Arabidopsis thaliana] | 3690 | 3748 | 3811 | 2855 |
| AT4G12840 | transcription only | -1.3811190093882126 | -0.16577280583590534 | AT4G12840 | -- | GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; | -- | NP_001154227.2 GTPase Der (DUF707) [Arabidopsis thaliana] | 57 | 30 | 31 | 20 |
| AT4G13160 | transcription only | 2.494012283094066 | 0.47944491138536816 | AT4G13160 | -- | GO:0004674,protein serine/threonine kinase activity; GO:0005575,cellular_component; GO:0016020,membrane; GO:0046777,protein autophosphorylation; GO:0080115,myosin XI tail binding; | -- | NP_193052.1 zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana] | 21 | 9 | 25 | 4 |
| AT4G13510 | transcription only | -1.2240797741760092 | -0.08151585655163823 | AT4G13510 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006812,cation transport; GO:0008519,ammonium transmembrane transporter activity; GO:0009506,plasmodesma; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0043621,protein self-association; GO:0051258,protein polymerization; GO:0071705,nitrogen compound transport; GO:0072488,ammonium transmembrane transport; GO:0080181,lateral root branching; GO:0097272,ammonium homeostasis; GO:0110067,ammonium transmembrane transporter complex; | -- | NP_193087.1 ammonium transporter 1;1 [Arabidopsis thaliana] | 507 | 401 | 324 | 243 |
| AT4G13920 | transcription only | -1.122997680206749 | -0.6977358463089904 | AT4G13920 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane; | -- | NP_567412.1 receptor like protein 50 [Arabidopsis thaliana] | 15 | 13 | 4 | 7 |
| AT4G13940 | transcription only | -1.116996274698065 | -0.4685564542777668 | AT4G13940 | -- | GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004013,adenosylhomocysteinase activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006346,DNA methylation-dependent heterochromatin formation; GO:0006730,one-carbon metabolic process; GO:0009506,plasmodesma; GO:0009793,embryo development ending in seed dormancy; GO:0016441,post-transcriptional gene silencing; GO:0016787,hydrolase activity; GO:0033353,S-adenosylmethionine cycle; | E3.3.1.1, ahcY; adenosylhomocysteinase [EC:3.3.1.1]; K01251; | NP_193130.1 S-adenosyl-L-homocysteine hydrolase [Arabidopsis thaliana] | 8766 | 8067 | 4602 | 3475 |
| AT4G14120 | transcription only | -1.314557015585479 | -0.4245912091498477 | AT4G14120 | -- | GO:0005575,cellular_component; GO:0008150,biological_process; | -- | NP_193148.2 hypothetical protein AT4G14120 [Arabidopsis thaliana] | 40 | 19 | 13 | 15 |
| AT4G15490 | transcription only | -1.6281492440986494 | -0.620603775654229 | AT4G15490 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0047218,hydroxycinnamate 4-beta-glucosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0050412,cinnamate beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; | -- | NP_193284.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 116 | 110 | 52 | 45 |
| AT4G15545 | transcription only | -2.339570287998444 | -0.1666729798759522 | AT4G15545 | -- | GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0010168,ER body; GO:0043621,protein self-association; GO:0080119,ER body organization; | -- | NP_567470.1 PH-response transcription factor [Arabidopsis thaliana] | 49 | 52 | 45 | 17 |
| AT4G15630 | transcription only | -1.1558315117270557 | 0.0712241422858237 | AT4G15630 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043424,protein histidine kinase binding; GO:0051539,4 iron, 4 sulfur cluster binding; | -- | NP_567473.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana] | 82 | 63 | 49 | 50 |
| AT4G15780 | transcription only | -1.584608408122028 | 0.02383171454014878 | AT4G15780 | -- | GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; | -- | NP_193313.6 vesicle-associated membrane protein 724 [Arabidopsis thaliana] | 30 | 29 | 18 | 21 |
| AT4G17870 | transcription only | 1.1816151334292109 | -0.5625248170235017 | AT4G17870 | -- | GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0044389,ubiquitin-like protein ligase binding; GO:0062049,protein phosphatase inhibitor complex; GO:0080163,regulation of protein serine/threonine phosphatase activity; GO:1902584,positive regulation of response to water deprivation; | PYL; abscisic acid receptor PYR/PYL family; K14496; | NP_193521.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana] | 69 | 89 | 53 | 21 |
| AT4G18100 | transcription only | 1.1693019334153265 | -0.07571912516607061 | AT4G18100 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; | RP-L32e, RPL32; large subunit ribosomal protein L32e; K02912; | NP_193544.1 Ribosomal protein L32e [Arabidopsis thaliana] | 1067 | 928 | 688 | 561 |
| AT4G18740 | transcription only | 1.4516324999030377 | -0.1488972087355923 | AT4G18740 | -- | GO:0003674,molecular_function; GO:0006353,DNA-templated transcription termination; | -- | NP_974569.1 Rho termination factor [Arabidopsis thaliana] | 23 | 10 | 4 | 14 |
| AT4G19120 | transcription only | -2.236659252293311 | 0.02817825757065922 | AT4G19120 | -- | GO:0000138,Golgi trans cisterna; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; | -- | NP_567575.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 634 | 635 | 520 | 347 |
| AT4G21770 | transcription only | 1.0404051293998895 | 0.03942417421431228 | AT4G21770 | -- | GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; | -- | NP_193908.1 Pseudouridine synthase family protein [Arabidopsis thaliana] | 65 | 25 | 35 | 25 |
| AT4G21780 | transcription only | -1.9127404306288232 | 0.5808235795486599 | AT4G21780 | -- | -- | -- | NP_001328477.1 hypothetical protein AT4G21780 [Arabidopsis thaliana] | 7 | 6 | 8 | 5 |
| AT4G21810 | transcription only | 1.207621444938518 | -0.9666559844185963 | AT4G21810 | -- | GO:0000839,Hrd1p ubiquitin ligase ERAD-L complex; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006950,response to stress; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0051787,misfolded protein binding; GO:1990381,ubiquitin-specific protease binding; | DERL2_3; Derlin-2/3; K13989; | NP_193912.3 DERLIN-2.1 [Arabidopsis thaliana] | 91 | 117 | 55 | 19 |
| AT4G22320 | transcription only | 1.0412425208632414 | -0.9499072158613652 | AT4G22320 | -- | GO:0008150,biological_process; | -- | NP_001190798.1 golgin family A protein [Arabidopsis thaliana] | 39 | 40 | 20 | 8 |
| AT4G22530 | transcription only | 1.8317717455005869 | -0.21261285547008407 | AT4G22530 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; | -- | NP_001329270.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 68 | 66 | 50 | 28 |
| AT4G23530 | transcription only | 1.0494668584659863 | -0.40504550077711865 | AT4G23530 | -- | GO:0003674,molecular_function; GO:0005575,cellular_component; | -- | NP_194084.1 ROH1, putative (DUF793) [Arabidopsis thaliana] | 45 | 30 | 20 | 17 |
| AT4G23800 | transcription only | 2.8803137383378874 | -0.19435614351267969 | AT4G23800 | -- | GO:0000793,condensed chromosome; GO:0000794,condensed nuclear chromosome; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; | -- | NP_194111.1 HMG (high mobility group) box protein [Arabidopsis thaliana] | 475 | 404 | 276 | 230 |
| AT4G24350 | transcription only | 1.4802879906093849 | -0.8048467485565796 | AT4G24350 | -- | GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0009116,nucleoside metabolic process; GO:0009611,response to wounding; | -- | NP_194166.2 Phosphorylase superfamily protein [Arabidopsis thaliana] | 26 | 18 | 1 | 14 |
| AT4G24370 | transcription only | -1.9913002592945384 | -0.2455060848147601 | AT4G24370 | -- | GO:0005515,protein binding; | -- | NP_567700.1 hypothetical protein AT4G24370 [Arabidopsis thaliana] | 58 | 41 | 37 | 19 |
| AT4G24380 | transcription only | -1.0907911411139728 | -0.7971561893310635 | AT4G24380 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016787,hydrolase activity; | -- | NP_567701.1 dihydrofolate reductase [Arabidopsis thaliana] | 446 | 398 | 200 | 125 |
| AT4G26230 | transcription only | 1.5522745024353823 | 0.590160211335932 | AT4G26230 | -- | GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; | RP-L31e, RPL31; large subunit ribosomal protein L31e; K02910; | NP_194353.1 Ribosomal protein L31e family protein [Arabidopsis thaliana] | 268 | 227 | 295 | 201 |
| AT4G26240 | transcription only | 1.2425405956820397 | 0.1575237958834601 | AT4G26240 | -- | GO:0016020,membrane; | -- | NP_567740.1 histone-lysine N-methyltransferase [Arabidopsis thaliana] | 83 | 54 | 50 | 49 |
| AT4G26300 | transcription only | 2.08285556983532 | 0.5149884934914053 | AT4G26300 | -- | GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004814,arginine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006420,arginyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0016874,ligase activity; GO:0048608,reproductive structure development; | RARS, argS; arginyl-tRNA synthetase [EC:6.1.1.19]; K01887; | NP_194360.1 Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] | 424 | 301 | 343 | 330 |
| AT4G26600 | transcription only | -1.4329550920894767 | 0.9214110961200696 | AT4G26600 | -- | GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; GO:0070475,rRNA base methylation; | -- | NP_001328282.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 84 | 79 | 122 | 84 |
| AT4G26790 | transcription only | -1.0294748868454515 | 0.09627041242762968 | AT4G26790 | -- | GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; | -- | NP_567758.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana] | 70 | 101 | 70 | 53 |
| AT4G27950 | transcription only | -1.330053078025928 | 0.1466383534716307 | AT4G27950 | ERF | GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development; | -- | NP_194524.2 cytokinin response factor 4 [Arabidopsis thaliana] | 50 | 24 | 34 | 20 |
| AT4G28160 | transcription only | -1.2598874875448938 | 0.4638473818356169 | AT4G28160 | -- | -- | -- | NP_194545.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] | 10 | 3 | 9 | 3 |
| AT4G29380 | transcription only | 1.3516106172118891 | 0.6091352511719477 | AT4G29380 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005770,late endosome; GO:0005794,Golgi apparatus; GO:0005942,phosphatidylinositol 3-kinase complex; GO:0006468,protein phosphorylation; GO:0006623,protein targeting to vacuole; GO:0006914,autophagy; GO:0009555,pollen development; GO:0009846,pollen germination; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016236,macroautophagy; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030242,autophagy of peroxisome; GO:0032991,protein-containing complex; GO:0034271,phosphatidylinositol 3-kinase complex, class III, type I; GO:0034272,phosphatidylinositol 3-kinase complex, class III, type II; GO:0045324,late endosome to vacuole transport; GO:0048015,phosphatidylinositol-mediated signaling; GO:0071561,nucleus-vacuole junction; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:0106310,protein serine kinase activity; | PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]; K08333; | NP_194667.1 protein kinase family protein / WD-40 repeat family protein [Arabidopsis thaliana] | 115 | 156 | 155 | 122 |
| AT4G29880 | transcription only | -1.7507797230447009 | 0.5356946560828991 | AT4G29880 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process; | -- | NP_194717.2 plant intracellular ras group-related LRR 7 [Arabidopsis thaliana] | 11 | 9 | 10 | 9 |
| AT4G30480 | transcription only | 1.139210204115502 | 0.4001637081943027 | AT4G30480 | -- | GO:0005515,protein binding; GO:0051879,Hsp90 protein binding; | -- | NP_001031756.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] | 76 | 54 | 54 | 57 |
| AT4G31700 | transcription only | 1.874778431056474 | 0.6632416439339737 | AT4G31700 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; | RP-S6e, RPS6; small subunit ribosomal protein S6e; K02991; | NP_194898.1 ribosomal protein S6 [Arabidopsis thaliana] | 1698 | 1324 | 1782 | 1374 |
| AT4G32450 | transcription only | 1.0941833994094123 | -0.5235779432855547 | AT4G32450 | -- | GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle; | -- | NP_194971.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana] | 14 | 6 | 5 | 4 |
| AT4G33620 | transcription only | -1.4370861959599308 | 0.43111545483448127 | AT4G33620 | -- | GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0070139,SUMO-specific endopeptidase activity; | -- | NP_001320126.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana] | 24 | 15 | 17 | 17 |
| AT4G34138 | transcription only | 1.7592151971797183 | 0.30484517125604954 | AT4G34138 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; | -- | NP_567955.1 UDP-glucosyl transferase 73B1 [Arabidopsis thaliana] | 54 | 40 | 46 | 31 |
| AT4G34670 | transcription only | 1.8209288783346311 | -0.04895618140453176 | AT4G34670 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; | RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae; K02984; | NP_195193.1 Ribosomal protein S3Ae [Arabidopsis thaliana] | 2426 | 2334 | 1723 | 1332 |
| AT4G36140 | transcription only | 1.4122335873725314 | 0.8043083337878444 | AT4G36140 | -- | GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043130,ubiquitin binding; GO:0043531,ADP binding; | -- | NP_195337.1 disease resistance protein (TIR-NBS-LRR class) [Arabidopsis thaliana] | 16 | 23 | 22 | 23 |
| AT4G36380 | transcription only | 1.5068258424443246 | 0.1429589949734505 | AT4G36380 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0009965,leaf morphogenesis; GO:0010268,brassinosteroid homeostasis; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042814,monopolar cell growth; GO:0046872,metal ion binding; GO:0048366,leaf development; GO:0048441,petal development; GO:0048443,stamen development; GO:0102097,(22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity; GO:0102136,3-epi-6-deoxocathasterone C-23 hydroxylase activity; | CYP90C1, ROT3; 3-epi-6-deoxocathasterone 23-monooxygenase [EC:1.14.14.147]; K12637; | NP_568002.1 Cytochrome P450 superfamily protein [Arabidopsis thaliana] | 72 | 90 | 99 | 27 |
| AT4G36400 | transcription only | 1.0410077062363312 | -0.02271536702807976 | AT4G36400 | -- | GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0009853,photorespiration; GO:0010230,alternative respiration; GO:0016491,oxidoreductase activity; GO:0047545,2-hydroxyglutarate dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0051990,(R)-2-hydroxyglutarate dehydrogenase activity; GO:0071949,FAD binding; | D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39]; K18204; | NP_001320151.1 FAD-linked oxidases family protein [Arabidopsis thaliana] | 171 | 160 | 116 | 99 |
| AT4G36960 | transcription only | 1.0698982814446223 | -0.14254388770242013 | AT4G36960 | -- | GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:1990904,ribonucleoprotein complex; | MSI; RNA-binding protein Musashi; K14411; | NP_001154290.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 69 | 88 | 47 | 47 |
| AT4G37200 | transcription only | 1.3231866597594089 | 0.01080360904530801 | AT4G37200 | -- | GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0031977,thylakoid lumen; | -- | NP_195437.1 Thioredoxin superfamily protein [Arabidopsis thaliana] | 74 | 81 | 69 | 37 |
| AT4G37260 | transcription only | -1.6646085762117535 | 0.1957258386200313 | AT4G37260 | MYB | GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0019760,glucosinolate metabolic process; GO:1901001,negative regulation of response to salt stress; | -- | NP_195443.1 myb domain protein 73 [Arabidopsis thaliana] | 223 | 230 | 194 | 151 |
| AT4G37330 | transcription only | -1.2472572463130496 | -0.2764313701684432 | AT4G37330 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_195450.1 cytochrome P450, family 81, subfamily D, polypeptide 4 [Arabidopsis thaliana] | 76 | 76 | 34 | 47 |
| AT4G37670 | transcription only | 1.967136001237051 | -0.09736613526009254 | AT4G37670 | -- | GO:0004042,acetyl-CoA:L-glutamate N-acetyltransferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006526,arginine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0103045,methione N-acyltransferase activity; | argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]; K14682; | NP_974701.1 N-acetyl-l-glutamate synthase 2 [Arabidopsis thaliana] | 24 | 21 | 22 | 7 |
| AT4G37870 | transcription only | -1.26734160060158 | -0.3345873332734464 | AT4G37870 | -- | GO:0000166,nucleotide binding; GO:0004611,phosphoenolpyruvate carboxykinase activity; GO:0004612,phosphoenolpyruvate carboxykinase (ATP) activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0016036,cellular response to phosphate starvation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0017076,purine nucleotide binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; | E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]; K01610; | NP_195500.1 phosphoenolpyruvate carboxykinase 1 [Arabidopsis thaliana] | 863 | 720 | 444 | 381 |
| AT4G37930 | transcription only | -1.236388503150952 | -0.999651452475716 | AT4G37930 | -- | GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004372,glycine hydroxymethyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006544,glycine metabolic process; GO:0006563,L-serine metabolic process; GO:0006565,L-serine catabolic process; GO:0006730,one-carbon metabolic process; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009626,plant-type hypersensitive response; GO:0009853,photorespiration; GO:0010319,stromule; GO:0016740,transferase activity; GO:0019264,glycine biosynthetic process from serine; GO:0022626,cytosolic ribosome; GO:0030170,pyridoxal phosphate binding; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046655,folic acid metabolic process; GO:0048046,apoplast; GO:0070905,serine binding; | glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1]; K00600; | NP_195506.1 serine transhydroxymethyltransferase 1 [Arabidopsis thaliana] | 2791 | 2586 | 989 | 791 |
| AT4G38440 | transcription only | -1.7138437066627483 | 0.1368503508760161 | AT4G38440 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0030154,cell differentiation; | -- | NP_195557.2 RPAP1-like, carboxy-terminal protein [Arabidopsis thaliana] | 130 | 117 | 123 | 61 |
| AT4G38770 | transcription only | -1.2609613517899303 | 0.07541518754409543 | AT4G38770 | -- | GO:0005576,extracellular region; | -- | NP_195588.1 proline-rich protein 4 [Arabidopsis thaliana] | 2250 | 2171 | 1797 | 1307 |
| AT4G39200 | transcription only | 1.1443114307098268 | 0.27140857719525197 | AT4G39200 | -- | GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; | RP-S25e, RPS25; small subunit ribosomal protein S25e; K02975; | NP_195631.1 Ribosomal protein S25 family protein [Arabidopsis thaliana] | 216 | 260 | 206 | 176 |
| AT4G39960 | transcription only | -1.4910599645327678 | 0.02149957467188096 | AT4G39960 | -- | GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009941,chloroplast envelope; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; | -- | NP_001329618.1 Molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana] | 201 | 234 | 126 | 161 |
| AT5G01180 | transcription only | 1.7733531080766805 | -0.470007211249975 | AT5G01180 | -- | GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035442,dipeptide transmembrane transport; GO:0042937,tripeptide transmembrane transporter activity; GO:0042938,dipeptide transport; GO:0042939,tripeptide transport; GO:0055085,transmembrane transport; GO:0071916,dipeptide transmembrane transporter activity; | -- | NP_001331271.1 peptide transporter 5 [Arabidopsis thaliana] | 70 | 77 | 25 | 43 |
| AT5G02500 | transcription only | -1.288091691335166 | 0.04669905295571873 | AT5G02500 | -- | GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0006952,defense response; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0010187,negative regulation of seed germination; GO:0010286,heat acclimation; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0042742,defense response to bacterium; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0090332,stomatal closure; GO:0098542,defense response to other organism; GO:0140662,ATP-dependent protein folding chaperone; | HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283; | NP_195870.1 heat shock cognate protein 70-1 [Arabidopsis thaliana] | 11030 | 9043 | 7633 | 6039 |
| AT5G02770 | transcription only | -1.0589587450732796 | -0.4338537198418711 | AT5G02770 | -- | GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0051028,mRNA transport; | -- | NP_195897.1 Protein MODIFIER OF SNC1 11 [Arabidopsis thaliana] | 141 | 149 | 81 | 62 |
| AT5G02820 | transcription only | -2.317505855192873 | 0.05718829786389882 | AT5G02820 | -- | GO:0000166,nucleotide binding; GO:0000228,nuclear chromosome; GO:0000287,magnesium ion binding; GO:0000706,meiotic DNA double-strand break processing; GO:0003677,DNA binding; GO:0003824,catalytic activity; GO:0003916,DNA topoisomerase activity; GO:0003918,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006259,DNA metabolic process; GO:0006265,DNA topological change; GO:0007131,reciprocal meiotic recombination; GO:0009330,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex; GO:0009957,epidermal cell fate specification; GO:0016853,isomerase activity; GO:0042138,meiotic DNA double-strand break formation; GO:0042802,identical protein binding; GO:0046872,metal ion binding; | SPO11; meiotic recombination protein SPO11; K10878; | NP_195902.1 Spo11/DNA topoisomerase VI, subunit A protein [Arabidopsis thaliana] | 55 | 39 | 40 | 25 |
| AT5G02890 | transcription only | -1.2112622248514862 | -0.18409326279513535 | AT5G02890 | -- | GO:0005575,cellular_component; GO:0010025,wax biosynthetic process; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0042759,long-chain fatty acid biosynthetic process; | -- | NP_195909.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana] | 90 | 57 | 49 | 36 |
| AT5G03140 | transcription only | -2.0170760641188505 | -0.7676156471130487 | AT5G03140 | -- | GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity; | -- | NP_195934.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana] | 20 | 31 | 16 | 5 |
| AT5G03200 | transcription only | -1.2124490493880569 | -0.2550363705490886 | AT5G03200 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; | -- | NP_195940.1 RING/U-box superfamily protein [Arabidopsis thaliana] | 47 | 46 | 25 | 26 |
| AT5G03240 | transcription only | -1.6608113017035029 | -0.21791068658720508 | AT5G03240 | -- | GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010224,response to UV-B; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding; | UBC; ubiquitin C; K08770; | NP_001031824.1 polyubiquitin 3 [Arabidopsis thaliana] | 1923 | 1937 | 1230 | 974 |
| AT5G03620 | transcription only | -1.5073074827262336 | -0.6798189520659158 | AT5G03620 | -- | GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity; | -- | NP_001331443.1 Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana] | 88 | 65 | 25 | 36 |
| AT5G04770 | transcription only | 1.7733721755600973 | -0.5791738749717403 | AT5G04770 | -- | GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0015171,amino acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport; | -- | NP_196097.1 cationic amino acid transporter 6 [Arabidopsis thaliana] | 101 | 75 | 35 | 41 |
| AT5G04930 | transcription only | 1.0710606040074184 | -0.6447760993477739 | AT5G04930 | -- | GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity; | -- | NP_568146.1 aminophospholipid ATPase 1 [Arabidopsis thaliana] | 162 | 142 | 80 | 50 |
| AT5G05460 | transcription only | -2.0005798088215143 | 0.2839462715256748 | AT5G05460 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006491,N-glycan processing; GO:0006517,protein deglycosylation; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033925,mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; | ENGASE; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]; K01227; | NP_196165.3 Glycosyl hydrolase family 85 [Arabidopsis thaliana] | 4 | 12 | 11 | 3 |
| AT5G05860 | transcription only | 1.8452014914061192 | 0.8024725743430096 | AT5G05860 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0009690,cytokinin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042631,cellular response to water deprivation; GO:0047807,cytokinin 7-beta-glucosyltransferase activity; GO:0048316,seed development; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080062,cytokinin 9-beta-glucosyltransferase activity; GO:1900000,regulation of anthocyanin catabolic process; GO:1901527,abscisic acid-activated signaling pathway involved in stomatal movement; | UGT76C1_2; cytokinin-N-glucosyltransferase [EC:2.4.1.-]; K13493; | NP_196205.1 UDP-glucosyl transferase 76C2 [Arabidopsis thaliana] | 9 | 3 | 5 | 8 |
| AT5G06260 | transcription only | 1.2966811477547082 | 0.01951365058479107 | AT5G06260 | -- | GO:0005509,calcium ion binding; | -- | NP_001330374.1 TLD-domain containing nucleolar protein [Arabidopsis thaliana] | 59 | 46 | 44 | 27 |
| AT5G06310 | transcription only | 2.3334478510480627 | 0.22467436269364072 | AT5G06310 | -- | GO:0000723,telomere maintenance; GO:0000781,chromosome, telomeric region; GO:0000783,nuclear telomere cap complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0010521,telomerase inhibitor activity; GO:0016233,telomere capping; GO:0032210,regulation of telomere maintenance via telomerase; GO:0043047,single-stranded telomeric DNA binding; GO:0051974,negative regulation of telomerase activity; GO:0098505,G-rich strand telomeric DNA binding; | -- | NP_196249.2 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] | 16 | 14 | 12 | 11 |
| AT5G06940 | transcription only | -1.822823697543706 | 0.0655290786443837 | AT5G06940 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016740,transferase activity; | -- | NP_196311.1 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana] | 39 | 42 | 24 | 31 |
| AT5G08670 | transcription only | 1.256419775285335 | 0.2407921623420168 | AT5G08670 | -- | GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0005524,ATP binding; GO:0006754,ATP biosynthetic process; GO:0015986,proton motive force-driven ATP synthesis; GO:0016887,ATP hydrolysis activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046034,ATP metabolic process; GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:1902600,proton transmembrane transport; | ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2]; K02133; | NP_568203.2 ATP synthase alpha/beta family protein [Arabidopsis thaliana] | 2043 | 1881 | 1613 | 1436 |
| AT5G09730 | transcription only | 1.3721453197023394 | -0.05371985807154328 | AT5G09730 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; | XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K15920; | NP_196535.1 beta-xylosidase 3 [Arabidopsis thaliana] | 1763 | 1421 | 1183 | 850 |
| AT5G09760 | transcription only | -1.9487183217044188 | 0.1089724468873116 | AT5G09760 | -- | GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; | -- | NP_001331158.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana] | 252 | 232 | 211 | 138 |
| AT5G10790 | transcription only | -2.48855807875764 | 0.4115598064653123 | AT5G10790 | -- | GO:0004843,cysteine-type deubiquitinase activity; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006508,proteolysis; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0008270,zinc ion binding; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0070461,SAGA-type complex; | -- | NP_001332186.1 ubiquitin-specific protease 22 [Arabidopsis thaliana] | 15 | 42 | 35 | 18 |
| AT5G10830 | transcription only | -1.1582632414103722 | -0.05509015917422558 | AT5G10830 | -- | GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; | -- | NP_196644.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 34 | 14 | 12 | 17 |
| AT5G13050 | transcription only | 1.1853498867594832 | 0.04312301896789286 | AT5G13050 | -- | GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006952,defense response; GO:0009396,folic acid-containing compound biosynthetic process; GO:0016874,ligase activity; GO:0030272,5-formyltetrahydrofolate cyclo-ligase activity; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046872,metal ion binding; | MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]; K01934; | NP_568284.1 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana] | 94 | 116 | 62 | 79 |
| AT5G13090 | transcription only | 3.0624646778070757 | 0.942222373014908 | AT5G13090 | -- | -- | -- | KAG7602071.1 hypothetical protein ISN45_At05g011820 [Arabidopsis thaliana x Arabidopsis arenosa] | 33 | 40 | 44 | 48 |
| AT5G13310 | transcription only | -2.181858471843021 | 0.3762565013165146 | AT5G13310 | -- | GO:0003674,molecular_function; | -- | NP_001331631.1 hypothetical protein AT5G13310 [Arabidopsis thaliana] | 42 | 35 | 37 | 29 |
| AT5G13770 | transcription only | 1.2800314062839562 | 0.10396902536576896 | AT5G13770 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization; | -- | NP_196881.2 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana] | 50 | 29 | 34 | 22 |
| AT5G14740 | transcription only | 1.2024276864890842 | -0.09033639317391068 | AT5G14740 | -- | GO:0004089,carbonate dehydratase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015976,carbon utilization; GO:0016829,lyase activity; GO:0048046,apoplast; | cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673; | NP_001031883.1 carbonic anhydrase 2 [Arabidopsis thaliana] | 117 | 120 | 62 | 82 |
| AT5G16710 | transcription only | -1.874443171735226 | -0.3369484591536383 | AT5G16710 | -- | GO:0004364,glutathione transferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009941,chloroplast envelope; GO:0010731,protein glutathionylation; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019852,L-ascorbic acid metabolic process; GO:0033355,ascorbate glutathione cycle; GO:0045174,glutathione dehydrogenase (ascorbate) activity; GO:0098869,cellular oxidant detoxification; GO:0140547,acquisition of seed longevity; | DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18]; K21888; | NP_568336.1 dehydroascorbate reductase 1 [Arabidopsis thaliana] | 78 | 108 | 51 | 47 |
| AT5G16930 | transcription only | -1.7563854523379705 | 0.7333572061185829 | AT5G16930 | -- | GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0016887,ATP hydrolysis activity; | -- | NP_197195.2 AAA-type ATPase family protein [Arabidopsis thaliana] | 68 | 65 | 79 | 67 |
| AT5G16940 | transcription only | 1.582621741666993 | -0.533045108414715 | AT5G16940 | -- | GO:0008150,biological_process; GO:0016829,lyase activity; GO:0016846,carbon-sulfur lyase activity; GO:0046872,metal ion binding; | -- | NP_001154714.1 carbon-sulfur lyase [Arabidopsis thaliana] | 10 | 13 | 8 | 3 |
| AT5G18140 | transcription only | 1.3029200295247727 | 0.4589258751071794 | AT5G18140 | -- | GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042026,protein refolding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; | -- | NP_197315.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana] | 17 | 4 | 8 | 10 |
| AT5G18170 | transcription only | 1.292591378192469 | -0.45705515487258663 | AT5G18170 | -- | GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009536,plastid; GO:0009646,response to absence of light; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0050897,cobalt ion binding; | GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261; | NP_197318.1 glutamate dehydrogenase 1 [Arabidopsis thaliana] | 137 | 107 | 76 | 43 |
| AT5G18780 | transcription only | 1.658129956003338 | -0.09294108910021932 | AT5G18780 | -- | GO:0005515,protein binding; | -- | NP_001190332.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana] | 30 | 13 | 14 | 12 |
| AT5G19510 | transcription only | -1.3738940023992023 | 0.29597116569460263 | AT5G19510 | -- | GO:0003746,translation elongation factor activity; GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005853,eukaryotic translation elongation factor 1 complex; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity; | -- | NP_568375.2 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana] | 1171 | 1140 | 1081 | 807 |
| AT5G19780 | transcription only | 3.312602016750565 | 0.09324047904953252 | AT5G19780 | -- | GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0005200,structural constituent of cytoskeleton; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; | TUBA; tubulin alpha; K07374; | NP_197478.1 tubulin alpha-3 [Arabidopsis thaliana] | 826 | 836 | 650 | 526 |
| AT5G20130 | transcription only | -1.1558313501119588 | -0.4260182516017258 | AT5G20130 | -- | GO:0003674,molecular_function; GO:0016779,nucleotidyltransferase activity; | -- | NP_001332651.1 sulfate adenylyltransferase subunit [Arabidopsis thaliana] | 33 | 55 | 13 | 29 |
| AT5G22250 | transcription only | 1.4436332121736932 | 0.6085265790152504 | AT5G22250 | -- | GO:0000289,nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0008408,3'-5' exonuclease activity; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0042742,defense response to bacterium; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic; | CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581; | NP_197617.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana] | 11 | 14 | 17 | 9 |
| AT5G22650 | transcription only | 2.2119110986331725 | 0.19758204154858736 | AT5G22650 | -- | GO:0000325,plant-type vacuole; GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0048364,root development; | -- | NP_851056.1 histone deacetylase 2B [Arabidopsis thaliana] | 1079 | 962 | 849 | 696 |
| AT5G23590 | transcription only | 1.293660067087116 | 0.09828448383403324 | AT5G23590 | -- | GO:0003676,nucleic acid binding; GO:0003723,RNA binding; | -- | NP_001031930.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] | 63 | 50 | 46 | 34 |
| AT5G23700 | transcription only | 1.3004313103308254 | -0.04961301690124899 | AT5G23700 | -- | GO:0000911,cytokinesis by cell plate formation; GO:0003674,molecular_function; | -- | NP_001330555.1 coiled-coil protein [Arabidopsis thaliana] | 9 | 11 | 13 | 1 |
| AT5G24830 | transcription only | 1.781398987348732 | -0.42696534638191613 | AT5G24830 | -- | GO:0005515,protein binding; | -- | NP_568460.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] | 36 | 13 | 16 | 8 |
| AT5G27290 | transcription only | -1.2790355713496142 | 0.24974884153947305 | AT5G27290 | -- | GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0009507,chloroplast; GO:0016020,membrane; | -- | NP_568492.1 stress regulated protein [Arabidopsis thaliana] | 23 | 16 | 20 | 11 |
| AT5G28300 | transcription only | -1.022491512617095 | -0.42775002539881296 | AT5G28300 | Trihelix | GO:0000987,cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription; | -- | BAE99307.1 GTL1 - like protein [Arabidopsis thaliana] | 98 | 93 | 63 | 33 |
| AT5G28500 | transcription only | -1.491055832568387 | -0.8783676103992227 | AT5G28500 | -- | GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly; | -- | NP_198202.1 rubisco accumulation factor-like protein [Arabidopsis thaliana] | 344 | 299 | 128 | 103 |
| AT5G35360 | transcription only | 1.855884807096034 | 0.05334810763798823 | AT5G35360 | -- | GO:0000166,nucleotide binding; GO:0003989,acetyl-CoA carboxylase activity; GO:0004075,biotin carboxylase activity; GO:0005524,ATP binding; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0046872,metal ion binding; GO:2001295,malonyl-CoA biosynthetic process; | accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]; K01961; | NP_198386.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit [Arabidopsis thaliana] | 1668 | 1583 | 1279 | 963 |
| AT5G37500 | transcription only | 4.462531969625386 | 0.2092214430400799 | AT5G37500 | -- | GO:0005216,ion channel activity; GO:0005244,voltage-gated ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005267,potassium channel activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009753,response to jasmonic acid; GO:0015075,ion transmembrane transporter activity; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0034765,regulation of ion transmembrane transport; GO:0051592,response to calcium ion; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; | -- | NP_001332118.1 gated outwardly-rectifying K+ channel [Arabidopsis thaliana] | 67 | 59 | 68 | 31 |
| AT5G38410 | transcription only | -1.123277229447171 | -0.5734953776178292 | AT5G38410 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016984,ribulose-bisphosphate carboxylase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019904,protein domain specific binding; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0110102,ribulose bisphosphate carboxylase complex assembly; | rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]; K01602; | NP_001119331.1 Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana] | 1732 | 1687 | 964 | 583 |
| AT5G40440 | transcription only | -1.7358267572331083 | -7.457296737540168e-4 | AT5G40440 | -- | GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0004708,MAP kinase kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009864,induced systemic resistance, jasmonic acid mediated signaling pathway; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0080027,response to herbivore; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity; | MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2]; K20607; | NP_001332250.1 mitogen-activated protein kinase kinase 3 [Arabidopsis thaliana] | 163 | 127 | 86 | 101 |
| AT5G40450 | transcription only | -1.521658711645942 | 0.354622806749518 | AT5G40450 | -- | GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0080171,lytic vacuole organization; | -- | NP_001330812.1 A-kinase anchor-like protein [Arabidopsis thaliana] | 722 | 609 | 619 | 503 |
| AT5G43130 | transcription only | -1.5046042296824471 | 0.5265312331718054 | AT5G43130 | -- | GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0006367,transcription initiation at RNA polymerase II promoter; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0046982,protein heterodimerization activity; | TAF4; transcription initiation factor TFIID subunit 4; K03129; | NP_199127.3 TBP-associated factor 4 [Arabidopsis thaliana] | 114 | 88 | 109 | 83 |
| AT5G44040 | transcription only | -1.491055832568387 | 0.06089866785297286 | AT5G44040 | -- | GO:0007142,male meiosis II; | -- | NP_199217.1 eisosome SEG2-like protein [Arabidopsis thaliana] | 52 | 40 | 45 | 20 |
| AT5G44130 | transcription only | -1.9313124806854205 | -0.33997156232597847 | AT5G44130 | -- | GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; | -- | NP_199226.1 FASCICLIN-like arabinogalactan protein 13 precursor [Arabidopsis thaliana] | 55 | 47 | 34 | 20 |
| AT5G44180 | transcription only | 5.352927092299957 | -0.05127003101195225 | AT5G44180 | HB-other | GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0031010,ISWI-type complex; GO:0043229,intracellular organelle; GO:0045892,negative regulation of DNA-templated transcription; | -- | NP_001318738.1 Homeodomain-like transcriptional regulator [Arabidopsis thaliana] | 161 | 134 | 100 | 87 |
| AT5G44785 | transcription only | 1.1461418604682 | 0.43694453596324495 | AT5G44785 | -- | GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005739,mitochondrion; GO:0006260,DNA replication; GO:0006264,mitochondrial DNA replication; GO:0009295,nucleoid; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042645,mitochondrial nucleoid; GO:0051096,positive regulation of helicase activity; | -- | NP_568639.1 organellar single-stranded DNA binding protein 3 [Arabidopsis thaliana] | 114 | 75 | 65 | 97 |
| AT5G46280 | transcription only | -3.3413666902790977 | -0.3724856766828392 | AT5G46280 | -- | GO:0000166,nucleotide binding; GO:0000347,THO complex; GO:0000727,double-strand break repair via break-induced replication; GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003697,single-stranded DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006270,DNA replication initiation; GO:0006271,DNA strand elongation involved in DNA replication; GO:0007049,cell cycle; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0042555,MCM complex; GO:1902975,mitotic DNA replication initiation; | MCM3; DNA replication licensing factor MCM3 [EC:3.6.4.12]; K02541; | NP_199440.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana] | 342 | 297 | 223 | 111 |
| AT5G46700 | transcription only | 2.7355747094191307 | -0.3667788235622996 | AT5G46700 | -- | GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009554,megasporogenesis; GO:0009734,auxin-activated signaling pathway; GO:0009933,meristem structural organization; GO:0009934,regulation of meristem structural organization; GO:0009956,radial pattern formation; GO:0010015,root morphogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0016020,membrane; GO:0016021,integral component of membrane; | -- | NP_199482.1 Tetraspanin family protein [Arabidopsis thaliana] | 154 | 174 | 81 | 86 |
| AT5G47580 | transcription only | -1.3773801249621582 | -0.10810863444044708 | AT5G47580 | -- | GO:0005739,mitochondrion; GO:0016020,membrane; | -- | NP_199569.1 transmembrane protein [Arabidopsis thaliana] | 15 | 18 | 9 | 11 |
| AT5G47970 | transcription only | 2.0437068161976977 | 0.6514507052710974 | AT5G47970 | -- | GO:0002943,tRNA dihydrouridine synthesis; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008033,tRNA processing; GO:0009524,phragmoplast; GO:0016491,oxidoreductase activity; GO:0017150,tRNA dihydrouridine synthase activity; GO:0050660,flavin adenine dinucleotide binding; | -- | NP_001078731.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | 70 | 87 | 83 | 80 |
| AT5G49100 | transcription only | -1.6570888540530453 | 0.18040985112439545 | AT5G49100 | -- | -- | -- | NP_568706.1 vitellogenin-like protein [Arabidopsis thaliana] | 130 | 97 | 88 | 80 |
| AT5G49660 | transcription only | -1.0123759295780277 | -0.12354634268930256 | AT5G49660 | -- | GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010051,xylem and phloem pattern formation; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0017046,peptide hormone binding; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0042277,peptide binding; GO:0048437,floral organ development; GO:0048831,regulation of shoot system development; GO:0051428,peptide hormone receptor binding; GO:0080113,regulation of seed growth; GO:0090548,response to nitrate starvation; GO:1901141,regulation of lignin biosynthetic process; GO:1901333,positive regulation of lateral root development; GO:1902025,nitrate import; GO:2000023,regulation of lateral root development; GO:2000280,regulation of root development; GO:2000652,regulation of secondary cell wall biogenesis; | -- | NP_199777.1 Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana] | 128 | 129 | 84 | 72 |
| AT5G49700 | transcription only | 1.175074148358365 | -0.3147885320210269 | AT5G49700 | -- | GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; | -- | NP_199781.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana] | 34 | 51 | 26 | 20 |
| AT5G51180 | transcription only | 3.856497802354824 | -0.16106172907547203 | AT5G51180 | -- | GO:0003674,molecular_function; GO:0044255,cellular lipid metabolic process; | -- | NP_568754.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 60 | 110 | 53 | 49 |
| AT5G51550 | transcription only | 1.2544441606814307 | -0.5490006062696601 | AT5G51550 | -- | GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0048046,apoplast; | -- | NP_199968.1 EXORDIUM like 3 [Arabidopsis thaliana] | 542 | 452 | 259 | 191 |
| AT5G51950 | transcription only | 1.1839687582136302 | -0.7041286926579061 | AT5G51950 | -- | GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding; | -- | NP_200008.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] | 1055 | 852 | 459 | 318 |
| AT5G53050 | transcription only | -1.873310658140759 | -0.31864780734745396 | AT5G53050 | -- | GO:0003824,catalytic activity; GO:0016020,membrane; GO:0016787,hydrolase activity; | -- | NP_001032065.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 55 | 52 | 27 | 29 |
| AT5G53880 | transcription only | -1.7689019358435691 | 0.05590269378845419 | AT5G53880 | -- | GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0008150,biological_process; | -- | NP_568802.1 hypothetical protein AT5G53880 [Arabidopsis thaliana] | 106 | 69 | 71 | 49 |
| AT5G54570 | transcription only | -1.0889061575224777 | -0.5001646901885413 | AT5G54570 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102483,scopolin beta-glucosidase activity; | E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188; | NP_200268.3 beta glucosidase 41 [Arabidopsis thaliana] | 25 | 24 | 13 | 10 |
| AT5G54630 | transcription only | -1.3787113489023304 | -0.13508563572376636 | AT5G54630 | -- | GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; | -- | NP_200274.1 zinc finger protein-like protein [Arabidopsis thaliana] | 56 | 44 | 39 | 22 |
| AT5G54770 | transcription only | -2.2141080796729975 | -0.7458861187649481 | AT5G54770 | -- | GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006974,cellular response to DNA damage stimulus; GO:0008270,zinc ion binding; GO:0009228,thiamine biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016763,pentosyltransferase activity; GO:0018131,oxazole or thiazole biosynthetic process; GO:0019438,aromatic compound biosynthetic process; GO:0019904,protein domain specific binding; GO:0042803,protein homodimerization activity; GO:0044272,sulfur compound biosynthetic process; GO:0046872,metal ion binding; GO:0052837,thiazole biosynthetic process; GO:1901362,organic cyclic compound biosynthetic process; GO:1901566,organonitrogen compound biosynthetic process; | THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]; K03146; | NP_200288.1 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) [Arabidopsis thaliana] | 12932 | 12365 | 5800 | 4248 |
| AT5G55450 | transcription only | -1.8616953149055888 | -0.4798208812059597 | AT5G55450 | -- | GO:0005504,fatty acid binding; GO:0009627,systemic acquired resistance; GO:0051707,response to other organism; | -- | NP_568824.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana] | 15 | 15 | 12 | 3 |
| AT5G56120 | transcription only | 1.2188423849583456 | -0.9764958909868096 | AT5G56120 | -- | GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; GO:0008150,biological_process; GO:0016020,membrane; | -- | NP_200423.2 RNA polymerase II elongation factor [Arabidopsis thaliana] | 86 | 78 | 24 | 30 |
| AT5G56590 | transcription only | 1.7510806373945491 | 0.4650344489380174 | AT5G56590 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization; | -- | NP_200470.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana] | 69 | 58 | 66 | 50 |
| AT5G56660 | transcription only | 1.768881714131554 | 0.2864690462964509 | AT5G56660 | -- | GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0009850,auxin metabolic process; GO:0010178,IAA-amino acid conjugate hydrolase activity; GO:0010179,IAA-Ala conjugate hydrolase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; | -- | NP_200477.1 IAA-leucine resistant (ILR)-like 2 [Arabidopsis thaliana] | 12 | 29 | 29 | 7 |
| AT5G56870 | transcription only | 1.3769248450544855 | -0.30446919628972907 | AT5G56870 | -- | GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast; | -- | NP_200498.1 beta-galactosidase 4 [Arabidopsis thaliana] | 1139 | 1081 | 663 | 528 |
| AT5G57250 | transcription only | 2.2441520197377427 | -0.3072489435681446 | AT5G57250 | -- | GO:0005515,protein binding; GO:0005739,mitochondrion; | -- | BAA96948.1 salt-inducible protein-like [Arabidopsis thaliana] | 23 | 23 | 10 | 14 |
| AT5G58060 | transcription only | 1.2184150542373018 | -0.5531220369955016 | AT5G58060 | -- | GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006906,vesicle fusion; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0031982,vesicle; | YKT6; synaptobrevin homolog YKT6; K08516; | NP_001154785.1 SNARE-like superfamily protein [Arabidopsis thaliana] | 142 | 151 | 64 | 67 |
| AT5G58240 | transcription only | 1.2544362186345253 | 0.49705875544673583 | AT5G58240 | -- | GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0043530,adenosine 5'-monophosphoramidase activity; GO:0047352,adenylylsulfate-ammonia adenylyltransferase activity; GO:0047627,adenylylsulfatase activity; GO:0047710,bis(5'-adenosyl)-triphosphatase activity; | FHIT; bis(5'-adenosyl)-triphosphatase [EC:3.6.1.29]; K01522; | NP_200632.2 FRAGILE HISTIDINE TRIAD [Arabidopsis thaliana] | 44 | 35 | 49 | 26 |
| AT5G58270 | transcription only | -1.36946718688904 | -0.01607502642763557 | AT5G58270 | -- | GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0006811,ion transport; GO:0006879,cellular iron ion homeostasis; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010288,response to lead ion; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0046686,response to cadmium ion; GO:0048364,root development; GO:0050790,regulation of catalytic activity; GO:0051276,chromosome organization; GO:0055072,iron ion homeostasis; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; | ABCB7; ATP-binding cassette, subfamily B (MDR/TAP), member 7; K05662; | NP_200635.1 ABC transporter of the mitochondrion 3 [Arabidopsis thaliana] | 281 | 170 | 140 | 147 |
| AT5G58300 | transcription only | -1.1518038734663216 | -0.3358346930450979 | AT5G58300 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; | -- | NP_001119458.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 112 | 113 | 64 | 54 |
| AT5G58640 | transcription only | 1.357173317969941 | -0.17099148585872764 | AT5G58640 | -- | GO:0004791,thioredoxin-disulfide reductase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification; | SELENOT; thioredoxin reductase-like selenoprotein T; K22366; | NP_200672.1 Selenoprotein, Rdx type [Arabidopsis thaliana] | 153 | 101 | 78 | 69 |
| AT5G58650 | transcription only | 1.1870446669634886 | 0.4169809487830351 | AT5G58650 | -- | GO:0005576,extracellular region; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0009658,chloroplast organization; GO:0042127,regulation of cell population proliferation; | -- | NP_200673.1 plant peptide containing sulfated tyrosine 1 [Arabidopsis thaliana] | 49 | 23 | 38 | 25 |
| AT5G59010 | transcription only | -1.172911258925274 | -0.4666884468073416 | AT5G59010 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; | -- | NP_200709.2 kinase with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | 234 | 186 | 132 | 72 |
| AT5G60360 | transcription only | -1.0401864824086158 | -0.14689161030243214 | AT5G60360 | -- | GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0007568,aging; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0099503,secretory vesicle; | CTSH; cathepsin H [EC:3.4.22.16]; K01366; | NP_568921.1 aleurain-like protease [Arabidopsis thaliana] | 3719 | 3168 | 2324 | 1790 |
| AT5G61260 | transcription only | -2.0114077988920593 | -0.37349556425161445 | AT5G61260 | -- | GO:0005516,calmodulin binding; GO:0008150,biological_process; | -- | NP_001318853.1 Plant calmodulin-binding protein-like protein [Arabidopsis thaliana] | 29 | 19 | 12 | 12 |
| AT5G61480 | transcription only | -1.2521284658798886 | 0.19699916109614893 | AT5G61480 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0010089,xylem development; GO:0010223,secondary shoot formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0051301,cell division; GO:0106310,protein serine kinase activity; | -- | NP_200956.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 349 | 404 | 318 | 257 |
| AT5G62680 | transcription only | -1.5025108660447122 | -0.554922030568508 | AT5G62680 | -- | GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090448,glucosinolate:proton symporter activity; GO:0090449,phloem glucosinolate loading; GO:0098656,anion transmembrane transport; GO:1901349,glucosinolate transport; | -- | NP_201074.1 Major facilitator superfamily protein [Arabidopsis thaliana] | 759 | 612 | 342 | 273 |
| AT5G63780 | transcription only | -1.1380552900635406 | 0.2398233749049005 | AT5G63780 | -- | GO:0008270,zinc ion binding; GO:0010492,maintenance of shoot apical meristem identity; GO:0016020,membrane; GO:0048507,meristem development; | -- | NP_001331890.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana] | 128 | 94 | 89 | 82 |
| AT5G63890 | transcription only | 2.7499429814133367 | 0.5015119013920845 | AT5G63890 | -- | GO:0000105,histidine biosynthetic process; GO:0004399,histidinol dehydrogenase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009411,response to UV; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046872,metal ion binding; GO:0051287,NAD binding; | hisD; histidinol dehydrogenase [EC:1.1.1.23]; K00013; | NP_568981.2 histidinol dehydrogenase [Arabidopsis thaliana] | 167 | 165 | 175 | 137 |
| AT5G64000 | transcription only | -1.756790503043215 | -0.5043905682031897 | AT5G64000 | -- | GO:0000103,sulfate assimilation; GO:0003824,catalytic activity; GO:0004441,inositol-1,4-bisphosphate 1-phosphatase activity; GO:0006790,sulfur compound metabolic process; GO:0008152,metabolic process; GO:0008441,3'(2'),5'-bisphosphate nucleotidase activity; GO:0016312,inositol bisphosphate phosphatase activity; GO:0016787,hydrolase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046872,metal ion binding; | SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57]; K15422; | NP_201205.1 Inositol monophosphatase family protein [Arabidopsis thaliana] | 121 | 74 | 40 | 48 |
| AT5G64030 | transcription only | 1.2584041291788983 | -0.6166440737657519 | AT5G64030 | -- | GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; | -- | NP_201208.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 910 | 769 | 425 | 302 |
| AT5G64240 | transcription only | -1.7851317190617038 | -0.7368466436655867 | AT5G64240 | -- | GO:0004197,cysteine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; | -- | NP_851262.1 metacaspase 3 [Arabidopsis thaliana] | 170 | 124 | 65 | 51 |
| AT5G64620 | transcription only | 1.181754629840376 | -0.40794508149615066 | AT5G64620 | -- | GO:0004857,enzyme inhibitor activity; GO:0005773,vacuole; GO:0043086,negative regulation of catalytic activity; | -- | NP_201267.1 cell wall / vacuolar inhibitor of fructosidase 2 [Arabidopsis thaliana] | 280 | 151 | 100 | 108 |
| AT5G64770 | transcription only | -1.796221272108247 | 0.7606750170385498 | AT5G64770 | -- | GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005783,endoplasmic reticulum; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0008284,positive regulation of cell population proliferation; GO:0009733,response to auxin; GO:0009786,regulation of asymmetric cell division; GO:0009958,positive gravitropism; GO:0010082,regulation of root meristem growth; GO:0022622,root system development; GO:0030154,cell differentiation; GO:0032880,regulation of protein localization; GO:0048527,lateral root development; GO:2000012,regulation of auxin polar transport; GO:2000023,regulation of lateral root development; GO:2000067,regulation of root morphogenesis; GO:2000280,regulation of root development; | -- | NP_201282.1 root meristem growth factor [Arabidopsis thaliana] | 10 | 7 | 11 | 8 |
| AT5G64920 | transcription only | -1.1857608088461975 | 0.9728124534299024 | AT5G64920 | -- | GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; | -- | NP_201297.1 COP1-interacting protein 8 [Arabidopsis thaliana] | 38 | 38 | 40 | 56 |
| AT5G65460 | transcription only | -1.2812356033418424 | 0.4183328514119166 | AT5G65460 | -- | GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007017,microtubule-based process; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement; GO:0015630,microtubule cytoskeleton; GO:0016020,membrane; GO:0031022,nuclear migration along microfilament; | -- | NP_001331384.1 kinesin like protein for actin based chloroplast movement 2 [Arabidopsis thaliana] | 138 | 156 | 137 | 123 |
| AT5G65990 | transcription only | 1.5793022824353815 | -0.4153910319308858 | AT5G65990 | -- | GO:0003333,amino acid transmembrane transport; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006865,amino acid transport; GO:0015173,aromatic amino acid transmembrane transporter activity; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015801,aromatic amino acid transport; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport; | SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209; | NP_201400.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana] | 162 | 175 | 93 | 75 |
| AT5G67250 | transcription only | -1.475142926668756 | 0.4856356086318493 | AT5G67250 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; | -- | NP_569047.1 SKP1/ASK1-interacting protein 2 [Arabidopsis thaliana] | 112 | 122 | 106 | 109 |
| AT5G67290 | transcription only | -1.1591892404750797 | -0.02310717964471544 | AT5G67290 | -- | GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity; | -- | NP_201530.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana] | 74 | 41 | 37 | 36 |
| AT5G67310 | transcription only | 1.6675714458393625 | 0.13416434666636515 | AT5G67310 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_201532.2 cytochrome P450, family 81, subfamily G, polypeptide 1 [Arabidopsis thaliana] | 13 | 11 | 13 | 5 |
| AT5G67360 | transcription only | -1.08908435672817 | -0.2121267938671768 | AT5G67360 | -- | GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0010214,seed coat development; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0048359,mucilage metabolic process involved in seed coat development; GO:0080001,mucilage extrusion from seed coat; GO:0099503,secretory vesicle; | -- | NP_569048.1 Subtilase family protein [Arabidopsis thaliana] | 3188 | 2919 | 1973 | 1522 |
| AT5G67490 | transcription only | -1.8977943875670205 | 0.04948154168365045 | AT5G67490 | -- | GO:0005739,mitochondrion; GO:0006099,tricarboxylic acid cycle; GO:0034553,mitochondrial respiratory chain complex II assembly; | -- | NP_569049.1 succinate dehydrogenase assembly factor [Arabidopsis thaliana] | 686 | 603 | 447 | 426 |
| AT1G01130 | translation only | 0.5629389009964095 | -1.773887644855576 | AT1G01130 | -- | -- | -- | NP_171621.2 CBL-interacting Serine/Threonine-kinase [Arabidopsis thaliana] | 24 | 20 | 8 | 1 |
| AT1G01750 | translation only | -0.15034505049512462 | -1.4314559162396254 | AT1G01750 | -- | GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0030042,actin filament depolymerization; GO:0051015,actin filament binding; | CFL; cofilin; K05765; | NP_171680.1 actin depolymerizing factor 11 [Arabidopsis thaliana] | 6 | 13 | 4 | 1 |
| AT1G03130 | translation only | -0.0839046151033104 | -1.0707848724352749 | AT1G03130 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; | psaD; photosystem I subunit II; K02692; | NP_171812.1 photosystem I subunit D-2 [Arabidopsis thaliana] | 636 | 741 | 247 | 191 |
| AT1G03870 | translation only | -0.1603379651401728 | -1.5734049638738212 | AT1G03870 | -- | GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0099503,secretory vesicle; | -- | NP_563692.1 FASCICLIN-like arabinoogalactan 9 [Arabidopsis thaliana] | 65 | 52 | 15 | 11 |
| AT1G06260 | translation only | -0.6500799469938042 | -1.2930568913951457 | AT1G06260 | -- | GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; | -- | NP_563764.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana] | 468 | 511 | 154 | 113 |
| AT1G06560 | translation only | -0.3786394888486809 | 1.0112421501228082 | AT1G06560 | -- | GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; | -- | NP_172143.3 NOL1/NOP2/sun family protein [Arabidopsis thaliana] | 48 | 46 | 62 | 62 |
| AT1G08590 | translation only | -0.3618932347586372 | -1.1886973779027736 | AT1G08590 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0106310,protein serine kinase activity; | -- | NP_172335.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana] | 21 | 10 | 6 | 3 |
| AT1G09340 | translation only | -0.6316790751016567 | -1.247884890178596 | AT1G09340 | -- | GO:0000272,polysaccharide catabolic process; GO:0000325,plant-type vacuole; GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005975,carbohydrate metabolic process; GO:0005996,monosaccharide metabolic process; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010297,heteropolysaccharide binding; GO:0010319,stromule; GO:0010468,regulation of gene expression; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0042631,cellular response to water deprivation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast; | -- | NP_001322308.1 chloroplast RNA binding protein [Arabidopsis thaliana] | 691 | 648 | 211 | 163 |
| AT1G10070 | translation only | -0.00325403912410146 | -1.131529463043501 | AT1G10070 | -- | GO:0003824,catalytic activity; GO:0004084,branched-chain-amino-acid transaminase activity; GO:0005737,cytoplasm; GO:0008483,transaminase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009081,branched-chain amino acid metabolic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009097,isoleucine biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009099,valine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0050048,L-leucine:2-oxoglutarate aminotransferase activity; GO:0052654,L-leucine transaminase activity; GO:0052655,L-valine transaminase activity; GO:0052656,L-isoleucine transaminase activity; GO:0071669,plant-type cell wall organization or biogenesis; | E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42]; K00826; | NP_001031015.1 branched-chain amino acid transaminase 2 [Arabidopsis thaliana] | 32 | 30 | 6 | 12 |
| AT1G10395 | translation only | 0.3761439736174939 | 1.6048510665168054 | AT1G10395 | -- | -- | -- | NP_001320683.1 hypothetical protein AT1G10395 [Arabidopsis thaliana] | 25 | 20 | 44 | 45 |
| AT1G13110 | translation only | 0.8008576739909383 | 2.780997169682863 | AT1G13110 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_172770.1 cytochrome P450, family 71 subfamily B, polypeptide 7 [Arabidopsis thaliana] | 7 | 6 | 18 | 38 |
| AT1G13140 | translation only | -0.01799915338949222 | -1.027720533575312 | AT1G13140 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_172773.4 cytochrome P450, family 86, subfamily C, polypeptide 3 [Arabidopsis thaliana] | 251 | 235 | 77 | 79 |
| AT1G14370 | translation only | -0.04886574795260545 | 1.0748626988195067 | AT1G14370 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030957,Tat protein binding; GO:0106310,protein serine kinase activity; GO:1900426,positive regulation of defense response to bacterium; | -- | NP_172889.1 protein kinase 2A [Arabidopsis thaliana] | 9 | 13 | 17 | 14 |
| AT1G15040 | translation only | -0.4182594497341805 | -1.038166530998748 | AT1G15040 | -- | GO:0005575,cellular_component; GO:0006541,glutamine metabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:2000032,regulation of secondary shoot formation; | -- | NP_850943.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana] | 204 | 203 | 76 | 56 |
| AT1G15520 | translation only | 0.30912961697925195 | -1.0776649648522754 | AT1G15520 | -- | GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010193,response to ozone; GO:0010496,intercellular transport; GO:0015562,efflux transmembrane transporter activity; GO:0015692,lead ion transport; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042631,cellular response to water deprivation; GO:0046865,terpenoid transport; GO:0048581,negative regulation of post-embryonic development; GO:0055085,transmembrane transport; GO:0080168,abscisic acid transport; GO:0090332,stomatal closure; GO:0098657,import into cell; GO:0098739,import across plasma membrane; GO:0140359,ABC-type transporter activity; | ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711; | NP_173005.1 pleiotropic drug resistance 12 [Arabidopsis thaliana] | 43 | 50 | 20 | 10 |
| AT1G16000 | translation only | 0.8948389756041502 | 1.018997984939637 | AT1G16000 | -- | GO:0009527,plastid outer membrane; GO:0016020,membrane; | -- | VYS46232.1 unnamed protein product [Arabidopsis thaliana] | 56 | 37 | 66 | 57 |
| AT1G18710 | translation only | 0.6267125312313271 | 1.4489516923511412 | AT1G18710 | MYB | GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0010214,seed coat development; GO:0140547,acquisition of seed longevity; | -- | NP_173306.1 myb domain protein 47 [Arabidopsis thaliana] | 5 | 4 | 8 | 8 |
| AT1G21160 | translation only | 0.5788296037325851 | 3.899256629640041 | AT1G21160 | -- | GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process; | EIF5B; translation initiation factor 5B; K03243; | NP_173540.2 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana] | 37 | 16 | 296 | 222 |
| AT1G22050 | translation only | -0.4972289879491185 | -1.55491409761166 | AT1G22050 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane; | -- | NP_173624.1 membrane-anchored ubiquitin-fold protein 6 precursor [Arabidopsis thaliana] | 15 | 12 | 3 | 3 |
| AT1G23560 | translation only | 0.9615089161675388 | -1.0310044502717222 | AT1G23560 | -- | -- | -- | NP_001320352.1 OBP32pep, putative (DUF220) [Arabidopsis thaliana] | 57 | 53 | 16 | 19 |
| AT1G24030 | translation only | -0.1737710318663599 | -1.4256868003076033 | AT1G24030 | -- | GO:0000166,nucleotide binding; GO:0000976,transcription cis-regulatory region binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; | -- | NP_173814.2 Protein kinase superfamily protein [Arabidopsis thaliana] | 27 | 7 | 4 | 4 |
| AT1G24290 | translation only | 0.1025152124322944 | -1.381914529021525 | AT1G24290 | -- | GO:0000731,DNA synthesis involved in DNA repair; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006261,DNA-templated DNA replication; GO:0008047,enzyme activator activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0050790,regulation of catalytic activity; | ycaJ; putative ATPase; K07478; | NP_173839.1 AAA-type ATPase family protein [Arabidopsis thaliana] | 20 | 17 | 9 | 1 |
| AT1G24600 | translation only | -0.5919809935954766 | -1.8507052843306813 | AT1G24600 | -- | -- | -- | NP_564221.1 hypothetical protein AT1G24600 [Arabidopsis thaliana] | 10 | 11 | 3 | 1 |
| AT1G25550 | translation only | 0.4414648473348607 | -1.642034343404085 | AT1G25550 | G2-like | GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016036,cellular response to phosphate starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0071456,cellular response to hypoxia; GO:0080090,regulation of primary metabolic process; | -- | NP_001323092.1 myb-like transcription factor family protein [Arabidopsis thaliana] | 22 | 23 | 8 | 2 |
| AT1G27640 | translation only | 0.01797336651658607 | 1.7231990994580315 | AT1G27640 | -- | GO:0003674,molecular_function; | -- | NP_174085.1 hypothetical protein AT1G27640 [Arabidopsis thaliana] | 14 | 17 | 47 | 23 |
| AT1G29200 | translation only | 0.906885208065432 | -1.1383715050834866 | AT1G29200 | -- | GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; | -- | NP_001322313.1 O-fucosyltransferase family protein [Arabidopsis thaliana] | 14 | 14 | 8 | 1 |
| AT1G30800 | translation only | 0.3813308561970862 | 1.7330873344302642 | AT1G30800 | -- | GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; | -- | NP_174366.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana] | 6 | 4 | 8 | 13 |
| AT1G32630 | translation only | -0.5024255034557408 | 1.1815338492861769 | AT1G32630 | -- | GO:0003674,molecular_function; | -- | NP_001322452.1 FAM50A-like protein [Arabidopsis thaliana] | 5 | 7 | 9 | 9 |
| AT1G34110 | translation only | -0.1436441521724023 | 1.2126748546266295 | AT1G34110 | -- | GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0010074,maintenance of meristem identity; GO:0010082,regulation of root meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; | -- | NP_001320719.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana] | 16 | 22 | 28 | 30 |
| AT1G48100 | translation only | 0.5007613792421419 | -1.32368180773485 | AT1G48100 | -- | GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009831,plant-type cell wall modification involved in multidimensional cell growth; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0071555,cell wall organization; | -- | NP_175244.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana] | 218 | 182 | 68 | 39 |
| AT1G50630 | translation only | -0.01482675785933124 | 1.1112375882749932 | AT1G50630 | -- | GO:0003674,molecular_function; GO:0016020,membrane; | -- | NP_564578.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana] | 21 | 26 | 39 | 29 |
| AT1G52618 | translation only | 0.36569041008217945 | 2.6510473808088073 | AT1G52618 | -- | GO:0003674,molecular_function; | -- | NP_001077705.1 hypothetical protein AT1G52618 [Arabidopsis thaliana] | 4 | 1 | 10 | 10 |
| AT1G56010 | translation only | -0.11228910442568758 | -1.040395770001864 | AT1G56010 | NAC | GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009734,auxin-activated signaling pathway; GO:0048527,lateral root development; | -- | NP_175997.1 NAC domain containing protein 1 [Arabidopsis thaliana] | 40 | 21 | 9 | 10 |
| AT1G65240 | translation only | -0.8786716657395238 | -1.0089969747889147 | AT1G65240 | -- | GO:0004190,aspartic-type endopeptidase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009860,pollen tube growth; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030163,protein catabolic process; GO:0090406,pollen tube; | -- | NP_176703.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana] | 50 | 55 | 15 | 19 |
| AT1G68725 | translation only | 0.20955573580304748 | -1.123152997613274 | AT1G68725 | -- | GO:0005886,plasma membrane; GO:0016020,membrane; | -- | NP_177041.3 arabinogalactan protein 19 [Arabidopsis thaliana] | 33 | 32 | 18 | 3 |
| AT1G68870 | translation only | -0.9028652658212366 | -1.6541641295758642 | AT1G68870 | -- | GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009690,cytokinin metabolic process; GO:0009691,cytokinin biosynthetic process; GO:0009736,cytokinin-activated signaling pathway; | -- | NP_177053.1 SOB five-like 2 [Arabidopsis thaliana] | 24 | 19 | 5 | 4 |
| AT1G71170 | translation only | -0.4720479779982275 | -1.0578643501664329 | AT1G71170 | -- | GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding; | HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020; | NP_565013.2 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] | 286 | 230 | 83 | 79 |
| AT1G72300 | translation only | 0.7177930252805482 | -1.7152474417512802 | AT1G72300 | -- | GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004888,transmembrane signaling receptor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009826,unidimensional cell growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031347,regulation of defense response; GO:0042802,identical protein binding; GO:0045851,pH reduction; GO:0106310,protein serine kinase activity; | -- | CAD5316993.1 unnamed protein product [Arabidopsis thaliana] | 25 | 30 | 5 | 6 |
| AT1G73880 | translation only | 0.4154610004102053 | -1.055540327727133 | AT1G73880 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity; | -- | NP_177529.2 UDP-glucosyl transferase 89B1 [Arabidopsis thaliana] | 148 | 125 | 50 | 37 |
| AT1G75300 | translation only | -0.26900562925755633 | -1.065082103681521 | AT1G75300 | -- | GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity; | PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050; | NP_177665.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana] | 460 | 435 | 128 | 150 |
| AT1G75960 | translation only | -0.7874878605326131 | -1.8573288506412335 | AT1G75960 | -- | GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity; | -- | NP_177724.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] | 48 | 85 | 15 | 10 |
| AT1G76810 | translation only | 0.02317909899437118 | -1.5621505676853098 | AT1G76810 | -- | GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; | EIF5B; translation initiation factor 5B; K03243; | NP_177807.3 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana] | 269 | 337 | 69 | 67 |
| AT1G77280 | translation only | -0.4506314549875496 | -1.5963359834549398 | AT1G77280 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity; | -- | NP_001319394.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana] | 51 | 47 | 9 | 12 |
| AT1G78980 | translation only | -0.5274744172754527 | -1.1012792731345455 | AT1G78980 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation; | -- | NP_178019.2 STRUBBELIG-receptor family 5 [Arabidopsis thaliana] | 5 | 15 | 7 | 0 |
| AT1G80320 | translation only | -0.07237444342377339 | -2.312631422505069 | AT1G80320 | -- | GO:0051213,dioxygenase activity; | -- | NP_178148.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana] | 35 | 14 | 1 | 5 |
| AT1G80840 | translation only | -0.3756412411165262 | -1.7306379621952448 | AT1G80840 | WRKY | GO:0000976,transcription cis-regulatory region binding; GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009611,response to wounding; GO:0009751,response to salicylic acid; GO:0031347,regulation of defense response; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0050832,defense response to fungus; | -- | NP_178199.1 WRKY DNA-binding protein 40 [Arabidopsis thaliana] | 18 | 10 | 0 | 5 |
| AT2G01860 | translation only | -0.6103581367004604 | 1.140279733374839 | AT2G01860 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; | -- | NP_178295.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] | 12 | 10 | 23 | 10 |
| AT2G02500 | translation only | -0.08307641380335153 | -1.597519370639502 | AT2G02500 | -- | GO:0003824,catalytic activity; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0050518,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; GO:0070567,cytidylyltransferase activity; | ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]; K00991; | NP_001325418.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana] | 66 | 49 | 14 | 11 |
| AT2G04030 | translation only | 0.518142621150611 | 1.0282486001367468 | AT2G04030 | -- | GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009704,de-etiolation; GO:0009941,chloroplast envelope; GO:0010157,response to chlorate; GO:0015031,protein transport; GO:0016887,ATP hydrolysis activity; GO:0042803,protein homodimerization activity; GO:0045037,protein import into chloroplast stroma; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone; | HSP90B, TRA1; heat shock protein 90kDa beta; K09487; | NP_178487.1 Chaperone protein htpG family protein [Arabidopsis thaliana] | 1797 | 1654 | 2745 | 1945 |
| AT2G04380 | translation only | 0.3222749859436793 | 1.9074457464490595 | AT2G04380 | -- | GO:0008150,biological_process; | -- | NP_178519.1 hypothetical protein AT2G04380 [Arabidopsis thaliana] | 73 | 44 | 184 | 108 |
| AT2G16910 | translation only | 0.4298436583919804 | -1.056689735698413 | AT2G16910 | bHLH | GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0043565,sequence-specific DNA binding; GO:0046983,protein dimerization activity; GO:0048658,anther wall tapetum development; | -- | NP_179283.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana] | 488 | 462 | 165 | 137 |
| AT2G19330 | translation only | 0.02750315853359619 | 1.0446694593785917 | AT2G19330 | -- | GO:0005515,protein binding; GO:0008150,biological_process; | -- | NP_179523.1 plant intracellular ras group-related LRR 6 [Arabidopsis thaliana] | 6 | 4 | 10 | 4 |
| AT2G21180 | translation only | 0.3557709180073429 | -1.053649918871714 | AT2G21180 | -- | GO:0016020,membrane; | -- | NP_565499.1 transmembrane protein [Arabidopsis thaliana] | 96 | 70 | 26 | 26 |
| AT2G23670 | translation only | -0.5465711153258874 | -1.0008881909684266 | AT2G23670 | -- | GO:0003674,molecular_function; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; | -- | NP_565556.1 homolog of Synechocystis YCF37 [Arabidopsis thaliana] | 262 | 253 | 103 | 69 |
| AT2G24230 | translation only | -0.9934645228236468 | -1.085684319319103 | AT2G24230 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; | -- | NP_850049.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 117 | 87 | 34 | 29 |
| AT2G24970 | translation only | -0.08131786765008246 | 1.09518131810082 | AT2G24970 | -- | GO:0000278,mitotic cell cycle; GO:0000940,outer kinetochore; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005876,spindle microtubule; GO:0007059,chromosome segregation; GO:0008017,microtubule binding; GO:0051301,cell division; | -- | NP_565581.1 spindle/kinetochore-associated protein [Arabidopsis thaliana] | 5 | 5 | 7 | 7 |
| AT2G25280 | translation only | 0.692749075882493 | -1.0650387188014143 | AT2G25280 | -- | -- | -- | NP_565590.1 AmmeMemoRadiSam system protein B [Arabidopsis thaliana] | 187 | 145 | 78 | 30 |
| AT2G27330 | translation only | -0.2091753941933214 | 1.336613450228374 | AT2G27330 | -- | GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0008150,biological_process; | -- | NP_565646.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 10 | 2 | 9 | 10 |
| AT2G28440 | translation only | -0.05928355087066585 | -1.1591557925718678 | AT2G28440 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; | -- | NP_180411.1 proline-rich family protein [Arabidopsis thaliana] | 16 | 8 | 4 | 3 |
| AT2G29540 | translation only | -0.36233340411914033 | 1.0868449844649593 | AT2G29540 | -- | GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005515,protein binding; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0046983,protein dimerization activity; | RPC19, POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2; K03020; | NP_001031443.1 RNApolymerase 14 kDa subunit [Arabidopsis thaliana] | 10 | 21 | 27 | 18 |
| AT2G32890 | translation only | -0.0057355576880199 | -1.11951149788046 | AT2G32890 | -- | GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0007267,cell-cell signaling; GO:0019722,calcium-mediated signaling; GO:0048046,apoplast; | -- | NP_180848.1 RALF-like 17 [Arabidopsis thaliana] | 43 | 61 | 23 | 10 |
| AT2G33060 | translation only | 0.02031850746731843 | 1.0433143842263652 | AT2G33060 | -- | GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane; | -- | NP_180865.2 receptor like protein 27 [Arabidopsis thaliana] | 12 | 12 | 9 | 22 |
| AT2G33320 | translation only | -0.5319696352037603 | -1.1846121934881242 | AT2G33320 | -- | GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006952,defense response; | -- | NP_180890.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana] | 53 | 45 | 13 | 15 |
| AT2G36790 | translation only | -0.3267925924464566 | 1.826681874600901 | AT2G36790 | -- | GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; | UGT73C6; flavonol-3-O-L-rhamnoside-7-O-glucosyltransferase [EC:2.4.1.-]; K22771; | NP_181217.1 UDP-glucosyl transferase 73C6 [Arabidopsis thaliana] | 11 | 12 | 19 | 33 |
| AT2G36970 | translation only | 0.4805163808564617 | -1.0229145945608105 | AT2G36970 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; | -- | NP_181234.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 39 | 36 | 11 | 13 |
| AT2G37480 | translation only | 0.14942325977382143 | 1.5069097235722215 | AT2G37480 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; | -- | NP_850283.1 hypothetical protein AT2G37480 [Arabidopsis thaliana] | 56 | 68 | 136 | 100 |
| AT2G40640 | translation only | 0.22597934786558535 | 1.1070663181369682 | AT2G40640 | -- | GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; | -- | NP_850332.1 RING/U-box superfamily protein [Arabidopsis thaliana] | 30 | 8 | 32 | 21 |
| AT2G41750 | translation only | -0.3840046968899238 | -1.1218524914149526 | AT2G41750 | -- | GO:0008033,tRNA processing; GO:0016432,tRNA-uridine aminocarboxypropyltransferase activity; GO:0016740,transferase activity; | yfiP; DTW domain-containing protein; K05812; | NP_181706.2 DTW domain-containing protein [Arabidopsis thaliana] | 12 | 7 | 5 | 1 |
| AT2G41760 | translation only | 0.696460914758023 | 1.9236163480408677 | AT2G41760 | -- | GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response; GO:0008418,protein-N-terminal asparagine amidohydrolase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0042742,defense response to bacterium; GO:0070773,protein-N-terminal glutamine amidohydrolase activity; GO:1901183,positive regulation of camalexin biosynthetic process; | NTAQ1; protein N-terminal glutamine amidohydrolase [EC:3.5.1.122]; K21286; | NP_565959.1 amino-terminal glutamine amidohydrolase [Arabidopsis thaliana] | 5 | 8 | 18 | 15 |
| AT2G42270 | translation only | 0.47470156675724046 | -1.391589600743725 | AT2G42270 | -- | GO:0000166,nucleotide binding; GO:0000388,spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; | SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]; K12854; | NP_181756.1 U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] | 26 | 29 | 8 | 6 |
| AT2G42940 | translation only | -0.5381307203462943 | -2.395121473864044 | AT2G42940 | -- | GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010208,pollen wall assembly; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010529,negative regulation of transposition; GO:0031490,chromatin DNA binding; GO:0035067,negative regulation of histone acetylation; GO:1900111,positive regulation of histone H3-K9 dimethylation; | -- | NP_181822.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana] | 49 | 55 | 6 | 7 |
| AT2G43350 | translation only | 0.08514407429206594 | -1.0504784178074422 | AT2G43350 | -- | GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0016491,oxidoreductase activity; GO:0042542,response to hydrogen peroxide; GO:0042631,cellular response to water deprivation; GO:0098869,cellular oxidant detoxification; GO:0110165,cellular anatomical entity; | gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9]; K00432; | NP_001189742.1 glutathione peroxidase 3 [Arabidopsis thaliana] | 33 | 27 | 10 | 9 |
| AT2G43540 | translation only | -0.8888696527083182 | 1.8366566028132296 | AT2G43540 | -- | GO:0016020,membrane; | -- | NP_566001.1 transmembrane protein [Arabidopsis thaliana] | 11 | 5 | 25 | 13 |
| AT2G43640 | translation only | 0.3808001460171101 | 1.0760320180348248 | AT2G43640 | -- | GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0030942,endoplasmic reticulum signal peptide binding; GO:0045047,protein targeting to ER; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex; | SRP14; signal recognition particle subunit SRP14; K03104; | NP_001189744.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana] | 29 | 34 | 57 | 33 |
| AT2G46200 | translation only | -0.28773097526423347 | 1.347417702602416 | AT2G46200 | -- | GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:1990904,ribonucleoprotein complex; | -- | NP_850448.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana] | 25 | 13 | 25 | 36 |
| AT2G46910 | translation only | -0.9357656837648444 | -1.280908377029869 | AT2G46910 | -- | GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; | -- | NP_566091.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] | 134 | 152 | 47 | 32 |
| AT2G47000 | translation only | -0.34319037077244635 | 1.3226919800655943 | AT2G47000 | -- | GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0009630,gravitropism; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009735,response to cytokinin; GO:0009926,auxin polar transport; GO:0010315,auxin export across the plasma membrane; GO:0010328,auxin influx transmembrane transporter activity; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010540,basipetal auxin transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0060919,auxin import into cell; GO:0140359,ABC-type transporter activity; | ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658; | NP_001323911.1 ATP binding cassette subfamily B4 [Arabidopsis thaliana] | 23 | 3 | 22 | 19 |
| AT2G47780 | translation only | 0.758134520814643 | 2.0034067002069573 | AT2G47780 | -- | GO:0005811,lipid droplet; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation; | -- | NP_182299.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana] | 5 | 7 | 12 | 19 |
| AT3G01430 | translation only | 0.7616336550291816 | -1.283292548855654 | AT3G01430 | -- | -- | -- | NP_186792.1 NHL domain protein [Arabidopsis thaliana] | 24 | 8 | 8 | 1 |
| AT3G04690 | translation only | -0.4433531123629965 | -1.8663175055662111 | AT3G04690 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation; GO:0090404,pollen tube tip; GO:0106310,protein serine kinase activity; | -- | NP_187120.1 Malectin/receptor-like protein kinase family protein [Arabidopsis thaliana] | 16 | 18 | 2 | 4 |
| AT3G05800 | translation only | -0.3365245675398342 | 1.109015241463749 | AT3G05800 | -- | GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity; | -- | NP_566260.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 [Arabidopsis thaliana] | 44 | 46 | 67 | 61 |
| AT3G06830 | translation only | -0.5206810765842771 | -1.1021267132849348 | AT3G06830 | -- | GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; GO:0090406,pollen tube; | E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051; | NP_187339.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana] | 32 | 45 | 13 | 11 |
| AT3G09550 | translation only | 0.37065070802436473 | -1.7622667976424722 | AT3G09550 | -- | GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane; | -- | NP_001319511.1 Ankyrin repeat family protein [Arabidopsis thaliana] | 37 | 45 | 8 | 8 |
| AT3G10040 | translation only | -0.9813993969587576 | -1.3500379476280358 | AT3G10040 | Trihelix | GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010629,negative regulation of gene expression; GO:0071456,cellular response to hypoxia; GO:1900037,regulation of cellular response to hypoxia; | -- | NP_187615.2 sequence-specific DNA binding transcription factor [Arabidopsis thaliana] | 37 | 21 | 15 | 1 |
| AT3G11570 | translation only | -0.5892501576290986 | -2.147269842836203 | AT3G11570 | -- | GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; | -- | NP_187764.1 TRICHOME BIREFRINGENCE-LIKE 8 [Arabidopsis thaliana] | 15 | 17 | 4 | 1 |
| AT3G13000 | translation only | 0.5945975982410986 | 1.0186936939160949 | AT3G13000 | -- | GO:0000325,plant-type vacuole; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; | -- | NP_001327605.1 ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana] | 46 | 17 | 44 | 38 |
| AT3G14210 | translation only | -0.9296959391404972 | 2.074657724772688 | AT3G14210 | -- | GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009625,response to insect; GO:0009941,chloroplast envelope; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle; | -- | NP_188037.1 GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana] | 536 | 601 | 1877 | 1333 |
| AT3G15352 | translation only | -0.5322606266399025 | 1.075540138496692 | AT3G15352 | -- | GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005758,mitochondrial intermembrane space; GO:0009617,response to bacterium; GO:0016020,membrane; GO:0016531,copper chaperone activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding; | COX17; cytochrome c oxidase assembly protein subunit 17; K02260; | NP_566508.1 cytochrome c oxidase 17 [Arabidopsis thaliana] | 16 | 1 | 20 | 4 |
| AT3G16400 | translation only | -0.7788756082464202 | -1.228874799161474 | AT3G16400 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0030246,carbohydrate binding; GO:0050790,regulation of catalytic activity; GO:0080027,response to herbivore; GO:0080028,nitrile biosynthetic process; | -- | NP_001030709.1 nitrile specifier protein 1 [Arabidopsis thaliana] | 29 | 33 | 6 | 11 |
| AT3G16460 | translation only | 0.35400401935868053 | -2.5536278534236327 | AT3G16460 | -- | GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding; | -- | NP_188267.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana] | 23 | 30 | 3 | 3 |
| AT3G21180 | translation only | -0.06404882487273517 | -1.0360241570944304 | AT3G21180 | -- | GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009555,pollen development; GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity; | ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537; | NP_188755.2 autoinhibited Ca(2+)-ATPase 9 [Arabidopsis thaliana] | 140 | 123 | 60 | 27 |
| AT3G22680 | translation only | 0.560343271012917 | 1.494903025344886 | AT3G22680 | -- | GO:0000419,RNA polymerase V complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006306,DNA methylation; GO:0043621,protein self-association; GO:0044030,regulation of DNA methylation; GO:0070918,small regulatory ncRNA processing; | -- | NP_188907.2 RNA-DIRECTED DNA METHYLATION 1 [Arabidopsis thaliana] | 66 | 28 | 73 | 94 |
| AT3G26210 | translation only | -0.29047794514994946 | -2.0980762473749746 | AT3G26210 | -- | GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; | -- | NP_189252.1 cytochrome P450, family 71, subfamily B, polypeptide 23 [Arabidopsis thaliana] | 19 | 17 | 6 | 0 |
| AT3G26730 | translation only | 0.7464088794854442 | 1.5703084534051723 | AT3G26730 | -- | GO:0000976,transcription cis-regulatory region binding; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding; | -- | NP_189307.2 RING/U-box superfamily protein [Arabidopsis thaliana] | 152 | 151 | 299 | 291 |
| AT3G27770 | translation only | 0.6399412777262935 | -1.181246314224785 | AT3G27770 | -- | GO:0016020,membrane; | -- | NP_566825.1 plant/protein [Arabidopsis thaliana] | 49 | 56 | 18 | 13 |
| AT3G47470 | translation only | -0.7152218386282697 | -1.047834675874014 | AT3G47470 | -- | GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; | LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4; K08910; | NP_190331.3 light-harvesting chlorophyll-protein complex I subunit A4 [Arabidopsis thaliana] | 6551 | 6196 | 2122 | 1931 |
| AT3G50430 | translation only | 0.8023369820252353 | -1.717636010599028 | AT3G50430 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; | -- | NP_190612.3 golgin [Arabidopsis thaliana] | 20 | 20 | 4 | 4 |
| AT3G51070 | translation only | 0.23279286141463396 | -1.083425406399402 | AT3G51070 | -- | GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; | -- | NP_190676.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana] | 197 | 157 | 78 | 35 |
| AT3G53510 | translation only | -0.5688130611771535 | -1.0342051291696488 | AT3G53510 | -- | GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1903825,organic acid transmembrane transport; | ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681; | NP_190919.1 ABC-2 type transporter family protein [Arabidopsis thaliana] | 145 | 78 | 29 | 40 |
| AT3G57190 | translation only | 0.2625841235303856 | -1.5408699855875645 | AT3G57190 | -- | GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0003747,translation release factor activity; GO:0005515,protein binding; GO:0006415,translational termination; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0043488,regulation of mRNA stability; GO:0043565,sequence-specific DNA binding; | -- | NP_191278.2 peptide chain release factor [Arabidopsis thaliana] | 24 | 10 | 7 | 1 |
| AT3G59030 | translation only | -0.14657735890393428 | -1.2350864696893464 | AT3G59030 | -- | GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0009813,flavonoid biosynthetic process; GO:0010023,proanthocyanidin biosynthetic process; GO:0010231,maintenance of seed dormancy; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane; | -- | NP_191462.1 MATE efflux family protein [Arabidopsis thaliana] | 20 | 13 | 4 | 5 |
| AT3G59410 | translation only | 0.6944912203167259 | -1.3243383341456485 | AT3G59410 | -- | GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004694,eukaryotic translation initiation factor 2alpha kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006417,regulation of translation; GO:0006468,protein phosphorylation; GO:0006521,regulation of cellular amino acid metabolic process; GO:0009635,response to herbicide; GO:0010998,regulation of translational initiation by eIF2 alpha phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0034198,cellular response to amino acid starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0070301,cellular response to hydrogen peroxide; GO:0072755,cellular response to benomyl; GO:0080090,regulation of primary metabolic process; GO:0106310,protein serine kinase activity; GO:1990451,cellular stress response to acidic pH; | EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1]; K16196; | NP_001326041.1 protein kinase family protein [Arabidopsis thaliana] | 61 | 48 | 18 | 11 |
| AT3G61160 | translation only | 0.13810072742202056 | 1.195742516577019 | AT3G61160 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity; | -- | NP_001326846.1 Protein kinase superfamily protein [Arabidopsis thaliana] | 4 | 11 | 11 | 12 |
| AT3G61630 | translation only | -0.10850982084467448 | 2.9209945020890373 | AT3G61630 | ERF | GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development; GO:0048825,cotyledon development; | -- | NP_191722.1 cytokinin response factor 6 [Arabidopsis thaliana] | 29 | 20 | 156 | 92 |
| AT3G62420 | translation only | 0.6029903840337608 | 1.672204532361801 | AT3G62420 | bZIP | GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006971,hypotonic response; GO:0009267,cellular response to starvation; GO:0043565,sequence-specific DNA binding; GO:0045735,nutrient reservoir activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; GO:2000693,positive regulation of seed maturation; | -- | NP_191801.1 basic region/leucine zipper motif 53 [Arabidopsis thaliana] | 10 | 9 | 12 | 26 |
| AT3G63140 | translation only | -0.5710857134191537 | -1.272433527783988 | AT3G63140 | -- | GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast; | -- | NP_191873.1 chloroplast stem-loop binding protein of 41 kDa [Arabidopsis thaliana] | 711 | 596 | 210 | 149 |
| AT3G63210 | translation only | -0.702869386785295 | 1.2547230111521328 | AT3G63210 | -- | GO:0000932,P-body; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0010162,seed dormancy process; GO:0010494,cytoplasmic stress granule; GO:0019900,kinase binding; GO:0046872,metal ion binding; GO:1905582,response to mannose; | -- | NP_567143.1 mediator of aba-regulated dormancy protein (DUF581) [Arabidopsis thaliana] | 19 | 28 | 46 | 30 |
| AT4G00390 | translation only | 0.293063573643557 | -1.074549162847258 | AT4G00390 | GeBP | GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription; | -- | NP_191949.1 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana] | 26 | 10 | 6 | 5 |
| AT4G01670 | translation only | 0.4010595601273112 | 1.1699713603215602 | AT4G01670 | -- | -- | -- | NP_192076.2 hypothetical protein AT4G01670 [Arabidopsis thaliana] | 8 | 4 | 12 | 6 |
| AT4G01790 | translation only | -0.01415598093471282 | 1.5113331983446068 | AT4G01790 | -- | GO:0003674,molecular_function; GO:0005840,ribosome; GO:0008150,biological_process; | -- | NP_192088.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] | 9 | 4 | 8 | 15 |
| AT4G02520 | translation only | -0.16069052997870492 | -1.1434444115016502 | AT4G02520 | -- | GO:0000325,plant-type vacuole; GO:0002239,response to oomycetes; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009734,auxin-activated signaling pathway; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019904,protein domain specific binding; GO:0042221,response to chemical; GO:0043231,intracellular membrane-bounded organelle; GO:0043295,glutathione binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding; GO:2001147,camalexin binding; GO:2001227,quercitrin binding; | GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799; | NP_192161.1 glutathione S-transferase PHI 2 [Arabidopsis thaliana] | 50 | 54 | 27 | 6 |
| AT4G03260 | translation only | 0.3302475895565761 | 1.6277260178658122 | AT4G03260 | -- | GO:0000226,microtubule cytoskeleton organization; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008017,microtubule binding; GO:0009819,drought recovery; GO:0019901,protein kinase binding; GO:0045926,negative regulation of growth; GO:0046777,protein autophosphorylation; | -- | NP_001118925.1 Outer arm dynein light chain 1 protein [Arabidopsis thaliana] | 34 | 24 | 77 | 43 |
| AT4G09650 | translation only | -0.7072566338206722 | -1.034003713141662 | AT4G09650 | -- | GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; | ATPF1D, atpH; F-type H+-transporting ATPase subunit delta; K02113; | NP_192703.1 F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana] | 938 | 894 | 325 | 267 |
| AT4G10100 | translation only | 0.7953830791332578 | 1.01953088167919 | AT4G10100 | -- | GO:0000166,nucleotide binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0009734,auxin-activated signaling pathway; GO:0018315,molybdenum incorporation into molybdenum-molybdopterin complex; GO:0019008,molybdopterin synthase complex; GO:0030366,molybdopterin synthase activity; | MOCS2A, CNXG; molybdopterin synthase sulfur carrier subunit; K21232; | NP_001078366.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7 [Arabidopsis thaliana] | 16 | 16 | 29 | 15 |
| AT4G12080 | translation only | 0.28914877823138574 | 2.216253703948991 | AT4G12080 | -- | GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0043565,sequence-specific DNA binding; GO:0098687,chromosomal region; | -- | NP_192945.2 AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana] | 12 | 8 | 39 | 23 |
| AT4G14700 | translation only | 0.2084778241831567 | -1.905449701626212 | AT4G14700 | -- | GO:0000166,nucleotide binding; GO:0000808,origin recognition complex; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003688,DNA replication origin binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005664,nuclear origin of replication recognition complex; GO:0006260,DNA replication; GO:0006270,DNA replication initiation; GO:0006355,regulation of DNA-templated transcription; GO:0010385,double-stranded methylated DNA binding; GO:0016887,ATP hydrolysis activity; GO:0033314,mitotic DNA replication checkpoint signaling; GO:0046872,metal ion binding; | ORC1; origin recognition complex subunit 1; K02603; | NP_567440.1 origin recognition complex 1 [Arabidopsis thaliana] | 33 | 17 | 7 | 2 |
| AT4G18205 | translation only | -0.624768336367179 | 1.2382158470009317 | AT4G18205 | -- | GO:0005345,purine nucleobase transmembrane transporter activity; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport; | -- | NP_001031664.1 Nucleotide-sugar transporter family protein [Arabidopsis thaliana] | 5 | 6 | 3 | 13 |
| AT4G19000 | translation only | -0.03399014343171932 | 3.518802204567504 | AT4G19000 | -- | GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0006414,translational elongation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032784,regulation of DNA-templated transcription elongation; | -- | NP_001319989.1 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] | 2 | 1 | 10 | 12 |
| AT4G20325 | translation only | 0.5190641694770071 | -2.0257666922861515 | AT4G20325 | -- | GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006401,RNA catabolic process; GO:0032299,ribonuclease H2 complex; | RNASEH2B; ribonuclease H2 subunit B; K10744; | NP_001078412.2 ribonuclease H2 subunit B [Arabidopsis thaliana] | 16 | 19 | 5 | 1 |
| AT4G20420 | translation only | -0.3806022967703898 | -1.4061500422445083 | AT4G20420 | -- | GO:0008150,biological_process; | -- | NP_193775.1 Tapetum specific protein TAP35/TAP44 [Arabidopsis thaliana] | 246 | 200 | 62 | 49 |
| AT4G21190 | translation only | 0.3526751960133512 | 1.609066745864275 | AT4G21190 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; | -- | NP_567622.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana] | 18 | 15 | 45 | 23 |
| AT4G21310 | translation only | 0.48809917115464074 | -1.325564636110507 | AT4G21310 | -- | GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008150,biological_process; GO:0009855,determination of bilateral symmetry; GO:0016020,membrane; GO:0048366,leaf development; | -- | NP_193862.1 transmembrane protein, putative (DUF1218) [Arabidopsis thaliana] | 39 | 25 | 5 | 11 |
| AT4G26090 | translation only | -0.08715809912747527 | -1.129784150761354 | AT4G26090 | -- | GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0016020,membrane; GO:0016045,detection of bacterium; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0098542,defense response to other organism; | RPS2; disease resistance protein RPS2; K13459; | NP_194339.1 NB-ARC domain-containing disease resistance protein [Arabidopsis thaliana] | 20 | 16 | 7 | 4 |
| AT4G27860 | translation only | -0.3201038627969383 | 1.3807263624289257 | AT4G27860 | -- | GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006880,intracellular sequestering of iron ion; GO:0010168,ER body; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0071421,manganese ion transmembrane transport; | -- | NP_001190855.1 vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana] | 20 | 19 | 31 | 35 |
| AT4G29580 | translation only | -0.03273650600614617 | 2.7807010833763885 | AT4G29580 | -- | GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005829,cytosol; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process; | -- | NP_001154274.1 Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] | 5 | 2 | 16 | 15 |
| AT4G30370 | translation only | 0.8839682833172814 | 1.342503259828029 | AT4G30370 | -- | GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia; | -- | NP_194766.1 RING/U-box superfamily protein [Arabidopsis thaliana] | 6 | 3 | 9 | 6 |
| AT4G30850 | translation only | -0.2183175414172412 | -1.292758593355529 | AT4G30850 | -- | GO:0009725,response to hormone; GO:0009744,response to sucrose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0038023,signaling receptor activity; | -- | NP_194814.2 heptahelical transmembrane protein2 [Arabidopsis thaliana] | 104 | 94 | 21 | 31 |
| AT4G31020 | translation only | -0.1229275590818041 | -1.3008220736680272 | AT4G31020 | -- | GO:0008150,biological_process; GO:0008474,palmitoyl-(protein) hydrolase activity; GO:0098734,macromolecule depalmitoylation; | -- | NP_194831.3 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana] | 9 | 10 | 2 | 3 |
| AT4G33100 | translation only | 0.03028434406196991 | 1.5720970590564736 | AT4G33100 | -- | GO:0005634,nucleus; GO:0005758,mitochondrial intermembrane space; GO:0008150,biological_process; GO:0045332,phospholipid translocation; GO:0120009,intermembrane lipid transfer; GO:1990050,phosphatidic acid transfer activity; | -- | NP_195036.1 protein phosphatase [Arabidopsis thaliana] | 10 | 5 | 6 | 21 |
| AT4G33355 | translation only | -0.4116031506798325 | -1.8785337878241353 | AT4G33355 | -- | GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding; | -- | NP_680758.3 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana] | 315 | 304 | 58 | 53 |
| AT4G35420 | translation only | 0.9623998612505944 | -1.4226444924744828 | AT4G35420 | -- | GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009555,pollen development; GO:0010584,pollen exine formation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0048316,seed development; GO:0080110,sporopollenin biosynthetic process; | -- | NP_195268.2 dihydroflavonol 4-reductase-like1 [Arabidopsis thaliana] | 199 | 221 | 62 | 43 |
| AT4G36770 | translation only | -0.8613800357247935 | -1.2212296575260837 | AT4G36770 | -- | GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; | -- | NP_195395.4 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana] | 36 | 29 | 14 | 5 |
| AT4G37050 | translation only | -0.1663533023523084 | -1.2180863446720571 | AT4G37050 | -- | GO:0004620,phospholipase activity; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009737,response to abscisic acid; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0047372,acylglycerol lipase activity; | -- | NP_195422.3 PATATIN-like protein 4 [Arabidopsis thaliana] | 10 | 13 | 6 | 1 |
| AT4G37560 | translation only | -0.22389500746282393 | -1.7409758251205791 | AT4G37560 | -- | GO:0005829,cytosol; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; | E3.5.1.49; formamidase [EC:3.5.1.49]; K01455; | NP_568029.1 Acetamidase/Formamidase family protein [Arabidopsis thaliana] | 20 | 25 | 5 | 4 |
| AT4G38540 | translation only | -0.10841928227190654 | 1.3247388387999015 | AT4G38540 | -- | GO:0002239,response to oomycetes; GO:0004497,monooxygenase activity; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity; GO:0071949,FAD binding; | -- | NP_195566.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] | 2 | 10 | 8 | 12 |
| AT4G39030 | translation only | 0.00559659563723979 | -1.1092614353423729 | AT4G39030 | -- | GO:0002376,immune system process; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0009697,salicylic acid biosynthetic process; GO:0009751,response to salicylic acid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031348,negative regulation of defense response; GO:0031969,chloroplast membrane; GO:0042742,defense response to bacterium; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0045087,innate immune response; GO:0055085,transmembrane transport; | -- | NP_195614.2 MATE efflux family protein [Arabidopsis thaliana] | 54 | 58 | 22 | 13 |
| AT4G39270 | translation only | -0.4997782660297459 | -1.4610782888006622 | AT4G39270 | -- | GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation; | -- | NP_001329133.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana] | 11 | 9 | 4 | 1 |
| AT5G03330 | translation only | 0.28402711884994003 | -1.1850035911119916 | AT5G03330 | -- | GO:0004843,cysteine-type deubiquitinase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; | -- | NP_001331866.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana] | 38 | 44 | 19 | 6 |
| AT5G05590 | translation only | -0.4050897048159787 | -1.5820271019987648 | AT5G05590 | -- | GO:0000162,tryptophan biosynthetic process; GO:0004640,phosphoribosylanthranilate isomerase activity; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016853,isomerase activity; | trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]; K01817; | NP_196178.2 phosphoribosylanthranilate isomerase 2 [Arabidopsis thaliana] | 8 | 14 | 3 | 2 |
| AT5G05990 | translation only | 0.8668218671328802 | 1.0390109562445922 | AT5G05990 | -- | GO:0003674,molecular_function; GO:0005759,mitochondrial matrix; GO:0008150,biological_process; | -- | NP_196218.1 Mitochondrial glycoprotein family protein [Arabidopsis thaliana] | 25 | 18 | 32 | 26 |
| AT5G06930 | translation only | -0.9168658475690148 | -2.130821873324648 | AT5G06930 | -- | GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005643,nuclear pore; | -- | NP_001318495.1 nucleolar-like protein [Arabidopsis thaliana] | 23 | 24 | 3 | 4 |
| AT5G08270 | translation only | -0.3247633380511643 | -1.169475391308517 | AT5G08270 | -- | -- | -- | NP_196444.1 C5orf35 [Arabidopsis thaliana] | 23 | 26 | 11 | 4 |
| AT5G08340 | translation only | 0.5431078044556281 | -1.5248147318709275 | AT5G08340 | -- | GO:0000166,nucleotide binding; GO:0003919,FMN adenylyltransferase activity; GO:0005524,ATP binding; GO:0006747,FAD biosynthetic process; GO:0009231,riboflavin biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; | RIBF; FAD synthetase [EC:2.7.7.2]; K22949; | NP_568192.2 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana] | 22 | 18 | 10 | 0 |
| AT5G08400 | translation only | -0.6371265801096806 | 1.3684128188841 | AT5G08400 | -- | GO:0005575,cellular_component; GO:0008150,biological_process; | -- | NP_001031856.1 structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana] | 35 | 47 | 81 | 61 |
| AT5G10720 | translation only | 0.04941117236421119 | -1.477096078792661 | AT5G10720 | -- | GO:0000155,phosphorelay sensor kinase activity; GO:0000160,phosphorelay signal transduction system; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004673,protein histidine kinase activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007165,signal transduction; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0009927,histidine phosphotransfer kinase activity; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0018106,peptidyl-histidine phosphorylation; GO:0042221,response to chemical; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0048856,anatomical structure development; GO:0070301,cellular response to hydrogen peroxide; GO:0071219,cellular response to molecule of bacterial origin; GO:0071732,cellular response to nitric oxide; GO:0090333,regulation of stomatal closure; | -- | NP_196633.2 histidine kinase 5 [Arabidopsis thaliana] | 17 | 6 | 1 | 4 |
| AT5G10930 | translation only | -0.0695587784443657 | 1.3271491775293165 | AT5G10930 | -- | GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050896,response to stimulus; GO:0051592,response to calcium ion; GO:0106310,protein serine kinase activity; | -- | NP_568241.2 CBL-interacting protein kinase 5 [Arabidopsis thaliana] | 15 | 8 | 28 | 11 |
| AT5G13670 | translation only | -0.16630987327778066 | -1.2795353303979065 | AT5G13670 | -- | GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; | -- | NP_196871.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] | 19 | 18 | 5 | 5 |
| AT5G15760 | translation only | 0.3699686757932223 | 1.0570769627213183 | AT5G15760 | -- | GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:1990904,ribonucleoprotein complex; | -- | NP_197080.1 Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana] | 13 | 6 | 16 | 10 |
| AT5G16340 | translation only | -0.22317328021840768 | -1.0842838646742436 | AT5G16340 | -- | GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity; | -- | NP_197138.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] | 49 | 70 | 17 | 20 |
| AT5G18100 | translation only | 0.5384535296763242 | 1.1411734735400805 | AT5G18100 | -- | GO:0000325,plant-type vacuole; GO:0004784,superoxide dismutase activity; GO:0005507,copper ion binding; GO:0005777,peroxisome; GO:0006801,superoxide metabolic process; GO:0006979,response to oxidative stress; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0019430,removal of superoxide radicals; GO:0046872,metal ion binding; GO:0071457,cellular response to ozone; GO:0071472,cellular response to salt stress; GO:0071484,cellular response to light intensity; GO:0071486,cellular response to high light intensity; GO:0071493,cellular response to UV-B; GO:0098869,cellular oxidant detoxification; | SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]; K04565; | NP_197311.1 copper/zinc superoxide dismutase 3 [Arabidopsis thaliana] | 77 | 70 | 117 | 97 |
| AT5G18748 | translation only | -0.05836015877081043 | 2.6112050532731836 | AT5G18748 | -- | GO:0003674,molecular_function; GO:0008150,biological_process; | -- | NP_001119250.1 hypothetical protein AT5G18748 [Arabidopsis thaliana] | 12 | 5 | 30 | 36 |
| AT5G19340 | translation only | 0.02557022821773498 | 1.1455246372225374 | AT5G19340 | -- | GO:0005515,protein binding; | -- | NP_197435.2 hypothetical protein AT5G19340 [Arabidopsis thaliana] | 32 | 36 | 50 | 49 |
| AT5G20110 | translation only | 0.8944082919559412 | 1.7398748890867566 | AT5G20110 | -- | GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005868,cytoplasmic dynein complex; GO:0005874,microtubule; GO:0007017,microtubule-based process; GO:0030286,dynein complex; GO:0045505,dynein intermediate chain binding; GO:0110165,cellular anatomical entity; | DYNLL; dynein light chain LC8-type; K10418; | NP_197511.1 Dynein light chain type 1 family protein [Arabidopsis thaliana] | 6 | 11 | 10 | 26 |
| AT5G23070 | translation only | 0.879904376895475 | 1.1071226889162535 | AT5G23070 | -- | GO:0000166,nucleotide binding; GO:0004797,thymidine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009157,deoxyribonucleoside monophosphate biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046104,thymidine metabolic process; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:0090351,seedling development; | tdk, TK; thymidine kinase [EC:2.7.1.21]; K00857; | NP_568426.1 Thymidine kinase [Arabidopsis thaliana] | 36 | 29 | 55 | 38 |
| AT5G24460 | translation only | 0.4483445740532223 | 1.6361979323008995 | AT5G24460 | -- | -- | -- | NP_197834.1 RING-H2 zinc finger protein [Arabidopsis thaliana] | 11 | 15 | 35 | 20 |
| AT5G24680 | translation only | -0.137280404359052 | 1.0792126389410164 | AT5G24680 | -- | GO:0003674,molecular_function; GO:0005634,nucleus; GO:0010468,regulation of gene expression; | -- | NP_197856.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Arabidopsis thaliana] | 11 | 4 | 9 | 11 |
| AT5G25530 | translation only | 0.08546021861502968 | -1.6593270043116652 | AT5G25530 | -- | GO:0005829,cytosol; GO:0006457,protein folding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding; | -- | NP_001332583.1 DNAJ heat shock family protein [Arabidopsis thaliana] | 10 | 10 | 1 | 3 |
| AT5G26700 | translation only | 0.7477769138792804 | -1.428940534123371 | AT5G26700 | -- | GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development; | -- | NP_850875.1 RmlC-like cupins superfamily protein [Arabidopsis thaliana] | 25 | 18 | 9 | 2 |
| AT5G27120 | translation only | 0.6217676109522383 | 1.0063477079475605 | AT5G27120 | -- | GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; | NOP58; nucleolar protein 58; K14565; | NP_198064.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana] | 333 | 355 | 528 | 394 |
| AT5G27430 | translation only | 0.5110281756793591 | -1.2333396398917005 | AT5G27430 | -- | GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER; | SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948; | NP_198095.1 Signal peptidase subunit [Arabidopsis thaliana] | 47 | 68 | 25 | 9 |
| AT5G41860 | translation only | -0.4760358099187132 | 1.0934747641334734 | AT5G41860 | -- | GO:0005575,cellular_component; GO:0016020,membrane; | -- | NP_199001.1 transmembrane protein [Arabidopsis thaliana] | 66 | 50 | 81 | 80 |
| AT5G42750 | translation only | -0.4616760307902295 | 1.3092987955464157 | AT5G42750 | -- | GO:0004860,protein kinase inhibitor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010423,negative regulation of brassinosteroid biosynthetic process; GO:0016020,membrane; GO:0019210,kinase inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046982,protein heterodimerization activity; | BKI1; BRI1 kinase inhibitor 1; K14499; | NP_568610.1 BRI1 kinase inhibitor 1 [Arabidopsis thaliana] | 11 | 3 | 11 | 11 |
| AT5G43950 | translation only | 0.6474675780912235 | 1.0839808770870327 | AT5G43950 | -- | GO:0003674,molecular_function; GO:0005575,cellular_component; | -- | NP_199208.1 vacuolar protein sorting-associated protein (DUF946) [Arabidopsis thaliana] | 12 | 7 | 13 | 13 |
| AT5G49560 | translation only | 0.33022003907372915 | 1.8725905200888824 | AT5G49560 | -- | GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0032259,methylation; | -- | NP_199767.1 Putative methyltransferase family protein [Arabidopsis thaliana] | 11 | 0 | 13 | 12 |
| AT5G51670 | translation only | 0.01916783927614603 | -1.2443957225622502 | AT5G51670 | -- | GO:0045927,positive regulation of growth; | -- | NP_001318781.1 hypothetical protein (DUF668) [Arabidopsis thaliana] | 52 | 27 | 14 | 8 |
| AT5G53810 | translation only | 0.21808875171582456 | -1.07717590267186 | AT5G53810 | -- | GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0032259,methylation; GO:0046983,protein dimerization activity; | -- | NP_200192.1 O-methyltransferase family protein [Arabidopsis thaliana] | 13 | 16 | 4 | 5 |
| AT5G54090 | translation only | -0.4928307120220326 | 1.4209930993293365 | AT5G54090 | -- | GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0004519,endonuclease activity; GO:0005524,ATP binding; GO:0006298,mismatch repair; GO:0016887,ATP hydrolysis activity; GO:0030983,mismatched DNA binding; GO:0045910,negative regulation of DNA recombination; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0140664,ATP-dependent DNA damage sensor activity; | -- | NP_200220.2 DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana] | 12 | 11 | 24 | 17 |
| AT5G54300 | translation only | 0.23430590159125292 | 1.2532551099211349 | AT5G54300 | -- | GO:0003674,molecular_function; GO:0016020,membrane; | -- | NP_200241.1 cotton fiber-like protein (DUF761) [Arabidopsis thaliana] | 23 | 25 | 62 | 18 |
| AT5G55490 | translation only | -0.6639222002703825 | -1.5283775505676946 | AT5G55490 | -- | GO:0005886,plasma membrane; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0042802,identical protein binding; | -- | NP_001330005.1 gamete expressed protein 1 [Arabidopsis thaliana] | 8 | 17 | 4 | 2 |
| AT5G57780 | translation only | 0.00966191422170563 | 2.674095341015346 | AT5G57780 | -- | GO:0006355,regulation of DNA-templated transcription; | -- | NP_200586.1 transcription factor [Arabidopsis thaliana] | 3 | 5 | 18 | 16 |
| AT5G58310 | translation only | -0.40926410692294096 | -1.382989894259853 | AT5G58310 | -- | GO:0005575,cellular_component; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity; | -- | NP_200639.1 methyl esterase 18 [Arabidopsis thaliana] | 110 | 70 | 36 | 11 |
| AT5G58840 | translation only | -0.062599113504477 | -3.2754574696771956 | AT5G58840 | -- | GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; | -- | NP_568890.2 Subtilase family protein [Arabidopsis thaliana] | 32 | 27 | 2 | 2 |
| AT5G62770 | translation only | 0.3745960271346928 | 1.1987836926861426 | AT5G62770 | -- | GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016301,kinase activity; GO:0016310,phosphorylation; | -- | NP_201083.1 membrane-associated kinase regulator, putative (DUF1645) [Arabidopsis thaliana] | 25 | 22 | 33 | 37 |
| AT5G64410 | translation only | -0.4115175318271056 | -1.0387359365662283 | AT5G64410 | -- | GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport; | -- | NP_201246.1 oligopeptide transporter 4 [Arabidopsis thaliana] | 199 | 153 | 70 | 44 |