ID	status	mRNA_log2FC	RPF_log2FC	Name	TF	GO	KEGG	Nr	wt_1	wt_2	h3_1	h3_2
AT1G07260	homodirectional	-1.8236245481263984	-1.5923560628481055	AT1G07260	--	GO:0004134,4-alpha-glucanotransferase activity; GO:0008194,UDP-glycosyltransferase activity; GO:0010113,negative regulation of systemic acquired resistance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity;	--	NP_172206.1 UDP-glucosyl transferase 71C3 [Arabidopsis thaliana]	20	9	2	4
AT1G19780	homodirectional	1.179083180515525	1.2915980492979413	AT1G19780	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_173408.2 cyclic nucleotide gated channel 8 [Arabidopsis thaliana]	4	11	19	7
AT1G49490	homodirectional	-1.4757142192786172	-1.0555553567967992	AT1G49490	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_001320463.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	69	73	17	27
AT1G53480	homodirectional	-1.4787174487018375	-2.014045053341304	AT1G53480	--	GO:0008150,biological_process;	--	NP_001185210.1 mto 1 responding down 1 [Arabidopsis thaliana]	22	25	6	2
AT1G67330	homodirectional	1.2759202376500542	1.2518267844989206	AT1G67330	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006479,protein methylation; GO:0009827,plant-type cell wall modification; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0030775,glucuronoxylan 4-O-methyltransferase activity; GO:0045492,xylan biosynthetic process; GO:0071554,cell wall organization or biogenesis;	--	NP_176901.1 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]	11	3	15	7
AT1G67870	homodirectional	-1.2431108702264588	-1.4508734249800177	AT1G67870	--	GO:0008150,biological_process;	--	KAG7658789.1 hypothetical protein ISN44_As01g057450 [Arabidopsis suecica]	700	580	134	168
AT1G68940	homodirectional	-1.068680285455804	-1.0937670528266714	AT1G68940	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001319353.1 Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana]	14	6	3	3
AT1G72280	homodirectional	-1.8301584713784889	-1.1319428270316263	AT1G72280	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0015035,protein-disulfide reductase activity; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016972,thiol oxidase activity; GO:0034975,protein folding in endoplasmic reticulum; GO:0071949,FAD binding;	ERO1L; ERO1-like protein alpha [EC:1.8.4.-]; K10950;	NP_177372.1 endoplasmic reticulum oxidoreductins 1 [Arabidopsis thaliana]	189	131	43	51
AT2G03630	homodirectional	1.486341978910953	1.123467185129733	AT2G03630	--	--	--	NP_001318192.1 suppressor SRP40-like protein [Arabidopsis thaliana]	9	7	13	10
AT2G30830	homodirectional	-1.118203467840868	-1.4001746755600275	AT2G30830	--	GO:0008150,biological_process; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_180641.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	15	15	7	1
AT2G35658	homodirectional	-1.9941616589089712	-1.816636710092048	AT2G35658	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_001118445.1 transmembrane protein [Arabidopsis thaliana]	17	9	4	1
AT2G36090	homodirectional	1.284407545344614	1.0555263420563008	AT2G36090	--	GO:0005515,protein binding; GO:0016020,membrane;	--	NP_181153.1 F-box family protein [Arabidopsis thaliana]	10	5	15	6
AT2G38470	homodirectional	1.2103630376577237	1.1032011877211811	AT2G38470	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009627,systemic acquired resistance; GO:0009651,response to salt stress; GO:0010120,camalexin biosynthetic process; GO:0010508,positive regulation of autophagy; GO:0034605,cellular response to heat; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0070370,cellular heat acclimation;	WRKY33; WRKY transcription factor 33; K13424;	NP_181381.2 WRKY DNA-binding protein 33 [Arabidopsis thaliana]	13	15	22	18
AT2G43560	homodirectional	-1.0572838739848047	-1.1925023848459535	AT2G43560	--	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016853,isomerase activity; GO:0031977,thylakoid lumen;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_181884.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	123	129	45	29
AT2G44140	homodirectional	1.374057233853635	1.1476659075931681	AT2G44140	--	GO:0004175,endopeptidase activity; GO:0005575,cellular_component; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity;	ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342;	NP_001324765.1 Peptidase family C54 protein [Arabidopsis thaliana]	90	68	152	83
AT2G44360	homodirectional	2.0382432017053027	1.7116868914199568	AT2G44360	--	GO:0005575,cellular_component;	--	NP_181964.1 ecotropic viral integration site protein [Arabidopsis thaliana]	17	16	37	34
AT3G01990	homodirectional	1.2312288081826095	1.4820767210670591	AT3G01990	--	GO:0005515,protein binding; GO:0016597,amino acid binding;	--	NP_001327455.1 ACT domain repeat 6 [Arabidopsis thaliana]	7	5	7	14
AT3G16240	homodirectional	-1.0537873968658025	-1.2815958531714076	AT3G16240	--	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009705,plant-type vacuole membrane; GO:0009941,chloroplast envelope; GO:0015200,methylammonium transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042802,identical protein binding; GO:0042807,central vacuole; GO:0055085,transmembrane transport; GO:0072489,methylammonium transmembrane transport;	--	NP_188245.1 delta tonoplast integral protein [Arabidopsis thaliana]	2617	2251	739	584
AT3G25490	homodirectional	-1.582493527728936	-1.0481597521133836	AT3G25490	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_189176.1 Protein kinase family protein [Arabidopsis thaliana]	22	14	4	7
AT3G48080	homodirectional	-2.202869948256778	-1.476454625279522	AT3G48080	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0016787,hydrolase activity; GO:0106093,EDS1 disease-resistance complex;	EDS1; enhanced disease susceptibility 1 protein; K18875;	NP_190391.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	36	6	8	2
AT3G52160	homodirectional	-1.6881886900135732	-1.1968820313599795	AT3G52160	--	GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	ABK28598.1 unknown, partial [Arabidopsis thaliana]	141	127	41	36
AT3G54890	homodirectional	-1.282790832778837	-1.03506362538564	AT3G54890	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA1; light-harvesting complex I chlorophyll a/b binding protein 1; K08907;	NP_191049.1 chlorophyll a-b binding protein 6 [Arabidopsis thaliana]	2453	2497	891	713
AT3G63390	homodirectional	1.2190450538031583	1.0269618029893293	AT3G63390	--	GO:0009536,plastid;	--	NP_567146.1 hypothetical protein AT3G63390 [Arabidopsis thaliana]	8	8	14	8
AT4G00850	homodirectional	1.1660360048080345	1.9066647014912073	AT4G00850	--	GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008283,cell population proliferation; GO:0016020,membrane; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048366,leaf development; GO:0051301,cell division;	--	NP_567194.1 GRF1-interacting factor 3 [Arabidopsis thaliana]	8	2	8	15
AT4G14050	homodirectional	-3.150962251214652	-1.4634025163819866	AT4G14050	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0016554,cytidine to uridine editing;	--	NP_001329428.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	42	14	7	6
AT4G15260	homodirectional	-1.9123934187853997	-1.834853061510474	AT4G15260	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_193261.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	16	22	3	4
AT4G30490	homodirectional	1.402602747563192	1.1539550296969034	AT4G30490	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity;	--	NP_567847.1 AFG1-like ATPase family protein [Arabidopsis thaliana]	30	51	95	32
AT5G10600	homodirectional	-2.855392216683833	-1.046755989034985	AT5G10600	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_196622.2 cytochrome P450, family 81, subfamily K, polypeptide 2 [Arabidopsis thaliana]	10	17	6	3
AT5G60250	homodirectional	1.027551265449763	2.051775024968742	AT5G60250	--	GO:0000151,ubiquitin ligase complex; GO:0000209,protein polyubiquitination; GO:0003676,nucleic acid binding; GO:0004523,RNA-DNA hybrid ribonuclease activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	--	NP_200833.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	34	44	126	91
AT1G17600	opposite change	-1.4392049919018646	1.2124079820911635	AT1G17600	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043531,ADP binding; GO:0045088,regulation of innate immune response;	--	NP_173203.2 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	16	1	10	14
AT1G23300	opposite change	1.2994747795259398	-1.1427034669822689	AT1G23300	--	GO:0005774,vacuolar membrane; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_173744.1 MATE efflux family protein [Arabidopsis thaliana]	17	4	3	3
AT1G54040	opposite change	-1.6390525730897345	1.3888901893542922	AT1G54040	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0042742,defense response to bacterium; GO:0050790,regulation of catalytic activity; GO:0080028,nitrile biosynthetic process;	--	NP_175806.3 epithiospecifier protein [Arabidopsis thaliana]	30	43	86	45
AT1G74550	opposite change	1.6827817765461228	-1.4865047707826329	AT1G74550	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity;	CYP98A9; cytochrome P450 family 98 subfamily A polypeptide 9 [EC:1.14.13.-]; K23662;	NP_177595.1 cytochrome P450, family 98, subfamily A, polypeptide 9 [Arabidopsis thaliana]	458	372	113	83
AT1G78130	opposite change	-1.0424677549895986	1.7008302565035007	AT1G78130	--	GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_177937.1 Major facilitator superfamily protein [Arabidopsis thaliana]	3	9	17	10
AT2G38780	opposite change	1.925513106975676	-1.4135299386542974	AT2G38780	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016020,membrane;	--	NP_001324243.1 cytochrome C oxidase subunit [Arabidopsis thaliana]	45	27	12	6
AT2G41940	opposite change	-1.0823449578330993	1.3204886712730664	AT2G41940	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010026,trichome differentiation; GO:0010090,trichome morphogenesis; GO:0030154,cell differentiation; GO:0046872,metal ion binding;	--	NP_181725.1 zinc finger protein 8 [Arabidopsis thaliana]	9	7	13	13
AT2G44790	opposite change	1.0132354173661071	-1.2477277059734166	AT2G44790	--	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding;	--	NP_182006.1 uclacyanin 2 [Arabidopsis thaliana]	49	44	15	11
AT2G44850	opposite change	1.9349917912144512	-1.092733137982522	AT2G44850	--	GO:0005739,mitochondrion;	--	NP_182012.1 hypothetical protein AT2G44850 [Arabidopsis thaliana]	20	34	9	8
AT3G47580	opposite change	1.1740040275945998	-1.8706745468511763	AT3G47580	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_190342.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	16	6	3	1
AT3G56030	opposite change	-1.0258639696647256	1.6507056933808637	AT3G56030	--	GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_191162.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	7	5	15	10
AT4G14100	opposite change	1.0084420080548595	-1.1953291969185806	AT4G14100	--	GO:0000325,plant-type vacuole; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0099503,secretory vesicle;	--	NP_567420.1 transferases, transferring glycosyl groups [Arabidopsis thaliana]	70	54	33	5
AT4G34560	opposite change	8.584649387288803	-1.3145871179841242	AT4G34560	--	GO:0016020,membrane;	--	NP_195182.2 transmembrane protein [Arabidopsis thaliana]	18	21	3	7
AT4G39780	opposite change	1.0025034721011516	-1.0668592768636211	AT4G39780	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding;	--	NP_195688.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	14	22	9	3
AT5G37490	opposite change	4.139217183101774	-1.8712197408622853	AT5G37490	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity;	--	NP_198565.1 ARM repeat superfamily protein [Arabidopsis thaliana]	9	16	5	0
AT1G02110	transcription only	-1.1328403062881045	0.5816131710566327	AT1G02110	--	--	--	NP_171713.2 bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]	96	52	84	61
AT1G03140	transcription only	-3.368070099807457	0.3508042815452916	AT1G03140	--	GO:0000350,generation of catalytic spliceosome for second transesterification step; GO:0000380,alternative mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071021,U2-type post-spliceosomal complex; GO:0110165,cellular anatomical entity;	PRPF18, PRP18; pre-mRNA-splicing factor 18; K12817;	NP_563676.1 splicing factor Prp18 family protein [Arabidopsis thaliana]	188	172	165	138
AT1G03730	transcription only	1.143833823770539	-0.5262948409865126	AT1G03730	--	GO:0016020,membrane;	--	NP_563690.1 pyrroline-5-carboxylate reductase [Arabidopsis thaliana]	28	15	14	6
AT1G03750	transcription only	2.0658540984561986	0.03490219629399271	AT1G03750	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0006974,cellular response to DNA damage stimulus; GO:0016787,hydrolase activity; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_171871.2 switch 2 [Arabidopsis thaliana]	19	22	21	8
AT1G05560	transcription only	-1.0808156286548618	-0.04418538424755097	AT1G05560	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005856,cytoskeleton; GO:0008194,UDP-glycosyltransferase activity; GO:0009524,phragmoplast; GO:0009751,response to salicylic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0046482,para-aminobenzoic acid metabolic process; GO:0047215,indole-3-acetate beta-glucosyltransferase activity; GO:0048471,perinuclear region of cytoplasm; GO:0080002,UDP-glucose:4-aminobenzoate acylglucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_001320882.1 UDP-glucosyltransferase 75B1 [Arabidopsis thaliana]	40	44	29	25
AT1G06000	transcription only	-1.0580173019695096	-0.5824292231980727	AT1G06000	--	GO:0005576,extracellular region; GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0103077,quercetin 3-glucoside 7-O-rhamnosyltransferase activity; GO:0103078,quercetin 3-rhamnoside 7-O-rhamnosyltransferase activity;	--	NP_563756.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	780	697	367	286
AT1G06070	transcription only	1.1331053467460528	-0.07296473673914014	AT1G06070	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_172097.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]	91	68	64	37
AT1G06250	transcription only	-1.1971494915741276	-0.1335188616387536	AT1G06250	--	GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity;	--	NP_172115.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	35	39	20	24
AT1G06660	transcription only	1.3610559851193755	0.12986498498483143	AT1G06660	--	GO:0006355,regulation of DNA-templated transcription; GO:0007142,male meiosis II; GO:0009556,microsporogenesis; GO:0051321,meiotic cell cycle;	--	NP_172151.2 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit [Arabidopsis thaliana]	21	25	21	13
AT1G06670	transcription only	-2.630296585589261	0.4043187055131579	AT1G06670	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0032508,DNA duplex unwinding;	DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]; K14442;	NP_172152.1 nuclear DEIH-boxhelicase [Arabidopsis thaliana]	305	300	275	252
AT1G06680	transcription only	-1.3947953203710095	-0.46203927321069616	AT1G06680	--	GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005576,extracellular region; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0019684,photosynthesis, light reaction; GO:0019898,extrinsic component of membrane; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0048046,apoplast; GO:1901149,salicylic acid binding;	psbP; photosystem II oxygen-evolving enhancer protein 2; K02717;	NP_172153.1 photosystem II subunit P-1 [Arabidopsis thaliana]	5038	4532	2627	1982
AT1G07050	transcription only	-1.8893736331499071	0.9727288156977988	AT1G07050	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_001320785.1 CCT motif family protein [Arabidopsis thaliana]	47	51	77	52
AT1G07510	transcription only	1.2813395240238283	-0.13319590963648795	AT1G07510	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005745,m-AAA complex; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0034982,mitochondrial protein processing; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	AFG3; AFG3 family protein [EC:3.4.24.-]; K08956;	NP_172231.2 FTSH protease 10 [Arabidopsis thaliana]	466	433	309	235
AT1G07720	transcription only	-1.065818114191479	-0.39394946492973487	AT1G07720	--	GO:0005783,endoplasmic reticulum; GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_001322003.1 3-ketoacyl-CoA synthase 3 [Arabidopsis thaliana]	310	219	135	127
AT1G08460	transcription only	-1.9779203181335585	0.06990772731729009	AT1G08460	--	GO:0004407,histone deacetylase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_001320319.1 histone deacetylase 8 [Arabidopsis thaliana]	86	65	62	43
AT1G08560	transcription only	-1.5679555562825984	-0.21993973668251865	AT1G08560	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0006887,exocytosis; GO:0006906,vesicle fusion; GO:0007049,cell cycle; GO:0009504,cell plate; GO:0009506,plasmodesma; GO:0009524,phragmoplast; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0048278,vesicle docking; GO:0051301,cell division; GO:0061025,membrane fusion; GO:0110165,cellular anatomical entity;	STX1B_2_3; syntaxin 1B/2/3; K08486;	NP_172332.1 syntaxin of plants 111 [Arabidopsis thaliana]	397	394	253	198
AT1G08840	transcription only	1.4032536106631126	0.15380297740126803	AT1G08840	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003824,catalytic activity; GO:0004386,helicase activity; GO:0004518,nuclease activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0006259,DNA metabolic process; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0008152,metabolic process; GO:0010073,meristem maintenance; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017108,5'-flap endonuclease activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0033567,DNA replication, Okazaki fragment processing; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0071932,replication fork reversal; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	DNA2; DNA replication ATP-dependent helicase Dna2 [EC:3.6.4.12]; K10742;	NP_001184943.1 DNA replication helicase [Arabidopsis thaliana]	34	37	21	30
AT1G09420	transcription only	-1.2308768564302217	0.2598702088513619	AT1G09420	--	GO:0004345,glucose-6-phosphate dehydrogenase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050661,NADP binding;	G6PD, zwf; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]; K00036;	NP_563844.1 glucose-6-phosphate dehydrogenase 4 [Arabidopsis thaliana]	9	10	13	3
AT1G09430	transcription only	-1.0210305634860617	-0.2712133026785179	AT1G09430	--	GO:0000166,nucleotide binding; GO:0003878,ATP citrate synthase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006085,acetyl-CoA biosynthetic process; GO:0006629,lipid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity;	ACLY; ATP citrate (pro-S)-lyase [EC:2.3.3.8]; K01648;	NP_172414.1 ATP-citrate lyase A-3 [Arabidopsis thaliana]	195	206	129	93
AT1G09800	transcription only	-1.0020639025670224	-0.8308516707269181	AT1G09800	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0106029,tRNA pseudouridine synthase activity;	--	NP_001322359.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	44	27	14	12
AT1G10500	transcription only	1.0805674149452262	-0.6110489575351318	AT1G10500	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0030674,protein-macromolecule adaptor activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding;	--	NP_172520.1 chloroplast-localized ISCA-like protein [Arabidopsis thaliana]	202	210	104	76
AT1G10760	transcription only	-2.2374359892494144	0.38829538649844986	AT1G10760	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009610,response to symbiotic fungus; GO:0009631,cold acclimation; GO:0009941,chloroplast envelope; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0050521,alpha-glucan, water dikinase activity; GO:0102216,maltodextrin water dikinase; GO:0102218,starch, H2O dikinase activity;	R1; alpha-glucan, water dikinase [EC:2.7.9.4]; K08244;	NP_001318975.1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein [Arabidopsis thaliana]	1123	1100	1121	818
AT1G11860	transcription only	-1.2144291477176552	-0.644096752056815	AT1G11860	--	GO:0003729,mRNA binding; GO:0004047,aminomethyltransferase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0006546,glycine catabolic process; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0022626,cytosolic ribosome; GO:0048046,apoplast;	gcvT, AMT; aminomethyltransferase [EC:2.1.2.10]; K00605;	NP_001318983.1 Glycine cleavage T-protein family [Arabidopsis thaliana]	1786	1513	815	586
AT1G12110	transcription only	-1.1403260117012628	0.11655307952827916	AT1G12110	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009414,response to water deprivation; GO:0009635,response to herbicide; GO:0009734,auxin-activated signaling pathway; GO:0010167,response to nitrate; GO:0010540,basipetal auxin transport; GO:0015112,nitrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0048527,lateral root development; GO:0048573,photoperiodism, flowering; GO:0055085,transmembrane transport;	--	NP_563899.1 nitrate transporter 1.1 [Arabidopsis thaliana]	65	68	65	33
AT1G12330	transcription only	-1.3623555821255495	-0.08783233856904187	AT1G12330	--	GO:0003674,molecular_function; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_172697.2 cyclin-dependent kinase-like protein [Arabidopsis thaliana]	111	114	75	65
AT1G12840	transcription only	1.36217919839765	-0.2043170262906376	AT1G12840	--	GO:0000221,vacuolar proton-transporting V-type ATPase, V1 domain; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009826,unidimensional cell growth; GO:0015078,proton transmembrane transporter activity; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C; K02148;	NP_563916.1 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) [Arabidopsis thaliana]	894	778	561	403
AT1G13150	transcription only	-1.777115707701245	-0.33841422538006954	AT1G13150	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172774.1 cytochrome P450, family 86, subfamily C, polypeptide 4 [Arabidopsis thaliana]	86	43	30	35
AT1G13330	transcription only	1.426140267639943	-0.5603640057823909	AT1G13330	--	GO:0000709,meiotic joint molecule formation; GO:0000794,condensed nuclear chromosome; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0006310,DNA recombination; GO:0007129,homologous chromosome pairing at meiosis; GO:0007131,reciprocal meiotic recombination; GO:0010774,meiotic strand invasion involved in reciprocal meiotic recombination; GO:0050790,regulation of catalytic activity; GO:0051026,chiasma assembly; GO:0051321,meiotic cell cycle; GO:0090304,nucleic acid metabolic process; GO:0120230,recombinase activator activity; GO:0120231,DNA recombinase auxiliary factor complex;	--	NP_172791.1 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [Arabidopsis thaliana]	12	7	8	1
AT1G13690	transcription only	1.2704785060993882	-0.33827491369762747	AT1G13690	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0008150,biological_process;	--	NP_563931.2 ATPase E1 [Arabidopsis thaliana]	216	162	106	90
AT1G14380	transcription only	1.324704190244674	0.00806937586890399	AT1G14380	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex;	--	NP_001031046.1 IQ-domain 28 [Arabidopsis thaliana]	126	141	106	74
AT1G14650	transcription only	3.6610348007412337	0.2234665285837715	AT1G14650	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005684,U2-type spliceosomal complex; GO:0005686,U2 snRNP; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0045292,mRNA cis splicing, via spliceosome; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3A1, SAP114; splicing factor 3A subunit 1; K12825;	AAF63169.1 T5E21.13 [Arabidopsis thaliana]	319	278	290	177
AT1G14890	transcription only	1.1085669269560487	-0.42649239617510887	AT1G14890	--	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity;	--	NP_563960.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]	107	143	77	49
AT1G15030	transcription only	1.5107483897550549	0.32120398856003446	AT1G15030	--	GO:0008150,biological_process;	--	NP_001320245.1 hypothetical protein (DUF789) [Arabidopsis thaliana]	53	76	70	40
AT1G15240	transcription only	1.9474133336160304	-0.07922205115897082	AT1G15240	--	GO:0005768,endosome; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding;	SNX13; sorting nexin-13; K17925;	NP_001319008.1 phox (PX) domain-containing protein [Arabidopsis thaliana]	88	91	49	61
AT1G15415	transcription only	-1.389514096746109	0.4031861308833056	AT1G15415	--	GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_172994.1 late embryogenesis abundant-like protein [Arabidopsis thaliana]	14	20	16	14
AT1G15700	transcription only	-1.2081409822604967	0.41265636543244594	AT1G15700	--	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009544,chloroplast ATP synthase complex; GO:0009579,thylakoid; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0030234,enzyme regulator activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0050790,regulation of catalytic activity; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; GO:2000067,regulation of root morphogenesis;	ATPF1G, atpG; F-type H+-transporting ATPase subunit gamma; K02115;	NP_173022.1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana]	40	39	35	34
AT1G15990	transcription only	-1.1547983312180174	0.1713985163881798	AT1G15990	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0090406,pollen tube;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_001319014.1 cyclic nucleotide gated channel 7 [Arabidopsis thaliana]	25	16	21	10
AT1G16750	transcription only	1.519291637346759	-0.10924602988959062	AT1G16750	--	--	--	NP_564005.2 GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]	87	67	47	46
AT1G17100	transcription only	-1.1780639357290963	-0.5640379253866021	AT1G17100	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0020037,heme binding; GO:0099503,secretory vesicle; GO:0110165,cellular anatomical entity;	--	NP_173153.1 SOUL heme-binding family protein [Arabidopsis thaliana]	308	263	174	87
AT1G17220	transcription only	-1.251488842106875	-0.3238327405668705	AT1G17220	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006412,translation; GO:0006413,translational initiation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_173165.1 Translation initiation factor 2, small GTP-binding protein [Arabidopsis thaliana]	663	526	339	285
AT1G17230	transcription only	-1.233701632096922	0.06282710585551164	AT1G17230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173166.2 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	38	35	31	20
AT1G18390	transcription only	1.9992717429224176	-0.4138661818016924	AT1G18390	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0030247,polysaccharide binding;	--	NP_173275.4 Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]	11	10	9	2
AT1G18640	transcription only	1.0280486095096324	-0.08100117137643355	AT1G18640	--	GO:0000096,sulfur amino acid metabolic process; GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0006563,L-serine metabolic process; GO:0006564,L-serine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016311,dephosphorylation; GO:0016787,hydrolase activity; GO:0036424,L-phosphoserine phosphatase activity; GO:0046872,metal ion binding; GO:0048364,root development;	serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3]; K01079;	NP_973858.1 3-phosphoserine phosphatase [Arabidopsis thaliana]	129	89	85	52
AT1G20340	transcription only	-1.2665898496542642	-0.8935301132939873	AT1G20340	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016020,membrane; GO:0017148,negative regulation of translation; GO:0019904,protein domain specific binding; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046028,electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding; GO:0055035,plastid thylakoid membrane; GO:0055070,copper ion homeostasis;	petE; plastocyanin; K02638;	NP_173459.1 Cupredoxin superfamily protein [Arabidopsis thaliana]	13581	11403	4456	4311
AT1G20400	transcription only	1.3073892579251525	0.03378259033293431	AT1G20400	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_173465.1 hypothetical protein (DUF1204) [Arabidopsis thaliana]	15	6	3	10
AT1G21640	transcription only	1.3413730611864252	-0.614875413791741	AT1G21640	--	GO:0000166,nucleotide binding; GO:0003951,NAD+ kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0006741,NADP biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019674,NAD metabolic process;	ppnK, NADK; NAD+ kinase [EC:2.7.1.23]; K00858;	NP_001185057.1 NAD kinase 2 [Arabidopsis thaliana]	150	120	58	57
AT1G21670	transcription only	-1.7171104453225374	-0.604722746893471	AT1G21670	--	GO:0099503,secretory vesicle;	--	NP_564146.1 DPP6 amino-terminal domain protein [Arabidopsis thaliana]	154	140	66	61
AT1G22400	transcription only	-2.332410841199785	-0.6894802037651008	AT1G22400	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0050403,trans-zeatin O-beta-D-glucosyltransferase activity; GO:0050502,cis-zeatin O-beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173656.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	164	113	59	53
AT1G22730	transcription only	-1.445763100308461	0.5133423941484621	AT1G22730	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009646,response to absence of light; GO:0043022,ribosome binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0090549,response to carbon starvation;	--	NP_173687.1 MA3 domain-containing protein [Arabidopsis thaliana]	72	58	77	47
AT1G22850	transcription only	1.5696837327853312	-0.5045217107704529	AT1G22850	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016020,membrane;	--	VYS46932.1 unnamed protein product [Arabidopsis thaliana]	78	57	43	21
AT1G22910	transcription only	-2.0262440878062145	-0.6732512960060271	AT1G22910	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0030154,cell differentiation;	--	NP_973888.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	92	83	37	35
AT1G23130	transcription only	-1.078096300217256	-0.38430495262120334	AT1G23130	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response;	--	NP_564190.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	394	365	209	175
AT1G23400	transcription only	2.4186341776661826	0.2653233987229358	AT1G23400	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:1990904,ribonucleoprotein complex;	--	NP_173754.2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]	156	165	151	107
AT1G24320	transcription only	1.0841061845211013	0.31519529326558704	AT1G24320	--	GO:0004573,Glc3Man9GlcNAc2 oligosaccharide glucosidase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005975,carbohydrate metabolic process; GO:0006487,protein N-linked glycosylation; GO:0008152,metabolic process; GO:0009311,oligosaccharide metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	MOGS; mannosyl-oligosaccharide glucosidase [EC:3.2.1.106]; K01228;	NP_173842.2 Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]	21	4	7	12
AT1G25400	transcription only	1.0928071474646597	0.4230693638491609	AT1G25400	--	GO:0016020,membrane;	--	NP_001185095.1 transmembrane protein [Arabidopsis thaliana]	7	10	7	8
AT1G26760	transcription only	1.0707002837612905	-0.26323269676396155	AT1G26760	--	GO:0005515,protein binding;	--	NP_173998.2 SET domain protein 35 [Arabidopsis thaliana]	25	48	22	19
AT1G27210	transcription only	-1.1519874196860482	0.11098077340297656	AT1G27210	--	GO:0005515,protein binding; GO:0005874,microtubule; GO:0008017,microtubule binding;	--	NP_564273.1 ARM repeat superfamily protein [Arabidopsis thaliana]	151	99	94	82
AT1G28190	transcription only	2.227104033552396	-0.5288776034557522	AT1G28190	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009620,response to fungus;	--	NP_174140.1 hypothetical protein AT1G28190 [Arabidopsis thaliana]	34	11	11	9
AT1G28610	transcription only	-1.578658263206404	0.8696985678280613	AT1G28610	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_973932.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	21	12	20	19
AT1G29330	transcription only	1.3347422767782868	0.4482547266028011	AT1G29330	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005801,cis-Golgi network; GO:0006621,protein retention in ER lumen; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0046923,ER retention sequence binding;	KDELR; ER lumen protein retaining receptor; K10949;	NP_564326.1 ER lumen protein retaining receptor family protein [Arabidopsis thaliana]	69	53	58	51
AT1G29380	transcription only	-1.0339011941229426	0.4669982539277427	AT1G29380	--	GO:0008150,biological_process;	--	NP_001322587.1 Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]	13	11	18	5
AT1G29910	transcription only	-2.4336208267740105	-0.3951949786914124	AT1G29910	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009750,response to fructose; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; GO:0048046,apoplast;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_564339.1 chlorophyll A/B binding protein 3 [Arabidopsis thaliana]	1605	1556	889	705
AT1G30540	transcription only	-1.4703686712354176	-0.7701074443031237	AT1G30540	--	GO:0008150,biological_process; GO:0045127,N-acetylglucosamine kinase activity; GO:0046835,carbohydrate phosphorylation;	--	NP_564358.1 Actin-like ATPase superfamily protein [Arabidopsis thaliana]	49	35	16	16
AT1G31330	transcription only	-1.1603042113066022	-0.10868400571804245	AT1G31330	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding;	psaF; photosystem I subunit III; K02694;	NP_174418.1 photosystem I subunit F [Arabidopsis thaliana]	1912	1850	1390	944
AT1G32120	transcription only	-1.3636850250567731	-0.9349693672602984	AT1G32120	--	GO:0010073,meristem maintenance; GO:0048507,meristem development;	--	NP_174491.2 serine/threonine-protein phosphatase 7 long form-like protein [Arabidopsis thaliana]	32	21	15	4
AT1G33240	transcription only	-1.4024331194966997	-0.25718577554561145	AT1G33240	Trihelix	--	--	NP_001322395.1 GT-2-like 1 [Arabidopsis thaliana]	111	109	73	50
AT1G36380	transcription only	1.0965857218452857	-0.8041489464547281	AT1G36380	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_564474.1 transmembrane protein [Arabidopsis thaliana]	29	14	9	7
AT1G43170	transcription only	1.6497564850048465	0.5869367473800503	AT1G43170	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L3e, RPL3; large subunit ribosomal protein L3e; K02925;	NP_001031146.1 ribosomal protein 1 [Arabidopsis thaliana]	3002	2792	3355	2438
AT1G43670	transcription only	-2.09360024539768	-0.3072097603850679	AT1G43670	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0005986,sucrose biosynthetic process; GO:0006000,fructose metabolic process; GO:0006002,fructose 6-phosphate metabolic process; GO:0006094,gluconeogenesis; GO:0009737,response to abscisic acid; GO:0009750,response to fructose; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0042132,fructose 1,6-bisphosphate 1-phosphatase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046872,metal ion binding;	FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11]; K03841;	NP_175032.1 Inositol monophosphatase family protein [Arabidopsis thaliana]	458	431	239	232
AT1G43710	transcription only	-1.2998769635219456	-0.0914017487941384	AT1G43710	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006580,ethanolamine metabolic process; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0016831,carboxy-lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030170,pyridoxal phosphate binding; GO:0102705,serine decarboxylase activity; GO:1901564,organonitrogen compound metabolic process;	--	NP_175036.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]	359	276	217	175
AT1G48620	transcription only	-1.213596804218018	0.29180101654797763	AT1G48620	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_175295.1 high mobility group A5 [Arabidopsis thaliana]	234	264	231	176
AT1G48970	transcription only	-1.1976478886242743	-0.03503275058613016	AT1G48970	--	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0006413,translational initiation; GO:0016740,transferase activity; GO:0044237,cellular metabolic process;	EIF2B4; translation initiation factor eIF-2B subunit delta; K03680;	NP_175327.3 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]	83	78	63	42
AT1G49140	transcription only	3.0319951039762163	-0.26079110136641037	AT1G49140	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFB10; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10; K03966;	NP_001321329.1 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6) [Arabidopsis thaliana]	74	92	43	48
AT1G51590	transcription only	1.0756279905942845	0.22510952907449472	AT1G51590	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0004559,alpha-mannosidase activity; GO:0004571,mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; GO:0005509,calcium ion binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006486,protein glycosylation; GO:0006491,N-glycan processing; GO:0008152,metabolic process; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0046872,metal ion binding;	MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]; K01230;	NP_001031171.1 alpha-mannosidase 1 [Arabidopsis thaliana]	105	90	81	69
AT1G54680	transcription only	1.299838812036152	-0.30368646271904887	AT1G54680	--	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006413,translational initiation; GO:0006508,proteolysis; GO:0016020,membrane;	--	NP_001319230.1 translation initiation factor 3 subunit I [Arabidopsis thaliana]	14	5	6	4
AT1G55370	transcription only	1.1289158844333045	-0.43784241536137464	AT1G55370	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010628,positive regulation of gene expression; GO:0016020,membrane; GO:0030246,carbohydrate binding; GO:0047938,glucose-6-phosphate 1-epimerase activity;	--	NP_849810.1 NDH-dependent cyclic electron flow 5 [Arabidopsis thaliana]	6	12	5	4
AT1G55920	transcription only	-1.2526968825633846	-0.2007716553630186	AT1G55920	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006535,cysteine biosynthetic process from serine; GO:0008652,cellular amino acid biosynthetic process; GO:0009001,serine O-acetyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009970,cellular response to sulfate starvation; GO:0016412,serine O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019344,cysteine biosynthetic process;	cysE; serine O-acetyltransferase [EC:2.3.1.30]; K00640;	NP_175988.1 serine acetyltransferase 2;1 [Arabidopsis thaliana]	113	101	57	64
AT1G56110	transcription only	1.5444811010298944	0.4782060886693915	AT1G56110	--	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex;	NOP56; nucleolar protein 56; K14564;	NP_176007.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	1470	1101	1411	964
AT1G56160	transcription only	2.235935299231582	0.5114669036062626	AT1G56160	MYB	GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0010043,response to zinc ion; GO:0010468,regulation of gene expression; GO:0019748,secondary metabolic process; GO:0046686,response to cadmium ion; GO:0051365,cellular response to potassium ion starvation; GO:0055065,metal ion homeostasis; GO:1990359,stress response to zinc ion; GO:1990532,stress response to nickel ion; GO:1990641,response to iron ion starvation;	--	NP_176012.1 myb domain protein 72 [Arabidopsis thaliana]	20	4	0	19
AT1G61520	transcription only	-1.280703868105332	-0.03884604458383843	AT1G61520	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA3; light-harvesting complex I chlorophyll a/b binding protein 3; K08909;	NP_001185280.1 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]	6180	5366	4219	3223
AT1G61600	transcription only	-1.8203549250786029	0.7129450059902739	AT1G61600	--	--	--	NP_176354.1 DUF1262 family protein (DUF1262) [Arabidopsis thaliana]	16	0	8	8
AT1G62850	transcription only	1.2785824275174993	-0.16793288962705238	AT1G62850	--	GO:0003747,translation release factor activity; GO:0005634,nucleus; GO:0006415,translational termination;	--	NP_001077760.1 Class I peptide chain release factor [Arabidopsis thaliana]	30	33	19	18
AT1G63980	transcription only	1.0398847904801254	0.3933768793026948	AT1G63980	--	GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0042127,regulation of cell population proliferation; GO:0042254,ribosome biogenesis; GO:0042274,ribosomal small subunit biogenesis; GO:0090069,regulation of ribosome biogenesis;	--	NP_564820.1 D111/G-patch domain-containing protein [Arabidopsis thaliana]	93	77	91	58
AT1G64510	transcription only	-1.6894264822234364	-0.8004462898993016	AT1G64510	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6; K02990;	NP_176632.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	387	404	201	107
AT1G64710	transcription only	-1.9967171272604431	0.34583877254758566	AT1G64710	--	GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity;	E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1]; K00001;	NP_176652.3 GroES-like zinc-binding alcohol dehydrogenase family protein [Arabidopsis thaliana]	15	18	21	8
AT1G64790	transcription only	6.233523756689867	0.22042095119690625	AT1G64790	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009627,systemic acquired resistance; GO:0009682,induced systemic resistance; GO:0019887,protein kinase regulator activity; GO:0019901,protein kinase binding; GO:0033674,positive regulation of kinase activity; GO:0034198,cellular response to amino acid starvation; GO:0042742,defense response to bacterium; GO:0043022,ribosome binding; GO:0045087,innate immune response;	--	NP_001322207.1 ILITYHIA [Arabidopsis thaliana]	731	744	630	510
AT1G65010	transcription only	-1.1064635677159549	-0.05480549908666592	AT1G65010	--	GO:0005875,microtubule associated complex; GO:0007131,reciprocal meiotic recombination; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_176681.4 WEB family protein (DUF827) [Arabidopsis thaliana]	545	475	326	316
AT1G65590	transcription only	2.072196025230244	-0.3328148621719339	AT1G65590	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004563,beta-N-acetylhexosaminidase activity; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0015929,hexosaminidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030203,glycosaminoglycan metabolic process; GO:0102148,N-acetyl-beta-D-galactosaminidase activity;	HEXA_B; hexosaminidase [EC:3.2.1.52]; K12373;	NP_176737.2 beta-hexosaminidase 3 [Arabidopsis thaliana]	133	162	116	46
AT1G67820	transcription only	-1.8242377208840597	-0.02063604889383052	AT1G67820	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_176948.2 Protein phosphatase 2C family protein [Arabidopsis thaliana]	18	31	15	17
AT1G68010	transcription only	-1.8628014680978584	-0.6468801004310262	AT1G68010	--	GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008266,poly(U) RNA binding; GO:0008465,glycerate dehydrogenase activity; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0042631,cellular response to water deprivation; GO:0048046,apoplast; GO:0051287,NAD binding; GO:0071482,cellular response to light stimulus;	HPR1; glycerate dehydrogenase [EC:1.1.1.29]; K15893;	NP_176968.1 hydroxypyruvate reductase [Arabidopsis thaliana]	908	954	458	336
AT1G68760	transcription only	1.095819891767457	0.5776361319022901	AT1G68760	--	GO:0000210,NAD+ diphosphatase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006203,dGTP catabolic process; GO:0006974,cellular response to DNA damage stimulus; GO:0008413,8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0019177,dihydroneopterin triphosphate pyrophosphohydrolase activity; GO:0035529,NADH pyrophosphatase activity; GO:0035539,8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity; GO:0046872,metal ion binding;	--	NP_177044.1 nudix hydrolase 1 [Arabidopsis thaliana]	27	16	29	14
AT1G69060	transcription only	1.2399546119715024	0.9042134127725684	AT1G69060	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function;	--	NP_849864.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	24	15	33	16
AT1G69160	transcription only	-1.1021111478886991	0.07516132786717403	AT1G69160	--	GO:0005886,plasma membrane; GO:0009734,auxin-activated signaling pathway; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0016020,membrane; GO:0060918,auxin transport;	--	NP_564952.1 suppressor [Arabidopsis thaliana]	20	25	14	17
AT1G69260	transcription only	1.179714853832583	-0.3107243376855939	AT1G69260	--	GO:0005634,nucleus; GO:0007165,signal transduction; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_564956.1 ABI five binding protein [Arabidopsis thaliana]	15	8	1	10
AT1G70330	transcription only	1.409421220088671	0.0496484393686212	AT1G70330	--	GO:0000325,plant-type vacuole; GO:0005337,nucleoside transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1901642,nucleoside transmembrane transport;	SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3; K15014;	NP_564987.2 equilibrative nucleotide transporter 1 [Arabidopsis thaliana]	429	384	344	219
AT1G70600	transcription only	1.1418460868287126	0.6866308630386553	AT1G70600	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae; K02900;	NP_177217.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]	526	551	642	510
AT1G71440	transcription only	1.7925943628202132	-0.314366247509403	AT1G71440	--	GO:0000226,microtubule cytoskeleton organization; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0007021,tubulin complex assembly; GO:0007023,post-chaperonin tubulin folding pathway; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0043014,alpha-tubulin binding;	--	NP_565017.1 tubulin folding cofactor E / Pfifferling (PFI) [Arabidopsis thaliana]	121	90	70	43
AT1G72275	transcription only	-2.417933920743007	-0.3507986808890616	AT1G72275	--	GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0035098,ESC/E(Z) complex; GO:0035102,PRC1 complex; GO:0046872,metal ion binding;	--	NP_001320443.1 LOW protein: nuclease-like protein [Arabidopsis thaliana]	13	7	10	1
AT1G72360	transcription only	1.485125958012213	0.08173017451993503	AT1G72360	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009723,response to ethylene; GO:0009873,ethylene-activated signaling pathway; GO:0034059,response to anoxia; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0071369,cellular response to ethylene stimulus; GO:0071454,cellular response to anoxia; GO:0071456,cellular response to hypoxia;	--	NP_001077812.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	10	5	4	6
AT1G73200	transcription only	-1.6231114300313112	-0.38143957305766624	AT1G73200	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_177463.1 testis-expressed sequence 2-like protein (DUF2404) [Arabidopsis thaliana]	130	89	71	41
AT1G73970	transcription only	1.158275088593809	-0.9437905646131224	AT1G73970	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_177537.2 obscurin-like protein [Arabidopsis thaliana]	280	116	64	67
AT1G74580	transcription only	1.2899517522763606	0.5055412964330896	AT1G74580	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_001322154.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	16	23	20	17
AT1G74800	transcription only	1.08741261720961	0.29316389811352633	AT1G74800	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008378,galactosyltransferase activity; GO:0010405,arabinogalactan protein metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0018258,protein O-linked glycosylation via hydroxyproline; GO:0030246,carbohydrate binding; GO:0034645,cellular macromolecule biosynthetic process; GO:0044238,primary metabolic process; GO:0080147,root hair cell development; GO:1901137,carbohydrate derivative biosynthetic process; GO:1990714,hydroxyproline O-galactosyltransferase activity;	--	NP_177618.2 Galactosyltransferase family protein [Arabidopsis thaliana]	86	81	78	58
AT1G75290	transcription only	-1.8498246701524992	-0.822662115884237	AT1G75290	--	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_001321702.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	23	24	6	11
AT1G75820	transcription only	-1.0909918424846334	-0.7708158814683854	AT1G75820	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009934,regulation of meristem structural organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0036289,peptidyl-serine autophosphorylation; GO:0043621,protein self-association; GO:0106310,protein serine kinase activity;	E2.7.1.-; kinase [EC:2.7.1.-]; K00924;	AAB58929.1 CLV1 receptor kinase [Arabidopsis thaliana]	137	91	57	32
AT1G76090	transcription only	-1.896582923792573	-0.1421169284251004	AT1G76090	--	GO:0003838,sterol 24-C-methyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008168,methyltransferase activity; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0030797,24-methylenesterol C-methyltransferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143]; K08242;	NP_177736.1 sterol methyltransferase 3 [Arabidopsis thaliana]	320	240	198	138
AT1G77122	transcription only	3.044378791453464	-0.2101063968323772	AT1G77122	--	GO:0008150,biological_process;	--	NP_849898.1 Uncharacterized protein family UPF0090 [Arabidopsis thaliana]	62	48	21	39
AT1G77400	transcription only	-1.7814178263053444	-0.1393912077558886	AT1G77400	--	--	--	NP_177864.1 extensin-like protein [Arabidopsis thaliana]	15	13	5	11
AT1G77940	transcription only	1.3518799459358204	0.7285610507915099	AT1G77940	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L30e, RPL30; large subunit ribosomal protein L30e; K02908;	NP_565164.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	947	849	1062	899
AT1G78000	transcription only	2.0660383764443635	-0.01310145466812824	AT1G78000	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0009970,cellular response to sulfate starvation; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_001321366.1 sulfate transporter 1;2 [Arabidopsis thaliana]	47	47	30	31
AT1G78040	transcription only	1.416564959116607	-0.39315398588076433	AT1G78040	--	GO:0005515,protein binding;	--	NP_001077838.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	3616	3591	1995	1640
AT1G78100	transcription only	1.0250653185212837	-0.19752895806659787	AT1G78100	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009736,cytokinin-activated signaling pathway; GO:0010540,basipetal auxin transport; GO:0010541,acropetal auxin transport; GO:0016567,protein ubiquitination;	--	NP_565169.1 F-box family protein [Arabidopsis thaliana]	100	84	65	42
AT1G78180	transcription only	2.9002691262037965	-0.08401452300520175	AT1G78180	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_565171.4 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	38	14	25	8
AT1G78770	transcription only	1.495252275859805	-0.0053838372415097	AT1G78770	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0007091,metaphase/anaphase transition of mitotic cell cycle; GO:0010087,phloem or xylem histogenesis; GO:0016567,protein ubiquitination; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0032875,regulation of DNA endoreduplication; GO:0045842,positive regulation of mitotic metaphase/anaphase transition; GO:0051301,cell division;	APC6, CDC16; anaphase-promoting complex subunit 6; K03353;	NP_565188.1 anaphase promoting complex 6 [Arabidopsis thaliana]	137	113	69	91
AT1G79040	transcription only	-1.0975879309935914	-0.8522729803716482	AT1G79040	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010270,photosystem II oxygen evolving complex assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042651,thylakoid membrane;	psbR; photosystem II 10kDa protein; K03541;	NP_178025.1 photosystem II subunit R [Arabidopsis thaliana]	5278	4399	1887	1632
AT1G79530	transcription only	-1.209459128533494	-0.0769106299502539	AT1G79530	--	GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006096,glycolytic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0048658,anther wall tapetum development; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0080022,primary root development; GO:0080144,amino acid homeostasis;	GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]; K00134;	NP_178071.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 [Arabidopsis thaliana]	427	402	271	246
AT1G79700	transcription only	1.3401215408335894	0.279649471067397	AT1G79700	AP2	GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045723,positive regulation of fatty acid biosynthetic process; GO:1901959,positive regulation of cutin biosynthetic process; GO:1904278,positive regulation of wax biosynthetic process;	--	NP_001077849.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	31	29	31	18
AT1G79720	transcription only	-1.5323823319965428	-0.3351217869762135	AT1G79720	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0048046,apoplast;	--	NP_565219.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	128	129	74	61
AT1G80310	transcription only	-1.0095924439460708	0.01081744288834108	AT1G80310	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0015098,molybdate ion transmembrane transporter activity; GO:0015689,molybdate ion transport; GO:0016020,membrane; GO:0090414,molybdate ion export from vacuole;	--	NP_178147.1 sulfate transmembrane transporter [Arabidopsis thaliana]	91	74	79	34
AT1G80760	transcription only	2.050563428950368	-0.7305429158648896	AT1G80760	--	GO:0005886,plasma membrane; GO:0015168,glycerol transmembrane transporter activity; GO:0015204,urea transmembrane transporter activity; GO:0015267,channel activity; GO:0015793,glycerol transmembrane transport; GO:0016020,membrane; GO:0035445,borate transmembrane transport; GO:0046713,borate transport; GO:0046715,active borate transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071918,urea transmembrane transport; GO:0080029,cellular response to boron-containing substance levels;	--	NP_178191.1 NOD26-like intrinsic protein 6;1 [Arabidopsis thaliana]	62	48	32	13
AT1G80850	transcription only	1.205800874752996	-0.19625881031427392	AT1G80850	--	GO:0003824,catalytic activity; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0008725,DNA-3-methyladenine glycosylase activity;	tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]; K01246;	NP_178200.1 DNA glycosylase superfamily protein [Arabidopsis thaliana]	53	41	30	24
AT1G80910	transcription only	1.0297144995055072	-0.31264960744321935	AT1G80910	--	GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0016192,vesicle-mediated transport; GO:0035658,Mon1-Ccz1 complex; GO:0043231,intracellular membrane-bounded organelle; GO:0050790,regulation of catalytic activity;	--	AAF14679.1 F23A5.27 [Arabidopsis thaliana]	56	68	39	28
AT2G01570	transcription only	-1.1211474036529387	-0.0969215558476133	AT2G01570	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009938,negative regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010187,negative regulation of seed germination; GO:0010218,response to far red light; GO:0010628,positive regulation of gene expression; GO:0033206,meiotic cytokinesis; GO:0042176,regulation of protein catabolic process; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:1900033,negative regulation of trichome patterning; GO:1905614,negative regulation of developmental vegetative growth; GO:1905622,negative regulation of leaf development; GO:1990841,promoter-specific chromatin binding; GO:2000033,regulation of seed dormancy process; GO:2000377,regulation of reactive oxygen species metabolic process;	DELLA; DELLA protein; K14494;	NP_178266.1 GRAS family transcription factor family protein [Arabidopsis thaliana]	312	359	216	199
AT2G01755	transcription only	-1.4308458577947547	-0.02484326373014612	AT2G01755	--	GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_001323453.1 hypothetical protein AT2G01755 [Arabidopsis thaliana]	12	4	5	5
AT2G02750	transcription only	1.2208669865688426	0.23190119826180475	AT2G02750	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle;	--	NP_178378.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	65	62	56	43
AT2G02760	transcription only	-1.531584538199353	-0.2832405179577665	AT2G02760	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016567,protein ubiquitination; GO:0016574,histone ubiquitination; GO:0016740,transferase activity; GO:0033523,histone H2B ubiquitination; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0061631,ubiquitin conjugating enzyme activity;	UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]; K10573;	NP_001288862.1 ubiquitin-conjugating enzyme E2 2 [Brassica rapa]	312	292	231	107
AT2G04039	transcription only	2.7168983617249616	0.06910197530110442	AT2G04039	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009579,thylakoid;	--	NP_565308.1 DUF2996 family protein [Arabidopsis thaliana]	8	14	11	5
AT2G04410	transcription only	-1.1477327339818668	0.563247289515277	AT2G04410	--	GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0009506,plasmodesma;	--	NP_178522.2 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]	87	104	88	97
AT2G16660	transcription only	-1.8910369998568943	0.8597735946105566	AT2G16660	--	GO:0016020,membrane;	--	NP_179257.1 Major facilitator superfamily protein [Arabidopsis thaliana]	564	469	715	527
AT2G17300	transcription only	-2.325542542561465	0.29856333108970884	AT2G17300	--	--	--	NP_179322.1 hypothetical protein AT2G17300 [Arabidopsis thaliana]	88	68	74	53
AT2G17695	transcription only	6.229215156618648	-0.1990758715274133	AT2G17695	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope;	--	NP_001118341.1 outer envelope protein [Arabidopsis thaliana]	30	45	25	19
AT2G17880	transcription only	1.087151320355102	-0.6637517032319963	AT2G17880	--	GO:0009507,chloroplast;	--	NP_179378.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	467	412	211	157
AT2G18670	transcription only	1.0248306182376512	0.5770125406461035	AT2G18670	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_179457.1 RING/U-box superfamily protein [Arabidopsis thaliana]	7	14	16	6
AT2G18960	transcription only	-1.2777894354969124	0.08422128883561918	AT2G18960	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0000325,plant-type vacuole; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008553,P-type proton-exporting transporter activity; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009737,response to abscisic acid; GO:0010119,regulation of stomatal movement; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0051453,regulation of intracellular pH; GO:0120029,proton export across plasma membrane; GO:1902600,proton transmembrane transport; GO:1990069,stomatal opening;	PMA1, PMA2; H+-transporting ATPase [EC:7.1.2.1]; K01535;	NP_179486.1 H[+]-ATPase 1 [Arabidopsis thaliana]	2053	1936	1608	1203
AT2G19180	transcription only	1.2913974015238134	0.627709737568999	AT2G19180	--	--	--	NP_001325144.1 hypothetical protein AT2G19180 [Arabidopsis thaliana]	21	6	11	15
AT2G19680	transcription only	2.1269194430036302	-0.4681821975720245	AT2G19680	--	GO:0000276,mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); GO:0005739,mitochondrion; GO:0006811,ion transport; GO:0015078,proton transmembrane transporter activity; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045263,proton-transporting ATP synthase complex, coupling factor F(o); GO:1902600,proton transmembrane transport;	ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g; K02140;	NP_001077919.1 Mitochondrial ATP synthase subunit G protein [Arabidopsis thaliana]	72	72	38	31
AT2G19710	transcription only	1.1686865200193892	0.4582849982992827	AT2G19710	--	GO:0003674,molecular_function; GO:0008104,protein localization; GO:0015031,protein transport;	--	NP_179561.2 Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]	70	88	91	56
AT2G19780	transcription only	-2.742007393662412	0.17810569148928368	AT2G19780	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_179568.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	84	64	55	54
AT2G20770	transcription only	-1.2568838733990269	0.1090841793994543	AT2G20770	--	GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0019898,extrinsic component of membrane; GO:0046872,metal ion binding;	--	NP_850003.1 GCR2-like 2 [Arabidopsis thaliana]	14	8	6	9
AT2G21340	transcription only	2.0479836508053335	-0.2996291286530539	AT2G21340	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_565509.4 MATE efflux family protein [Arabidopsis thaliana]	127	115	83	49
AT2G22330	transcription only	1.5221212180369623	0.32870058906835	AT2G22330	--	GO:0002229,defense response to oomycetes; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006569,tryptophan catabolic process; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009682,induced systemic resistance; GO:0009684,indoleacetic acid biosynthetic process; GO:0010112,regulation of systemic acquired resistance; GO:0010120,camalexin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019761,glucosinolate biosynthetic process; GO:0020037,heme binding; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0052544,defense response by callose deposition in cell wall;	CYP79B3; tryptophan N-monooxygenase [EC:1.14.14.156]; K11813;	NP_001323954.1 cytochrome P450, family 79, subfamily B, polypeptide 3 [Arabidopsis thaliana]	22	15	25	7
AT2G22670	transcription only	-1.8780820795808555	-0.01493474164791405	AT2G22670	--	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010311,lateral root formation; GO:0045892,negative regulation of DNA-templated transcription; GO:1901332,negative regulation of lateral root development;	IAA; auxin-responsive protein IAA; K14484;	NP_001077943.1 indoleacetic acid-induced protein 8 [Arabidopsis thaliana]	1198	1175	914	653
AT2G22870	transcription only	2.5396516191852943	0.6386177349423579	AT2G22870	--	GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0046872,metal ion binding;	--	NP_565543.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	29	43	51	26
AT2G23120	transcription only	1.834924260048343	-0.6153958126212721	AT2G23120	--	GO:0005773,vacuole; GO:0005829,cytosol;	--	NP_565548.1 Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana]	280	274	140	101
AT2G23290	transcription only	1.1169405032601771	-0.18359892013655993	AT2G23290	MYB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_179910.1 myb domain protein 70 [Arabidopsis thaliana]	46	50	30	26
AT2G23610	transcription only	1.3311177579292608	-0.9852766188576482	AT2G23610	--	GO:0005773,vacuole; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0031408,oxylipin biosynthetic process; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_179942.1 methyl esterase 3 [Arabidopsis thaliana]	19	25	9	6
AT2G24580	transcription only	-1.4876763625485732	-0.8380537410383307	AT2G24580	--	GO:0008115,sarcosine oxidase activity; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding;	PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7]; K00306;	NP_180034.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]	130	98	36	46
AT2G25800	transcription only	2.107478668624082	-0.3576151591635879	AT2G25800	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation;	--	NP_180151.3 elongation factor Ts (DUF810) [Arabidopsis thaliana]	341	304	197	138
AT2G25880	transcription only	-1.974489602092827	-0.01461299910758909	AT2G25880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_001325078.1 ataurora2 [Arabidopsis thaliana]	29	35	22	20
AT2G26180	transcription only	-1.1210952589577694	-0.8585426543836463	AT2G26180	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007105,cytokinesis, site selection; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0016020,membrane; GO:0016604,nuclear body; GO:0016607,nuclear speck;	--	NP_180187.1 IQ-domain 6 [Arabidopsis thaliana]	39	27	14	10
AT2G26440	transcription only	1.3388619077662371	-0.31436821466893833	AT2G26440	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0009617,response to bacterium; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	--	NP_180212.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	390	340	238	154
AT2G26975	transcription only	-1.3262467227420172	-0.7681986165105414	AT2G26975	--	GO:0000325,plant-type vacuole; GO:0005375,copper ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0035434,copper ion transmembrane transport;	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1; K14686;	NP_850091.1 Ctr copper transporter family [Arabidopsis thaliana]	51	21	8	18
AT2G28080	transcription only	-1.4314221920271364	-0.00932599261875019	AT2G28080	--	GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_180375.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	121	105	102	50
AT2G28650	transcription only	-1.033059993636498	0.19086672780683064	AT2G28650	--	GO:0000145,exocyst; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0006887,exocytosis; GO:0015031,protein transport;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_180433.1 exocyst subunit exo70 family protein H8 [Arabidopsis thaliana]	10	6	7	5
AT2G29180	transcription only	1.1191321846130915	-0.36392767982916013	AT2G29180	--	GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_180481.1 transmembrane protein [Arabidopsis thaliana]	18	47	22	13
AT2G29630	transcription only	-1.233930280169978	-0.5129101537022701	AT2G29630	--	GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010266,response to vitamin B1; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding;	thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]; K03147;	NP_001189634.1 thiaminC [Arabidopsis thaliana]	1025	1051	541	426
AT2G30770	transcription only	-2.1525324773494368	-0.26100698558539615	AT2G30770	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006952,defense response; GO:0016020,membrane; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016829,lyase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0047720,indoleacetaldoxime dehydratase activity;	CYP71A13; indoleacetaldoxime dehydratase [EC:4.99.1.6]; K11868;	NP_180635.3 cytochrome P450 family 71 polypeptide [Arabidopsis thaliana]	17	14	0	15
AT2G31410	transcription only	1.6789323758877874	0.660926353685236	AT2G31410	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process;	--	NP_565723.1 coiled-coil protein [Arabidopsis thaliana]	72	69	89	60
AT2G31560	transcription only	1.8451681375801232	-0.28093510770730395	AT2G31560	--	--	--	NP_001325346.1 signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana]	87	71	60	28
AT2G31890	transcription only	1.6388951238266576	-0.6479057099908818	AT2G31890	--	GO:0000963,mitochondrial RNA processing; GO:0003723,RNA binding; GO:0005759,mitochondrial matrix; GO:0006364,rRNA processing; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0035770,ribonucleoprotein granule; GO:0042644,chloroplast nucleoid; GO:0042646,plastid nucleoid; GO:0044528,regulation of mitochondrial mRNA stability; GO:1901259,chloroplast rRNA processing;	--	NP_850176.1 RAP [Arabidopsis thaliana]	99	96	43	39
AT2G32280	transcription only	-3.1024412610200116	0.14223324840235133	AT2G32280	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009855,determination of bilateral symmetry; GO:0010087,phloem or xylem histogenesis; GO:0010252,auxin homeostasis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0016020,membrane; GO:0048366,leaf development; GO:0048825,cotyledon development; GO:0051302,regulation of cell division;	--	NP_001323429.1 GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]	43	25	22	26
AT2G33845	transcription only	1.122385194816114	0.17809617974938774	AT2G33845	--	GO:0003729,mRNA binding; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process;	--	NP_565774.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	56	92	69	45
AT2G34420	transcription only	-1.3531022475004335	-0.9214443624443652	AT2G34420	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_565786.1 photosystem II light harvesting complex protein B1B2 [Arabidopsis thaliana]	2578	2523	962	818
AT2G35370	transcription only	-1.2542149327518526	-0.6807869559823556	AT2G35370	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005960,glycine cleavage complex; GO:0009249,protein lipoylation; GO:0009579,thylakoid; GO:0019464,glycine decarboxylation via glycine cleavage system;	gcvH, GCSH; glycine cleavage system H protein; K02437;	NP_181080.1 glycine decarboxylase complex H [Arabidopsis thaliana]	325	340	166	112
AT2G35820	transcription only	-1.798919183206186	0.13576041205322598	AT2G35820	--	GO:0004848,ureidoglycolate hydrolase activity; GO:0005829,cytosol; GO:0016787,hydrolase activity;	--	NP_001325071.1 ureidoglycolate hydrolase [Arabidopsis thaliana]	50	33	24	34
AT2G37230	transcription only	-2.287774225446055	0.2886184102866584	AT2G37230	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009409,response to cold; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane;	--	NP_181260.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	421	352	321	297
AT2G37975	transcription only	1.4310367007368776	0.7202254096185344	AT2G37975	--	GO:0000139,Golgi membrane; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0030134,COPII-coated ER to Golgi transport vesicle;	--	NP_001318371.1 Yos1-like protein [Arabidopsis thaliana]	18	20	25	17
AT2G38480	transcription only	1.4236292313621266	0.4179540419840851	AT2G38480	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_565891.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	29	53	36	37
AT2G39435	transcription only	1.3230846562599523	0.5436897788831946	AT2G39435	--	--	--	NP_001189712.1 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]	7	10	6	10
AT2G39800	transcription only	1.717083027396109	0.41826325954517735	AT2G39800	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004349,glutamate 5-kinase activity; GO:0004350,glutamate-5-semialdehyde dehydrogenase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006561,proline biosynthetic process; GO:0006979,response to oxidative stress; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009084,glutamine family amino acid biosynthetic process; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009555,pollen development; GO:0009651,response to salt stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0016740,transferase activity; GO:0017084,delta1-pyrroline-5-carboxylate synthetase activity; GO:0042538,hyperosmotic salinity response; GO:0048364,root development; GO:0055129,L-proline biosynthetic process;	ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase [EC:2.7.2.11 1.2.1.41]; K12657;	NP_001189715.1 delta1-pyrroline-5-carboxylate synthase 1 [Arabidopsis thaliana]	1289	1225	1216	1005
AT2G40200	transcription only	1.045461832317456	0.1404202618538187	AT2G40200	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity;	--	NP_181549.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	16	5	9	6
AT2G40770	transcription only	1.0757652360628098	-0.9910142910702768	AT2G40770	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006338,chromatin remodeling; GO:0008150,biological_process; GO:0046872,metal ion binding; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_001318395.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]	84	60	29	19
AT2G41680	transcription only	1.0001662800123796	-0.20528835504948495	AT2G41680	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0010581,regulation of starch biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0019430,removal of superoxide radicals; GO:0042744,hydrogen peroxide catabolic process; GO:0042802,identical protein binding; GO:0043085,positive regulation of catalytic activity; GO:0045454,cell redox homeostasis;	trxB, TRR; thioredoxin reductase (NADPH) [EC:1.8.1.9]; K00384;	CAD5321071.1 unnamed protein product [Arabidopsis thaliana]	178	155	118	75
AT2G42690	transcription only	1.0624724851127332	-0.475824961742297	AT2G42690	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0009650,UV protection; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0071493,cellular response to UV-B;	--	NP_181797.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	285	217	146	94
AT2G42900	transcription only	-1.056968582007704	-0.2875499906512427	AT2G42900	--	GO:0005575,cellular_component;	--	NP_181818.1 Plant basic secretory protein (BSP) family protein [Arabidopsis thaliana]	43	49	16	32
AT2G42980	transcription only	-1.1037288324384085	0.04559338611815668	AT2G42980	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_181826.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	19	12	12	9
AT2G44730	transcription only	-1.0542587842010498	-0.20070707813928812	AT2G44730	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0019760,glucosinolate metabolic process;	--	NP_182001.1 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Arabidopsis thaliana]	121	98	72	54
AT2G46210	transcription only	-1.1660420350160825	0.07976232689231817	AT2G46210	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016717,oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; GO:0030148,sphingolipid biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0046872,metal ion binding; GO:0052631,sphingolipid delta-8 desaturase activity; GO:0070417,cellular response to cold;	SLD; sphingolipid 8-(E/Z)-desaturase [EC:1.14.19.29]; K21734;	NP_182144.1 Fatty acid/sphingolipid desaturase [Arabidopsis thaliana]	20	23	5	23
AT2G46225	transcription only	1.648166879886123	-0.00587371961872678	AT2G46225	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0010090,trichome morphogenesis; GO:0031209,SCAR complex; GO:0045010,actin nucleation; GO:0110165,cellular anatomical entity;	--	NP_001189756.1 ABI-1-like 1 [Arabidopsis thaliana]	98	126	82	67
AT2G46520	transcription only	-2.7222183753438833	0.20929464418116384	AT2G46520	--	GO:0005049,nuclear export signal receptor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006611,protein export from nucleus; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0031267,small GTPase binding;	CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter); K18423;	NP_182175.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter [Arabidopsis thaliana]	423	403	303	320
AT2G46590	transcription only	-1.0856025948087764	0.1255892385121926	AT2G46590	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009845,seed germination; GO:0010030,positive regulation of seed germination; GO:0010161,red light signaling pathway; GO:0010372,positive regulation of gibberellin biosynthetic process; GO:0046872,metal ion binding; GO:0071462,cellular response to water stimulus; GO:0071491,cellular response to red light;	--	NP_182182.2 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	51	51	42	32
AT2G46810	transcription only	1.364142081654353	0.9773450780931946	AT2G46810	bHLH	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009631,cold acclimation; GO:0042803,protein homodimerization activity; GO:0046983,protein dimerization activity;	--	NP_182204.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	13	8	20	8
AT2G47180	transcription only	1.0802951985185545	0.5583353422362913	AT2G47180	--	GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0006012,galactose metabolic process; GO:0006950,response to stress; GO:0006979,response to oxidative stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046872,metal ion binding; GO:0047216,inositol 3-alpha-galactosyltransferase activity;	GOLS; inositol 3-alpha-galactosyltransferase [EC:2.4.1.123]; K18819;	NP_182240.1 galactinol synthase 1 [Arabidopsis thaliana]	36	57	61	33
AT2G47210	transcription only	1.2478174147758438	0.20474013347169	AT2G47210	MYB_related	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000812,Swr1 complex; GO:0003677,DNA binding; GO:0003714,transcription corepressor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0035267,NuA4 histone acetyltransferase complex; GO:0043967,histone H4 acetylation; GO:0043968,histone H2A acetylation; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001323962.1 myb-like transcription factor family protein [Arabidopsis thaliana]	138	131	123	84
AT2G47980	transcription only	1.7829088595122926	-0.03509571883747015	AT2G47980	--	GO:0000278,mitotic cell cycle; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0007049,cell cycle; GO:0007059,chromosome segregation; GO:0007062,sister chromatid cohesion; GO:0008278,cohesin complex; GO:0051301,cell division; GO:0051455,monopolar spindle attachment to meiosis I kinetochore; GO:0051754,meiotic sister chromatid cohesion, centromeric;	STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2; K06671;	NP_566119.1 sister-chromatid cohesion protein 3 [Arabidopsis thaliana]	401	360	304	193
AT3G01050	transcription only	1.0894155572158295	-0.15312663769086535	AT3G01050	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_001319438.1 membrane-anchored ubiquitin-fold protein 1 precursor [Arabidopsis thaliana]	18	9	10	6
AT3G01500	transcription only	-1.2246908622023358	-0.07261320366742789	AT3G01500	--	GO:0003729,mRNA binding; GO:0004089,carbonate dehydratase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010037,response to carbon dioxide; GO:0010119,regulation of stomatal movement; GO:0010319,stromule; GO:0015976,carbon utilization; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016829,lyase activity; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:2000122,negative regulation of stomatal complex development;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_186799.2 carbonic anhydrase 1 [Arabidopsis thaliana]	2216	2082	1401	1284
AT3G02170	transcription only	-1.3840201172909383	0.13788178680647234	AT3G02170	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0008017,microtubule binding; GO:0009826,unidimensional cell growth; GO:0051513,regulation of monopolar cell growth;	--	NP_566165.2 longifolia2 [Arabidopsis thaliana]	298	280	223	196
AT3G02200	transcription only	1.25975541915876	0.5447382815713361	AT3G02200	--	GO:0000502,proteasome complex; GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m;	--	NP_001319448.1 Proteasome component (PCI) domain protein [Arabidopsis thaliana]	371	312	389	273
AT3G02560	transcription only	-1.1113137327781637	0.7276869212508762	AT3G02560	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0009507,chloroplast; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0032040,small-subunit processome; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex;	RP-S7e, RPS7; small subunit ribosomal protein S7e; K02993;	NP_001319452.1 Ribosomal protein S7e family protein [Arabidopsis thaliana]	480	487	582	479
AT3G02570	transcription only	1.4681286636408004	-0.2116963978963864	AT3G02570	--	GO:0004476,mannose-6-phosphate isomerase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008270,zinc ion binding; GO:0009298,GDP-mannose biosynthetic process; GO:0009416,response to light stimulus; GO:0009793,embryo development ending in seed dormancy; GO:0010043,response to zinc ion; GO:0016853,isomerase activity; GO:0032025,response to cobalt ion; GO:0033591,response to L-ascorbic acid; GO:0046686,response to cadmium ion; GO:0046872,metal ion binding;	manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8]; K01809;	NP_186906.1 Mannose-6-phosphate isomerase, type I [Arabidopsis thaliana]	175	131	98	76
AT3G02780	transcription only	1.0215167962009557	0.29918758847909244	AT3G02780	--	GO:0004452,isopentenyl-diphosphate delta-isomerase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009240,isopentenyl diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009908,flower development; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016853,isomerase activity; GO:0046872,metal ion binding; GO:0050992,dimethylallyl diphosphate biosynthetic process;	idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]; K01823;	NP_186927.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 [Arabidopsis thaliana]	347	331	340	219
AT3G03910	transcription only	2.3553122391271653	-0.2579013764237635	AT3G03910	--	GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0051171,regulation of nitrogen compound metabolic process;	GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261;	NP_187041.1 glutamate dehydrogenase 3 [Arabidopsis thaliana]	59	70	51	23
AT3G04010	transcription only	-1.3313344664261422	0.1089822074266233	AT3G04010	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_187051.3 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	36	19	34	7
AT3G05010	transcription only	1.195511265560934	-0.3921357815899309	AT3G05010	--	GO:0002237,response to molecule of bacterial origin; GO:0004930,G protein-coupled receptor activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0008502,melatonin receptor activity; GO:0010015,root morphogenesis; GO:0016020,membrane; GO:0019236,response to pheromone; GO:0090333,regulation of stomatal closure; GO:1904408,melatonin binding;	--	NP_566244.1 Protein of unknown function, transmembrane-40 [Arabidopsis thaliana]	81	56	41	28
AT3G05060	transcription only	1.2966811477547082	0.8862728226327825	AT3G05060	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	NOP58; nucleolar protein 58; K14565;	NP_187157.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	479	470	672	496
AT3G05330	transcription only	-1.1566710816742316	0.4467960019231019	AT3G05330	--	GO:0000911,cytokinesis by cell plate formation; GO:0000914,phragmoplast assembly; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:2000694,regulation of phragmoplast microtubule organization;	--	NP_187184.2 cyclin family [Arabidopsis thaliana]	20	25	23	18
AT3G05750	transcription only	-1.9435440786844	0.4135357239812253	AT3G05750	--	GO:0000132,establishment of mitotic spindle orientation; GO:0000913,preprophase band assembly; GO:0009574,preprophase band;	--	NP_187226.2 serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]	48	37	44	31
AT3G05820	transcription only	1.5165380980874432	-0.1641325633330904	AT3G05820	--	GO:0004564,beta-fructofuranosidase activity; GO:0004575,sucrose alpha-glucosidase activity; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005987,sucrose catabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033926,glycopeptide alpha-N-acetylgalactosaminidase activity;	--	NP_001326532.1 invertase H [Arabidopsis thaliana]	49	36	34	17
AT3G05900	transcription only	1.3821650650211346	0.01423779068559611	AT3G05900	--	GO:0003674,molecular_function; GO:0005829,cytosol;	--	NP_187241.2 neurofilament protein-like protein [Arabidopsis thaliana]	557	542	431	309
AT3G05930	transcription only	-1.182180864144902	-0.5833368782142387	AT3G05930	--	GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development;	--	NP_187244.1 germin-like protein 8 [Arabidopsis thaliana]	216	142	90	67
AT3G06780	transcription only	1.267436366267749	-0.10160811620809942	AT3G06780	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_566293.1 glycine-rich protein [Arabidopsis thaliana]	72	70	61	29
AT3G07350	transcription only	1.2325178910534664	-0.20377654430108724	AT3G07350	--	GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0071456,cellular response to hypoxia;	--	NP_566303.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506) [Arabidopsis thaliana]	10	11	6	6
AT3G08660	transcription only	-1.4552722003764234	0.06608408392979218	AT3G08660	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001327872.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	7	10	7	5
AT3G08940	transcription only	-1.3496864838185505	-0.3822920972690037	AT3G08940	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding;	LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915;	NP_187506.1 light harvesting complex photosystem II [Arabidopsis thaliana]	1206	1290	650	612
AT3G09790	transcription only	-1.6019848295430288	-0.333924431739967	AT3G09790	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009505,plant-type cell wall; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	NP_001319513.1 ubiquitin 8 [Arabidopsis thaliana]	14	7	7	4
AT3G10060	transcription only	-1.4073818727486622	-0.4073219140982096	AT3G10060	--	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity;	--	NP_187617.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	103	118	67	45
AT3G10070	transcription only	-1.2821692032753955	0.17951195788429303	AT3G10070	--	GO:0000124,SAGA complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0017025,TBP-class protein binding; GO:0046695,SLIK (SAGA-like) complex; GO:0046982,protein heterodimerization activity; GO:0051123,RNA polymerase II preinitiation complex assembly;	TAF12; transcription initiation factor TFIID subunit 12; K03126;	NP_566367.1 TBP-associated factor 12 [Arabidopsis thaliana]	22	27	15	21
AT3G10130	transcription only	1.7015471234334587	-0.5105518787902146	AT3G10130	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0020037,heme binding; GO:0110165,cellular anatomical entity;	--	NP_187624.1 SOUL heme-binding family protein [Arabidopsis thaliana]	55	44	21	24
AT3G10180	transcription only	-2.599271752913218	0.05284204666188628	AT3G10180	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0016787,hydrolase activity;	--	NP_187629.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	62	39	46	24
AT3G10720	transcription only	2.2660249517753086	-0.3063860719035129	AT3G10720	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_187683.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	187	171	98	92
AT3G11110	transcription only	-1.9956732371713488	-0.9010067135190264	AT3G11110	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_187722.1 RING/U-box superfamily protein [Arabidopsis thaliana]	8	10	1	5
AT3G11470	transcription only	1.453503871169665	0.05181112208227043	AT3G11470	--	GO:0000287,magnesium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008897,holo-[acyl-carrier-protein] synthase activity; GO:0016740,transferase activity; GO:0018215,protein phosphopantetheinylation; GO:0019878,lysine biosynthetic process via aminoadipic acid;	LYS5, acpT; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]; K06133;	NP_187754.2 4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]	24	22	20	12
AT3G11810	transcription only	-4.19184542141857	0.24866266365872688	AT3G11810	--	GO:0016020,membrane;	--	NP_187787.1 transmembrane protein [Arabidopsis thaliana]	59	25	33	31
AT3G12400	transcription only	1.284675557892146	-0.1277603621859425	AT3G12400	--	GO:0000813,ESCRT I complex; GO:0005515,protein binding; GO:0005768,endosome; GO:0005769,early endosome; GO:0005770,late endosome; GO:0008333,endosome to lysosome transport; GO:0010091,trichome branching; GO:0015031,protein transport; GO:0032991,protein-containing complex; GO:0036211,protein modification process; GO:0043130,ubiquitin binding; GO:0051301,cell division; GO:0110165,cellular anatomical entity;	TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101; K12183;	NP_001327160.1 Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]	113	105	73	59
AT3G12480	transcription only	1.4619764629149528	0.679783960515637	AT3G12480	NF-YC	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity;	--	NP_187854.2 nuclear factor Y, subunit C11 [Arabidopsis thaliana]	46	42	61	34
AT3G12780	transcription only	-1.5111906684646204	-0.22701834952610864	AT3G12780	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004618,phosphoglycerate kinase activity; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010319,stromule; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019375,galactolipid biosynthetic process; GO:0043531,ADP binding; GO:0048046,apoplast;	PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3]; K00927;	NP_187884.1 phosphoglycerate kinase 1 [Arabidopsis thaliana]	1991	1899	1239	966
AT3G13060	transcription only	1.4053610843119513	-0.34108280683417286	AT3G13060	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_001327857.1 evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]	149	136	78	70
AT3G13230	transcription only	1.5086598207261002	0.9110193177715976	AT3G13230	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0008150,biological_process;	--	NP_001326485.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	123	135	176	146
AT3G13440	transcription only	-1.4624773008267562	0.6031111529719531	AT3G13440	--	GO:0003676,nucleic acid binding; GO:0005829,cytosol; GO:0006415,translational termination; GO:0006479,protein methylation; GO:0006807,nitrogen compound metabolic process; GO:0008168,methyltransferase activity; GO:0008276,protein methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0035657,eRF1 methyltransferase complex; GO:0043414,macromolecule methylation; GO:0044238,primary metabolic process; GO:0055072,iron ion homeostasis;	--	NP_001327233.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	13	15	14	14
AT3G14440	transcription only	-1.6886620975323885	-0.7677151159831366	AT3G14440	--	GO:0006970,response to osmotic stress; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009688,abscisic acid biosynthetic process; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0042538,hyperosmotic salinity response; GO:0045549,9-cis-epoxycarotenoid dioxygenase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840;	NP_188062.1 nine-cis-epoxycarotenoid dioxygenase 3 [Arabidopsis thaliana]	28	26	6	14
AT3G15040	transcription only	-3.7605898342348345	0.1076141333047082	AT3G15040	--	GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0010150,leaf senescence;	--	KAG7625290.1 Senescence regulator S40 [Arabidopsis thaliana x Arabidopsis arenosa]	130	95	103	59
AT3G15070	transcription only	1.2090535794251631	-0.158849795751625	AT3G15070	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0060776,simple leaf morphogenesis; GO:0061630,ubiquitin protein ligase activity;	--	NP_001189897.1 RING/U-box superfamily protein [Arabidopsis thaliana]	45	33	26	20
AT3G15260	transcription only	-2.666258451042992	0.04431166212654148	AT3G15260	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding;	--	NP_188144.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	36	56	47	19
AT3G15730	transcription only	-1.592246162011363	-0.6422945147921082	AT3G15730	--	GO:0003824,catalytic activity; GO:0004620,phospholipase activity; GO:0004630,phospholipase D activity; GO:0005096,GTPase activator activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0009395,phospholipid catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0009873,ethylene-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0010358,leaf shaping; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0031966,mitochondrial membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0050790,regulation of catalytic activity; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_188194.1 phospholipase D alpha 1 [Arabidopsis thaliana]	6134	5167	2395	2326
AT3G16250	transcription only	-1.332337041721805	0.6792179277033139	AT3G16250	--	GO:0005829,cytosol; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0140647,P450-containing electron transport chain;	--	NP_188246.1 NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]	84	89	102	82
AT3G16510	transcription only	1.6126389651090978	0.5856174519795029	AT3G16510	--	GO:0006952,defense response;	--	NP_188272.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	9	11	11	9
AT3G17030	transcription only	-2.406996900389733	0.2902065286024554	AT3G17030	--	GO:0003674,molecular_function;	--	NP_188328.5 Nucleic acid-binding proteins superfamily [Arabidopsis thaliana]	13	12	10	10
AT3G17640	transcription only	-1.5968149057212309	-0.281054229387492	AT3G17640	--	GO:0005515,protein binding;	--	NP_188391.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	18	20	18	4
AT3G17800	transcription only	-1.394105752761324	-0.6873454442599853	AT3G17800	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B;	--	NP_566588.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]	528	516	234	195
AT3G18035	transcription only	1.2787364072058125	0.19423919078272692	AT3G18035	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_188431.3 winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]	593	537	511	351
AT3G18750	transcription only	1.9068583298541495	-0.4720823866792128	AT3G18750	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	--	NP_001189928.1 with no lysine (K) kinase 6 [Arabidopsis thaliana]	37	33	11	21
AT3G18950	transcription only	-1.7165095983165313	-0.6990154618611358	AT3G18950	--	GO:0005515,protein binding;	--	NP_188525.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	7	12	5	3
AT3G19040	transcription only	-1.907752771567932	0.4672938065935271	AT3G19040	--	GO:0001091,RNA polymerase II general transcription initiation factor binding; GO:0004402,histone acetyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006325,chromatin organization; GO:0006366,transcription by RNA polymerase II; GO:0009416,response to light stimulus; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0016570,histone modification; GO:0016573,histone acetylation; GO:0017025,TBP-class protein binding; GO:0051123,RNA polymerase II preinitiation complex assembly;	TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]; K03125;	NP_001327580.1 histone acetyltransferase of the TAFII250 family 2 [Arabidopsis thaliana]	86	60	66	65
AT3G19240	transcription only	1.1525308470770808	0.16664171248120882	AT3G19240	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm;	--	NP_188555.1 Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]	140	118	111	81
AT3G20300	transcription only	-4.51106860590543	0.5172388519758608	AT3G20300	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_566658.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]	29	19	25	20
AT3G21360	transcription only	-2.150732587190885	-0.02278970594060111	AT3G21360	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_188773.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	30	40	25	21
AT3G21750	transcription only	-1.0776159250730937	-0.13701869421484106	AT3G21750	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_188812.1 UDP-glucosyl transferase 71B1 [Arabidopsis thaliana]	303	344	218	174
AT3G21790	transcription only	-1.4068030711922486	0.18820120938223475	AT3G21790	--	GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	BAB02841.1 UTP-glucose glucosyltransferase [Arabidopsis thaliana]	43	42	40	25
AT3G23490	transcription only	-3.177408972839813	0.1934861207851986	AT3G23490	--	GO:0003677,DNA binding; GO:0005829,cytosol; GO:0008824,cyanate hydratase activity; GO:0009439,cyanate metabolic process; GO:0009440,cyanate catabolic process; GO:0009651,response to salt stress; GO:0016020,membrane; GO:0016829,lyase activity; GO:0042802,identical protein binding;	cynS; cyanate lyase [EC:4.2.1.104]; K01725;	NP_001327887.1 cyanase [Arabidopsis thaliana]	107	133	126	62
AT3G23540	transcription only	-1.229430133270655	-0.14785990178169106	AT3G23540	--	GO:0003674,molecular_function;	--	NP_001327699.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	71	68	51	33
AT3G24730	transcription only	-1.5367575995512854	0.704057608510932	AT3G24730	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006376,mRNA splice site selection; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex;	--	NP_189117.2 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]	18	7	13	13
AT3G25520	transcription only	1.182926805684828	0.33650782459045536	AT3G25520	--	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0006913,nucleocytoplasmic transport; GO:0008097,5S rRNA binding; GO:0009507,chloroplast; GO:0009955,adaxial/abaxial pattern specification; GO:0009965,leaf morphogenesis; GO:0010015,root morphogenesis; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:0051301,cell division; GO:1990904,ribonucleoprotein complex;	RP-L5e, RPL5; large subunit ribosomal protein L5e; K02932;	NP_001327862.1 ribosomal protein L5 [Arabidopsis thaliana]	2163	1929	1858	1549
AT3G25590	transcription only	1.2070443464705984	-0.06052960819639162	AT3G25590	--	GO:0003674,molecular_function;	--	NP_189187.2 micronuclear linker histone polyprotein-like protein [Arabidopsis thaliana]	12	38	19	14
AT3G26570	transcription only	1.1443114307098268	0.03095326108967394	AT3G26570	--	GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0005829,cytosol; GO:0006817,phosphate ion transport; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009673,low-affinity phosphate transmembrane transporter activity; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0015293,symporter activity; GO:0016020,membrane; GO:0035435,phosphate ion transmembrane transport; GO:0055085,transmembrane transport;	--	NP_189289.2 phosphate transporter 2;1 [Arabidopsis thaliana]	622	397	359	318
AT3G27180	transcription only	1.8897940746231956	0.8397353424560519	AT3G27180	--	GO:0001510,RNA methylation; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_189354.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	58	71	70	81
AT3G27230	transcription only	1.1985971348596072	-0.7271671836510373	AT3G27230	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0032259,methylation;	--	NP_566813.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	150	124	54	54
AT3G27350	transcription only	1.581697883452136	0.3172690099118146	AT3G27350	--	--	--	NP_001189988.1 transcriptional regulator ATRX-like protein [Arabidopsis thaliana]	78	48	59	44
AT3G27700	transcription only	-1.0424289361094237	0.34374626543072767	AT3G27700	--	GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0046872,metal ion binding;	--	NP_189407.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	74	48	39	59
AT3G28180	transcription only	-1.0020639025670224	-0.4670784128051725	AT3G28180	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042803,protein homodimerization activity; GO:0048868,pollen tube development; GO:0071555,cell wall organization; GO:0099402,plant organ development;	--	NP_566835.1 Cellulose-synthase-like C4 [Arabidopsis thaliana]	232	161	128	63
AT3G28900	transcription only	7.53458528602676	0.3339837761989158	AT3G28900	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042254,ribosome biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L34e, RPL34; large subunit ribosomal protein L34e; K02915;	NP_189532.1 Ribosomal protein L34e superfamily protein [Arabidopsis thaliana]	290	263	277	188
AT3G28930	transcription only	-1.6445976645454348	0.32251863225826327	AT3G28930	--	GO:0005829,cytosol; GO:0009617,response to bacterium; GO:0016740,transferase activity; GO:0016746,acyltransferase activity;	--	NP_001326184.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]	57	31	52	22
AT3G43270	transcription only	1.260208819931186	-0.01851469302943144	AT3G43270	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_189913.3 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	1050	941	684	608
AT3G44110	transcription only	-1.0950558312959464	-0.2597222618205494	AT3G44110	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009911,positive regulation of flower development; GO:0016020,membrane; GO:0030544,Hsp70 protein binding; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0043462,regulation of ATP-dependent activity; GO:0046872,metal ion binding; GO:0048573,photoperiodism, flowering; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	DNAJA2; DnaJ homolog subfamily A member 2; K09503;	NP_189997.1 DNAJ homologue 3 [Arabidopsis thaliana]	1204	1025	560	642
AT3G45140	transcription only	-1.2246857583557869	0.32829079339063444	AT3G45140	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0009695,jasmonic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0009941,chloroplast envelope; GO:0010597,green leaf volatile biosynthetic process; GO:0016165,linoleate 13S-lipoxygenase activity; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0031408,oxylipin biosynthetic process; GO:0034440,lipid oxidation; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0080027,response to herbivore; GO:1901149,salicylic acid binding;	LOX2S; lipoxygenase [EC:1.13.11.12]; K00454;	NP_566875.1 lipoxygenase 2 [Arabidopsis thaliana]	7418	7766	7296	5431
AT3G45290	transcription only	-1.2582462022857337	-0.4217024508950859	AT3G45290	--	GO:0005516,calmodulin binding; GO:0006952,defense response; GO:0009607,response to biotic stimulus; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_566879.1 Seven transmembrane MLO family protein [Arabidopsis thaliana]	44	39	23	18
AT3G46550	transcription only	-1.0927246807314317	-0.0094322935311633	AT3G46550	--	GO:0005886,plasma membrane; GO:0007155,cell adhesion; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009897,external side of plasma membrane; GO:0010192,mucilage biosynthetic process; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0048354,mucilage biosynthetic process involved in seed coat development;	--	NP_190239.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	231	141	158	88
AT3G46600	transcription only	-1.3938600931790708	-0.4666481566190958	AT3G46600	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_001319695.1 GRAS family transcription factor [Arabidopsis thaliana]	60	61	26	31
AT3G46610	transcription only	1.785650788919006	0.5320456645405137	AT3G46610	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006413,translational initiation; GO:0008494,translation activator activity; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0032544,plastid translation; GO:0043022,ribosome binding; GO:0045727,positive regulation of translation;	--	NP_001319696.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	40	21	35	23
AT3G46620	transcription only	-1.8822305166924869	0.3627422695504858	AT3G46620	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051865,protein autoubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_190246.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	109	80	85	74
AT3G46640	transcription only	-1.9816116929361136	0.22850373258601508	AT3G46640	G2-like	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0010468,regulation of gene expression; GO:0042752,regulation of circadian rhythm; GO:0042753,positive regulation of circadian rhythm; GO:0048511,rhythmic process;	--	NP_001030823.1 Homeodomain-like superfamily protein [Arabidopsis thaliana]	160	147	127	110
AT3G47060	transcription only	-1.037610987138367	-0.17121984125028397	AT3G47060	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	--	NP_566889.1 FTSH protease 7 [Arabidopsis thaliana]	76	93	60	41
AT3G47590	transcription only	-1.838498929744832	-0.13695437008542305	AT3G47590	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0008150,biological_process;	K06889; uncharacterized protein; K06889;	NP_190343.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	82	111	57	59
AT3G48330	transcription only	1.2494668211517732	-0.00465413316245096	AT3G48330	--	GO:0004719,protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; GO:0005737,cytoplasm; GO:0006479,protein methylation; GO:0007568,aging; GO:0008168,methyltransferase activity; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009845,seed germination; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0030091,protein repair; GO:0032259,methylation; GO:0036211,protein modification process;	E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]; K00573;	NP_680112.2 protein-l-isoaspartate methyltransferase 1 [Arabidopsis thaliana]	125	98	74	71
AT3G49601	transcription only	-1.116996274698065	0.0745003496130793	AT3G49601	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_001118799.1 pre-mRNA-splicing factor [Arabidopsis thaliana]	266	257	182	179
AT3G49940	transcription only	2.2230343019608103	0.17329550409796624	AT3G49940	LBD	GO:0005515,protein binding; GO:0010468,regulation of gene expression;	--	NP_190563.1 LOB domain-containing protein 38 [Arabidopsis thaliana]	17	26	15	17
AT3G50960	transcription only	1.5634991846122006	-0.23111145554885687	AT3G50960	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005874,microtubule; GO:0043622,cortical microtubule organization; GO:0048487,beta-tubulin binding;	--	NP_001325881.1 thioredoxin domain PLP3A-like protein [Arabidopsis thaliana]	31	41	28	14
AT3G52100	transcription only	-1.250332719337807	-0.2190052459132668	AT3G52100	--	GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0006351,DNA-templated transcription; GO:0009506,plasmodesma; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_001327259.1 RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]	37	54	32	21
AT3G52230	transcription only	-1.0275445839618462	0.8682761232373197	AT3G52230	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope;	--	NP_566963.1 hypothetical protein AT3G52230 [Arabidopsis thaliana]	207	145	241	182
AT3G52380	transcription only	1.000895831963273	-0.1888015887757805	AT3G52380	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0031425,chloroplast RNA processing; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_190806.1 chloroplast RNA-binding protein 33 [Arabidopsis thaliana]	199	176	113	103
AT3G53380	transcription only	-1.5806518119808548	-0.23737256108165147	AT3G53380	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_190906.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana]	70	60	47	27
AT3G53950	transcription only	-1.2389731060966327	0.05283244693072992	AT3G53950	--	GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190963.1 glyoxal oxidase-related protein [Arabidopsis thaliana]	97	85	60	63
AT3G54600	transcription only	-2.3942947764863605	0.5258341838954474	AT3G54600	--	GO:0003674,molecular_function; GO:0005829,cytosol;	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881;	NP_191023.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	74	69	69	66
AT3G54980	transcription only	1.0077872306865665	-0.0681479324231393	AT3G54980	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_001325869.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	82	54	42	42
AT3G56960	transcription only	3.509027293615188	-0.5906450636493759	AT3G56960	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0007164,establishment of tissue polarity; GO:0009827,plant-type cell wall modification; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016307,phosphatidylinositol phosphate kinase activity; GO:0016308,1-phosphatidylinositol-4-phosphate 5-kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0044238,primary metabolic process; GO:0046488,phosphatidylinositol metabolic process; GO:0046854,phosphatidylinositol phosphate biosynthetic process; GO:0071704,organic substance metabolic process; GO:0090406,pollen tube;	PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]; K00889;	KAG7634709.1 Phosphatidylinositol-4-phosphate 5-kinase core [Arabidopsis suecica]	36	38	9	22
AT3G56990	transcription only	1.4877449560040212	0.5929738556716003	AT3G56990	--	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009561,megagametogenesis; GO:0016020,membrane; GO:0032040,small-subunit processome;	--	NP_191258.2 embryo sac development arrest 7 [Arabidopsis thaliana]	126	84	128	82
AT3G57710	transcription only	-1.2463715503719606	-0.14912826064662943	AT3G57710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007166,cell surface receptor signaling pathway; GO:0009266,response to temperature stimulus; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:1900426,positive regulation of defense response to bacterium;	--	NP_191330.1 Protein kinase superfamily protein [Arabidopsis thaliana]	48	34	24	24
AT3G57830	transcription only	-1.3077996819940716	-0.34703028487977333	AT3G57830	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001326829.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	67	75	45	30
AT3G57910	transcription only	-1.191549602526204	-0.7048112630430613	AT3G57910	--	GO:0000776,kinetochore; GO:0003676,nucleic acid binding; GO:0008150,biological_process;	--	NP_191350.1 D111/G-patch domain-containing protein [Arabidopsis thaliana]	36	18	9	12
AT3G61070	transcription only	1.6385183191482742	-0.1357343714289595	AT3G61070	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0005829,cytosol; GO:0007031,peroxisome organization; GO:0007623,circadian rhythm; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size;	--	NP_001078322.1 peroxin 11E [Arabidopsis thaliana]	180	235	147	107
AT3G61470	transcription only	-1.1942982724697089	-0.31895309839460684	AT3G61470	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA2; light-harvesting complex I chlorophyll a/b binding protein 2; K08908;	NP_191706.2 photosystem I light harvesting complex protein [Arabidopsis thaliana]	2075	1979	1196	957
AT3G61540	transcription only	-3.376926107849828	0.401234551474238	AT3G61540	--	GO:0004177,aminopeptidase activity; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_191713.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	84	92	88	67
AT3G62290	transcription only	-1.3738730399514354	-0.1898761285858855	AT3G62290	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0016004,phospholipase activator activity; GO:0016192,vesicle-mediated transport; GO:0050790,regulation of catalytic activity;	ARF1_2; ADP-ribosylation factor 1/2; K07937;	NP_001190161.1 ADP-ribosylation factor A1E [Arabidopsis thaliana]	1132	1056	691	576
AT3G62650	transcription only	1.0093953923311123	0.30827275947616545	AT3G62650	--	--	--	NP_191824.1 hypothetical protein AT3G62650 [Arabidopsis thaliana]	435	388	397	281
AT3G62720	transcription only	-1.593907184389572	0.33585895538839017	AT3G62720	--	GO:0000139,Golgi membrane; GO:0000271,polysaccharide biosynthetic process; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006486,protein glycosylation; GO:0009969,xyloglucan biosynthetic process; GO:0010411,xyloglucan metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0033843,xyloglucan 6-xylosyltransferase activity; GO:0035252,UDP-xylosyltransferase activity; GO:0046872,metal ion binding;	--	NP_001030917.1 xylosyltransferase 1 [Arabidopsis thaliana]	132	146	122	110
AT3G63130	transcription only	-1.118998627727685	0.13312891307204436	AT3G63130	--	GO:0000911,cytokinesis by cell plate formation; GO:0005096,GTPase activator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0006606,protein import into nucleus; GO:0009504,cell plate; GO:0009524,phragmoplast; GO:0016020,membrane; GO:0031965,nuclear membrane; GO:0032153,cell division site; GO:0050790,regulation of catalytic activity;	RANGAP1; Ran GTPase-activating protein 1; K14319;	NP_001190166.1 RAN GTPase activating protein 1 [Arabidopsis thaliana]	358	318	267	222
AT3G63440	transcription only	-1.2419246692051988	-0.21329955584621324	AT3G63440	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009690,cytokinin metabolic process; GO:0010103,stomatal complex morphogenesis; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding;	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279;	NP_191903.3 cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana]	45	21	21	16
AT3G63450	transcription only	-2.0796018026712586	0.4441479649948421	AT3G63450	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding;	--	NP_001190170.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	38	38	35	33
AT3G63470	transcription only	1.0057583544054345	-0.5212585274001417	AT3G63470	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_191906.1 serine carboxypeptidase-like 40 [Arabidopsis thaliana]	166	171	98	60
AT3G63540	transcription only	-1.415451533171696	-0.3414428478050164	AT3G63540	--	GO:0005509,calcium ion binding; GO:0009523,photosystem II; GO:0009654,photosystem II oxygen evolving complex; GO:0015979,photosynthesis; GO:0019898,extrinsic component of membrane;	--	NP_001190172.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein), partial [Arabidopsis thaliana]	311	256	158	136
AT4G00170	transcription only	4.158207637539667	-0.08508848486036068	AT4G00170	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization;	--	NP_567153.1 Plant VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana]	47	69	28	43
AT4G01037	transcription only	-1.282858618885016	0.3738168761071889	AT4G01037	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015979,photosynthesis;	--	NP_001118908.1 Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]	167	136	124	131
AT4G01070	transcription only	-1.0654733321426662	-0.07127895644717137	AT4G01070	--	GO:0006805,xenobiotic metabolic process; GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0042178,xenobiotic catabolic process; GO:0050505,hydroquinone glucosyltransferase activity;	--	NP_192016.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	195	215	130	127
AT4G01370	transcription only	-1.3207894150933646	-0.24946554237745003	AT4G01370	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0002376,immune system process; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0006972,hyperosmotic response; GO:0007112,male meiosis cytokinesis; GO:0009409,response to cold; GO:0009504,cell plate; GO:0009555,pollen development; GO:0009620,response to fungus; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009861,jasmonic acid and ethylene-dependent systemic resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009868,jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0042539,hypotonic salinity response; GO:0043622,cortical microtubule organization; GO:0045087,innate immune response; GO:0071244,cellular response to carbon dioxide; GO:0090333,regulation of stomatal closure; GO:0106310,protein serine kinase activity;	MPK4; mitogen-activated protein kinase 4 [EC:2.7.11.24]; K20600;	NP_192046.1 MAP kinase 4 [Arabidopsis thaliana]	221	202	134	102
AT4G01690	transcription only	1.202644863209843	-9.929844889879787e-4	AT4G01690	--	GO:0004729,oxygen-dependent protoporphyrinogen oxidase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity;	PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]; K00231;	NP_192078.1 Flavin containing amine oxidoreductase family [Arabidopsis thaliana]	341	304	231	194
AT4G01800	transcription only	1.432338745605671	0.09874209027448888	AT4G01800	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009646,response to absence of light; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010090,trichome morphogenesis; GO:0010109,regulation of photosynthesis; GO:0015031,protein transport; GO:0015462,ABC-type protein transporter activity; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0017038,protein import; GO:0071806,protein transmembrane transport;	secA; preprotein translocase subunit SecA [EC:7.4.2.8]; K03070;	NP_001328302.1 Albino or Glassy Yellow 1 [Arabidopsis thaliana]	461	468	386	278
AT4G01840	transcription only	1.2366537870452388	0.5187474677150423	AT4G01840	--	GO:0005267,potassium channel activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009705,plant-type vacuole membrane; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0022841,potassium ion leak channel activity; GO:0030322,stabilization of membrane potential; GO:0046872,metal ion binding; GO:0071805,potassium ion transmembrane transport;	--	NP_192093.1 Ca2+ activated outward rectifying K+ channel 5 [Arabidopsis thaliana]	20	29	31	17
AT4G02130	transcription only	-1.9128502750003928	0.0843454376273678	AT4G02130	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	--	NP_001031573.1 galacturonosyltransferase 6 [Arabidopsis thaliana]	90	99	67	65
AT4G02440	transcription only	1.6109402162475983	0.29543290267566863	AT4G02440	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009585,red, far-red light phototransduction; GO:0010017,red or far-red light signaling pathway; GO:0010099,regulation of photomorphogenesis; GO:0016567,protein ubiquitination; GO:0048366,leaf development; GO:0048573,photoperiodism, flowering;	--	NP_192153.1 F-box family protein [Arabidopsis thaliana]	88	96	93	59
AT4G02610	transcription only	1.281783492808904	0.4034266560809128	AT4G02610	--	GO:0000162,tryptophan biosynthetic process; GO:0004834,tryptophan synthase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009851,auxin biosynthetic process; GO:0016829,lyase activity; GO:0033984,indole-3-glycerol-phosphate lyase activity;	trpA; tryptophan synthase alpha chain [EC:4.2.1.20]; K01695;	NP_192170.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	209	140	176	128
AT4G05180	transcription only	-1.235842319427374	-0.927799679803194	AT4G05180	--	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast;	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901;	NP_001319873.1 photosystem II subunit Q-2 [Arabidopsis thaliana]	2245	1949	819	639
AT4G05190	transcription only	-1.3863551283434072	-0.40961949152468274	AT4G05190	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0007018,microtubule-based movement; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0016887,ATP hydrolysis activity; GO:0051225,spindle assembly; GO:0051301,cell division;	--	NP_192428.2 kinesin 5 [Arabidopsis thaliana]	83	82	60	25
AT4G09000	transcription only	-1.1536646053913286	-0.6006933240336635	AT4G09000	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016020,membrane; GO:0019222,regulation of metabolic process; GO:0045309,protein phosphorylated amino acid binding; GO:0048046,apoplast;	YWHAE; 14-3-3 protein epsilon; K06630;	NP_001154216.1 general regulatory factor 1 [Arabidopsis thaliana]	1586	1552	777	598
AT4G11450	transcription only	1.0272961408343724	0.5972108858097392	AT4G11450	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_192884.1 bromo-adjacent domain protein, putative (DUF3527) [Arabidopsis thaliana]	50	23	47	26
AT4G12290	transcription only	-1.1483324728264206	0.1242983965479565	AT4G12290	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009753,response to jasmonic acid; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; GO:1903426,regulation of reactive oxygen species biosynthetic process;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_192966.5 Copper amine oxidase family protein [Arabidopsis thaliana]	756	636	561	441
AT4G12300	transcription only	-1.2625254179875212	-0.25453296777579776	AT4G12300	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_192967.1 cytochrome P450, family 706, subfamily A, polypeptide 4 [Arabidopsis thaliana]	109	89	53	55
AT4G12800	transcription only	-1.8912666491766992	0.4272083227250229	AT4G12800	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0031969,chloroplast membrane;	psaL; photosystem I subunit XI; K02699;	NP_001328992.1 photosystem I subunit l [Arabidopsis thaliana]	3690	3748	3811	2855
AT4G12840	transcription only	-1.3811190093882126	-0.16577280583590534	AT4G12840	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001154227.2 GTPase Der (DUF707) [Arabidopsis thaliana]	57	30	31	20
AT4G13160	transcription only	2.494012283094066	0.47944491138536816	AT4G13160	--	GO:0004674,protein serine/threonine kinase activity; GO:0005575,cellular_component; GO:0016020,membrane; GO:0046777,protein autophosphorylation; GO:0080115,myosin XI tail binding;	--	NP_193052.1 zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]	21	9	25	4
AT4G13510	transcription only	-1.2240797741760092	-0.08151585655163823	AT4G13510	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006812,cation transport; GO:0008519,ammonium transmembrane transporter activity; GO:0009506,plasmodesma; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0043621,protein self-association; GO:0051258,protein polymerization; GO:0071705,nitrogen compound transport; GO:0072488,ammonium transmembrane transport; GO:0080181,lateral root branching; GO:0097272,ammonium homeostasis; GO:0110067,ammonium transmembrane transporter complex;	--	NP_193087.1 ammonium transporter 1;1 [Arabidopsis thaliana]	507	401	324	243
AT4G13920	transcription only	-1.122997680206749	-0.6977358463089904	AT4G13920	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_567412.1 receptor like protein 50 [Arabidopsis thaliana]	15	13	4	7
AT4G13940	transcription only	-1.116996274698065	-0.4685564542777668	AT4G13940	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004013,adenosylhomocysteinase activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006346,DNA methylation-dependent heterochromatin formation; GO:0006730,one-carbon metabolic process; GO:0009506,plasmodesma; GO:0009793,embryo development ending in seed dormancy; GO:0016441,post-transcriptional gene silencing; GO:0016787,hydrolase activity; GO:0033353,S-adenosylmethionine cycle;	E3.3.1.1, ahcY; adenosylhomocysteinase [EC:3.3.1.1]; K01251;	NP_193130.1 S-adenosyl-L-homocysteine hydrolase [Arabidopsis thaliana]	8766	8067	4602	3475
AT4G14120	transcription only	-1.314557015585479	-0.4245912091498477	AT4G14120	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_193148.2 hypothetical protein AT4G14120 [Arabidopsis thaliana]	40	19	13	15
AT4G15490	transcription only	-1.6281492440986494	-0.620603775654229	AT4G15490	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0047218,hydroxycinnamate 4-beta-glucosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0050412,cinnamate beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_193284.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	116	110	52	45
AT4G15545	transcription only	-2.339570287998444	-0.1666729798759522	AT4G15545	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0010168,ER body; GO:0043621,protein self-association; GO:0080119,ER body organization;	--	NP_567470.1 PH-response transcription factor [Arabidopsis thaliana]	49	52	45	17
AT4G15630	transcription only	-1.1558315117270557	0.0712241422858237	AT4G15630	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043424,protein histidine kinase binding; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_567473.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	82	63	49	50
AT4G15780	transcription only	-1.584608408122028	0.02383171454014878	AT4G15780	--	GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport;	--	NP_193313.6 vesicle-associated membrane protein 724 [Arabidopsis thaliana]	30	29	18	21
AT4G17870	transcription only	1.1816151334292109	-0.5625248170235017	AT4G17870	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0044389,ubiquitin-like protein ligase binding; GO:0062049,protein phosphatase inhibitor complex; GO:0080163,regulation of protein serine/threonine phosphatase activity; GO:1902584,positive regulation of response to water deprivation;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_193521.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	69	89	53	21
AT4G18100	transcription only	1.1693019334153265	-0.07571912516607061	AT4G18100	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L32e, RPL32; large subunit ribosomal protein L32e; K02912;	NP_193544.1 Ribosomal protein L32e [Arabidopsis thaliana]	1067	928	688	561
AT4G18740	transcription only	1.4516324999030377	-0.1488972087355923	AT4G18740	--	GO:0003674,molecular_function; GO:0006353,DNA-templated transcription termination;	--	NP_974569.1 Rho termination factor [Arabidopsis thaliana]	23	10	4	14
AT4G19120	transcription only	-2.236659252293311	0.02817825757065922	AT4G19120	--	GO:0000138,Golgi trans cisterna; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_567575.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	634	635	520	347
AT4G21770	transcription only	1.0404051293998895	0.03942417421431228	AT4G21770	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_193908.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	65	25	35	25
AT4G21780	transcription only	-1.9127404306288232	0.5808235795486599	AT4G21780	--	--	--	NP_001328477.1 hypothetical protein AT4G21780 [Arabidopsis thaliana]	7	6	8	5
AT4G21810	transcription only	1.207621444938518	-0.9666559844185963	AT4G21810	--	GO:0000839,Hrd1p ubiquitin ligase ERAD-L complex; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006950,response to stress; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0051787,misfolded protein binding; GO:1990381,ubiquitin-specific protease binding;	DERL2_3; Derlin-2/3; K13989;	NP_193912.3 DERLIN-2.1 [Arabidopsis thaliana]	91	117	55	19
AT4G22320	transcription only	1.0412425208632414	-0.9499072158613652	AT4G22320	--	GO:0008150,biological_process;	--	NP_001190798.1 golgin family A protein [Arabidopsis thaliana]	39	40	20	8
AT4G22530	transcription only	1.8317717455005869	-0.21261285547008407	AT4G22530	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_001329270.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	68	66	50	28
AT4G23530	transcription only	1.0494668584659863	-0.40504550077711865	AT4G23530	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_194084.1 ROH1, putative (DUF793) [Arabidopsis thaliana]	45	30	20	17
AT4G23800	transcription only	2.8803137383378874	-0.19435614351267969	AT4G23800	--	GO:0000793,condensed chromosome; GO:0000794,condensed nuclear chromosome; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_194111.1 HMG (high mobility group) box protein [Arabidopsis thaliana]	475	404	276	230
AT4G24350	transcription only	1.4802879906093849	-0.8048467485565796	AT4G24350	--	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0009116,nucleoside metabolic process; GO:0009611,response to wounding;	--	NP_194166.2 Phosphorylase superfamily protein [Arabidopsis thaliana]	26	18	1	14
AT4G24370	transcription only	-1.9913002592945384	-0.2455060848147601	AT4G24370	--	GO:0005515,protein binding;	--	NP_567700.1 hypothetical protein AT4G24370 [Arabidopsis thaliana]	58	41	37	19
AT4G24380	transcription only	-1.0907911411139728	-0.7971561893310635	AT4G24380	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_567701.1 dihydrofolate reductase [Arabidopsis thaliana]	446	398	200	125
AT4G26230	transcription only	1.5522745024353823	0.590160211335932	AT4G26230	--	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L31e, RPL31; large subunit ribosomal protein L31e; K02910;	NP_194353.1 Ribosomal protein L31e family protein [Arabidopsis thaliana]	268	227	295	201
AT4G26240	transcription only	1.2425405956820397	0.1575237958834601	AT4G26240	--	GO:0016020,membrane;	--	NP_567740.1 histone-lysine N-methyltransferase [Arabidopsis thaliana]	83	54	50	49
AT4G26300	transcription only	2.08285556983532	0.5149884934914053	AT4G26300	--	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004814,arginine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006420,arginyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0016874,ligase activity; GO:0048608,reproductive structure development;	RARS, argS; arginyl-tRNA synthetase [EC:6.1.1.19]; K01887;	NP_194360.1 Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]	424	301	343	330
AT4G26600	transcription only	-1.4329550920894767	0.9214110961200696	AT4G26600	--	GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; GO:0070475,rRNA base methylation;	--	NP_001328282.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	84	79	122	84
AT4G26790	transcription only	-1.0294748868454515	0.09627041242762968	AT4G26790	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_567758.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	70	101	70	53
AT4G27950	transcription only	-1.330053078025928	0.1466383534716307	AT4G27950	ERF	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development;	--	NP_194524.2 cytokinin response factor 4 [Arabidopsis thaliana]	50	24	34	20
AT4G28160	transcription only	-1.2598874875448938	0.4638473818356169	AT4G28160	--	--	--	NP_194545.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	10	3	9	3
AT4G29380	transcription only	1.3516106172118891	0.6091352511719477	AT4G29380	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005770,late endosome; GO:0005794,Golgi apparatus; GO:0005942,phosphatidylinositol 3-kinase complex; GO:0006468,protein phosphorylation; GO:0006623,protein targeting to vacuole; GO:0006914,autophagy; GO:0009555,pollen development; GO:0009846,pollen germination; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016236,macroautophagy; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030242,autophagy of peroxisome; GO:0032991,protein-containing complex; GO:0034271,phosphatidylinositol 3-kinase complex, class III, type I; GO:0034272,phosphatidylinositol 3-kinase complex, class III, type II; GO:0045324,late endosome to vacuole transport; GO:0048015,phosphatidylinositol-mediated signaling; GO:0071561,nucleus-vacuole junction; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:0106310,protein serine kinase activity;	PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]; K08333;	NP_194667.1 protein kinase family protein / WD-40 repeat family protein [Arabidopsis thaliana]	115	156	155	122
AT4G29880	transcription only	-1.7507797230447009	0.5356946560828991	AT4G29880	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_194717.2 plant intracellular ras group-related LRR 7 [Arabidopsis thaliana]	11	9	10	9
AT4G30480	transcription only	1.139210204115502	0.4001637081943027	AT4G30480	--	GO:0005515,protein binding; GO:0051879,Hsp90 protein binding;	--	NP_001031756.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	76	54	54	57
AT4G31700	transcription only	1.874778431056474	0.6632416439339737	AT4G31700	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S6e, RPS6; small subunit ribosomal protein S6e; K02991;	NP_194898.1 ribosomal protein S6 [Arabidopsis thaliana]	1698	1324	1782	1374
AT4G32450	transcription only	1.0941833994094123	-0.5235779432855547	AT4G32450	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle;	--	NP_194971.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	14	6	5	4
AT4G33620	transcription only	-1.4370861959599308	0.43111545483448127	AT4G33620	--	GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0070139,SUMO-specific endopeptidase activity;	--	NP_001320126.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	24	15	17	17
AT4G34138	transcription only	1.7592151971797183	0.30484517125604954	AT4G34138	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567955.1 UDP-glucosyl transferase 73B1 [Arabidopsis thaliana]	54	40	46	31
AT4G34670	transcription only	1.8209288783346311	-0.04895618140453176	AT4G34670	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae; K02984;	NP_195193.1 Ribosomal protein S3Ae [Arabidopsis thaliana]	2426	2334	1723	1332
AT4G36140	transcription only	1.4122335873725314	0.8043083337878444	AT4G36140	--	GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043130,ubiquitin binding; GO:0043531,ADP binding;	--	NP_195337.1 disease resistance protein (TIR-NBS-LRR class) [Arabidopsis thaliana]	16	23	22	23
AT4G36380	transcription only	1.5068258424443246	0.1429589949734505	AT4G36380	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0009965,leaf morphogenesis; GO:0010268,brassinosteroid homeostasis; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042814,monopolar cell growth; GO:0046872,metal ion binding; GO:0048366,leaf development; GO:0048441,petal development; GO:0048443,stamen development; GO:0102097,(22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity; GO:0102136,3-epi-6-deoxocathasterone C-23 hydroxylase activity;	CYP90C1, ROT3; 3-epi-6-deoxocathasterone 23-monooxygenase [EC:1.14.14.147]; K12637;	NP_568002.1 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	72	90	99	27
AT4G36400	transcription only	1.0410077062363312	-0.02271536702807976	AT4G36400	--	GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0009853,photorespiration; GO:0010230,alternative respiration; GO:0016491,oxidoreductase activity; GO:0047545,2-hydroxyglutarate dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0051990,(R)-2-hydroxyglutarate dehydrogenase activity; GO:0071949,FAD binding;	D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39]; K18204;	NP_001320151.1 FAD-linked oxidases family protein [Arabidopsis thaliana]	171	160	116	99
AT4G36960	transcription only	1.0698982814446223	-0.14254388770242013	AT4G36960	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:1990904,ribonucleoprotein complex;	MSI; RNA-binding protein Musashi; K14411;	NP_001154290.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	69	88	47	47
AT4G37200	transcription only	1.3231866597594089	0.01080360904530801	AT4G37200	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0031977,thylakoid lumen;	--	NP_195437.1 Thioredoxin superfamily protein [Arabidopsis thaliana]	74	81	69	37
AT4G37260	transcription only	-1.6646085762117535	0.1957258386200313	AT4G37260	MYB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0019760,glucosinolate metabolic process; GO:1901001,negative regulation of response to salt stress;	--	NP_195443.1 myb domain protein 73 [Arabidopsis thaliana]	223	230	194	151
AT4G37330	transcription only	-1.2472572463130496	-0.2764313701684432	AT4G37330	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_195450.1 cytochrome P450, family 81, subfamily D, polypeptide 4 [Arabidopsis thaliana]	76	76	34	47
AT4G37670	transcription only	1.967136001237051	-0.09736613526009254	AT4G37670	--	GO:0004042,acetyl-CoA:L-glutamate N-acetyltransferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006526,arginine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0103045,methione N-acyltransferase activity;	argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]; K14682;	NP_974701.1 N-acetyl-l-glutamate synthase 2 [Arabidopsis thaliana]	24	21	22	7
AT4G37870	transcription only	-1.26734160060158	-0.3345873332734464	AT4G37870	--	GO:0000166,nucleotide binding; GO:0004611,phosphoenolpyruvate carboxykinase activity; GO:0004612,phosphoenolpyruvate carboxykinase (ATP) activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0016036,cellular response to phosphate starvation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0017076,purine nucleotide binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus;	E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]; K01610;	NP_195500.1 phosphoenolpyruvate carboxykinase 1 [Arabidopsis thaliana]	863	720	444	381
AT4G37930	transcription only	-1.236388503150952	-0.999651452475716	AT4G37930	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004372,glycine hydroxymethyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006544,glycine metabolic process; GO:0006563,L-serine metabolic process; GO:0006565,L-serine catabolic process; GO:0006730,one-carbon metabolic process; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009626,plant-type hypersensitive response; GO:0009853,photorespiration; GO:0010319,stromule; GO:0016740,transferase activity; GO:0019264,glycine biosynthetic process from serine; GO:0022626,cytosolic ribosome; GO:0030170,pyridoxal phosphate binding; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046655,folic acid metabolic process; GO:0048046,apoplast; GO:0070905,serine binding;	glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1]; K00600;	NP_195506.1 serine transhydroxymethyltransferase 1 [Arabidopsis thaliana]	2791	2586	989	791
AT4G38440	transcription only	-1.7138437066627483	0.1368503508760161	AT4G38440	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0030154,cell differentiation;	--	NP_195557.2 RPAP1-like, carboxy-terminal protein [Arabidopsis thaliana]	130	117	123	61
AT4G38770	transcription only	-1.2609613517899303	0.07541518754409543	AT4G38770	--	GO:0005576,extracellular region;	--	NP_195588.1 proline-rich protein 4 [Arabidopsis thaliana]	2250	2171	1797	1307
AT4G39200	transcription only	1.1443114307098268	0.27140857719525197	AT4G39200	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-S25e, RPS25; small subunit ribosomal protein S25e; K02975;	NP_195631.1 Ribosomal protein S25 family protein [Arabidopsis thaliana]	216	260	206	176
AT4G39960	transcription only	-1.4910599645327678	0.02149957467188096	AT4G39960	--	GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009941,chloroplast envelope; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_001329618.1 Molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana]	201	234	126	161
AT5G01180	transcription only	1.7733531080766805	-0.470007211249975	AT5G01180	--	GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035442,dipeptide transmembrane transport; GO:0042937,tripeptide transmembrane transporter activity; GO:0042938,dipeptide transport; GO:0042939,tripeptide transport; GO:0055085,transmembrane transport; GO:0071916,dipeptide transmembrane transporter activity;	--	NP_001331271.1 peptide transporter 5 [Arabidopsis thaliana]	70	77	25	43
AT5G02500	transcription only	-1.288091691335166	0.04669905295571873	AT5G02500	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0006952,defense response; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0010187,negative regulation of seed germination; GO:0010286,heat acclimation; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0042742,defense response to bacterium; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0090332,stomatal closure; GO:0098542,defense response to other organism; GO:0140662,ATP-dependent protein folding chaperone;	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283;	NP_195870.1 heat shock cognate protein 70-1 [Arabidopsis thaliana]	11030	9043	7633	6039
AT5G02770	transcription only	-1.0589587450732796	-0.4338537198418711	AT5G02770	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0051028,mRNA transport;	--	NP_195897.1 Protein MODIFIER OF SNC1 11 [Arabidopsis thaliana]	141	149	81	62
AT5G02820	transcription only	-2.317505855192873	0.05718829786389882	AT5G02820	--	GO:0000166,nucleotide binding; GO:0000228,nuclear chromosome; GO:0000287,magnesium ion binding; GO:0000706,meiotic DNA double-strand break processing; GO:0003677,DNA binding; GO:0003824,catalytic activity; GO:0003916,DNA topoisomerase activity; GO:0003918,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006259,DNA metabolic process; GO:0006265,DNA topological change; GO:0007131,reciprocal meiotic recombination; GO:0009330,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex; GO:0009957,epidermal cell fate specification; GO:0016853,isomerase activity; GO:0042138,meiotic DNA double-strand break formation; GO:0042802,identical protein binding; GO:0046872,metal ion binding;	SPO11; meiotic recombination protein SPO11; K10878;	NP_195902.1 Spo11/DNA topoisomerase VI, subunit A protein [Arabidopsis thaliana]	55	39	40	25
AT5G02890	transcription only	-1.2112622248514862	-0.18409326279513535	AT5G02890	--	GO:0005575,cellular_component; GO:0010025,wax biosynthetic process; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0042759,long-chain fatty acid biosynthetic process;	--	NP_195909.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	90	57	49	36
AT5G03140	transcription only	-2.0170760641188505	-0.7676156471130487	AT5G03140	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195934.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana]	20	31	16	5
AT5G03200	transcription only	-1.2124490493880569	-0.2550363705490886	AT5G03200	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_195940.1 RING/U-box superfamily protein [Arabidopsis thaliana]	47	46	25	26
AT5G03240	transcription only	-1.6608113017035029	-0.21791068658720508	AT5G03240	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010224,response to UV-B; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	NP_001031824.1 polyubiquitin 3 [Arabidopsis thaliana]	1923	1937	1230	974
AT5G03620	transcription only	-1.5073074827262336	-0.6798189520659158	AT5G03620	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_001331443.1 Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	88	65	25	36
AT5G04770	transcription only	1.7733721755600973	-0.5791738749717403	AT5G04770	--	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0015171,amino acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport;	--	NP_196097.1 cationic amino acid transporter 6 [Arabidopsis thaliana]	101	75	35	41
AT5G04930	transcription only	1.0710606040074184	-0.6447760993477739	AT5G04930	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity;	--	NP_568146.1 aminophospholipid ATPase 1 [Arabidopsis thaliana]	162	142	80	50
AT5G05460	transcription only	-2.0005798088215143	0.2839462715256748	AT5G05460	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006491,N-glycan processing; GO:0006517,protein deglycosylation; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033925,mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity;	ENGASE; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]; K01227;	NP_196165.3 Glycosyl hydrolase family 85 [Arabidopsis thaliana]	4	12	11	3
AT5G05860	transcription only	1.8452014914061192	0.8024725743430096	AT5G05860	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009690,cytokinin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042631,cellular response to water deprivation; GO:0047807,cytokinin 7-beta-glucosyltransferase activity; GO:0048316,seed development; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080062,cytokinin 9-beta-glucosyltransferase activity; GO:1900000,regulation of anthocyanin catabolic process; GO:1901527,abscisic acid-activated signaling pathway involved in stomatal movement;	UGT76C1_2; cytokinin-N-glucosyltransferase [EC:2.4.1.-]; K13493;	NP_196205.1 UDP-glucosyl transferase 76C2 [Arabidopsis thaliana]	9	3	5	8
AT5G06260	transcription only	1.2966811477547082	0.01951365058479107	AT5G06260	--	GO:0005509,calcium ion binding;	--	NP_001330374.1 TLD-domain containing nucleolar protein [Arabidopsis thaliana]	59	46	44	27
AT5G06310	transcription only	2.3334478510480627	0.22467436269364072	AT5G06310	--	GO:0000723,telomere maintenance; GO:0000781,chromosome, telomeric region; GO:0000783,nuclear telomere cap complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0010521,telomerase inhibitor activity; GO:0016233,telomere capping; GO:0032210,regulation of telomere maintenance via telomerase; GO:0043047,single-stranded telomeric DNA binding; GO:0051974,negative regulation of telomerase activity; GO:0098505,G-rich strand telomeric DNA binding;	--	NP_196249.2 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	16	14	12	11
AT5G06940	transcription only	-1.822823697543706	0.0655290786443837	AT5G06940	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_196311.1 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	39	42	24	31
AT5G08670	transcription only	1.256419775285335	0.2407921623420168	AT5G08670	--	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0005524,ATP binding; GO:0006754,ATP biosynthetic process; GO:0015986,proton motive force-driven ATP synthesis; GO:0016887,ATP hydrolysis activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046034,ATP metabolic process; GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2]; K02133;	NP_568203.2 ATP synthase alpha/beta family protein [Arabidopsis thaliana]	2043	1881	1613	1436
AT5G09730	transcription only	1.3721453197023394	-0.05371985807154328	AT5G09730	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity;	XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K15920;	NP_196535.1 beta-xylosidase 3 [Arabidopsis thaliana]	1763	1421	1183	850
AT5G09760	transcription only	-1.9487183217044188	0.1089724468873116	AT5G09760	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	--	NP_001331158.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	252	232	211	138
AT5G10790	transcription only	-2.48855807875764	0.4115598064653123	AT5G10790	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006508,proteolysis; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0008270,zinc ion binding; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0070461,SAGA-type complex;	--	NP_001332186.1 ubiquitin-specific protease 22 [Arabidopsis thaliana]	15	42	35	18
AT5G10830	transcription only	-1.1582632414103722	-0.05509015917422558	AT5G10830	--	GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_196644.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	34	14	12	17
AT5G13050	transcription only	1.1853498867594832	0.04312301896789286	AT5G13050	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006952,defense response; GO:0009396,folic acid-containing compound biosynthetic process; GO:0016874,ligase activity; GO:0030272,5-formyltetrahydrofolate cyclo-ligase activity; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046872,metal ion binding;	MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]; K01934;	NP_568284.1 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana]	94	116	62	79
AT5G13090	transcription only	3.0624646778070757	0.942222373014908	AT5G13090	--	--	--	KAG7602071.1 hypothetical protein ISN45_At05g011820 [Arabidopsis thaliana x Arabidopsis arenosa]	33	40	44	48
AT5G13310	transcription only	-2.181858471843021	0.3762565013165146	AT5G13310	--	GO:0003674,molecular_function;	--	NP_001331631.1 hypothetical protein AT5G13310 [Arabidopsis thaliana]	42	35	37	29
AT5G13770	transcription only	1.2800314062839562	0.10396902536576896	AT5G13770	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization;	--	NP_196881.2 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	50	29	34	22
AT5G14740	transcription only	1.2024276864890842	-0.09033639317391068	AT5G14740	--	GO:0004089,carbonate dehydratase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015976,carbon utilization; GO:0016829,lyase activity; GO:0048046,apoplast;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_001031883.1 carbonic anhydrase 2 [Arabidopsis thaliana]	117	120	62	82
AT5G16710	transcription only	-1.874443171735226	-0.3369484591536383	AT5G16710	--	GO:0004364,glutathione transferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009941,chloroplast envelope; GO:0010731,protein glutathionylation; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019852,L-ascorbic acid metabolic process; GO:0033355,ascorbate glutathione cycle; GO:0045174,glutathione dehydrogenase (ascorbate) activity; GO:0098869,cellular oxidant detoxification; GO:0140547,acquisition of seed longevity;	DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18]; K21888;	NP_568336.1 dehydroascorbate reductase 1 [Arabidopsis thaliana]	78	108	51	47
AT5G16930	transcription only	-1.7563854523379705	0.7333572061185829	AT5G16930	--	GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0016887,ATP hydrolysis activity;	--	NP_197195.2 AAA-type ATPase family protein [Arabidopsis thaliana]	68	65	79	67
AT5G16940	transcription only	1.582621741666993	-0.533045108414715	AT5G16940	--	GO:0008150,biological_process; GO:0016829,lyase activity; GO:0016846,carbon-sulfur lyase activity; GO:0046872,metal ion binding;	--	NP_001154714.1 carbon-sulfur lyase [Arabidopsis thaliana]	10	13	8	3
AT5G18140	transcription only	1.3029200295247727	0.4589258751071794	AT5G18140	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042026,protein refolding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_197315.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	17	4	8	10
AT5G18170	transcription only	1.292591378192469	-0.45705515487258663	AT5G18170	--	GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009536,plastid; GO:0009646,response to absence of light; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0050897,cobalt ion binding;	GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261;	NP_197318.1 glutamate dehydrogenase 1 [Arabidopsis thaliana]	137	107	76	43
AT5G18780	transcription only	1.658129956003338	-0.09294108910021932	AT5G18780	--	GO:0005515,protein binding;	--	NP_001190332.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]	30	13	14	12
AT5G19510	transcription only	-1.3738940023992023	0.29597116569460263	AT5G19510	--	GO:0003746,translation elongation factor activity; GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005853,eukaryotic translation elongation factor 1 complex; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity;	--	NP_568375.2 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	1171	1140	1081	807
AT5G19780	transcription only	3.312602016750565	0.09324047904953252	AT5G19780	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0005200,structural constituent of cytoskeleton; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	TUBA; tubulin alpha; K07374;	NP_197478.1 tubulin alpha-3 [Arabidopsis thaliana]	826	836	650	526
AT5G20130	transcription only	-1.1558313501119588	-0.4260182516017258	AT5G20130	--	GO:0003674,molecular_function; GO:0016779,nucleotidyltransferase activity;	--	NP_001332651.1 sulfate adenylyltransferase subunit [Arabidopsis thaliana]	33	55	13	29
AT5G22250	transcription only	1.4436332121736932	0.6085265790152504	AT5G22250	--	GO:0000289,nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0008408,3'-5' exonuclease activity; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0042742,defense response to bacterium; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_197617.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	11	14	17	9
AT5G22650	transcription only	2.2119110986331725	0.19758204154858736	AT5G22650	--	GO:0000325,plant-type vacuole; GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0048364,root development;	--	NP_851056.1 histone deacetylase 2B [Arabidopsis thaliana]	1079	962	849	696
AT5G23590	transcription only	1.293660067087116	0.09828448383403324	AT5G23590	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding;	--	NP_001031930.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	63	50	46	34
AT5G23700	transcription only	1.3004313103308254	-0.04961301690124899	AT5G23700	--	GO:0000911,cytokinesis by cell plate formation; GO:0003674,molecular_function;	--	NP_001330555.1 coiled-coil protein [Arabidopsis thaliana]	9	11	13	1
AT5G24830	transcription only	1.781398987348732	-0.42696534638191613	AT5G24830	--	GO:0005515,protein binding;	--	NP_568460.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	36	13	16	8
AT5G27290	transcription only	-1.2790355713496142	0.24974884153947305	AT5G27290	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_568492.1 stress regulated protein [Arabidopsis thaliana]	23	16	20	11
AT5G28300	transcription only	-1.022491512617095	-0.42775002539881296	AT5G28300	Trihelix	GO:0000987,cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	BAE99307.1 GTL1 - like protein [Arabidopsis thaliana]	98	93	63	33
AT5G28500	transcription only	-1.491055832568387	-0.8783676103992227	AT5G28500	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_198202.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]	344	299	128	103
AT5G35360	transcription only	1.855884807096034	0.05334810763798823	AT5G35360	--	GO:0000166,nucleotide binding; GO:0003989,acetyl-CoA carboxylase activity; GO:0004075,biotin carboxylase activity; GO:0005524,ATP binding; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0046872,metal ion binding; GO:2001295,malonyl-CoA biosynthetic process;	accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]; K01961;	NP_198386.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit [Arabidopsis thaliana]	1668	1583	1279	963
AT5G37500	transcription only	4.462531969625386	0.2092214430400799	AT5G37500	--	GO:0005216,ion channel activity; GO:0005244,voltage-gated ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005267,potassium channel activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009753,response to jasmonic acid; GO:0015075,ion transmembrane transporter activity; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0034765,regulation of ion transmembrane transport; GO:0051592,response to calcium ion; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport;	--	NP_001332118.1 gated outwardly-rectifying K+ channel [Arabidopsis thaliana]	67	59	68	31
AT5G38410	transcription only	-1.123277229447171	-0.5734953776178292	AT5G38410	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016984,ribulose-bisphosphate carboxylase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019904,protein domain specific binding; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]; K01602;	NP_001119331.1 Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]	1732	1687	964	583
AT5G40440	transcription only	-1.7358267572331083	-7.457296737540168e-4	AT5G40440	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0004708,MAP kinase kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009864,induced systemic resistance, jasmonic acid mediated signaling pathway; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0080027,response to herbivore; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2]; K20607;	NP_001332250.1 mitogen-activated protein kinase kinase 3 [Arabidopsis thaliana]	163	127	86	101
AT5G40450	transcription only	-1.521658711645942	0.354622806749518	AT5G40450	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0080171,lytic vacuole organization;	--	NP_001330812.1 A-kinase anchor-like protein [Arabidopsis thaliana]	722	609	619	503
AT5G43130	transcription only	-1.5046042296824471	0.5265312331718054	AT5G43130	--	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0006367,transcription initiation at RNA polymerase II promoter; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0046982,protein heterodimerization activity;	TAF4; transcription initiation factor TFIID subunit 4; K03129;	NP_199127.3 TBP-associated factor 4 [Arabidopsis thaliana]	114	88	109	83
AT5G44040	transcription only	-1.491055832568387	0.06089866785297286	AT5G44040	--	GO:0007142,male meiosis II;	--	NP_199217.1 eisosome SEG2-like protein [Arabidopsis thaliana]	52	40	45	20
AT5G44130	transcription only	-1.9313124806854205	-0.33997156232597847	AT5G44130	--	GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane;	--	NP_199226.1 FASCICLIN-like arabinogalactan protein 13 precursor [Arabidopsis thaliana]	55	47	34	20
AT5G44180	transcription only	5.352927092299957	-0.05127003101195225	AT5G44180	HB-other	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0031010,ISWI-type complex; GO:0043229,intracellular organelle; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001318738.1 Homeodomain-like transcriptional regulator [Arabidopsis thaliana]	161	134	100	87
AT5G44785	transcription only	1.1461418604682	0.43694453596324495	AT5G44785	--	GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005739,mitochondrion; GO:0006260,DNA replication; GO:0006264,mitochondrial DNA replication; GO:0009295,nucleoid; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042645,mitochondrial nucleoid; GO:0051096,positive regulation of helicase activity;	--	NP_568639.1 organellar single-stranded DNA binding protein 3 [Arabidopsis thaliana]	114	75	65	97
AT5G46280	transcription only	-3.3413666902790977	-0.3724856766828392	AT5G46280	--	GO:0000166,nucleotide binding; GO:0000347,THO complex; GO:0000727,double-strand break repair via break-induced replication; GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003697,single-stranded DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006270,DNA replication initiation; GO:0006271,DNA strand elongation involved in DNA replication; GO:0007049,cell cycle; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0042555,MCM complex; GO:1902975,mitotic DNA replication initiation;	MCM3; DNA replication licensing factor MCM3 [EC:3.6.4.12]; K02541;	NP_199440.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	342	297	223	111
AT5G46700	transcription only	2.7355747094191307	-0.3667788235622996	AT5G46700	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009554,megasporogenesis; GO:0009734,auxin-activated signaling pathway; GO:0009933,meristem structural organization; GO:0009934,regulation of meristem structural organization; GO:0009956,radial pattern formation; GO:0010015,root morphogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_199482.1 Tetraspanin family protein [Arabidopsis thaliana]	154	174	81	86
AT5G47580	transcription only	-1.3773801249621582	-0.10810863444044708	AT5G47580	--	GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_199569.1 transmembrane protein [Arabidopsis thaliana]	15	18	9	11
AT5G47970	transcription only	2.0437068161976977	0.6514507052710974	AT5G47970	--	GO:0002943,tRNA dihydrouridine synthesis; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008033,tRNA processing; GO:0009524,phragmoplast; GO:0016491,oxidoreductase activity; GO:0017150,tRNA dihydrouridine synthase activity; GO:0050660,flavin adenine dinucleotide binding;	--	NP_001078731.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	70	87	83	80
AT5G49100	transcription only	-1.6570888540530453	0.18040985112439545	AT5G49100	--	--	--	NP_568706.1 vitellogenin-like protein [Arabidopsis thaliana]	130	97	88	80
AT5G49660	transcription only	-1.0123759295780277	-0.12354634268930256	AT5G49660	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010051,xylem and phloem pattern formation; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0017046,peptide hormone binding; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0042277,peptide binding; GO:0048437,floral organ development; GO:0048831,regulation of shoot system development; GO:0051428,peptide hormone receptor binding; GO:0080113,regulation of seed growth; GO:0090548,response to nitrate starvation; GO:1901141,regulation of lignin biosynthetic process; GO:1901333,positive regulation of lateral root development; GO:1902025,nitrate import; GO:2000023,regulation of lateral root development; GO:2000280,regulation of root development; GO:2000652,regulation of secondary cell wall biogenesis;	--	NP_199777.1 Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	128	129	84	72
AT5G49700	transcription only	1.175074148358365	-0.3147885320210269	AT5G49700	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_199781.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	34	51	26	20
AT5G51180	transcription only	3.856497802354824	-0.16106172907547203	AT5G51180	--	GO:0003674,molecular_function; GO:0044255,cellular lipid metabolic process;	--	NP_568754.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	60	110	53	49
AT5G51550	transcription only	1.2544441606814307	-0.5490006062696601	AT5G51550	--	GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0048046,apoplast;	--	NP_199968.1 EXORDIUM like 3 [Arabidopsis thaliana]	542	452	259	191
AT5G51950	transcription only	1.1839687582136302	-0.7041286926579061	AT5G51950	--	GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding;	--	NP_200008.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]	1055	852	459	318
AT5G53050	transcription only	-1.873310658140759	-0.31864780734745396	AT5G53050	--	GO:0003824,catalytic activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_001032065.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	55	52	27	29
AT5G53880	transcription only	-1.7689019358435691	0.05590269378845419	AT5G53880	--	GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_568802.1 hypothetical protein AT5G53880 [Arabidopsis thaliana]	106	69	71	49
AT5G54570	transcription only	-1.0889061575224777	-0.5001646901885413	AT5G54570	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102483,scopolin beta-glucosidase activity;	E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188;	NP_200268.3 beta glucosidase 41 [Arabidopsis thaliana]	25	24	13	10
AT5G54630	transcription only	-1.3787113489023304	-0.13508563572376636	AT5G54630	--	GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_200274.1 zinc finger protein-like protein [Arabidopsis thaliana]	56	44	39	22
AT5G54770	transcription only	-2.2141080796729975	-0.7458861187649481	AT5G54770	--	GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006974,cellular response to DNA damage stimulus; GO:0008270,zinc ion binding; GO:0009228,thiamine biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016763,pentosyltransferase activity; GO:0018131,oxazole or thiazole biosynthetic process; GO:0019438,aromatic compound biosynthetic process; GO:0019904,protein domain specific binding; GO:0042803,protein homodimerization activity; GO:0044272,sulfur compound biosynthetic process; GO:0046872,metal ion binding; GO:0052837,thiazole biosynthetic process; GO:1901362,organic cyclic compound biosynthetic process; GO:1901566,organonitrogen compound biosynthetic process;	THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]; K03146;	NP_200288.1 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) [Arabidopsis thaliana]	12932	12365	5800	4248
AT5G55450	transcription only	-1.8616953149055888	-0.4798208812059597	AT5G55450	--	GO:0005504,fatty acid binding; GO:0009627,systemic acquired resistance; GO:0051707,response to other organism;	--	NP_568824.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	15	15	12	3
AT5G56120	transcription only	1.2188423849583456	-0.9764958909868096	AT5G56120	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_200423.2 RNA polymerase II elongation factor [Arabidopsis thaliana]	86	78	24	30
AT5G56590	transcription only	1.7510806373945491	0.4650344489380174	AT5G56590	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_200470.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	69	58	66	50
AT5G56660	transcription only	1.768881714131554	0.2864690462964509	AT5G56660	--	GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0009850,auxin metabolic process; GO:0010178,IAA-amino acid conjugate hydrolase activity; GO:0010179,IAA-Ala conjugate hydrolase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_200477.1 IAA-leucine resistant (ILR)-like 2 [Arabidopsis thaliana]	12	29	29	7
AT5G56870	transcription only	1.3769248450544855	-0.30446919628972907	AT5G56870	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast;	--	NP_200498.1 beta-galactosidase 4 [Arabidopsis thaliana]	1139	1081	663	528
AT5G57250	transcription only	2.2441520197377427	-0.3072489435681446	AT5G57250	--	GO:0005515,protein binding; GO:0005739,mitochondrion;	--	BAA96948.1 salt-inducible protein-like [Arabidopsis thaliana]	23	23	10	14
AT5G58060	transcription only	1.2184150542373018	-0.5531220369955016	AT5G58060	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006906,vesicle fusion; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0031982,vesicle;	YKT6; synaptobrevin homolog YKT6; K08516;	NP_001154785.1 SNARE-like superfamily protein [Arabidopsis thaliana]	142	151	64	67
AT5G58240	transcription only	1.2544362186345253	0.49705875544673583	AT5G58240	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0043530,adenosine 5'-monophosphoramidase activity; GO:0047352,adenylylsulfate-ammonia adenylyltransferase activity; GO:0047627,adenylylsulfatase activity; GO:0047710,bis(5'-adenosyl)-triphosphatase activity;	FHIT; bis(5'-adenosyl)-triphosphatase [EC:3.6.1.29]; K01522;	NP_200632.2 FRAGILE HISTIDINE TRIAD [Arabidopsis thaliana]	44	35	49	26
AT5G58270	transcription only	-1.36946718688904	-0.01607502642763557	AT5G58270	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0006811,ion transport; GO:0006879,cellular iron ion homeostasis; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010288,response to lead ion; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0046686,response to cadmium ion; GO:0048364,root development; GO:0050790,regulation of catalytic activity; GO:0051276,chromosome organization; GO:0055072,iron ion homeostasis; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCB7; ATP-binding cassette, subfamily B (MDR/TAP), member 7; K05662;	NP_200635.1 ABC transporter of the mitochondrion 3 [Arabidopsis thaliana]	281	170	140	147
AT5G58300	transcription only	-1.1518038734663216	-0.3358346930450979	AT5G58300	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001119458.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	112	113	64	54
AT5G58640	transcription only	1.357173317969941	-0.17099148585872764	AT5G58640	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	SELENOT; thioredoxin reductase-like selenoprotein T; K22366;	NP_200672.1 Selenoprotein, Rdx type [Arabidopsis thaliana]	153	101	78	69
AT5G58650	transcription only	1.1870446669634886	0.4169809487830351	AT5G58650	--	GO:0005576,extracellular region; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0009658,chloroplast organization; GO:0042127,regulation of cell population proliferation;	--	NP_200673.1 plant peptide containing sulfated tyrosine 1 [Arabidopsis thaliana]	49	23	38	25
AT5G59010	transcription only	-1.172911258925274	-0.4666884468073416	AT5G59010	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_200709.2 kinase with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	234	186	132	72
AT5G60360	transcription only	-1.0401864824086158	-0.14689161030243214	AT5G60360	--	GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0007568,aging; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0099503,secretory vesicle;	CTSH; cathepsin H [EC:3.4.22.16]; K01366;	NP_568921.1 aleurain-like protease [Arabidopsis thaliana]	3719	3168	2324	1790
AT5G61260	transcription only	-2.0114077988920593	-0.37349556425161445	AT5G61260	--	GO:0005516,calmodulin binding; GO:0008150,biological_process;	--	NP_001318853.1 Plant calmodulin-binding protein-like protein [Arabidopsis thaliana]	29	19	12	12
AT5G61480	transcription only	-1.2521284658798886	0.19699916109614893	AT5G61480	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0010089,xylem development; GO:0010223,secondary shoot formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0051301,cell division; GO:0106310,protein serine kinase activity;	--	NP_200956.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	349	404	318	257
AT5G62680	transcription only	-1.5025108660447122	-0.554922030568508	AT5G62680	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090448,glucosinolate:proton symporter activity; GO:0090449,phloem glucosinolate loading; GO:0098656,anion transmembrane transport; GO:1901349,glucosinolate transport;	--	NP_201074.1 Major facilitator superfamily protein [Arabidopsis thaliana]	759	612	342	273
AT5G63780	transcription only	-1.1380552900635406	0.2398233749049005	AT5G63780	--	GO:0008270,zinc ion binding; GO:0010492,maintenance of shoot apical meristem identity; GO:0016020,membrane; GO:0048507,meristem development;	--	NP_001331890.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	128	94	89	82
AT5G63890	transcription only	2.7499429814133367	0.5015119013920845	AT5G63890	--	GO:0000105,histidine biosynthetic process; GO:0004399,histidinol dehydrogenase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009411,response to UV; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046872,metal ion binding; GO:0051287,NAD binding;	hisD; histidinol dehydrogenase [EC:1.1.1.23]; K00013;	NP_568981.2 histidinol dehydrogenase [Arabidopsis thaliana]	167	165	175	137
AT5G64000	transcription only	-1.756790503043215	-0.5043905682031897	AT5G64000	--	GO:0000103,sulfate assimilation; GO:0003824,catalytic activity; GO:0004441,inositol-1,4-bisphosphate 1-phosphatase activity; GO:0006790,sulfur compound metabolic process; GO:0008152,metabolic process; GO:0008441,3'(2'),5'-bisphosphate nucleotidase activity; GO:0016312,inositol bisphosphate phosphatase activity; GO:0016787,hydrolase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046872,metal ion binding;	SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57]; K15422;	NP_201205.1 Inositol monophosphatase family protein [Arabidopsis thaliana]	121	74	40	48
AT5G64030	transcription only	1.2584041291788983	-0.6166440737657519	AT5G64030	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_201208.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	910	769	425	302
AT5G64240	transcription only	-1.7851317190617038	-0.7368466436655867	AT5G64240	--	GO:0004197,cysteine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_851262.1 metacaspase 3 [Arabidopsis thaliana]	170	124	65	51
AT5G64620	transcription only	1.181754629840376	-0.40794508149615066	AT5G64620	--	GO:0004857,enzyme inhibitor activity; GO:0005773,vacuole; GO:0043086,negative regulation of catalytic activity;	--	NP_201267.1 cell wall / vacuolar inhibitor of fructosidase 2 [Arabidopsis thaliana]	280	151	100	108
AT5G64770	transcription only	-1.796221272108247	0.7606750170385498	AT5G64770	--	GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005783,endoplasmic reticulum; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0008284,positive regulation of cell population proliferation; GO:0009733,response to auxin; GO:0009786,regulation of asymmetric cell division; GO:0009958,positive gravitropism; GO:0010082,regulation of root meristem growth; GO:0022622,root system development; GO:0030154,cell differentiation; GO:0032880,regulation of protein localization; GO:0048527,lateral root development; GO:2000012,regulation of auxin polar transport; GO:2000023,regulation of lateral root development; GO:2000067,regulation of root morphogenesis; GO:2000280,regulation of root development;	--	NP_201282.1 root meristem growth factor [Arabidopsis thaliana]	10	7	11	8
AT5G64920	transcription only	-1.1857608088461975	0.9728124534299024	AT5G64920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_201297.1 COP1-interacting protein 8 [Arabidopsis thaliana]	38	38	40	56
AT5G65460	transcription only	-1.2812356033418424	0.4183328514119166	AT5G65460	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007017,microtubule-based process; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement; GO:0015630,microtubule cytoskeleton; GO:0016020,membrane; GO:0031022,nuclear migration along microfilament;	--	NP_001331384.1 kinesin like protein for actin based chloroplast movement 2 [Arabidopsis thaliana]	138	156	137	123
AT5G65990	transcription only	1.5793022824353815	-0.4153910319308858	AT5G65990	--	GO:0003333,amino acid transmembrane transport; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006865,amino acid transport; GO:0015173,aromatic amino acid transmembrane transporter activity; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015801,aromatic amino acid transport; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport;	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209;	NP_201400.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	162	175	93	75
AT5G67250	transcription only	-1.475142926668756	0.4856356086318493	AT5G67250	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_569047.1 SKP1/ASK1-interacting protein 2 [Arabidopsis thaliana]	112	122	106	109
AT5G67290	transcription only	-1.1591892404750797	-0.02310717964471544	AT5G67290	--	GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity;	--	NP_201530.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]	74	41	37	36
AT5G67310	transcription only	1.6675714458393625	0.13416434666636515	AT5G67310	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_201532.2 cytochrome P450, family 81, subfamily G, polypeptide 1 [Arabidopsis thaliana]	13	11	13	5
AT5G67360	transcription only	-1.08908435672817	-0.2121267938671768	AT5G67360	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0010214,seed coat development; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0048359,mucilage metabolic process involved in seed coat development; GO:0080001,mucilage extrusion from seed coat; GO:0099503,secretory vesicle;	--	NP_569048.1 Subtilase family protein [Arabidopsis thaliana]	3188	2919	1973	1522
AT5G67490	transcription only	-1.8977943875670205	0.04948154168365045	AT5G67490	--	GO:0005739,mitochondrion; GO:0006099,tricarboxylic acid cycle; GO:0034553,mitochondrial respiratory chain complex II assembly;	--	NP_569049.1 succinate dehydrogenase assembly factor [Arabidopsis thaliana]	686	603	447	426
AT1G01130	translation only	0.5629389009964095	-1.773887644855576	AT1G01130	--	--	--	NP_171621.2 CBL-interacting Serine/Threonine-kinase [Arabidopsis thaliana]	24	20	8	1
AT1G01750	translation only	-0.15034505049512462	-1.4314559162396254	AT1G01750	--	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0030042,actin filament depolymerization; GO:0051015,actin filament binding;	CFL; cofilin; K05765;	NP_171680.1 actin depolymerizing factor 11 [Arabidopsis thaliana]	6	13	4	1
AT1G03130	translation only	-0.0839046151033104	-1.0707848724352749	AT1G03130	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding;	psaD; photosystem I subunit II; K02692;	NP_171812.1 photosystem I subunit D-2 [Arabidopsis thaliana]	636	741	247	191
AT1G03870	translation only	-0.1603379651401728	-1.5734049638738212	AT1G03870	--	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0099503,secretory vesicle;	--	NP_563692.1 FASCICLIN-like arabinoogalactan 9 [Arabidopsis thaliana]	65	52	15	11
AT1G06260	translation only	-0.6500799469938042	-1.2930568913951457	AT1G06260	--	GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process;	--	NP_563764.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	468	511	154	113
AT1G06560	translation only	-0.3786394888486809	1.0112421501228082	AT1G06560	--	GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis;	--	NP_172143.3 NOL1/NOP2/sun family protein [Arabidopsis thaliana]	48	46	62	62
AT1G08590	translation only	-0.3618932347586372	-1.1886973779027736	AT1G08590	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0106310,protein serine kinase activity;	--	NP_172335.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	21	10	6	3
AT1G09340	translation only	-0.6316790751016567	-1.247884890178596	AT1G09340	--	GO:0000272,polysaccharide catabolic process; GO:0000325,plant-type vacuole; GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005975,carbohydrate metabolic process; GO:0005996,monosaccharide metabolic process; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010297,heteropolysaccharide binding; GO:0010319,stromule; GO:0010468,regulation of gene expression; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0042631,cellular response to water deprivation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast;	--	NP_001322308.1 chloroplast RNA binding protein [Arabidopsis thaliana]	691	648	211	163
AT1G10070	translation only	-0.00325403912410146	-1.131529463043501	AT1G10070	--	GO:0003824,catalytic activity; GO:0004084,branched-chain-amino-acid transaminase activity; GO:0005737,cytoplasm; GO:0008483,transaminase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009081,branched-chain amino acid metabolic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009097,isoleucine biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009099,valine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0050048,L-leucine:2-oxoglutarate aminotransferase activity; GO:0052654,L-leucine transaminase activity; GO:0052655,L-valine transaminase activity; GO:0052656,L-isoleucine transaminase activity; GO:0071669,plant-type cell wall organization or biogenesis;	E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42]; K00826;	NP_001031015.1 branched-chain amino acid transaminase 2 [Arabidopsis thaliana]	32	30	6	12
AT1G10395	translation only	0.3761439736174939	1.6048510665168054	AT1G10395	--	--	--	NP_001320683.1 hypothetical protein AT1G10395 [Arabidopsis thaliana]	25	20	44	45
AT1G13110	translation only	0.8008576739909383	2.780997169682863	AT1G13110	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172770.1 cytochrome P450, family 71 subfamily B, polypeptide 7 [Arabidopsis thaliana]	7	6	18	38
AT1G13140	translation only	-0.01799915338949222	-1.027720533575312	AT1G13140	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172773.4 cytochrome P450, family 86, subfamily C, polypeptide 3 [Arabidopsis thaliana]	251	235	77	79
AT1G14370	translation only	-0.04886574795260545	1.0748626988195067	AT1G14370	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030957,Tat protein binding; GO:0106310,protein serine kinase activity; GO:1900426,positive regulation of defense response to bacterium;	--	NP_172889.1 protein kinase 2A [Arabidopsis thaliana]	9	13	17	14
AT1G15040	translation only	-0.4182594497341805	-1.038166530998748	AT1G15040	--	GO:0005575,cellular_component; GO:0006541,glutamine metabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:2000032,regulation of secondary shoot formation;	--	NP_850943.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	204	203	76	56
AT1G15520	translation only	0.30912961697925195	-1.0776649648522754	AT1G15520	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010193,response to ozone; GO:0010496,intercellular transport; GO:0015562,efflux transmembrane transporter activity; GO:0015692,lead ion transport; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042631,cellular response to water deprivation; GO:0046865,terpenoid transport; GO:0048581,negative regulation of post-embryonic development; GO:0055085,transmembrane transport; GO:0080168,abscisic acid transport; GO:0090332,stomatal closure; GO:0098657,import into cell; GO:0098739,import across plasma membrane; GO:0140359,ABC-type transporter activity;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_173005.1 pleiotropic drug resistance 12 [Arabidopsis thaliana]	43	50	20	10
AT1G16000	translation only	0.8948389756041502	1.018997984939637	AT1G16000	--	GO:0009527,plastid outer membrane; GO:0016020,membrane;	--	VYS46232.1 unnamed protein product [Arabidopsis thaliana]	56	37	66	57
AT1G18710	translation only	0.6267125312313271	1.4489516923511412	AT1G18710	MYB	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0010214,seed coat development; GO:0140547,acquisition of seed longevity;	--	NP_173306.1 myb domain protein 47 [Arabidopsis thaliana]	5	4	8	8
AT1G21160	translation only	0.5788296037325851	3.899256629640041	AT1G21160	--	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process;	EIF5B; translation initiation factor 5B; K03243;	NP_173540.2 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]	37	16	296	222
AT1G22050	translation only	-0.4972289879491185	-1.55491409761166	AT1G22050	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_173624.1 membrane-anchored ubiquitin-fold protein 6 precursor [Arabidopsis thaliana]	15	12	3	3
AT1G23560	translation only	0.9615089161675388	-1.0310044502717222	AT1G23560	--	--	--	NP_001320352.1 OBP32pep, putative (DUF220) [Arabidopsis thaliana]	57	53	16	19
AT1G24030	translation only	-0.1737710318663599	-1.4256868003076033	AT1G24030	--	GO:0000166,nucleotide binding; GO:0000976,transcription cis-regulatory region binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173814.2 Protein kinase superfamily protein [Arabidopsis thaliana]	27	7	4	4
AT1G24290	translation only	0.1025152124322944	-1.381914529021525	AT1G24290	--	GO:0000731,DNA synthesis involved in DNA repair; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006261,DNA-templated DNA replication; GO:0008047,enzyme activator activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0050790,regulation of catalytic activity;	ycaJ; putative ATPase; K07478;	NP_173839.1 AAA-type ATPase family protein [Arabidopsis thaliana]	20	17	9	1
AT1G24600	translation only	-0.5919809935954766	-1.8507052843306813	AT1G24600	--	--	--	NP_564221.1 hypothetical protein AT1G24600 [Arabidopsis thaliana]	10	11	3	1
AT1G25550	translation only	0.4414648473348607	-1.642034343404085	AT1G25550	G2-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016036,cellular response to phosphate starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0071456,cellular response to hypoxia; GO:0080090,regulation of primary metabolic process;	--	NP_001323092.1 myb-like transcription factor family protein [Arabidopsis thaliana]	22	23	8	2
AT1G27640	translation only	0.01797336651658607	1.7231990994580315	AT1G27640	--	GO:0003674,molecular_function;	--	NP_174085.1 hypothetical protein AT1G27640 [Arabidopsis thaliana]	14	17	47	23
AT1G29200	translation only	0.906885208065432	-1.1383715050834866	AT1G29200	--	GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_001322313.1 O-fucosyltransferase family protein [Arabidopsis thaliana]	14	14	8	1
AT1G30800	translation only	0.3813308561970862	1.7330873344302642	AT1G30800	--	GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane;	--	NP_174366.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	6	4	8	13
AT1G32630	translation only	-0.5024255034557408	1.1815338492861769	AT1G32630	--	GO:0003674,molecular_function;	--	NP_001322452.1 FAM50A-like protein [Arabidopsis thaliana]	5	7	9	9
AT1G34110	translation only	-0.1436441521724023	1.2126748546266295	AT1G34110	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0010074,maintenance of meristem identity; GO:0010082,regulation of root meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_001320719.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	16	22	28	30
AT1G48100	translation only	0.5007613792421419	-1.32368180773485	AT1G48100	--	GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009831,plant-type cell wall modification involved in multidimensional cell growth; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0071555,cell wall organization;	--	NP_175244.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	218	182	68	39
AT1G50630	translation only	-0.01482675785933124	1.1112375882749932	AT1G50630	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_564578.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]	21	26	39	29
AT1G52618	translation only	0.36569041008217945	2.6510473808088073	AT1G52618	--	GO:0003674,molecular_function;	--	NP_001077705.1 hypothetical protein AT1G52618 [Arabidopsis thaliana]	4	1	10	10
AT1G56010	translation only	-0.11228910442568758	-1.040395770001864	AT1G56010	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009734,auxin-activated signaling pathway; GO:0048527,lateral root development;	--	NP_175997.1 NAC domain containing protein 1 [Arabidopsis thaliana]	40	21	9	10
AT1G65240	translation only	-0.8786716657395238	-1.0089969747889147	AT1G65240	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009860,pollen tube growth; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030163,protein catabolic process; GO:0090406,pollen tube;	--	NP_176703.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	50	55	15	19
AT1G68725	translation only	0.20955573580304748	-1.123152997613274	AT1G68725	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_177041.3 arabinogalactan protein 19 [Arabidopsis thaliana]	33	32	18	3
AT1G68870	translation only	-0.9028652658212366	-1.6541641295758642	AT1G68870	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009690,cytokinin metabolic process; GO:0009691,cytokinin biosynthetic process; GO:0009736,cytokinin-activated signaling pathway;	--	NP_177053.1 SOB five-like 2 [Arabidopsis thaliana]	24	19	5	4
AT1G71170	translation only	-0.4720479779982275	-1.0578643501664329	AT1G71170	--	GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding;	HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020;	NP_565013.2 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	286	230	83	79
AT1G72300	translation only	0.7177930252805482	-1.7152474417512802	AT1G72300	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004888,transmembrane signaling receptor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009826,unidimensional cell growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031347,regulation of defense response; GO:0042802,identical protein binding; GO:0045851,pH reduction; GO:0106310,protein serine kinase activity;	--	CAD5316993.1 unnamed protein product [Arabidopsis thaliana]	25	30	5	6
AT1G73880	translation only	0.4154610004102053	-1.055540327727133	AT1G73880	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_177529.2 UDP-glucosyl transferase 89B1 [Arabidopsis thaliana]	148	125	50	37
AT1G75300	translation only	-0.26900562925755633	-1.065082103681521	AT1G75300	--	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_177665.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	460	435	128	150
AT1G75960	translation only	-0.7874878605326131	-1.8573288506412335	AT1G75960	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_177724.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	48	85	15	10
AT1G76810	translation only	0.02317909899437118	-1.5621505676853098	AT1G76810	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation;	EIF5B; translation initiation factor 5B; K03243;	NP_177807.3 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]	269	337	69	67
AT1G77280	translation only	-0.4506314549875496	-1.5963359834549398	AT1G77280	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity;	--	NP_001319394.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana]	51	47	9	12
AT1G78980	translation only	-0.5274744172754527	-1.1012792731345455	AT1G78980	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_178019.2 STRUBBELIG-receptor family 5 [Arabidopsis thaliana]	5	15	7	0
AT1G80320	translation only	-0.07237444342377339	-2.312631422505069	AT1G80320	--	GO:0051213,dioxygenase activity;	--	NP_178148.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	35	14	1	5
AT1G80840	translation only	-0.3756412411165262	-1.7306379621952448	AT1G80840	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009611,response to wounding; GO:0009751,response to salicylic acid; GO:0031347,regulation of defense response; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0050832,defense response to fungus;	--	NP_178199.1 WRKY DNA-binding protein 40 [Arabidopsis thaliana]	18	10	0	5
AT2G01860	translation only	-0.6103581367004604	1.140279733374839	AT2G01860	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_178295.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	12	10	23	10
AT2G02500	translation only	-0.08307641380335153	-1.597519370639502	AT2G02500	--	GO:0003824,catalytic activity; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0050518,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; GO:0070567,cytidylyltransferase activity;	ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]; K00991;	NP_001325418.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	66	49	14	11
AT2G04030	translation only	0.518142621150611	1.0282486001367468	AT2G04030	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009704,de-etiolation; GO:0009941,chloroplast envelope; GO:0010157,response to chlorate; GO:0015031,protein transport; GO:0016887,ATP hydrolysis activity; GO:0042803,protein homodimerization activity; GO:0045037,protein import into chloroplast stroma; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone;	HSP90B, TRA1; heat shock protein 90kDa beta; K09487;	NP_178487.1 Chaperone protein htpG family protein [Arabidopsis thaliana]	1797	1654	2745	1945
AT2G04380	translation only	0.3222749859436793	1.9074457464490595	AT2G04380	--	GO:0008150,biological_process;	--	NP_178519.1 hypothetical protein AT2G04380 [Arabidopsis thaliana]	73	44	184	108
AT2G16910	translation only	0.4298436583919804	-1.056689735698413	AT2G16910	bHLH	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0043565,sequence-specific DNA binding; GO:0046983,protein dimerization activity; GO:0048658,anther wall tapetum development;	--	NP_179283.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	488	462	165	137
AT2G19330	translation only	0.02750315853359619	1.0446694593785917	AT2G19330	--	GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_179523.1 plant intracellular ras group-related LRR 6 [Arabidopsis thaliana]	6	4	10	4
AT2G21180	translation only	0.3557709180073429	-1.053649918871714	AT2G21180	--	GO:0016020,membrane;	--	NP_565499.1 transmembrane protein [Arabidopsis thaliana]	96	70	26	26
AT2G23670	translation only	-0.5465711153258874	-1.0008881909684266	AT2G23670	--	GO:0003674,molecular_function; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid;	--	NP_565556.1 homolog of Synechocystis YCF37 [Arabidopsis thaliana]	262	253	103	69
AT2G24230	translation only	-0.9934645228236468	-1.085684319319103	AT2G24230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_850049.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	117	87	34	29
AT2G24970	translation only	-0.08131786765008246	1.09518131810082	AT2G24970	--	GO:0000278,mitotic cell cycle; GO:0000940,outer kinetochore; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005876,spindle microtubule; GO:0007059,chromosome segregation; GO:0008017,microtubule binding; GO:0051301,cell division;	--	NP_565581.1 spindle/kinetochore-associated protein [Arabidopsis thaliana]	5	5	7	7
AT2G25280	translation only	0.692749075882493	-1.0650387188014143	AT2G25280	--	--	--	NP_565590.1 AmmeMemoRadiSam system protein B [Arabidopsis thaliana]	187	145	78	30
AT2G27330	translation only	-0.2091753941933214	1.336613450228374	AT2G27330	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0008150,biological_process;	--	NP_565646.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	10	2	9	10
AT2G28440	translation only	-0.05928355087066585	-1.1591557925718678	AT2G28440	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_180411.1 proline-rich family protein [Arabidopsis thaliana]	16	8	4	3
AT2G29540	translation only	-0.36233340411914033	1.0868449844649593	AT2G29540	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005515,protein binding; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0046983,protein dimerization activity;	RPC19, POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2; K03020;	NP_001031443.1 RNApolymerase 14 kDa subunit [Arabidopsis thaliana]	10	21	27	18
AT2G32890	translation only	-0.0057355576880199	-1.11951149788046	AT2G32890	--	GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0007267,cell-cell signaling; GO:0019722,calcium-mediated signaling; GO:0048046,apoplast;	--	NP_180848.1 RALF-like 17 [Arabidopsis thaliana]	43	61	23	10
AT2G33060	translation only	0.02031850746731843	1.0433143842263652	AT2G33060	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_180865.2 receptor like protein 27 [Arabidopsis thaliana]	12	12	9	22
AT2G33320	translation only	-0.5319696352037603	-1.1846121934881242	AT2G33320	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006952,defense response;	--	NP_180890.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	53	45	13	15
AT2G36790	translation only	-0.3267925924464566	1.826681874600901	AT2G36790	--	GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity;	UGT73C6; flavonol-3-O-L-rhamnoside-7-O-glucosyltransferase [EC:2.4.1.-]; K22771;	NP_181217.1 UDP-glucosyl transferase 73C6 [Arabidopsis thaliana]	11	12	19	33
AT2G36970	translation only	0.4805163808564617	-1.0229145945608105	AT2G36970	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_181234.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	39	36	11	13
AT2G37480	translation only	0.14942325977382143	1.5069097235722215	AT2G37480	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_850283.1 hypothetical protein AT2G37480 [Arabidopsis thaliana]	56	68	136	100
AT2G40640	translation only	0.22597934786558535	1.1070663181369682	AT2G40640	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_850332.1 RING/U-box superfamily protein [Arabidopsis thaliana]	30	8	32	21
AT2G41750	translation only	-0.3840046968899238	-1.1218524914149526	AT2G41750	--	GO:0008033,tRNA processing; GO:0016432,tRNA-uridine aminocarboxypropyltransferase activity; GO:0016740,transferase activity;	yfiP; DTW domain-containing protein; K05812;	NP_181706.2 DTW domain-containing protein [Arabidopsis thaliana]	12	7	5	1
AT2G41760	translation only	0.696460914758023	1.9236163480408677	AT2G41760	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response; GO:0008418,protein-N-terminal asparagine amidohydrolase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0042742,defense response to bacterium; GO:0070773,protein-N-terminal glutamine amidohydrolase activity; GO:1901183,positive regulation of camalexin biosynthetic process;	NTAQ1; protein N-terminal glutamine amidohydrolase [EC:3.5.1.122]; K21286;	NP_565959.1 amino-terminal glutamine amidohydrolase [Arabidopsis thaliana]	5	8	18	15
AT2G42270	translation only	0.47470156675724046	-1.391589600743725	AT2G42270	--	GO:0000166,nucleotide binding; GO:0000388,spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]; K12854;	NP_181756.1 U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]	26	29	8	6
AT2G42940	translation only	-0.5381307203462943	-2.395121473864044	AT2G42940	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010208,pollen wall assembly; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010529,negative regulation of transposition; GO:0031490,chromatin DNA binding; GO:0035067,negative regulation of histone acetylation; GO:1900111,positive regulation of histone H3-K9 dimethylation;	--	NP_181822.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	49	55	6	7
AT2G43350	translation only	0.08514407429206594	-1.0504784178074422	AT2G43350	--	GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0016491,oxidoreductase activity; GO:0042542,response to hydrogen peroxide; GO:0042631,cellular response to water deprivation; GO:0098869,cellular oxidant detoxification; GO:0110165,cellular anatomical entity;	gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9]; K00432;	NP_001189742.1 glutathione peroxidase 3 [Arabidopsis thaliana]	33	27	10	9
AT2G43540	translation only	-0.8888696527083182	1.8366566028132296	AT2G43540	--	GO:0016020,membrane;	--	NP_566001.1 transmembrane protein [Arabidopsis thaliana]	11	5	25	13
AT2G43640	translation only	0.3808001460171101	1.0760320180348248	AT2G43640	--	GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0030942,endoplasmic reticulum signal peptide binding; GO:0045047,protein targeting to ER; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP14; signal recognition particle subunit SRP14; K03104;	NP_001189744.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]	29	34	57	33
AT2G46200	translation only	-0.28773097526423347	1.347417702602416	AT2G46200	--	GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:1990904,ribonucleoprotein complex;	--	NP_850448.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]	25	13	25	36
AT2G46910	translation only	-0.9357656837648444	-1.280908377029869	AT2G46910	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule;	--	NP_566091.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]	134	152	47	32
AT2G47000	translation only	-0.34319037077244635	1.3226919800655943	AT2G47000	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0009630,gravitropism; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009735,response to cytokinin; GO:0009926,auxin polar transport; GO:0010315,auxin export across the plasma membrane; GO:0010328,auxin influx transmembrane transporter activity; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010540,basipetal auxin transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0060919,auxin import into cell; GO:0140359,ABC-type transporter activity;	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658;	NP_001323911.1 ATP binding cassette subfamily B4 [Arabidopsis thaliana]	23	3	22	19
AT2G47780	translation only	0.758134520814643	2.0034067002069573	AT2G47780	--	GO:0005811,lipid droplet; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation;	--	NP_182299.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana]	5	7	12	19
AT3G01430	translation only	0.7616336550291816	-1.283292548855654	AT3G01430	--	--	--	NP_186792.1 NHL domain protein [Arabidopsis thaliana]	24	8	8	1
AT3G04690	translation only	-0.4433531123629965	-1.8663175055662111	AT3G04690	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation; GO:0090404,pollen tube tip; GO:0106310,protein serine kinase activity;	--	NP_187120.1 Malectin/receptor-like protein kinase family protein [Arabidopsis thaliana]	16	18	2	4
AT3G05800	translation only	-0.3365245675398342	1.109015241463749	AT3G05800	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity;	--	NP_566260.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 [Arabidopsis thaliana]	44	46	67	61
AT3G06830	translation only	-0.5206810765842771	-1.1021267132849348	AT3G06830	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; GO:0090406,pollen tube;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_187339.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	32	45	13	11
AT3G09550	translation only	0.37065070802436473	-1.7622667976424722	AT3G09550	--	GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001319511.1 Ankyrin repeat family protein [Arabidopsis thaliana]	37	45	8	8
AT3G10040	translation only	-0.9813993969587576	-1.3500379476280358	AT3G10040	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010629,negative regulation of gene expression; GO:0071456,cellular response to hypoxia; GO:1900037,regulation of cellular response to hypoxia;	--	NP_187615.2 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	37	21	15	1
AT3G11570	translation only	-0.5892501576290986	-2.147269842836203	AT3G11570	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	--	NP_187764.1 TRICHOME BIREFRINGENCE-LIKE 8 [Arabidopsis thaliana]	15	17	4	1
AT3G13000	translation only	0.5945975982410986	1.0186936939160949	AT3G13000	--	GO:0000325,plant-type vacuole; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_001327605.1 ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]	46	17	44	38
AT3G14210	translation only	-0.9296959391404972	2.074657724772688	AT3G14210	--	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009625,response to insect; GO:0009941,chloroplast envelope; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_188037.1 GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]	536	601	1877	1333
AT3G15352	translation only	-0.5322606266399025	1.075540138496692	AT3G15352	--	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005758,mitochondrial intermembrane space; GO:0009617,response to bacterium; GO:0016020,membrane; GO:0016531,copper chaperone activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding;	COX17; cytochrome c oxidase assembly protein subunit 17; K02260;	NP_566508.1 cytochrome c oxidase 17 [Arabidopsis thaliana]	16	1	20	4
AT3G16400	translation only	-0.7788756082464202	-1.228874799161474	AT3G16400	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0030246,carbohydrate binding; GO:0050790,regulation of catalytic activity; GO:0080027,response to herbivore; GO:0080028,nitrile biosynthetic process;	--	NP_001030709.1 nitrile specifier protein 1 [Arabidopsis thaliana]	29	33	6	11
AT3G16460	translation only	0.35400401935868053	-2.5536278534236327	AT3G16460	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding;	--	NP_188267.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	23	30	3	3
AT3G21180	translation only	-0.06404882487273517	-1.0360241570944304	AT3G21180	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009555,pollen development; GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_188755.2 autoinhibited Ca(2+)-ATPase 9 [Arabidopsis thaliana]	140	123	60	27
AT3G22680	translation only	0.560343271012917	1.494903025344886	AT3G22680	--	GO:0000419,RNA polymerase V complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006306,DNA methylation; GO:0043621,protein self-association; GO:0044030,regulation of DNA methylation; GO:0070918,small regulatory ncRNA processing;	--	NP_188907.2 RNA-DIRECTED DNA METHYLATION 1 [Arabidopsis thaliana]	66	28	73	94
AT3G26210	translation only	-0.29047794514994946	-2.0980762473749746	AT3G26210	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_189252.1 cytochrome P450, family 71, subfamily B, polypeptide 23 [Arabidopsis thaliana]	19	17	6	0
AT3G26730	translation only	0.7464088794854442	1.5703084534051723	AT3G26730	--	GO:0000976,transcription cis-regulatory region binding; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_189307.2 RING/U-box superfamily protein [Arabidopsis thaliana]	152	151	299	291
AT3G27770	translation only	0.6399412777262935	-1.181246314224785	AT3G27770	--	GO:0016020,membrane;	--	NP_566825.1 plant/protein [Arabidopsis thaliana]	49	56	18	13
AT3G47470	translation only	-0.7152218386282697	-1.047834675874014	AT3G47470	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4; K08910;	NP_190331.3 light-harvesting chlorophyll-protein complex I subunit A4 [Arabidopsis thaliana]	6551	6196	2122	1931
AT3G50430	translation only	0.8023369820252353	-1.717636010599028	AT3G50430	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190612.3 golgin [Arabidopsis thaliana]	20	20	4	4
AT3G51070	translation only	0.23279286141463396	-1.083425406399402	AT3G51070	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_190676.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	197	157	78	35
AT3G53510	translation only	-0.5688130611771535	-1.0342051291696488	AT3G53510	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1903825,organic acid transmembrane transport;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_190919.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	145	78	29	40
AT3G57190	translation only	0.2625841235303856	-1.5408699855875645	AT3G57190	--	GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0003747,translation release factor activity; GO:0005515,protein binding; GO:0006415,translational termination; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0043488,regulation of mRNA stability; GO:0043565,sequence-specific DNA binding;	--	NP_191278.2 peptide chain release factor [Arabidopsis thaliana]	24	10	7	1
AT3G59030	translation only	-0.14657735890393428	-1.2350864696893464	AT3G59030	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0009813,flavonoid biosynthetic process; GO:0010023,proanthocyanidin biosynthetic process; GO:0010231,maintenance of seed dormancy; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_191462.1 MATE efflux family protein [Arabidopsis thaliana]	20	13	4	5
AT3G59410	translation only	0.6944912203167259	-1.3243383341456485	AT3G59410	--	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004694,eukaryotic translation initiation factor 2alpha kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006417,regulation of translation; GO:0006468,protein phosphorylation; GO:0006521,regulation of cellular amino acid metabolic process; GO:0009635,response to herbicide; GO:0010998,regulation of translational initiation by eIF2 alpha phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0034198,cellular response to amino acid starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0070301,cellular response to hydrogen peroxide; GO:0072755,cellular response to benomyl; GO:0080090,regulation of primary metabolic process; GO:0106310,protein serine kinase activity; GO:1990451,cellular stress response to acidic pH;	EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1]; K16196;	NP_001326041.1 protein kinase family protein [Arabidopsis thaliana]	61	48	18	11
AT3G61160	translation only	0.13810072742202056	1.195742516577019	AT3G61160	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity;	--	NP_001326846.1 Protein kinase superfamily protein [Arabidopsis thaliana]	4	11	11	12
AT3G61630	translation only	-0.10850982084467448	2.9209945020890373	AT3G61630	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development; GO:0048825,cotyledon development;	--	NP_191722.1 cytokinin response factor 6 [Arabidopsis thaliana]	29	20	156	92
AT3G62420	translation only	0.6029903840337608	1.672204532361801	AT3G62420	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006971,hypotonic response; GO:0009267,cellular response to starvation; GO:0043565,sequence-specific DNA binding; GO:0045735,nutrient reservoir activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; GO:2000693,positive regulation of seed maturation;	--	NP_191801.1 basic region/leucine zipper motif 53 [Arabidopsis thaliana]	10	9	12	26
AT3G63140	translation only	-0.5710857134191537	-1.272433527783988	AT3G63140	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast;	--	NP_191873.1 chloroplast stem-loop binding protein of 41 kDa [Arabidopsis thaliana]	711	596	210	149
AT3G63210	translation only	-0.702869386785295	1.2547230111521328	AT3G63210	--	GO:0000932,P-body; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0010162,seed dormancy process; GO:0010494,cytoplasmic stress granule; GO:0019900,kinase binding; GO:0046872,metal ion binding; GO:1905582,response to mannose;	--	NP_567143.1 mediator of aba-regulated dormancy protein (DUF581) [Arabidopsis thaliana]	19	28	46	30
AT4G00390	translation only	0.293063573643557	-1.074549162847258	AT4G00390	GeBP	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription;	--	NP_191949.1 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]	26	10	6	5
AT4G01670	translation only	0.4010595601273112	1.1699713603215602	AT4G01670	--	--	--	NP_192076.2 hypothetical protein AT4G01670 [Arabidopsis thaliana]	8	4	12	6
AT4G01790	translation only	-0.01415598093471282	1.5113331983446068	AT4G01790	--	GO:0003674,molecular_function; GO:0005840,ribosome; GO:0008150,biological_process;	--	NP_192088.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	9	4	8	15
AT4G02520	translation only	-0.16069052997870492	-1.1434444115016502	AT4G02520	--	GO:0000325,plant-type vacuole; GO:0002239,response to oomycetes; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009734,auxin-activated signaling pathway; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019904,protein domain specific binding; GO:0042221,response to chemical; GO:0043231,intracellular membrane-bounded organelle; GO:0043295,glutathione binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding; GO:2001147,camalexin binding; GO:2001227,quercitrin binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_192161.1 glutathione S-transferase PHI 2 [Arabidopsis thaliana]	50	54	27	6
AT4G03260	translation only	0.3302475895565761	1.6277260178658122	AT4G03260	--	GO:0000226,microtubule cytoskeleton organization; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008017,microtubule binding; GO:0009819,drought recovery; GO:0019901,protein kinase binding; GO:0045926,negative regulation of growth; GO:0046777,protein autophosphorylation;	--	NP_001118925.1 Outer arm dynein light chain 1 protein [Arabidopsis thaliana]	34	24	77	43
AT4G09650	translation only	-0.7072566338206722	-1.034003713141662	AT4G09650	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport;	ATPF1D, atpH; F-type H+-transporting ATPase subunit delta; K02113;	NP_192703.1 F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana]	938	894	325	267
AT4G10100	translation only	0.7953830791332578	1.01953088167919	AT4G10100	--	GO:0000166,nucleotide binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0009734,auxin-activated signaling pathway; GO:0018315,molybdenum incorporation into molybdenum-molybdopterin complex; GO:0019008,molybdopterin synthase complex; GO:0030366,molybdopterin synthase activity;	MOCS2A, CNXG; molybdopterin synthase sulfur carrier subunit; K21232;	NP_001078366.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7 [Arabidopsis thaliana]	16	16	29	15
AT4G12080	translation only	0.28914877823138574	2.216253703948991	AT4G12080	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0043565,sequence-specific DNA binding; GO:0098687,chromosomal region;	--	NP_192945.2 AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana]	12	8	39	23
AT4G14700	translation only	0.2084778241831567	-1.905449701626212	AT4G14700	--	GO:0000166,nucleotide binding; GO:0000808,origin recognition complex; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003688,DNA replication origin binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005664,nuclear origin of replication recognition complex; GO:0006260,DNA replication; GO:0006270,DNA replication initiation; GO:0006355,regulation of DNA-templated transcription; GO:0010385,double-stranded methylated DNA binding; GO:0016887,ATP hydrolysis activity; GO:0033314,mitotic DNA replication checkpoint signaling; GO:0046872,metal ion binding;	ORC1; origin recognition complex subunit 1; K02603;	NP_567440.1 origin recognition complex 1 [Arabidopsis thaliana]	33	17	7	2
AT4G18205	translation only	-0.624768336367179	1.2382158470009317	AT4G18205	--	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport;	--	NP_001031664.1 Nucleotide-sugar transporter family protein [Arabidopsis thaliana]	5	6	3	13
AT4G19000	translation only	-0.03399014343171932	3.518802204567504	AT4G19000	--	GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0006414,translational elongation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032784,regulation of DNA-templated transcription elongation;	--	NP_001319989.1 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]	2	1	10	12
AT4G20325	translation only	0.5190641694770071	-2.0257666922861515	AT4G20325	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006401,RNA catabolic process; GO:0032299,ribonuclease H2 complex;	RNASEH2B; ribonuclease H2 subunit B; K10744;	NP_001078412.2 ribonuclease H2 subunit B [Arabidopsis thaliana]	16	19	5	1
AT4G20420	translation only	-0.3806022967703898	-1.4061500422445083	AT4G20420	--	GO:0008150,biological_process;	--	NP_193775.1 Tapetum specific protein TAP35/TAP44 [Arabidopsis thaliana]	246	200	62	49
AT4G21190	translation only	0.3526751960133512	1.609066745864275	AT4G21190	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_567622.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	18	15	45	23
AT4G21310	translation only	0.48809917115464074	-1.325564636110507	AT4G21310	--	GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008150,biological_process; GO:0009855,determination of bilateral symmetry; GO:0016020,membrane; GO:0048366,leaf development;	--	NP_193862.1 transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]	39	25	5	11
AT4G26090	translation only	-0.08715809912747527	-1.129784150761354	AT4G26090	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0016020,membrane; GO:0016045,detection of bacterium; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0098542,defense response to other organism;	RPS2; disease resistance protein RPS2; K13459;	NP_194339.1 NB-ARC domain-containing disease resistance protein [Arabidopsis thaliana]	20	16	7	4
AT4G27860	translation only	-0.3201038627969383	1.3807263624289257	AT4G27860	--	GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006880,intracellular sequestering of iron ion; GO:0010168,ER body; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0071421,manganese ion transmembrane transport;	--	NP_001190855.1 vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]	20	19	31	35
AT4G29580	translation only	-0.03273650600614617	2.7807010833763885	AT4G29580	--	GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005829,cytosol; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process;	--	NP_001154274.1 Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]	5	2	16	15
AT4G30370	translation only	0.8839682833172814	1.342503259828029	AT4G30370	--	GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_194766.1 RING/U-box superfamily protein [Arabidopsis thaliana]	6	3	9	6
AT4G30850	translation only	-0.2183175414172412	-1.292758593355529	AT4G30850	--	GO:0009725,response to hormone; GO:0009744,response to sucrose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0038023,signaling receptor activity;	--	NP_194814.2 heptahelical transmembrane protein2 [Arabidopsis thaliana]	104	94	21	31
AT4G31020	translation only	-0.1229275590818041	-1.3008220736680272	AT4G31020	--	GO:0008150,biological_process; GO:0008474,palmitoyl-(protein) hydrolase activity; GO:0098734,macromolecule depalmitoylation;	--	NP_194831.3 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	9	10	2	3
AT4G33100	translation only	0.03028434406196991	1.5720970590564736	AT4G33100	--	GO:0005634,nucleus; GO:0005758,mitochondrial intermembrane space; GO:0008150,biological_process; GO:0045332,phospholipid translocation; GO:0120009,intermembrane lipid transfer; GO:1990050,phosphatidic acid transfer activity;	--	NP_195036.1 protein phosphatase [Arabidopsis thaliana]	10	5	6	21
AT4G33355	translation only	-0.4116031506798325	-1.8785337878241353	AT4G33355	--	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding;	--	NP_680758.3 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	315	304	58	53
AT4G35420	translation only	0.9623998612505944	-1.4226444924744828	AT4G35420	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009555,pollen development; GO:0010584,pollen exine formation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0048316,seed development; GO:0080110,sporopollenin biosynthetic process;	--	NP_195268.2 dihydroflavonol 4-reductase-like1 [Arabidopsis thaliana]	199	221	62	43
AT4G36770	translation only	-0.8613800357247935	-1.2212296575260837	AT4G36770	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_195395.4 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	36	29	14	5
AT4G37050	translation only	-0.1663533023523084	-1.2180863446720571	AT4G37050	--	GO:0004620,phospholipase activity; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009737,response to abscisic acid; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0047372,acylglycerol lipase activity;	--	NP_195422.3 PATATIN-like protein 4 [Arabidopsis thaliana]	10	13	6	1
AT4G37560	translation only	-0.22389500746282393	-1.7409758251205791	AT4G37560	--	GO:0005829,cytosol; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	E3.5.1.49; formamidase [EC:3.5.1.49]; K01455;	NP_568029.1 Acetamidase/Formamidase family protein [Arabidopsis thaliana]	20	25	5	4
AT4G38540	translation only	-0.10841928227190654	1.3247388387999015	AT4G38540	--	GO:0002239,response to oomycetes; GO:0004497,monooxygenase activity; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity; GO:0071949,FAD binding;	--	NP_195566.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	2	10	8	12
AT4G39030	translation only	0.00559659563723979	-1.1092614353423729	AT4G39030	--	GO:0002376,immune system process; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0009697,salicylic acid biosynthetic process; GO:0009751,response to salicylic acid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031348,negative regulation of defense response; GO:0031969,chloroplast membrane; GO:0042742,defense response to bacterium; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0045087,innate immune response; GO:0055085,transmembrane transport;	--	NP_195614.2 MATE efflux family protein [Arabidopsis thaliana]	54	58	22	13
AT4G39270	translation only	-0.4997782660297459	-1.4610782888006622	AT4G39270	--	GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_001329133.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	11	9	4	1
AT5G03330	translation only	0.28402711884994003	-1.1850035911119916	AT5G03330	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001331866.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	38	44	19	6
AT5G05590	translation only	-0.4050897048159787	-1.5820271019987648	AT5G05590	--	GO:0000162,tryptophan biosynthetic process; GO:0004640,phosphoribosylanthranilate isomerase activity; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016853,isomerase activity;	trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]; K01817;	NP_196178.2 phosphoribosylanthranilate isomerase 2 [Arabidopsis thaliana]	8	14	3	2
AT5G05990	translation only	0.8668218671328802	1.0390109562445922	AT5G05990	--	GO:0003674,molecular_function; GO:0005759,mitochondrial matrix; GO:0008150,biological_process;	--	NP_196218.1 Mitochondrial glycoprotein family protein [Arabidopsis thaliana]	25	18	32	26
AT5G06930	translation only	-0.9168658475690148	-2.130821873324648	AT5G06930	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005643,nuclear pore;	--	NP_001318495.1 nucleolar-like protein [Arabidopsis thaliana]	23	24	3	4
AT5G08270	translation only	-0.3247633380511643	-1.169475391308517	AT5G08270	--	--	--	NP_196444.1 C5orf35 [Arabidopsis thaliana]	23	26	11	4
AT5G08340	translation only	0.5431078044556281	-1.5248147318709275	AT5G08340	--	GO:0000166,nucleotide binding; GO:0003919,FMN adenylyltransferase activity; GO:0005524,ATP binding; GO:0006747,FAD biosynthetic process; GO:0009231,riboflavin biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity;	RIBF; FAD synthetase [EC:2.7.7.2]; K22949;	NP_568192.2 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]	22	18	10	0
AT5G08400	translation only	-0.6371265801096806	1.3684128188841	AT5G08400	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001031856.1 structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]	35	47	81	61
AT5G10720	translation only	0.04941117236421119	-1.477096078792661	AT5G10720	--	GO:0000155,phosphorelay sensor kinase activity; GO:0000160,phosphorelay signal transduction system; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004673,protein histidine kinase activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007165,signal transduction; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0009927,histidine phosphotransfer kinase activity; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0018106,peptidyl-histidine phosphorylation; GO:0042221,response to chemical; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0048856,anatomical structure development; GO:0070301,cellular response to hydrogen peroxide; GO:0071219,cellular response to molecule of bacterial origin; GO:0071732,cellular response to nitric oxide; GO:0090333,regulation of stomatal closure;	--	NP_196633.2 histidine kinase 5 [Arabidopsis thaliana]	17	6	1	4
AT5G10930	translation only	-0.0695587784443657	1.3271491775293165	AT5G10930	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050896,response to stimulus; GO:0051592,response to calcium ion; GO:0106310,protein serine kinase activity;	--	NP_568241.2 CBL-interacting protein kinase 5 [Arabidopsis thaliana]	15	8	28	11
AT5G13670	translation only	-0.16630987327778066	-1.2795353303979065	AT5G13670	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_196871.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	19	18	5	5
AT5G15760	translation only	0.3699686757932223	1.0570769627213183	AT5G15760	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:1990904,ribonucleoprotein complex;	--	NP_197080.1 Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]	13	6	16	10
AT5G16340	translation only	-0.22317328021840768	-1.0842838646742436	AT5G16340	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_197138.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	49	70	17	20
AT5G18100	translation only	0.5384535296763242	1.1411734735400805	AT5G18100	--	GO:0000325,plant-type vacuole; GO:0004784,superoxide dismutase activity; GO:0005507,copper ion binding; GO:0005777,peroxisome; GO:0006801,superoxide metabolic process; GO:0006979,response to oxidative stress; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0019430,removal of superoxide radicals; GO:0046872,metal ion binding; GO:0071457,cellular response to ozone; GO:0071472,cellular response to salt stress; GO:0071484,cellular response to light intensity; GO:0071486,cellular response to high light intensity; GO:0071493,cellular response to UV-B; GO:0098869,cellular oxidant detoxification;	SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]; K04565;	NP_197311.1 copper/zinc superoxide dismutase 3 [Arabidopsis thaliana]	77	70	117	97
AT5G18748	translation only	-0.05836015877081043	2.6112050532731836	AT5G18748	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001119250.1 hypothetical protein AT5G18748 [Arabidopsis thaliana]	12	5	30	36
AT5G19340	translation only	0.02557022821773498	1.1455246372225374	AT5G19340	--	GO:0005515,protein binding;	--	NP_197435.2 hypothetical protein AT5G19340 [Arabidopsis thaliana]	32	36	50	49
AT5G20110	translation only	0.8944082919559412	1.7398748890867566	AT5G20110	--	GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005868,cytoplasmic dynein complex; GO:0005874,microtubule; GO:0007017,microtubule-based process; GO:0030286,dynein complex; GO:0045505,dynein intermediate chain binding; GO:0110165,cellular anatomical entity;	DYNLL; dynein light chain LC8-type; K10418;	NP_197511.1 Dynein light chain type 1 family protein [Arabidopsis thaliana]	6	11	10	26
AT5G23070	translation only	0.879904376895475	1.1071226889162535	AT5G23070	--	GO:0000166,nucleotide binding; GO:0004797,thymidine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009157,deoxyribonucleoside monophosphate biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046104,thymidine metabolic process; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:0090351,seedling development;	tdk, TK; thymidine kinase [EC:2.7.1.21]; K00857;	NP_568426.1 Thymidine kinase [Arabidopsis thaliana]	36	29	55	38
AT5G24460	translation only	0.4483445740532223	1.6361979323008995	AT5G24460	--	--	--	NP_197834.1 RING-H2 zinc finger protein [Arabidopsis thaliana]	11	15	35	20
AT5G24680	translation only	-0.137280404359052	1.0792126389410164	AT5G24680	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0010468,regulation of gene expression;	--	NP_197856.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Arabidopsis thaliana]	11	4	9	11
AT5G25530	translation only	0.08546021861502968	-1.6593270043116652	AT5G25530	--	GO:0005829,cytosol; GO:0006457,protein folding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding;	--	NP_001332583.1 DNAJ heat shock family protein [Arabidopsis thaliana]	10	10	1	3
AT5G26700	translation only	0.7477769138792804	-1.428940534123371	AT5G26700	--	GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development;	--	NP_850875.1 RmlC-like cupins superfamily protein [Arabidopsis thaliana]	25	18	9	2
AT5G27120	translation only	0.6217676109522383	1.0063477079475605	AT5G27120	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	NOP58; nucleolar protein 58; K14565;	NP_198064.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	333	355	528	394
AT5G27430	translation only	0.5110281756793591	-1.2333396398917005	AT5G27430	--	GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER;	SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948;	NP_198095.1 Signal peptidase subunit [Arabidopsis thaliana]	47	68	25	9
AT5G41860	translation only	-0.4760358099187132	1.0934747641334734	AT5G41860	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_199001.1 transmembrane protein [Arabidopsis thaliana]	66	50	81	80
AT5G42750	translation only	-0.4616760307902295	1.3092987955464157	AT5G42750	--	GO:0004860,protein kinase inhibitor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010423,negative regulation of brassinosteroid biosynthetic process; GO:0016020,membrane; GO:0019210,kinase inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046982,protein heterodimerization activity;	BKI1; BRI1 kinase inhibitor 1; K14499;	NP_568610.1 BRI1 kinase inhibitor 1 [Arabidopsis thaliana]	11	3	11	11
AT5G43950	translation only	0.6474675780912235	1.0839808770870327	AT5G43950	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_199208.1 vacuolar protein sorting-associated protein (DUF946) [Arabidopsis thaliana]	12	7	13	13
AT5G49560	translation only	0.33022003907372915	1.8725905200888824	AT5G49560	--	GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_199767.1 Putative methyltransferase family protein [Arabidopsis thaliana]	11	0	13	12
AT5G51670	translation only	0.01916783927614603	-1.2443957225622502	AT5G51670	--	GO:0045927,positive regulation of growth;	--	NP_001318781.1 hypothetical protein (DUF668) [Arabidopsis thaliana]	52	27	14	8
AT5G53810	translation only	0.21808875171582456	-1.07717590267186	AT5G53810	--	GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0032259,methylation; GO:0046983,protein dimerization activity;	--	NP_200192.1 O-methyltransferase family protein [Arabidopsis thaliana]	13	16	4	5
AT5G54090	translation only	-0.4928307120220326	1.4209930993293365	AT5G54090	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0004519,endonuclease activity; GO:0005524,ATP binding; GO:0006298,mismatch repair; GO:0016887,ATP hydrolysis activity; GO:0030983,mismatched DNA binding; GO:0045910,negative regulation of DNA recombination; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0140664,ATP-dependent DNA damage sensor activity;	--	NP_200220.2 DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana]	12	11	24	17
AT5G54300	translation only	0.23430590159125292	1.2532551099211349	AT5G54300	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_200241.1 cotton fiber-like protein (DUF761) [Arabidopsis thaliana]	23	25	62	18
AT5G55490	translation only	-0.6639222002703825	-1.5283775505676946	AT5G55490	--	GO:0005886,plasma membrane; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0042802,identical protein binding;	--	NP_001330005.1 gamete expressed protein 1 [Arabidopsis thaliana]	8	17	4	2
AT5G57780	translation only	0.00966191422170563	2.674095341015346	AT5G57780	--	GO:0006355,regulation of DNA-templated transcription;	--	NP_200586.1 transcription factor [Arabidopsis thaliana]	3	5	18	16
AT5G58310	translation only	-0.40926410692294096	-1.382989894259853	AT5G58310	--	GO:0005575,cellular_component; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_200639.1 methyl esterase 18 [Arabidopsis thaliana]	110	70	36	11
AT5G58840	translation only	-0.062599113504477	-3.2754574696771956	AT5G58840	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_568890.2 Subtilase family protein [Arabidopsis thaliana]	32	27	2	2
AT5G62770	translation only	0.3745960271346928	1.1987836926861426	AT5G62770	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_201083.1 membrane-associated kinase regulator, putative (DUF1645) [Arabidopsis thaliana]	25	22	33	37
AT5G64410	translation only	-0.4115175318271056	-1.0387359365662283	AT5G64410	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_201246.1 oligopeptide transporter 4 [Arabidopsis thaliana]	199	153	70	44
AT1G01040	no change	0.5063012028315342	-0.5075395397385517	AT1G01040	--	GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003725,double-stranded RNA binding; GO:0004386,helicase activity; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004525,ribonuclease III activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0009616,RNAi-mediated antiviral immune response; GO:0009880,embryonic pattern specification; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010267,ta-siRNA processing; GO:0010445,nuclear dicing body; GO:0010599,lsiRNA processing; GO:0016787,hydrolase activity; GO:0016891,endoribonuclease activity, producing 5'-phosphomonoesters; GO:0030422,siRNA processing; GO:0031047,gene silencing by RNA; GO:0031053,primary miRNA processing; GO:0035279,miRNA-mediated gene silencing by mRNA destabilization; GO:0046872,metal ion binding; GO:0048317,seed morphogenesis; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; GO:2000034,regulation of seed maturation;	DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-]; K11592;	NP_171612.1 dicer-like 1 [Arabidopsis thaliana]	152	139	84	53
AT1G01160	no change	0.13020910303795283	-0.07876940549588243	AT1G01160	--	GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008283,cell population proliferation; GO:0045787,positive regulation of cell cycle; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048366,leaf development;	--	NP_563619.1 GRF1-interacting factor 2 [Arabidopsis thaliana]	40	25	21	19
AT1G01170	no change	0.6353012185988999	0.07811118561943563	AT1G01170	--	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_001030926.1 ozone-responsive stress-like protein (DUF1138) [Arabidopsis thaliana]	146	199	146	100
AT1G01300	no change	0.8431316861113161	0.0782917845360089	AT1G01300	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity;	--	NP_171637.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	1626	1377	1137	950
AT1G01490	no change	-0.18360572108713707	0.27253453157368335	AT1G01490	--	GO:0046872,metal ion binding;	--	NP_001321838.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]	62	66	74	32
AT1G01730	no change	0.38379964600028854	-0.25368168084785375	AT1G01730	--	GO:0008150,biological_process;	--	NP_563634.1 hypothetical protein AT1G01730 [Arabidopsis thaliana]	51	47	39	17
AT1G01830	no change	-0.2329403675890381	-0.10741519726701816	AT1G01830	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001077443.1 ARM repeat superfamily protein [Arabidopsis thaliana]	204	158	122	99
AT1G02180	no change	-0.4590198631359155	-0.25011703971419885	AT1G02180	--	GO:0005575,cellular_component;	--	NP_171720.2 ferredoxin-like protein [Arabidopsis thaliana]	50	33	27	19
AT1G02720	no change	-0.2038426539969535	-0.4107947059888892	AT1G02720	--	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0048354,mucilage biosynthetic process involved in seed coat development; GO:0048363,mucilage pectin metabolic process; GO:0071555,cell wall organization; GO:0071668,plant-type cell wall assembly;	--	NP_171772.1 galacturonosyltransferase 5 [Arabidopsis thaliana]	25	27	25	3
AT1G03090	no change	0.8138236654865111	-0.3389764061440162	AT1G03090	--	GO:0000166,nucleotide binding; GO:0004485,methylcrotonoyl-CoA carboxylase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006552,leucine catabolic process; GO:0016874,ligase activity; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0050897,cobalt ion binding;	E6.4.1.4A; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]; K01968;	NP_849583.1 methylcrotonyl-CoA carboxylase alpha chain [Arabidopsis thaliana]	129	144	76	67
AT1G03100	no change	-0.30479728876602896	-0.15013587401308912	AT1G03100	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_171809.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	7	18	12	4
AT1G03220	no change	-0.35276148808392266	-0.2633503780343458	AT1G03220	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009506,plasmodesma; GO:0071456,cellular response to hypoxia; GO:0099503,secretory vesicle;	--	NP_171821.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	152	114	88	59
AT1G03230	no change	-0.858830252828006	-0.2505371210171508	AT1G03230	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_563679.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	88	64	47	37
AT1G03290	no change	0.29363543818751664	0.16601923153354262	AT1G03290	--	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0005634,nucleus; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_001184898.1 ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]	124	78	97	54
AT1G03440	no change	-0.566403476243008	0.46266650815073296	AT1G03440	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0006952,defense response;	--	NP_563685.2 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	89	93	100	68
AT1G03600	no change	0.06649619717586888	-0.12878387607397007	AT1G03600	--	GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0010206,photosystem II repair; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0071484,cellular response to light intensity;	psb27; photosystem II Psb27 protein; K08902;	NP_563687.1 photosystem II family protein [Arabidopsis thaliana]	280	230	152	152
AT1G03780	no change	0.17477588002801114	0.05658649762416172	AT1G03780	--	GO:0000278,mitotic cell cycle; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005880,nuclear microtubule; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009941,chloroplast envelope; GO:0030295,protein kinase activator activity; GO:0032147,activation of protein kinase activity; GO:0051225,spindle assembly; GO:0051301,cell division; GO:0060236,regulation of mitotic spindle organization; GO:0072686,mitotic spindle; GO:0090307,mitotic spindle assembly;	--	NP_001184902.1 targeting protein for XKLP2 [Arabidopsis thaliana]	101	108	83	62
AT1G04030	no change	0.6657420179665149	-0.20383202497626365	AT1G04030	--	GO:0003674,molecular_function; GO:0007142,male meiosis II;	--	NP_001320872.1 eisosome protein [Arabidopsis thaliana]	31	27	17	16
AT1G04040	no change	-0.39882434581967446	0.8107312439222557	AT1G04040	--	GO:0000325,plant-type vacuole; GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0045735,nutrient reservoir activity;	--	NP_563698.1 HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	39	42	45	48
AT1G04230	no change	0.7878719755867009	0.3508202381324114	AT1G04230	--	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0030688,preribosome, small subunit precursor;	--	NP_171919.3 rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]	35	26	33	19
AT1G04280	no change	0.2749207640355382	0.16508293087098133	AT1G04280	--	GO:0000166,nucleotide binding; GO:0003951,NAD+ kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0006741,NADP biosynthetic process; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_171924.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	18	22	17	13
AT1G04290	no change	-0.38962613027406695	-0.2500690710714741	AT1G04290	--	GO:0005777,peroxisome; GO:0008150,biological_process; GO:0047617,acyl-CoA hydrolase activity;	--	NP_563705.1 Thioesterase superfamily protein [Arabidopsis thaliana]	239	178	120	109
AT1G04350	no change	0.23440313199316612	0.4362747756358742	AT1G04350	--	GO:0005576,extracellular region; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_171930.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	72	88	83	62
AT1G04540	no change	-0.297724696876563	-0.48665882261071913	AT1G04540	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006952,defense response;	--	NP_171948.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	11	10	6	4
AT1G04760	no change	0.9073262538841582	-0.6003990654886429	AT1G04760	--	GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031901,early endosome membrane;	--	NP_001323352.1 vesicle-associated membrane protein 726 [Arabidopsis thaliana]	25	21	11	9
AT1G04790	no change	-0.05116985488072688	0.3506027735165013	AT1G04790	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_563717.1 RING/U-box superfamily protein [Arabidopsis thaliana]	65	97	58	77
AT1G05190	no change	-0.7246513982850278	0.12006478862374796	AT1G05190	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009793,embryo development ending in seed dormancy; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L6, MRPL6, rplF; large subunit ribosomal protein L6; K02933;	NP_172011.1 Ribosomal protein L6 family [Arabidopsis thaliana]	417	467	357	283
AT1G05630	no change	0.07407750720451203	0.03857989515720016	AT1G05630	--	GO:0003824,catalytic activity; GO:0004439,phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; GO:0004445,inositol-polyphosphate 5-phosphatase activity; GO:0004519,endonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0007584,response to nutrient; GO:0009611,response to wounding; GO:0009630,gravitropism; GO:0009637,response to blue light; GO:0009737,response to abscisic acid; GO:0009743,response to carbohydrate; GO:0009846,pollen germination; GO:0010087,phloem or xylem histogenesis; GO:0010182,sugar mediated signaling pathway; GO:0010252,auxin homeostasis; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046856,phosphatidylinositol dephosphorylation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0052658,inositol-1,4,5-trisphosphate 5-phosphatase activity; GO:0052659,inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	--	NP_172054.3 Endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]	553	317	225	335
AT1G05730	no change	0.2787771892889957	0.15169193896122837	AT1G05730	--	GO:0005737,cytoplasm; GO:0008150,biological_process;	--	NP_172064.2 FAM136A-like protein (DUF842) [Arabidopsis thaliana]	14	19	26	1
AT1G05805	no change	0.31886700045538946	-0.5238272378336309	AT1G05805	bHLH	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009416,response to light stimulus; GO:0010119,regulation of stomatal movement; GO:0046983,protein dimerization activity; GO:1902456,regulation of stomatal opening; GO:1903286,regulation of potassium ion import;	--	NP_563749.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	139	82	54	46
AT1G05835	no change	-0.4402194512778462	-0.3937188959294195	AT1G05835	--	GO:0001709,cell fate determination; GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_001077465.1 PHD finger protein [Arabidopsis thaliana]	29	66	21	27
AT1G05840	no change	-0.47360841490205785	0.2139665498089007	AT1G05840	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity;	--	NP_563751.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	203	176	149	139
AT1G06400	no change	0.07805158787829036	0.8356866439827118	AT1G06400	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005576,extracellular region; GO:0005768,endosome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009733,response to auxin; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis;	--	NP_172128.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]	95	102	111	119
AT1G06450	no change	-0.618437803777197	-0.16104908812966742	AT1G06450	--	GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_172133.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	34	21	17	15
AT1G06470	no change	0.46645965257363114	-0.4153368850405096	AT1G06470	--	GO:0005793,endoplasmic reticulum-Golgi intermediate compartment; GO:0005794,Golgi apparatus; GO:0005801,cis-Golgi network; GO:0008643,carbohydrate transport; GO:0015297,antiporter activity; GO:0015786,UDP-glucose transmembrane transport; GO:0016020,membrane;	--	NP_001318934.1 Nucleotide/sugar transporter family protein [Arabidopsis thaliana]	75	80	47	31
AT1G06500	no change	-0.6289118420740526	-0.4259613809517196	AT1G06500	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001030980.1 hypothetical protein AT1G06500 [Arabidopsis thaliana]	10	33	7	14
AT1G06515	no change	0.8064398120128625	0.06260112847593942	AT1G06515	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009555,pollen development; GO:0016020,membrane; GO:0044877,protein-containing complex binding; GO:0090153,regulation of sphingolipid biosynthetic process; GO:1904222,positive regulation of serine C-palmitoyltransferase activity;	--	NP_001077469.1 transmembrane protein, putative (DUF3317) [Arabidopsis thaliana]	21	10	17	5
AT1G06730	no change	0.8923902990738554	-0.6065117925544663	AT1G06730	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_172158.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	75	72	30	33
AT1G06790	no change	0.5360280148810447	0.00976984770575354	AT1G06790	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006351,DNA-templated transcription; GO:0006352,DNA-templated transcription initiation; GO:0006384,transcription initiation at RNA polymerase III promoter; GO:0008380,RNA splicing; GO:0016070,RNA metabolic process;	RPC8, POLR3H; DNA-directed RNA polymerase III subunit RPC8; K03022;	NP_172164.1 RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana]	24	21	17	13
AT1G06800	no change	0.6265396275822249	-0.3440237313112604	AT1G06800	--	GO:0004620,phospholipase activity; GO:0004806,triglyceride lipase activity; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0047714,galactolipase activity;	--	NP_849603.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	44	24	20	15
AT1G07120	no change	-0.455844513286887	0.1717814722231272	AT1G07120	--	GO:0003674,molecular_function; GO:0009658,chloroplast organization; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope;	--	NP_172192.1 CHUP1-like protein [Arabidopsis thaliana]	6	10	6	6
AT1G07130	no change	0.6076129205451242	-0.3962271512872247	AT1G07130	--	GO:0000781,chromosome, telomeric region; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0016233,telomere capping;	--	NP_563781.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	22	14	16	3
AT1G07220	no change	-0.1953519552173952	-0.1946163590506131	AT1G07220	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_172202.1 O-glucosyltransferase rumi-like protein (DUF821) [Arabidopsis thaliana]	107	87	58	53
AT1G07240	no change	-0.45334957614968935	-0.2146058438748606	AT1G07240	--	GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0009687,abscisic acid metabolic process; GO:0009819,drought recovery; GO:0010030,positive regulation of seed germination; GO:0010294,abscisic acid glucosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:1902265,abscisic acid homeostasis;	--	NP_172204.1 UDP-glucosyl transferase 71C5 [Arabidopsis thaliana]	60	35	22	30
AT1G07250	no change	0.536390031935665	-0.04836323552438915	AT1G07250	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_563784.2 UDP-glucosyl transferase 71C4 [Arabidopsis thaliana]	147	112	114	55
AT1G07725	no change	-0.2486769270056498	-0.7233896989617266	AT1G07725	--	GO:0000145,exocyst; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0006887,exocytosis; GO:0015031,protein transport; GO:0090406,pollen tube;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_683286.2 exocyst subunit exo70 family protein H6 [Arabidopsis thaliana]	22	9	6	6
AT1G07770	no change	-0.35719617472082066	0.9966360612046272	AT1G07770	--	GO:0000325,plant-type vacuole; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S15Ae, RPS15A; small subunit ribosomal protein S15Ae; K02957;	NP_001318947.1 ribosomal protein S15A [Arabidopsis thaliana]	524	465	729	576
AT1G08230	no change	-0.2510344684384086	0.9081706147126528	AT1G08230	--	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0015171,amino acid transmembrane transporter activity; GO:0015185,gamma-aminobutyric acid transmembrane transporter activity; GO:0015812,gamma-aminobutyric acid transport; GO:0016020,membrane;	--	NP_001320802.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	19	15	18	23
AT1G08260	no change	-0.9567776357342574	0.16304169817493896	AT1G08260	--	GO:0000166,nucleotide binding; GO:0000278,mitotic cell cycle; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003887,DNA-directed DNA polymerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006272,leading strand elongation; GO:0006281,DNA repair; GO:0006287,base-excision repair, gap-filling; GO:0006297,nucleotide-excision repair, DNA gap filling; GO:0008270,zinc ion binding; GO:0008310,single-stranded DNA 3'-5' exodeoxyribonuclease activity; GO:0008622,epsilon DNA polymerase complex; GO:0010086,embryonic root morphogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0045004,DNA replication proofreading; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0048579,negative regulation of long-day photoperiodism, flowering; GO:0051302,regulation of cell division; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0071897,DNA biosynthetic process; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0110165,cellular anatomical entity;	POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]; K02324;	NP_172303.5 DNA polymerase epsilon catalytic subunit [Arabidopsis thaliana]	119	94	108	53
AT1G08315	no change	0.03238517169441625	0.06117383073196564	AT1G08315	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm;	--	NP_849613.1 ARM repeat superfamily protein [Arabidopsis thaliana]	37	50	35	26
AT1G08400	no change	0.6476454600132898	0.5545370333466801	AT1G08400	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006890,retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030134,COPII-coated ER to Golgi transport vesicle; GO:0030142,COPI-coated Golgi to ER transport vesicle; GO:0060628,regulation of ER to Golgi vesicle-mediated transport; GO:0070939,Dsl1/NZR complex;	--	NP_172316.2 RINT-1 / TIP-1 family [Arabidopsis thaliana]	23	35	46	14
AT1G08550	no change	0.05275022721828295	-0.04642101468059549	AT1G08550	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005829,cytosol; GO:0006631,fatty acid metabolic process; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010028,xanthophyll cycle; GO:0015994,chlorophyll metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0046422,violaxanthin de-epoxidase activity;	VDE, NPQ1; violaxanthin de-epoxidase [EC:1.23.5.1]; K09839;	NP_001031000.1 non-photochemical quenching 1 [Arabidopsis thaliana]	147	186	117	98
AT1G08770	no change	0.40704769097093	0.18288784867462396	AT1G08770	--	GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	--	NP_563826.1 prenylated RAB acceptor 1.E [Arabidopsis thaliana]	70	45	61	27
AT1G08810	no change	-0.8244998167380078	-0.07880944761167029	AT1G08810	MYB_related	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009411,response to UV; GO:0009414,response to water deprivation; GO:0009416,response to light stimulus; GO:0009637,response to blue light; GO:0009646,response to absence of light; GO:0009733,response to auxin; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0010118,stomatal movement; GO:0080148,negative regulation of response to water deprivation; GO:1902074,response to salt;	--	NP_172358.1 myb domain protein 60 [Arabidopsis thaliana]	10	13	5	9
AT1G08940	no change	0.5961857531873294	0.1293341955165341	AT1G08940	--	GO:0003824,catalytic activity; GO:0016791,phosphatase activity;	--	NP_172369.1 Phosphoglycerate mutase family protein [Arabidopsis thaliana]	20	20	16	13
AT1G09270	no change	0.5594033865791509	-0.111786891743878	AT1G09270	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0006606,protein import into nucleus; GO:0006607,NLS-bearing protein import into nucleus; GO:0008139,nuclear localization sequence binding; GO:0015031,protein transport; GO:0030581,symbiont intracellular protein transport in host; GO:0043657,host cell; GO:0061608,nuclear import signal receptor activity; GO:0080034,host response to induction by symbiont of tumor, nodule or growth in host;	KPNA5_6; importin subunit alpha-6/7; K15042;	NP_172398.1 importin alpha isoform 4 [Arabidopsis thaliana]	430	399	257	246
AT1G09280	no change	-0.02190824274830507	0.1701636851264279	AT1G09280	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016787,hydrolase activity;	--	NP_563840.1 rhodanese-like domain protein [Arabidopsis thaliana]	32	36	34	18
AT1G09300	no change	0.8358428347139202	0.5162332088405612	AT1G09300	--	GO:0004177,aminopeptidase activity; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0016787,hydrolase activity; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0070006,metalloaminopeptidase activity;	--	NP_001117254.1 Metallopeptidase M24 family protein [Arabidopsis thaliana]	35	44	50	27
AT1G09310	no change	-0.00969590862218633	-0.15944243136328287	AT1G09310	--	GO:0005576,extracellular region; GO:0005770,late endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009737,response to abscisic acid; GO:0048046,apoplast;	--	NP_563841.1 plant/protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]	2147	1790	1425	927
AT1G09610	no change	0.9031042731760868	-0.31147385551920276	AT1G09610	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0008168,methyltransferase activity; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0030775,glucuronoxylan 4-O-methyltransferase activity; GO:0032259,methylation; GO:0045491,xylan metabolic process; GO:0045492,xylan biosynthetic process; GO:0071554,cell wall organization or biogenesis;	GXM; glucuronoxylan 4-O-methyltransferase [EC:2.1.1.112]; K18801;	NP_172432.1 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]	56	46	29	25
AT1G09750	no change	-0.580288748119992	-0.7505626470594824	AT1G09750	--	GO:0000166,nucleotide binding; GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009627,systemic acquired resistance; GO:0016787,hydrolase activity; GO:0043067,regulation of programmed cell death; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_563851.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	544	497	242	170
AT1G09760	no change	-0.38775346821847295	0.9109754335098867	AT1G09760	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0015030,Cajal body; GO:0030620,U2 snRNA binding; GO:1990904,ribonucleoprotein complex;	SNRPA1; U2 small nuclear ribonucleoprotein A'; K11092;	NP_172447.1 U2 small nuclear ribonucleoprotein A [Arabidopsis thaliana]	142	121	174	151
AT1G09770	no change	0.23305714384922308	0.7108172792547872	AT1G09770	MYB	GO:0000398,mRNA splicing, via spliceosome; GO:0000974,Prp19 complex; GO:0002376,immune system process; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006281,DNA repair; GO:0006355,regulation of DNA-templated transcription; GO:0006397,mRNA processing; GO:0006952,defense response; GO:0006974,cellular response to DNA damage stimulus; GO:0007049,cell cycle; GO:0008380,RNA splicing; GO:0042742,defense response to bacterium; GO:0045087,innate immune response; GO:0050832,defense response to fungus;	CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1; K12860;	NP_172448.1 cell division cycle 5 [Arabidopsis thaliana]	452	331	473	370
AT1G09910	no change	0.07947432135481927	-0.0809554864936199	AT1G09910	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0016829,lyase activity; GO:0030246,carbohydrate binding; GO:0102210,rhamnogalacturonan endolyase activity; GO:1901575,organic substance catabolic process;	RGL4, rhiE; rhamnogalacturonan endolyase [EC:4.2.2.23]; K18195;	NP_172462.2 Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]	105	116	77	62
AT1G10090	no change	-0.845397103209213	-0.209212074383816	AT1G10090	--	GO:0005227,calcium activated cation channel activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0098655,cation transmembrane transport;	--	NP_172480.2 Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]	72	90	38	53
AT1G10140	no change	0.3437619990022861	0.3526693654101691	AT1G10140	--	GO:0005575,cellular_component; GO:0071456,cellular response to hypoxia;	--	NP_563861.1 Uncharacterized conserved protein UCP031279 [Arabidopsis thaliana]	21	28	24	18
AT1G10490	no change	-0.2079433282402645	0.8437083008503066	AT1G10490	--	GO:0000049,tRNA binding; GO:0000154,rRNA modification; GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0008033,tRNA processing; GO:0008080,N-acetyltransferase activity; GO:0016072,rRNA metabolic process; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0034470,ncRNA processing; GO:0042274,ribosomal small subunit biogenesis; GO:0043412,macromolecule modification; GO:0044238,primary metabolic process; GO:0051391,tRNA acetylation; GO:1904812,rRNA acetylation involved in maturation of SSU-rRNA; GO:1990883,rRNA cytidine N-acetyltransferase activity;	NAT10, KRE33; N-acetyltransferase 10 [EC:2.3.1.-]; K14521;	NP_001318971.1 GNAT acetyltransferase (DUF699) [Arabidopsis thaliana]	232	193	279	224
AT1G10850	no change	0.833373857504797	-0.7622578824228693	AT1G10850	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001077512.4 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	79	96	50	21
AT1G11260	no change	0.583312856211699	0.6684986779591935	AT1G11260	--	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0009506,plasmodesma; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_172592.1 sugar transporter 1 [Arabidopsis thaliana]	683	586	732	598
AT1G11303	no change	-0.09878617016623675	-0.5897877339744484	AT1G11303	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0031625,ubiquitin protein ligase binding; GO:0048544,recognition of pollen; GO:0106310,protein serine kinase activity;	--	KAG7596651.1 Protein kinase domain [Arabidopsis suecica]	13	19	12	3
AT1G11310	no change	-0.4614518725457123	-0.06115578167439226	AT1G11310	--	GO:0005516,calmodulin binding; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009607,response to biotic stimulus; GO:0009620,response to fungus; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031348,negative regulation of defense response; GO:0050832,defense response to fungus;	--	NP_172598.1 Seven transmembrane MLO family protein [Arabidopsis thaliana]	471	341	273	236
AT1G11330	no change	0.07224063660331025	-0.5608221312367757	AT1G11330	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006955,immune response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0048544,recognition of pollen; GO:0106310,protein serine kinase activity;	--	NP_001320487.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]	170	149	80	63
AT1G11650	no change	-0.12434167067808728	-0.21634135921890452	AT1G11650	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008143,poly(A) binding; GO:0010193,response to ozone;	--	NP_172630.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	957	813	582	428
AT1G11750	no change	0.183114885882786	-0.23415033971004456	AT1G11750	--	GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0009368,endopeptidase Clp complex; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0051117,ATPase binding;	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358;	NP_563893.1 CLP protease proteolytic subunit 6 [Arabidopsis thaliana]	313	252	173	143
AT1G11755	no change	0.48414515289728505	-0.35380816270778775	AT1G11755	--	GO:0005783,endoplasmic reticulum; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0009414,response to water deprivation; GO:0009645,response to low light intensity stimulus; GO:0016020,membrane; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; GO:0019408,dolichol biosynthetic process; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0045547,dehydrodolichyl diphosphate synthase activity; GO:1904423,dehydrodolichyl diphosphate synthase complex;	DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87]; K11778;	NP_001077518.1 Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]	276	241	147	120
AT1G12020	no change	-0.065811400197505	0.9146708139136064	AT1G12020	--	GO:0005575,cellular_component;	--	NP_001318984.1 hypothetical protein AT1G12020 [Arabidopsis thaliana]	7	5	9	6
AT1G12060	no change	0.05753393641911594	-0.00449174755853871	AT1G12060	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005739,mitochondrion; GO:0006457,protein folding; GO:0051087,chaperone binding;	--	NP_172670.2 BCL-2-associated athanogene 5 [Arabidopsis thaliana]	23	20	14	14
AT1G12150	no change	-0.3853680339040445	0.01077469243282868	AT1G12150	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement;	--	OAP18398.1 hypothetical protein AXX17_AT1G12540 [Arabidopsis thaliana]	32	54	25	32
AT1G12320	no change	0.43338702890141545	0.1887706556339613	AT1G12320	--	GO:0003674,molecular_function;	--	NP_172696.1 ankyrin repeat/KH domain protein (DUF1442) [Arabidopsis thaliana]	23	28	28	12
AT1G12410	no change	-0.6034799147518896	-0.20375512430498857	AT1G12410	--	GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0009368,endopeptidase Clp complex; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0009941,chloroplast envelope; GO:0051117,ATPase binding;	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358;	NP_563907.1 CLP protease proteolytic subunit 2 [Arabidopsis thaliana]	256	251	152	138
AT1G12470	no change	-0.1610743854812745	0.4363545101162126	AT1G12470	--	GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006886,intracellular protein transport; GO:0006904,vesicle docking involved in exocytosis; GO:0007032,endosome organization; GO:0007033,vacuole organization; GO:0009705,plant-type vacuole membrane; GO:0010008,endosome membrane; GO:0010015,root morphogenesis; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030674,protein-macromolecule adaptor activity; GO:0030897,HOPS complex; GO:0033263,CORVET complex; GO:0046872,metal ion binding; GO:0048284,organelle fusion;	VPS18, PEP3; vacuolar protein sorting-associated protein 18; K20181;	NP_172709.2 zinc ion binding protein [Arabidopsis thaliana]	398	293	324	287
AT1G12550	no change	-0.9661629950352538	-0.9625755003961456	AT1G12550	--	GO:0005829,cytosol; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0051287,NAD binding;	HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]; K15919;	NP_172716.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	46	49	27	7
AT1G12810	no change	0.5738492264721103	0.13449525833590606	AT1G12810	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_563914.1 proline-rich family protein [Arabidopsis thaliana]	50	70	37	49
AT1G12820	no change	0.457192279763848	-0.02028799908261511	AT1G12820	--	GO:0000822,inositol hexakisphosphate binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0009734,auxin-activated signaling pathway; GO:0010011,auxin binding; GO:0010152,pollen maturation; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; GO:0048443,stamen development; GO:0048527,lateral root development; GO:0051716,cellular response to stimulus; GO:0071249,cellular response to nitrate; GO:0080022,primary root development;	--	NP_563915.1 auxin signaling F-box 3 [Arabidopsis thaliana]	154	120	105	74
AT1G12900	no change	-0.6407815184455672	-0.788051904109806	AT1G12900	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005576,extracellular region; GO:0006006,glucose metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:1901149,salicylic acid binding;	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298;	NP_001321059.1 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Arabidopsis thaliana]	2716	2425	1113	859
AT1G13170	no change	0.6539519421523072	-0.4289575763786472	AT1G13170	--	GO:0005829,cytosol; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0015248,sterol transporter activity; GO:0015918,sterol transport; GO:0016020,membrane; GO:0032934,sterol binding; GO:0043231,intracellular membrane-bounded organelle;	--	NP_001184980.1 OSBP(oxysterol binding protein)-related protein 1D [Arabidopsis thaliana]	88	68	52	26
AT1G13280	no change	-0.04835097249030509	-0.7665331403499711	AT1G13280	--	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009695,jasmonic acid biosynthetic process; GO:0016853,isomerase activity; GO:0046423,allene-oxide cyclase activity;	AOC; allene oxide cyclase [EC:5.3.99.6]; K10525;	NP_172786.1 allene oxide cyclase 4 [Arabidopsis thaliana]	539	461	173	207
AT1G13360	no change	-0.14399236680792346	0.3077412970700912	AT1G13360	--	GO:0071456,cellular response to hypoxia;	--	NP_001184983.1 hypothetical protein AT1G13360 [Arabidopsis thaliana]	231	206	237	128
AT1G13450	no change	-0.5300440865224495	0.4611852476931455	AT1G13450	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0042802,identical protein binding; GO:0043565,sequence-specific DNA binding;	--	NP_172802.2 Homeodomain-like superfamily protein [Arabidopsis thaliana]	19	32	30	18
AT1G13920	no change	0.04649538750977879	0.6963080473998723	AT1G13920	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:1901700,response to oxygen-containing compound;	--	NP_001321408.1 Remorin family protein [Arabidopsis thaliana]	10	3	10	4
AT1G13930	no change	0.179509761557866	-0.1993206788192338	AT1G13930	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009941,chloroplast envelope; GO:0010115,regulation of abscisic acid biosynthetic process;	--	NP_001184989.1 oleosin-B3-like protein [Arabidopsis thaliana]	9300	7367	5296	4256
AT1G14000	no change	0.8938884692639708	0.42670966501021634	AT1G14000	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004709,MAP kinase kinase kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0006468,protein phosphorylation; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010305,leaf vascular tissue pattern formation; GO:0010828,positive regulation of glucose transmembrane transport; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0071333,cellular response to glucose stimulus; GO:1902074,response to salt;	--	NP_172853.1 VH1-interacting kinase [Arabidopsis thaliana]	200	215	212	160
AT1G14010	no change	-0.25768086365836246	-0.7488100554068395	AT1G14010	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005793,endoplasmic reticulum-Golgi intermediate compartment; GO:0005794,Golgi apparatus; GO:0006886,intracellular protein transport; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0007030,Golgi organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030134,COPII-coated ER to Golgi transport vesicle; GO:0032580,Golgi cisterna membrane;	TMED10, ERV25; p24 family protein delta-1; K20352;	NP_172854.1 emp24/gp25L/p24 family/GOLD family protein [Arabidopsis thaliana]	274	226	86	106
AT1G14020	no change	8.27698175683028e-4	0.2649028914028305	AT1G14020	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0071555,cell wall organization;	--	NP_172855.2 O-fucosyltransferase family protein [Arabidopsis thaliana]	47	64	48	41
AT1G14150	no change	0.10229551384314454	-0.6912800497145926	AT1G14150	--	GO:0005509,calcium ion binding; GO:0009344,nitrite reductase complex [NAD(P)H]; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity;	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901;	NP_563937.1 PsbQ-like 2 [Arabidopsis thaliana]	56	42	17	22
AT1G14210	no change	0.4400234913882454	0.7993671212991595	AT1G14210	--	GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004521,endoribonuclease activity; GO:0005576,extracellular region; GO:0006401,RNA catabolic process; GO:0016070,RNA metabolic process; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0033897,ribonuclease T2 activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; GO:0099503,secretory vesicle;	--	NP_563940.1 Ribonuclease T2 family protein [Arabidopsis thaliana]	6	7	8	7
AT1G14280	no change	-0.26704768880394963	-0.01485572952880573	AT1G14280	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009585,red, far-red light phototransduction; GO:0009638,phototropism; GO:0010017,red or far-red light signaling pathway; GO:0016020,membrane; GO:0048366,leaf development;	--	NP_172880.1 phytochrome kinase substrate 2 [Arabidopsis thaliana]	203	202	159	109
AT1G14687	no change	0.8439017833822866	0.56284663772424115	AT1G14687	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding;	--	NP_563956.1 homeobox protein 32 [Arabidopsis thaliana]	27	12	19	18
AT1G14920	no change	-0.7671909574600672	-0.1489594750523267	AT1G14920	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006808,regulation of nitrogen utilization; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009938,negative regulation of gibberellic acid mediated signaling pathway; GO:0009939,positive regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010187,negative regulation of seed germination; GO:0010218,response to far red light; GO:0010233,phloem transport; GO:0010336,gibberellic acid homeostasis; GO:0010628,positive regulation of gene expression; GO:0010629,negative regulation of gene expression; GO:0033206,meiotic cytokinesis; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:1900033,negative regulation of trichome patterning; GO:1903508,positive regulation of nucleic acid-templated transcription; GO:1905614,negative regulation of developmental vegetative growth; GO:1905622,negative regulation of leaf development; GO:2000033,regulation of seed dormancy process; GO:2000377,regulation of reactive oxygen species metabolic process;	DELLA; DELLA protein; K14494;	NP_172945.1 GRAS family transcription factor family protein [Arabidopsis thaliana]	182	155	108	92
AT1G15000	no change	0.7399717754811903	-0.38966074777348186	AT1G15000	--	GO:0000325,plant-type vacuole; GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_172953.1 serine carboxypeptidase-like 50 [Arabidopsis thaliana]	45	30	18	19
AT1G15100	no change	-0.7127175931074338	-0.04418336777540149	AT1G15100	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0047484,regulation of response to osmotic stress; GO:0061630,ubiquitin protein ligase activity;	--	NP_172962.1 RING-H2 finger A2A [Arabidopsis thaliana]	36	24	10	26
AT1G15170	no change	-0.4369503658801987	-0.13997039222736457	AT1G15170	--	GO:0009507,chloroplast; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_172969.1 MATE efflux family protein [Arabidopsis thaliana]	41	31	24	19
AT1G15190	no change	0.6700899236321566	-0.7164234149198935	AT1G15190	--	GO:0005576,extracellular region;	--	NP_172971.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	11	7	3	4
AT1G15390	no change	0.4085472181384955	0.6774115093024093	AT1G15390	--	GO:0005739,mitochondrion; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0018206,peptidyl-methionine modification; GO:0031365,N-terminal protein amino acid modification; GO:0042586,peptide deformylase activity; GO:0043686,co-translational protein modification; GO:0046872,metal ion binding;	PDF, def; peptide deformylase [EC:3.5.1.88]; K01462;	NP_563974.1 peptide deformylase 1A [Arabidopsis thaliana]	53	40	50	47
AT1G15410	no change	-0.13212708342922022	0.3902039394501583	AT1G15410	--	GO:0006807,nitrogen compound metabolic process; GO:0009507,chloroplast; GO:0016855,racemase and epimerase activity, acting on amino acids and derivatives; GO:0036361,racemase activity, acting on amino acids and derivatives; GO:0047661,amino-acid racemase activity;	--	NP_001320372.1 aspartate-glutamate racemase family [Arabidopsis thaliana]	15	16	15	12
AT1G15720	no change	0.613181924297738	-0.5402908402542248	AT1G15720	MYB_related	--	--	NP_173024.1 TRF-like 5 [Arabidopsis thaliana]	41	35	22	13
AT1G15750	no change	0.7439845661681221	-0.21359784929526032	AT1G15750	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009791,post-embryonic development; GO:0009867,jasmonic acid mediated signaling pathway; GO:0010051,xylem and phloem pattern formation; GO:0010072,primary shoot apical meristem specification; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0048367,shoot system development; GO:0048608,reproductive structure development;	--	NP_001031050.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	767	510	431	296
AT1G15780	no change	-0.892232932559491	0.10836218485277532	AT1G15780	--	GO:0003712,transcription coregulator activity; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009751,response to salicylic acid; GO:0016592,mediator complex; GO:0031490,chromatin DNA binding; GO:0045723,positive regulation of fatty acid biosynthetic process; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_173030.1 mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]	243	222	181	150
AT1G15810	no change	-0.15467322364300717	-0.02107540148741544	AT1G15810	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0043229,intracellular organelle; GO:1990904,ribonucleoprotein complex;	--	NP_563982.1 S15/NS1, RNA-binding protein [Arabidopsis thaliana]	192	176	139	102
AT1G15820	no change	0.31059033649732304	-0.2943933720146504	AT1G15820	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009783,photosystem II antenna complex; GO:0009941,chloroplast envelope; GO:0010196,nonphotochemical quenching; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding;	LHCB6; light-harvesting complex II chlorophyll a/b binding protein 6; K08917;	NP_173034.1 light harvesting complex photosystem II subunit 6 [Arabidopsis thaliana]	5997	5448	3329	2822
AT1G16070	no change	-0.1716778600488379	-0.4553495249851462	AT1G16070	--	GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0009620,response to fungus;	TULP1; tubby-related protein 1; K19600;	NP_173059.1 tubby like protein 8 [Arabidopsis thaliana]	22	26	11	12
AT1G16280	no change	0.30783909121598046	0.06212034719319628	AT1G16280	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0009553,embryo sac development; GO:0009561,megagametogenesis; GO:0009791,post-embryonic development; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0090406,pollen tube;	--	NP_173078.1 RNA helicase 36 [Arabidopsis thaliana]	44	56	40	30
AT1G16560	no change	0.2031739348852993	-0.23691083059298385	AT1G16560	--	GO:0000139,Golgi membrane; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0006506,GPI anchor biosynthetic process; GO:0016020,membrane; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_001319020.1 Per1-like family protein [Arabidopsis thaliana]	228	202	144	99
AT1G16570	no change	-0.05145654152716634	0.47167900925437944	AT1G16570	--	GO:0000030,mannosyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0010483,pollen tube reception; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0048868,pollen tube development; GO:0097502,mannosylation;	ALG1; beta-1,4-mannosyltransferase [EC:2.4.1.142]; K03842;	NP_173105.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	77	62	81	48
AT1G16800	no change	0.7415521569870493	-0.3209546414269702	AT1G16800	--	GO:0003723,RNA binding; GO:0004386,helicase activity; GO:0008266,poly(U) RNA binding; GO:0016787,hydrolase activity;	--	NP_001322185.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	75	63	52	23
AT1G16890	no change	-0.602881604697766	0.5363721638263266	AT1G16890	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006301,postreplication repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010039,response to iron ion; GO:0010053,root epidermal cell differentiation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031372,UBC13-MMS2 complex; GO:0061631,ubiquitin conjugating enzyme activity; GO:0070534,protein K63-linked ubiquitination;	UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]; K10580;	NP_001185017.1 ubiquitin-conjugating enzyme 36 [Arabidopsis thaliana]	1739	1541	1710	1426
AT1G17070	no change	0.02705233629885265	0.28627156085606664	AT1G17070	--	GO:0000390,spliceosomal complex disassembly; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0008380,RNA splicing; GO:0031981,nuclear lumen; GO:0042752,regulation of circadian rhythm; GO:0043170,macromolecule metabolic process; GO:0044238,primary metabolic process; GO:0071008,U2-type post-mRNA release spliceosomal complex; GO:1990446,U1 snRNP binding;	--	NP_173150.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]	92	58	63	56
AT1G17130	no change	0.0514660125447382	0.20303826799249047	AT1G17130	--	GO:0000349,generation of catalytic spliceosome for first transesterification step; GO:0000398,mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046872,metal ion binding; GO:0071006,U2-type catalytic step 1 spliceosome;	--	NP_001077550.1 coiled-coil protein (DUF572) [Arabidopsis thaliana]	110	102	87	74
AT1G17140	no change	0.675627051069536	-0.13727881587204924	AT1G17140	--	GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0090404,pollen tube tip; GO:2000012,regulation of auxin polar transport;	--	NP_564015.1 interactor of constitutive active rops 1 [Arabidopsis thaliana]	219	193	140	108
AT1G17620	no change	0.0730389725522147	0.08426786216660968	AT1G17620	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane;	--	KAG7654648.1 Late embryogenesis abundant protein LEA_2 subgroup [Arabidopsis suecica]	178	157	148	90
AT1G17840	no change	-0.12647958886513333	-0.06786468807501897	AT1G17840	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0009611,response to wounding; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009897,external side of plasma membrane; GO:0010222,stem vascular tissue pattern formation; GO:0010345,suberin biosynthetic process; GO:0010588,cotyledon vascular tissue pattern formation; GO:0015245,fatty acid transmembrane transporter activity; GO:0015562,efflux transmembrane transporter activity; GO:0015908,fatty acid transport; GO:0016020,membrane; GO:0042335,cuticle development; GO:0042803,protein homodimerization activity; GO:0055085,transmembrane transport; GO:0080051,cutin transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_173226.2 white-brown complex-like protein [Arabidopsis thaliana]	1936	1905	1369	1065
AT1G17850	no change	-0.6067718677359601	-0.9163756269376782	AT1G17850	--	GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_001185025.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]	22	16	6	7
AT1G17970	no change	0.8870093460786247	0.3777214118666623	AT1G17970	--	GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_173239.1 RING/U-box superfamily protein [Arabidopsis thaliana]	21	23	21	17
AT1G18030	no change	0.8482930342799684	-0.21931549516500232	AT1G18030	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding;	--	NP_001077557.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	18	8	11	4
AT1G18420	no change	-0.6152911821745182	-0.05908493636339051	AT1G18420	--	GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009705,plant-type vacuole membrane; GO:0015743,malate transport; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0035618,root hair; GO:0071423,malate transmembrane transport; GO:0098656,anion transmembrane transport;	--	NP_173278.1 aluminum activated malate transporter family protein [Arabidopsis thaliana]	37	29	14	26
AT1G18470	no change	0.5196671735175845	0.344330124415601	AT1G18470	--	GO:0005783,endoplasmic reticulum; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane;	--	NP_564052.1 Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]	124	132	120	96
AT1G18630	no change	0.25651183884849216	-0.23529385439717396	AT1G18630	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0009651,response to salt stress;	--	NP_173298.1 glycine-rich RNA-binding protein 6 [Arabidopsis thaliana]	40	39	22	22
AT1G18650	no change	-0.7114683563446843	-0.639979274187061	AT1G18650	--	GO:0001872,(1->3)-beta-D-glucan binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0070161,anchoring junction;	--	NP_564059.1 plasmodesmata callose-binding protein 3 [Arabidopsis thaliana]	89	92	42	35
AT1G18880	no change	0.17752046071859848	0.5014309373295955	AT1G18880	--	GO:0005886,plasma membrane; GO:0010233,phloem transport; GO:0015112,nitrate transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090408,phloem nitrate loading;	--	NP_173322.1 Major facilitator superfamily protein [Arabidopsis thaliana]	43	42	30	47
AT1G18890	no change	0.573237940683992	-0.35648581830893256	AT1G18890	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_564066.2 calcium-dependent protein kinase 1 [Arabidopsis thaliana]	86	83	57	32
AT1G18900	no change	-0.35053700521583314	0.10835151812758942	AT1G18900	--	GO:0005515,protein binding;	--	NP_001319039.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	59	72	51	43
AT1G19120	no change	-0.09858165301305452	0.30993206368750087	AT1G19120	--	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000339,RNA cap binding; GO:0000932,P-body; GO:0000956,nuclear-transcribed mRNA catabolic process; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0009414,response to water deprivation; GO:0009631,cold acclimation; GO:0016070,RNA metabolic process; GO:0042538,hyperosmotic salinity response; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex;	LSM1; U6 snRNA-associated Sm-like protein LSm1; K12620;	NP_564072.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	45	71	50	46
AT1G19130	no change	0.5754852651192285	0.2927973989791172	AT1G19130	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0008150,biological_process;	K09705; uncharacterized protein; K09705;	NP_564073.4 RmlC-like jelly roll fold protein [Arabidopsis thaliana]	319	298	271	228
AT1G19230	no change	-0.0924502416039194	-0.41207964607975256	AT1G19230	--	GO:0000293,ferric-chelate reductase activity; GO:0004601,peroxidase activity; GO:0005509,calcium ion binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016174,NAD(P)H oxidase H2O2-forming activity; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0050664,oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor; GO:0098869,cellular oxidant detoxification;	RBOH; respiratory burst oxidase [EC:1.6.3.- 1.11.1.-]; K13447;	NP_001319042.1 Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]	31	28	9	19
AT1G19300	no change	-0.73462100856396	-0.434709225428196	AT1G19300	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0010051,xylem and phloem pattern formation; GO:0010417,glucuronoxylan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0032504,multicellular organism reproduction; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0048366,leaf development; GO:0052386,cell wall thickening; GO:0071555,cell wall organization;	--	NP_564077.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	142	151	85	60
AT1G19350	no change	0.05950414249783278	0.4058726827322032	AT1G19350	BES1	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009650,UV protection; GO:0009742,brassinosteroid mediated signaling pathway; GO:0042742,defense response to bacterium; GO:0045892,negative regulation of DNA-templated transcription; GO:0071367,cellular response to brassinosteroid stimulus; GO:1904961,quiescent center organization;	BZR1_2; brassinosteroid resistant 1/2; K14503;	NP_001077562.1 Brassinosteroid signaling positive regulator (BZR1) family protein [Arabidopsis thaliana]	119	79	122	55
AT1G19540	no change	-0.03674085726118725	0.0648686527303416	AT1G19540	--	GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_001320975.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	20	24	24	8
AT1G19630	no change	-0.31302247132865074	-0.6225553330419213	AT1G19630	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0010268,brassinosteroid homeostasis; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_173393.5 cytochrome P450, family 722, subfamily A, polypeptide 1 [Arabidopsis thaliana]	36	21	7	16
AT1G19680	no change	-0.02603449991723036	0.05840777784460863	AT1G19680	--	GO:0003674,molecular_function;	--	NP_173398.2 RING/U-box superfamily protein [Arabidopsis thaliana]	34	33	19	26
AT1G19690	no change	-0.3511604925451301	0.15642080017255505	AT1G19690	--	GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_564095.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	16	12	14	7
AT1G19710	no change	-0.3755572136591336	-0.3431279796529452	AT1G19710	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_173401.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	26	26	14	13
AT1G19715	no change	0.0388825289826152	0.13775013384380946	AT1G19715	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0030246,carbohydrate binding;	--	NP_849691.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	7	13	9	6
AT1G19920	no change	0.31759765293823733	0.39840668375031846	AT1G19920	--	GO:0000103,sulfate assimilation; GO:0000166,nucleotide binding; GO:0004020,adenylylsulfate kinase activity; GO:0004781,sulfate adenylyltransferase (ATP) activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009970,cellular response to sulfate starvation; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0070814,hydrogen sulfide biosynthetic process;	PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25]; K13811;	NP_564099.1 Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]	274	239	281	172
AT1G20010	no change	0.2015886009823549	-0.26732333572040157	AT1G20010	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005200,structural constituent of cytoskeleton; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0009505,plant-type cell wall; GO:0009570,chloroplast stroma; GO:0045298,tubulin complex; GO:0046872,metal ion binding;	TUBB; tubulin beta; K07375;	KAG7592342.1 Tubulin/FtsZ C-terminal [Arabidopsis thaliana x Arabidopsis arenosa]	3736	2637	1896	1569
AT1G20330	no change	0.6736995197154264	-0.4790106168466867	AT1G20330	--	GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0007389,pattern specification process; GO:0008168,methyltransferase activity; GO:0008202,steroid metabolic process; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009825,multidimensional cell growth; GO:0010051,xylem and phloem pattern formation; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0030797,24-methylenesterol C-methyltransferase activity; GO:0032259,methylation; GO:0032876,negative regulation of DNA endoreduplication; GO:0071704,organic substance metabolic process;	E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143]; K08242;	NP_173458.1 sterol methyltransferase 2 [Arabidopsis thaliana]	2490	2170	1156	1038
AT1G20440	no change	-0.1818328501312877	-0.5021106411272422	AT1G20440	--	GO:0003674,molecular_function; GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006970,response to osmotic stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0010286,heat acclimation; GO:0016020,membrane; GO:0016151,nickel cation binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus;	--	NP_173468.1 cold-regulated 47 [Arabidopsis thaliana]	3558	3133	1845	1299
AT1G20450	no change	0.5125194955499139	-0.5300866057505146	AT1G20450	--	GO:0001786,phosphatidylserine binding; GO:0003779,actin binding; GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009506,plasmodesma; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0009992,cellular water homeostasis; GO:0010029,regulation of seed germination; GO:0015629,actin cytoskeleton; GO:0016020,membrane; GO:0016151,nickel cation binding; GO:0019898,extrinsic component of membrane; GO:0031210,phosphatidylcholine binding; GO:0044183,protein folding chaperone; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0090559,regulation of membrane permeability;	--	NP_850947.1 Dehydrin family protein [Arabidopsis thaliana]	2257	1752	1072	766
AT1G20550	no change	-0.29382342567446446	-0.24041193875933148	AT1G20550	--	GO:0005575,cellular_component; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_173479.3 O-fucosyltransferase family protein [Arabidopsis thaliana]	18	19	18	4
AT1G20620	no change	0.36737190780717793	0.35956187229714714	AT1G20620	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004096,catalase activity; GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006979,response to oxidative stress; GO:0006995,cellular response to nitrogen starvation; GO:0007623,circadian rhythm; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009416,response to light stimulus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009617,response to bacterium; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0009970,cellular response to sulfate starvation; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0022626,cytosolic ribosome; GO:0035605,peptidyl-cysteine S-nitrosylase activity; GO:0035606,peptidyl-cysteine S-trans-nitrosylation; GO:0042542,response to hydrogen peroxide; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0050897,cobalt ion binding; GO:0051716,cellular response to stimulus; GO:0098869,cellular oxidant detoxification; GO:1902074,response to salt;	katE, CAT, catB, srpA; catalase [EC:1.11.1.6]; K03781;	NP_564120.1 catalase 3 [Arabidopsis thaliana]	4874	4324	4410	3405
AT1G20650	no change	-0.2565308667085919	-0.06693410641327005	AT1G20650	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173489.2 Protein kinase superfamily protein [Arabidopsis thaliana]	89	103	88	38
AT1G20830	no change	0.6059697177953927	0.11190447283693392	AT1G20830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0031972,chloroplast intermembrane space;	--	NP_173507.1 multiple chloroplast division site 1 [Arabidopsis thaliana]	41	47	44	21
AT1G20920	no change	-0.7571413617827831	-0.7976132794654721	AT1G20920	--	GO:0000166,nucleotide binding; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13]; K12811;	NP_001322011.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	86	83	50	17
AT1G21170	no change	-0.32152625280425806	0.3652362727115604	AT1G21170	--	GO:0000145,exocyst; GO:0003674,molecular_function; GO:0006887,exocytosis; GO:0006893,Golgi to plasma membrane transport; GO:0015031,protein transport; GO:0060321,acceptance of pollen;	EXOC2, SEC5; exocyst complex component 2; K17637;	NP_173541.1 Exocyst complex component SEC5 [Arabidopsis thaliana]	83	79	81	58
AT1G21270	no change	0.7271411505397385	0.5105751239988126	AT1G21270	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005509,calcium ion binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0009311,oligosaccharide metabolic process; GO:0009751,response to salicylic acid; GO:0009826,unidimensional cell growth; GO:0009992,cellular water homeostasis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding; GO:0106310,protein serine kinase activity;	--	NP_173549.1 wall-associated kinase 2 [Arabidopsis thaliana]	20	17	10	23
AT1G21600	no change	-0.7404242770023451	-0.1765187463928947	AT1G21600	--	GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0005515,protein binding; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042644,chloroplast nucleoid; GO:0042793,plastid transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_001031076.1 plastid transcriptionally active 6 [Arabidopsis thaliana]	259	244	176	121
AT1G21650	no change	-0.11249486396058768	0.5215762249590504	AT1G21650	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0015462,ABC-type protein transporter activity; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0017038,protein import; GO:0031969,chloroplast membrane; GO:0071806,protein transmembrane transport;	secA; preprotein translocase subunit SecA [EC:7.4.2.8]; K03070;	NP_173584.5 Preprotein translocase SecA family protein [Arabidopsis thaliana]	55	48	56	42
AT1G21680	no change	-0.5640879996958094	-0.24864426976549023	AT1G21680	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0099503,secretory vesicle;	--	NP_564147.1 DPP6 N-terminal domain-like protein [Arabidopsis thaliana]	358	319	211	166
AT1G21760	no change	0.8822095828972935	0.17613399984772335	AT1G21760	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006417,regulation of translation; GO:0009408,response to heat; GO:0009409,response to cold; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; GO:0090406,pollen tube;	--	NP_564150.1 F-box protein 7 [Arabidopsis thaliana]	64	55	25	59
AT1G21770	no change	-0.17884024590806408	0.29399977493882967	AT1G21770	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol;	K06975; uncharacterized protein; K06975;	NP_564151.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	149	165	177	86
AT1G21780	no change	0.39133499184808584	0.6999406158277027	AT1G21780	--	GO:0005515,protein binding; GO:0016567,protein ubiquitination;	SPOP; speckle-type POZ protein; K10523;	NP_001077574.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]	119	93	153	79
AT1G22030	no change	0.35411751641528244	-0.20098702177851993	AT1G22030	--	GO:0005575,cellular_component;	--	NP_564155.1 BPS1-like protein [Arabidopsis thaliana]	28	36	14	22
AT1G22330	no change	-0.3748351499197952	0.17733371097546527	AT1G22330	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0030154,cell differentiation;	--	NP_564168.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	24	14	10	17
AT1G22360	no change	0.4175690325795355	0.698945456154461	AT1G22360	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173653.1 UDP-glucosyl transferase 85A2 [Arabidopsis thaliana]	37	32	36	37
AT1G22370	no change	0.38108984092448095	0.4114340597728689	AT1G22370	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_973885.1 UDP-glucosyl transferase 85A5 [Arabidopsis thaliana]	11	8	6	10
AT1G22380	no change	-0.4756940784333094	-0.6970552816088432	AT1G22380	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173655.2 UDP-glucosyl transferase 85A3 [Arabidopsis thaliana]	350	307	150	118
AT1G22510	no change	0.2886539875105455	-0.5920596135087736	AT1G22510	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_001185064.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]	24	21	18	3
AT1G22620	no change	0.21281837470377385	0.06779177750353997	AT1G22620	--	GO:0004438,phosphatidylinositol-3-phosphatase activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0007010,cytoskeleton organization; GO:0009826,unidimensional cell growth; GO:0009832,plant-type cell wall biogenesis; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0036092,phosphatidylinositol-3-phosphate biosynthetic process; GO:0043231,intracellular membrane-bounded organelle; GO:0043813,phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity; GO:0046856,phosphatidylinositol dephosphorylation;	FIG4; phosphatidylinositol 3,5-bisphosphate 5-phosphatase [EC:3.1.3.-]; K22913;	NP_173676.2 Phosphoinositide phosphatase family protein [Arabidopsis thaliana]	177	155	139	93
AT1G22880	no change	0.6140606003726495	0.7485629695331826	AT1G22880	--	GO:0000272,polysaccharide catabolic process; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008810,cellulase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030245,cellulose catabolic process; GO:0071555,cell wall organization;	E3.2.1.4; endoglucanase [EC:3.2.1.4]; K01179;	NP_001031082.1 cellulase 5 [Arabidopsis thaliana]	6	5	11	2
AT1G23010	no change	-0.25950114820553793	0.25037437089083436	AT1G23010	--	GO:0005507,copper ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0010073,meristem maintenance; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016491,oxidoreductase activity; GO:0016682,oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor; GO:0046872,metal ion binding;	--	NP_173714.2 Cupredoxin superfamily protein [Arabidopsis thaliana]	220	193	172	151
AT1G23090	no change	-0.12901061604307248	0.44716110145163457	AT1G23090	--	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_173722.1 sulfate transporter 91 [Arabidopsis thaliana]	103	101	90	92
AT1G23310	no change	-0.8605152158603	-0.34893111710964825	AT1G23310	--	GO:0000325,plant-type vacuole; GO:0001666,response to hypoxia; GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004021,L-alanine:2-oxoglutarate aminotransferase activity; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006545,glycine biosynthetic process; GO:0008453,alanine-glyoxylate transaminase activity; GO:0008483,transaminase activity; GO:0009058,biosynthetic process; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding; GO:0042853,L-alanine catabolic process; GO:0047958,glycine:2-oxoglutarate aminotransferase activity; GO:0048046,apoplast;	GGAT; glutamate--glyoxylate aminotransferase [EC:2.6.1.4 2.6.1.2 2.6.1.44]; K14272;	NP_564192.2 glutamate:glyoxylate aminotransferase [Arabidopsis thaliana]	803	806	490	353
AT1G23390	no change	-0.26371380177982784	-0.7796195043604307	AT1G23390	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process;	--	NP_564193.1 Kelch repeat-containing F-box family protein [Arabidopsis thaliana]	106	121	54	35
AT1G23730	no change	-0.38567161530371347	-0.34185631427692315	AT1G23730	--	GO:0004089,carbonate dehydratase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0015976,carbon utilization; GO:0016829,lyase activity;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_001321762.1 beta carbonic anhydrase 3 [Arabidopsis thaliana]	111	129	58	66
AT1G24040	no change	0.0034839020162798	0.21892803351424475	AT1G24040	--	GO:0005515,protein binding; GO:0008080,N-acetyltransferase activity; GO:0009507,chloroplast; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity;	--	NP_001321714.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	41	35	25	32
AT1G24340	no change	0.21351489276608307	0.09856603616155232	AT1G24340	--	GO:0005739,mitochondrion; GO:0006744,ubiquinone biosynthetic process; GO:0043719,2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase activity; GO:0071949,FAD binding;	--	NP_173844.2 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	73	44	57	27
AT1G24350	no change	0.5907709768521455	0.49337467427535314	AT1G24350	--	GO:0003674,molecular_function; GO:0016020,membrane;	K09775; uncharacterized protein; K09775;	NP_564215.1 Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Arabidopsis thaliana]	9	25	25	9
AT1G25440	no change	-0.920631224173588	0.18149699575380415	AT1G25440	CO-like	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_173915.2 B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]	430	453	347	314
AT1G26090	no change	0.638111628528291	-0.6037011940268465	AT1G26090	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule;	--	NP_173934.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	47	35	17	18
AT1G26100	no change	-0.8167898629159805	-0.0878950309840335	AT1G26100	--	GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0055085,transmembrane transport; GO:0140571,transmembrane ascorbate ferrireductase activity;	--	NP_173935.1 Cytochrome b561/ferric reductase transmembrane protein family [Arabidopsis thaliana]	36	37	38	10
AT1G26120	no change	-0.5983308750327186	0.9708374758480216	AT1G26120	--	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0010296,prenylcysteine methylesterase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	PCME; prenylcysteine alpha-carboxyl methylesterase [EC:3.1.1.-]; K15889;	NP_173937.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	195	150	227	214
AT1G26220	no change	-0.7149751471594736	-0.05149731406064534	AT1G26220	--	GO:0005737,cytoplasm; GO:0008080,N-acetyltransferase activity; GO:0009507,chloroplast; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0043231,intracellular membrane-bounded organelle;	SNAT; aralkylamine N-acetyltransferase [EC:2.3.1.87]; K22450;	NP_173946.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	16	18	13	9
AT1G26300	no change	-0.5187152657529701	0.14050876278061172	AT1G26300	--	GO:0005575,cellular_component;	--	NP_173954.2 BSD domain-containing protein [Arabidopsis thaliana]	114	58	52	68
AT1G26800	no change	0.4170913032093607	-0.2315000243478475	AT1G26800	--	GO:0000209,protein polyubiquitination; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051787,misfolded protein binding; GO:0051865,protein autoubiquitination; GO:0061630,ubiquitin protein ligase activity; GO:0061635,regulation of protein complex stability; GO:0071218,cellular response to misfolded protein; GO:0071456,cellular response to hypoxia; GO:0071629,cytoplasm protein quality control by the ubiquitin-proteasome system;	--	NP_564263.1 RING/U-box superfamily protein [Arabidopsis thaliana]	10	25	15	6
AT1G27070	no change	0.8643406808582215	-0.5365284837940639	AT1G27070	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010581,regulation of starch biosynthetic process; GO:0019252,starch biosynthetic process; GO:0030247,polysaccharide binding; GO:2001071,maltoheptaose binding;	--	NP_174027.3 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]	13	21	10	6
AT1G27100	no change	0.41008112765477295	0.3041563212906046	AT1G27100	--	GO:0000325,plant-type vacuole;	--	NP_174030.2 Actin cross-linking protein [Arabidopsis thaliana]	158	112	112	105
AT1G27300	no change	0.6695803110004009	-0.3970949907721099	AT1G27300	--	GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane;	--	NP_564275.1 transmembrane protein [Arabidopsis thaliana]	96	88	38	52
AT1G27310	no change	0.9227990665763806	0.4476675095039171	AT1G27310	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0015031,protein transport; GO:0031267,small GTPase binding; GO:0044613,nuclear pore central transport channel; GO:0051028,mRNA transport;	--	NP_174051.1 nuclear transport factor 2A [Arabidopsis thaliana]	206	168	196	142
AT1G27350	no change	0.5363724334462519	0.03628583946263836	AT1G27350	--	GO:0005783,endoplasmic reticulum; GO:0006486,protein glycosylation; GO:0006979,response to oxidative stress; GO:0015031,protein transport; GO:0016020,membrane; GO:0030968,endoplasmic reticulum unfolded protein response;	--	NP_564277.1 Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana]	67	32	32	33
AT1G27370	no change	-0.3577070591303246	-0.18679305818344177	AT1G27370	SBP	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010358,leaf shaping; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0090356,negative regulation of auxin metabolic process;	--	NP_001031096.2 squamosa promoter binding protein-like 10 [Arabidopsis thaliana]	112	86	72	44
AT1G27600	no change	0.24003002959679792	0.19727937499098228	AT1G27600	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0009834,plant-type secondary cell wall biogenesis; GO:0010417,glucuronoxylan biosynthetic process; GO:0010584,pollen exine formation; GO:0015018,galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042285,xylosyltransferase activity; GO:0045492,xylan biosynthetic process; GO:0071555,cell wall organization;	--	NP_564290.2 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	106	126	107	72
AT1G27700	no change	0.04179270802652986	0.11574055481496193	AT1G27700	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005634,nucleus; GO:0006886,intracellular protein transport; GO:0006906,vesicle fusion; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0048193,Golgi vesicle transport; GO:0048278,vesicle docking; GO:0110165,cellular anatomical entity;	--	NP_564292.1 Syntaxin/t-SNARE family protein [Arabidopsis thaliana]	76	73	65	43
AT1G27920	no change	-0.6108159641089561	-0.19955113674448943	AT1G27920	--	GO:0000226,microtubule cytoskeleton organization; GO:0000922,spindle pole; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0051301,cell division;	--	NP_174113.2 microtubule-associated protein 65-8 [Arabidopsis thaliana]	22	17	16	7
AT1G27960	no change	0.3906109088369617	0.6143989085416915	AT1G27960	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_174117.2 evolutionarily conserved C-terminal region 9 [Arabidopsis thaliana]	135	106	156	91
AT1G28100	no change	-0.2089845620889967	0.3184440948829305	AT1G28100	--	GO:0016123,xanthophyll biosynthetic process;	--	NP_001320339.1 hypothetical protein AT1G28100 [Arabidopsis thaliana]	17	10	7	14
AT1G28110	no change	0.13569837870952484	0.367984918661225	AT1G28110	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016787,hydrolase activity;	--	NP_564298.1 serine carboxypeptidase-like 45 [Arabidopsis thaliana]	88	82	69	74
AT1G28390	no change	0.0702241238485965	0.1150019583231025	AT1G28390	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0106310,protein serine kinase activity;	--	NP_001185106.1 Protein kinase superfamily protein [Arabidopsis thaliana]	60	28	20	39
AT1G28420	no change	-0.35271919506107163	0.25166426784190193	AT1G28420	HB-other	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0031010,ISWI-type complex; GO:0043229,intracellular organelle; GO:0045892,negative regulation of DNA-templated transcription; GO:0048510,regulation of timing of transition from vegetative to reproductive phase;	--	NP_174164.2 homeobox-1 [Arabidopsis thaliana]	105	126	89	92
AT1G28550	no change	0.6815701093283689	-0.3701224912063989	AT1G28550	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis;	--	NP_174177.1 RAB GTPase homolog A1I [Arabidopsis thaliana]	27	7	5	11
AT1G28680	no change	-0.1305844360008072	-0.2586348155451815	AT1G28680	--	GO:0009805,coumarin biosynthetic process; GO:0016410,N-acyltransferase activity; GO:0016740,transferase activity;	--	NP_174189.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	109	112	70	53
AT1G29790	no change	-0.18688850090544	-0.17472587642971285	AT1G29790	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_001117383.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	188	144	94	97
AT1G29800	no change	0.10533011646281903	0.10095870105402542	AT1G29800	--	GO:0035091,phosphatidylinositol binding; GO:0046872,metal ion binding;	--	NP_174273.3 RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]	145	118	93	91
AT1G29850	no change	0.30412159904013863	0.24356815370475365	AT1G29850	--	GO:0003677,DNA binding; GO:0003684,damaged DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006281,DNA repair; GO:0008150,biological_process; GO:0012501,programmed cell death;	PDCD5, TFAR19; programmed cell death protein 5; K06875;	NP_564336.1 double-stranded DNA-binding family protein [Arabidopsis thaliana]	94	136	103	80
AT1G29920	no change	-0.4774145081190525	-0.17846639475608975	AT1G29920	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009750,response to fructose; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; GO:0048046,apoplast;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_564339.1 chlorophyll A/B binding protein 3 [Arabidopsis thaliana]	1374	801	738	523
AT1G29930	no change	-0.60449702691064	-0.17075819900535694	AT1G29930	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_174286.1 chlorophyll A/B binding protein 1 [Arabidopsis thaliana]	4628	4645	3266	2250
AT1G29940	no change	-0.2524563370408089	0.8892436094280718	AT1G29940	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0009561,megagametogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0032549,ribonucleoside binding; GO:0042254,ribosome biogenesis; GO:0046872,metal ion binding;	RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]; K03002;	NP_564341.2 nuclear RNA polymerase A2 [Arabidopsis thaliana]	198	199	322	176
AT1G30020	no change	0.6607377993088219	-0.6243195991034367	AT1G30020	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_174295.1 hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]	97	74	35	37
AT1G30400	no change	-0.06866215758883956	-0.1296307552238854	AT1G30400	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0015446,ATPase-coupled arsenite transmembrane transporter activity; GO:0015700,arsenite transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0044604,ABC-type phytochelatin transporter activity; GO:0046685,response to arsenic-containing substance; GO:0055085,transmembrane transport; GO:0061687,detoxification of inorganic compound; GO:0071722,detoxification of arsenic-containing substance; GO:0071994,phytochelatin transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1902417,(+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity; GO:1902418,(+)-abscisic acid D-glucopyranosyl ester transmembrane transport;	--	NP_001031116.1 multidrug resistance-associated protein 1 [Arabidopsis thaliana]	688	575	467	303
AT1G30590	no change	0.8540004798001227	0.796455828228736	AT1G30590	--	GO:0001042,RNA polymerase I core binding; GO:0001181,RNA polymerase I general transcription initiation factor activity; GO:0003743,translation initiation factor activity; GO:0005634,nucleus; GO:0006361,transcription initiation at RNA polymerase I promoter; GO:0006413,translational initiation;	--	NP_001320918.1 RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]	74	94	129	70
AT1G31150	no change	-0.35053700521583314	0.4362365031807583	AT1G31150	--	GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_174400.1 K-box region protein (DUF1985) [Arabidopsis thaliana]	62	37	46	41
AT1G31180	no change	-0.28843403615537117	-0.10267566058896554	AT1G31180	--	GO:0000287,magnesium ion binding; GO:0003862,3-isopropylmalate dehydrogenase activity; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046872,metal ion binding; GO:0051287,NAD binding;	leuB, IMDH; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]; K00052;	NP_001322636.1 isopropylmalate dehydrogenase 3 [Arabidopsis thaliana]	278	353	224	170
AT1G31220	no change	-0.3657508854647862	0.34361120958431934	AT1G31220	--	GO:0004644,phosphoribosylglycinamide formyltransferase activity; GO:0005737,cytoplasm; GO:0006164,purine nucleotide biosynthetic process; GO:0006189,'de novo' IMP biosynthetic process; GO:0009058,biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0072522,purine-containing compound biosynthetic process;	E2.1.2.2; phosphoribosylglycinamide formyltransferase [EC:2.1.2.2]; K00601;	NP_174407.1 Formyl transferase [Arabidopsis thaliana]	40	26	26	28
AT1G31335	no change	0.12083763708377018	-0.6816738567975064	AT1G31335	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_564378.1 transmembrane protein [Arabidopsis thaliana]	20	7	7	4
AT1G31490	no change	-0.06634565751918511	-0.6476245594638848	AT1G31490	--	GO:0005507,copper ion binding; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0016740,transferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0048038,quinone binding;	--	NP_174434.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	18	27	9	10
AT1G31770	no change	-0.41177666044092265	-0.01214238879404285	AT1G31770	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009736,cytokinin-activated signaling pathway; GO:0010184,cytokinin transport; GO:0010222,stem vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0015562,efflux transmembrane transporter activity; GO:0016020,membrane; GO:0042542,response to hydrogen peroxide; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042742,defense response to bacterium; GO:0055085,transmembrane transport; GO:0140115,export across plasma membrane; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_564383.1 ATP-binding cassette 14 [Arabidopsis thaliana]	182	229	139	131
AT1G31780	no change	0.04368849840549969	-0.1116771872196766	AT1G31780	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0006891,intra-Golgi vesicle-mediated transport; GO:0007030,Golgi organization; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0016020,membrane; GO:0017119,Golgi transport complex;	--	NP_174458.2 oligomeric golgi complex subunit [Arabidopsis thaliana]	180	109	104	72
AT1G31800	no change	0.3222243523372318	-0.03117759945865095	AT1G31800	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010291,carotene beta-ring hydroxylase activity; GO:0016117,carotenoid biosynthetic process; GO:0016123,xanthophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	LUT5, CYP97A3; beta-ring hydroxylase [EC:1.14.-.-]; K15747;	NP_564384.1 cytochrome P450, family 97, subfamily A, polypeptide 3 [Arabidopsis thaliana]	274	307	223	158
AT1G31810	no change	0.16691233260254626	0.05833067256978638	AT1G31810	--	GO:0003779,actin binding; GO:0004721,phosphoprotein phosphatase activity; GO:0005819,spindle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009556,microsporogenesis; GO:0009574,preprophase band; GO:0015630,microtubule cytoskeleton; GO:0016787,hydrolase activity; GO:0051015,actin filament binding; GO:0051017,actin filament bundle assembly;	--	NP_001321171.1 Formin Homology 14 [Arabidopsis thaliana]	108	100	99	48
AT1G31910	no change	-0.4387528816175571	-0.4362520450232527	AT1G31910	--	GO:0000166,nucleotide binding; GO:0004631,phosphomevalonate kinase activity; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0010142,farnesyl diphosphate biosynthetic process, mevalonate pathway; GO:0016126,sterol biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019287,isopentenyl diphosphate biosynthetic process, mevalonate pathway;	E2.7.4.2, mvaK2; phosphomevalonate kinase [EC:2.7.4.2]; K00938;	NP_174473.1 GHMP kinase family protein [Arabidopsis thaliana]	351	368	159	187
AT1G31950	no change	-0.3141235214052703	0.27347567436924297	AT1G31950	--	GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0008299,isoprenoid biosynthetic process; GO:0009975,cyclase activity; GO:0010333,terpene synthase activity; GO:0016102,diterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0046872,metal ion binding; GO:0051762,sesquiterpene biosynthetic process;	--	NP_001320347.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein [Arabidopsis thaliana]	54	43	47	31
AT1G32060	no change	-0.5760551253459915	-0.5076458072899348	AT1G32060	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0008974,phosphoribulokinase activity; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0042803,protein homodimerization activity; GO:0048046,apoplast; GO:0097718,disordered domain specific binding; GO:0099080,supramolecular complex;	PRK, prkB; phosphoribulokinase [EC:2.7.1.19]; K00855;	NP_174486.1 phosphoribulokinase [Arabidopsis thaliana]	2242	1878	1024	880
AT1G32070	no change	-0.4530428593278204	-0.04350601951892716	AT1G32070	--	GO:0004059,aralkylamine N-acetyltransferase activity; GO:0004468,lysine N-acetyltransferase activity, acting on acetyl phosphate as donor; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008080,N-acetyltransferase activity; GO:0009507,chloroplast; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0030187,melatonin biosynthetic process; GO:0043231,intracellular membrane-bounded organelle; GO:0046739,transport of virus in multicellular host; GO:0062055,photosynthetic state transition;	SNAT; aralkylamine N-acetyltransferase [EC:2.3.1.87]; K22450;	NP_564387.1 nuclear shuttle interacting [Arabidopsis thaliana]	72	84	62	40
AT1G32460	no change	-0.4172818298901407	0.8264735668923419	AT1G32460	--	--	--	NP_564403.1 hypothetical protein AT1G32460 [Arabidopsis thaliana]	52	57	79	51
AT1G32640	no change	0.14963875226742815	0.6192474951226384	AT1G32640	bHLH	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006568,tryptophan metabolic process; GO:0009269,response to desiccation; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009753,response to jasmonic acid; GO:0009759,indole glucosinolate biosynthetic process; GO:0009963,positive regulation of flavonoid biosynthetic process; GO:0010374,stomatal complex development; GO:0019900,kinase binding; GO:0043565,sequence-specific DNA binding; GO:0043619,regulation of transcription from RNA polymerase II promoter in response to oxidative stress; GO:0045893,positive regulation of DNA-templated transcription; GO:0046983,protein dimerization activity; GO:0051090,regulation of DNA-binding transcription factor activity; GO:0051289,protein homotetramerization; GO:0090357,regulation of tryptophan metabolic process; GO:0106167,extracellular ATP signaling; GO:2000068,regulation of defense response to insect; GO:2000652,regulation of secondary cell wall biogenesis;	MYC2; transcription factor MYC2; K13422;	NP_174541.1 Basic helix-loop-helix (bHLH) DNA-binding family protein [Arabidopsis thaliana]	237	205	207	233
AT1G32740	no change	0.5269489612072582	0.8525381568178737	AT1G32740	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding;	--	NP_564408.1 SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]	20	12	17	20
AT1G32860	no change	-0.5244181007701856	0.384750318485089	AT1G32860	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_174563.2 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	74	43	57	43
AT1G33050	no change	0.4451804963969144	0.23922165157610828	AT1G33050	--	GO:0005515,protein binding;	--	NP_001185128.1 hypothetical protein AT1G33050 [Arabidopsis thaliana]	49	58	51	34
AT1G33360	no change	-0.4873460169808816	-0.2007540180624673	AT1G33360	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0051082,unfolded protein binding; GO:0051603,proteolysis involved in protein catabolic process; GO:0140662,ATP-dependent protein folding chaperone;	clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544;	NP_564423.3 ATP-dependent Clp protease [Arabidopsis thaliana]	135	99	81	54
AT1G33420	no change	0.5445173360706794	0.02695078309011763	AT1G33420	--	GO:0005634,nucleus; GO:0046872,metal ion binding;	--	NP_564424.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	97	68	65	46
AT1G33430	no change	-0.27896340382466545	-0.8913835939604002	AT1G33430	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0008194,UDP-glycosyltransferase activity; GO:0008378,galactosyltransferase activity; GO:0010407,non-classical arabinogalactan protein metabolic process; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0048531,beta-1,3-galactosyltransferase activity;	--	NP_001185130.1 Galactosyltransferase family protein [Arabidopsis thaliana]	398	362	139	130
AT1G33700	no change	0.524303283717306	-0.3387049354116782	AT1G33700	--	GO:0000325,plant-type vacuole; GO:0004348,glucosylceramidase activity; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0006629,lipid metabolic process; GO:0006680,glucosylceramide catabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	GBA2; non-lysosomal glucosylceramidase [EC:3.2.1.45]; K17108;	NP_001031135.1 Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]	61	57	30	31
AT1G33990	no change	-0.1081493031608096	-0.03986022730797153	AT1G33990	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_174661.1 methyl esterase 14 [Arabidopsis thaliana]	141	164	132	70
AT1G34000	no change	0.4567733734231338	-0.01725481577922196	AT1G34000	--	GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009642,response to light intensity; GO:0010207,photosystem II assembly; GO:0016020,membrane;	--	NP_564432.3 one-helix protein 2 [Arabidopsis thaliana]	118	77	80	48
AT1G34420	no change	-0.8756368090454214	0.3761294637400288	AT1G34420	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	CAD5314472.1 unnamed protein product [Arabidopsis thaliana]	11	5	5	8
AT1G34630	no change	-0.27689361890147246	0.6551254203784664	AT1G34630	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_174722.2 transmembrane protein [Arabidopsis thaliana]	23	13	31	8
AT1G35350	no change	-0.0804611808806103	-0.05748637564353762	AT1G35350	--	GO:0000822,inositol hexakisphosphate binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0006817,phosphate ion transport; GO:0015114,phosphate ion transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016036,cellular response to phosphate starvation; GO:0035435,phosphate ion transmembrane transport;	--	NP_174768.2 EXS (ERD1/XPR1/SYG1) family protein [Arabidopsis thaliana]	32	14	18	11
AT1G36390	no change	0.11448755066007396	-0.642687679269786	AT1G36390	--	GO:0000774,adenyl-nucleotide exchange factor activity; GO:0001405,PAM complex, Tim23 associated import motor; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0030150,protein import into mitochondrial matrix; GO:0042803,protein homodimerization activity; GO:0043621,protein self-association; GO:0046982,protein heterodimerization activity; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	--	NP_564475.1 Co-chaperone GrpE family protein [Arabidopsis thaliana]	59	62	37	16
AT1G37130	no change	-0.297824915324419	-0.06898915644699292	AT1G37130	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006809,nitric oxide biosynthetic process; GO:0008940,nitrate reductase activity; GO:0009416,response to light stimulus; GO:0009610,response to symbiotic fungus; GO:0009635,response to herbicide; GO:0009703,nitrate reductase (NADH) activity; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0030151,molybdenum ion binding; GO:0042128,nitrate assimilation; GO:0042802,identical protein binding; GO:0043546,molybdopterin cofactor binding; GO:0046872,metal ion binding; GO:0050464,nitrate reductase (NADPH) activity; GO:0071949,FAD binding;	NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3]; K10534;	NP_174901.1 nitrate reductase 2 [Arabidopsis thaliana]	105	76	72	43
AT1G41880	no change	0.2015886009823549	0.2621184514235033	AT1G41880	--	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0042273,ribosomal large subunit biogenesis; GO:1990904,ribonucleoprotein complex;	RP-L35Ae, RPL35A; large subunit ribosomal protein L35Ae; K02917;	NP_001319158.1 Ribosomal protein L35Ae family protein [Arabidopsis thaliana]	73	85	74	53
AT1G42970	no change	0.03627623324514935	-0.33919256144438076	AT1G42970	--	GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005634,nucleus; GO:0006006,glucose metabolic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0031969,chloroplast membrane; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:1901149,salicylic acid binding;	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298;	NP_174996.1 glyceraldehyde-3-phosphate dehydrogenase B subunit [Arabidopsis thaliana]	1971	1711	1077	847
AT1G43860	no change	0.21217796736440225	-0.0218119085633379	AT1G43860	--	GO:0000976,transcription cis-regulatory region binding; GO:0003676,nucleic acid binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0042254,ribosome biogenesis; GO:0042256,mature ribosome assembly;	SDO1, SBDS; ribosome maturation protein SDO1; K14574;	NP_564488.1 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	115	84	62	65
AT1G43910	no change	0.8572794037032326	-0.104890802904188	AT1G43910	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006950,response to stress; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0051365,cellular response to potassium ion starvation;	--	NP_175058.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	276	309	246	125
AT1G44120	no change	-0.50463658058833	-0.2145986198897754	AT1G44120	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0008017,microtubule binding; GO:0008360,regulation of cell shape; GO:0010330,cellulose synthase complex; GO:0016020,membrane; GO:0051211,anisotropic cell growth; GO:0071555,cell wall organization; GO:2001006,regulation of cellulose biosynthetic process;	--	NP_001321524.1 CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]	134	64	58	52
AT1G44780	no change	-0.16812156917708412	-0.922860185162168	AT1G44780	--	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005634,nucleus; GO:0006413,translational initiation; GO:0008150,biological_process;	--	NP_175099.2 translation initiation factor [Arabidopsis thaliana]	56	44	15	19
AT1G44790	no change	0.3621610297499301	-0.7087776925114648	AT1G44790	--	GO:0003839,gamma-glutamylcyclotransferase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006751,glutathione catabolic process; GO:0016829,lyase activity;	GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9]; K22596;	NP_564490.1 ChaC-like family protein [Arabidopsis thaliana]	52	24	16	14
AT1G44910	no change	-0.1952518930993787	0.35255193972330207	AT1G44910	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005685,U1 snRNP; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016592,mediator complex; GO:0045292,mRNA cis splicing, via spliceosome; GO:0070063,RNA polymerase binding; GO:0071004,U2-type prespliceosome;	PRPF40, PRP40; pre-mRNA-processing factor 40; K12821;	NP_175113.2 pre-mRNA-processing protein 40A [Arabidopsis thaliana]	131	137	130	98
AT1G44920	no change	0.04259496452988186	-0.11406671872622708	AT1G44920	--	GO:0003729,mRNA binding; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_564492.1 transmembrane protein [Arabidopsis thaliana]	49	58	37	29
AT1G45545	no change	-0.6482280640031249	-0.5892917762238599	AT1G45545	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement;	--	NP_001322527.1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) [Arabidopsis thaliana]	81	26	22	23
AT1G47128	no change	0.19431242873438775	0.17397422990368328	AT1G47128	--	GO:0000325,plant-type vacuole; GO:0000932,P-body; GO:0004197,cysteine-type endopeptidase activity; GO:0005515,protein binding; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005764,lysosome; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009506,plasmodesma; GO:0010494,cytoplasmic stress granule; GO:0016567,protein ubiquitination; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:0051603,proteolysis involved in protein catabolic process; GO:0090333,regulation of stomatal closure; GO:0099503,secretory vesicle;	--	NP_564497.1 Granulin repeat cysteine protease family protein [Arabidopsis thaliana]	3715	3380	3041	2274
AT1G47230	no change	-0.03762818659668271	-0.09369311635823388	AT1G47230	--	GO:0000079,regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0016538,cyclin-dependent protein serine/threonine kinase regulator activity; GO:0044772,mitotic cell cycle phase transition; GO:0051301,cell division;	CCNA; cyclin-A; K06627;	NP_175156.1 CYCLIN A3;4 [Arabidopsis thaliana]	15	18	8	12
AT1G47250	no change	0.7354226503299774	-0.22010412628387824	AT1G47250	--	GO:0000502,proteasome complex; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005839,proteasome core complex; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009506,plasmodesma; GO:0010498,proteasomal protein catabolic process; GO:0019773,proteasome core complex, alpha-subunit complex; GO:0051603,proteolysis involved in protein catabolic process;	PSMA1; 20S proteasome subunit alpha 6 [EC:3.4.25.1]; K02725;	NP_175158.1 20S proteasome alpha subunit F2 [Arabidopsis thaliana]	165	154	110	73
AT1G47260	no change	0.2349960310125518	-0.2559608841990506	AT1G47260	--	GO:0004089,carbonate dehydratase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0009853,photorespiration; GO:0009901,anther dehiscence; GO:0016020,membrane; GO:0016829,lyase activity; GO:0031966,mitochondrial membrane; GO:0042802,identical protein binding; GO:0045271,respiratory chain complex I; GO:0046872,metal ion binding; GO:0070207,protein homotrimerization; GO:2000377,regulation of reactive oxygen species metabolic process;	GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-]; K01726;	NP_175159.1 gamma carbonic anhydrase 2 [Arabidopsis thaliana]	970	965	587	486
AT1G47410	no change	0.36317503442294496	-0.9990040854481044	AT1G47410	--	GO:0008150,biological_process;	--	NP_001185160.1 hypothetical protein AT1G47410 [Arabidopsis thaliana]	7	11	3	3
AT1G47420	no change	0.5222533870744676	-0.05389489511799332	AT1G47420	--	GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005749,mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone); GO:0006099,tricarboxylic acid cycle; GO:0016020,membrane; GO:0045273,respiratory chain complex II;	--	NP_564506.1 succinate dehydrogenase 5 [Arabidopsis thaliana]	565	551	408	307
AT1G47750	no change	-0.5762097319888739	-0.02200962462595586	AT1G47750	--	GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0007031,peroxisome organization; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size;	--	NP_564514.1 peroxin 11A [Arabidopsis thaliana]	41	56	41	24
AT1G47970	no change	-0.0695587784443657	0.01207609106051567	AT1G47970	--	--	--	KAG7648896.1 hypothetical protein ISN45_At01g039850 [Arabidopsis thaliana x Arabidopsis arenosa]	397	347	272	223
AT1G48160	no change	0.6580063132413964	-0.00489299630397864	AT1G48160	--	GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0006617,SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; GO:0008312,7S RNA binding; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP19; signal recognition particle subunit SRP19; K03105;	NP_001323146.1 signal recognition particle 19 kDa protein, putative / SRP19 [Arabidopsis thaliana]	65	63	44	40
AT1G48300	no change	0.14005640682906922	-0.4519264675162289	AT1G48300	--	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005829,cytosol; GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019432,triglyceride biosynthetic process; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	DGAT3; diacylglycerol O-acyltransferase 3, plant [EC:2.3.1.20]; K22849;	NP_175264.3 diacylglycerol acyltransferase [Arabidopsis thaliana]	285	322	161	134
AT1G48310	no change	0.3918266010765145	-0.20900406555136888	AT1G48310	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0031297,replication fork processing; GO:0036310,ATP-dependent DNA/DNA annealing activity; GO:0043596,nuclear replication fork; GO:0048478,replication fork protection; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_175265.3 chromatin remodeling factor18 [Arabidopsis thaliana]	43	39	32	16
AT1G48320	no change	-0.5497155607140926	-0.7478251318136315	AT1G48320	--	GO:0005777,peroxisome; GO:0016787,hydrolase activity; GO:0042372,phylloquinone biosynthetic process; GO:0051289,protein homotetramerization; GO:0061522,1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity;	menI, DHNAT; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]; K19222;	NP_175266.1 Thioesterase superfamily protein [Arabidopsis thaliana]	7	16	9	1
AT1G48380	no change	-0.38137924225872694	-0.06512309663390953	AT1G48380	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0016020,membrane; GO:0042023,DNA endoreduplication; GO:0048766,root hair initiation;	--	NP_564526.1 root hair initiation protein root hairless 1 (RHL1) [Arabidopsis thaliana]	19	14	13	8
AT1G48450	no change	-0.03028833668789915	-0.9211934754531366	AT1G48450	--	GO:0005515,protein binding; GO:0016874,ligase activity;	--	NP_001185170.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]	373	316	144	98
AT1G48560	no change	0.5538326773489058	-0.5939708652775252	AT1G48560	--	GO:0005515,protein binding;	--	NP_175289.2 hypothetical protein AT1G48560 [Arabidopsis thaliana]	23	20	17	3
AT1G48570	no change	0.5344948646284431	0.6527277274075022	AT1G48570	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0046872,metal ion binding;	--	NP_175290.1 zinc finger (Ran-binding) family protein [Arabidopsis thaliana]	255	189	261	199
AT1G48600	no change	0.3543440675162388	-0.49292020106460827	AT1G48600	--	GO:0000234,phosphoethanolamine N-methyltransferase activity; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006656,phosphatidylcholine biosynthetic process; GO:0008168,methyltransferase activity; GO:0008654,phospholipid biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0052667,phosphomethylethanolamine N-methyltransferase activity; GO:0071704,organic substance metabolic process;	E2.1.1.103, NMT; phosphoethanolamine N-methyltransferase [EC:2.1.1.103]; K05929;	NP_973993.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	409	411	222	166
AT1G48760	no change	-0.12345950964129464	-0.03288743992595457	AT1G48760	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006623,protein targeting to vacuole; GO:0006886,intracellular protein transport; GO:0006896,Golgi to vacuole transport; GO:0006903,vesicle targeting; GO:0007032,endosome organization; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030117,membrane coat; GO:0030123,AP-3 adaptor complex; GO:0080171,lytic vacuole organization; GO:1990019,protein storage vacuole organization;	AP3D; AP-3 complex subunit delta; K12396;	NP_001031156.1 delta-adaptin [Arabidopsis thaliana]	113	92	57	72
AT1G48840	no change	0.2240817794679587	0.6933536602704963	AT1G48840	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_175315.2 heat-inducible transcription repressor (DUF639) [Arabidopsis thaliana]	24	25	26	26
AT1G48850	no change	-0.0225229654893737	-0.3884884591041226	AT1G48850	--	GO:0004107,chorismate synthase activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009423,chorismate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010181,FMN binding; GO:0016829,lyase activity;	aroC; chorismate synthase [EC:4.2.3.5]; K01736;	NP_564534.1 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [Arabidopsis thaliana]	393	336	217	153
AT1G48920	no change	0.8394497718731253	0.7207514069649857	AT1G48920	--	GO:0000478,endonucleolytic cleavage involved in rRNA processing; GO:0001731,formation of translation preinitiation complex; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006364,rRNA processing; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0033592,RNA strand annealing activity; GO:0034057,RNA strand-exchange activity; GO:0042254,ribosome biogenesis; GO:0043024,ribosomal small subunit binding; GO:0048364,root development; GO:0048366,leaf development; GO:0048367,shoot system development; GO:0080056,petal vascular tissue pattern formation; GO:0080057,sepal vascular tissue pattern formation; GO:0097010,eukaryotic translation initiation factor 4F complex assembly;	NCL, NSR1; nucleolin; K11294;	NP_175322.1 nucleolin like 1 [Arabidopsis thaliana]	3124	3091	4064	2792
AT1G48960	no change	0.15930147470629355	0.2048784379959105	AT1G48960	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016787,hydrolase activity;	--	NP_564536.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]	4	9	10	1
AT1G49650	no change	-0.7106158095525539	-0.32229984740785655	AT1G49650	--	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity;	--	NP_564550.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	87	54	37	36
AT1G49660	no change	-0.3705856758490224	-0.30221621417180977	AT1G49660	--	GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity;	--	NP_175389.1 carboxyesterase 5 [Arabidopsis thaliana]	83	46	37	31
AT1G49720	no change	-0.66668206125129	-0.14749404835252436	AT1G49720	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009738,abscisic acid-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription;	ABF; ABA responsive element binding factor; K14432;	NP_001322564.1 abscisic acid responsive element-binding factor 1 [Arabidopsis thaliana]	62	63	58	20
AT1G49730	no change	-0.6731149376294729	0.1634361284686836	AT1G49730	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_849788.2 Protein kinase superfamily protein [Arabidopsis thaliana]	48	41	43	24
AT1G49750	no change	-0.603437606909793	-0.2337492971988349	AT1G49750	--	GO:0005634,nucleus;	--	NP_175397.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	421	459	251	242
AT1G49780	no change	0.9317117872584166	-0.7922843272343916	AT1G49780	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity; GO:0098542,defense response to other organism;	--	NP_175400.1 plant U-box 26 [Arabidopsis thaliana]	83	73	30	29
AT1G49820	no change	0.10465921074549411	0.8407334955607805	AT1G49820	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009086,methionine biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019509,L-methionine salvage from methylthioadenosine; GO:0042802,identical protein binding; GO:0046522,S-methyl-5-thioribose kinase activity;	mtnK; 5-methylthioribose kinase [EC:2.7.1.100]; K00899;	NP_564555.1 S-methyl-5-thioribose kinase [Arabidopsis thaliana]	65	57	63	78
AT1G49960	no change	-0.5765826503226387	0.9037504252858056	AT1G49960	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071702,organic substance transport;	--	NP_175418.1 Xanthine/uracil permease family protein [Arabidopsis thaliana]	6	6	14	2
AT1G49970	no change	0.0925552283369252	-0.3828707693625707	AT1G49970	--	GO:0003723,RNA binding; GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0009368,endopeptidase Clp complex; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0009941,chloroplast envelope; GO:0051117,ATPase binding;	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358;	NP_564560.1 CLP protease proteolytic subunit 1 [Arabidopsis thaliana]	596	510	322	240
AT1G50240	no change	-0.6908809669824468	-0.1040115734920914	AT1G50240	--	GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0006468,protein phosphorylation; GO:0007112,male meiosis cytokinesis; GO:0009524,phragmoplast; GO:0009558,embryo sac cellularization; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019894,kinesin binding; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	FU; fused [EC:2.7.11.1]; K06228;	NP_001319189.1 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]	145	128	94	74
AT1G50310	no change	-0.3856456140913998	-0.731373861728075	AT1G50310	--	GO:0008643,carbohydrate transport; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_175449.1 sugar transporter 9 [Arabidopsis thaliana]	316	247	117	105
AT1G50440	no change	-0.6703936109791767	-0.228144843025164	AT1G50440	--	GO:0008150,biological_process; GO:0008270,zinc ion binding; GO:0016020,membrane;	--	NP_001117462.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	30	11	15	8
AT1G50480	no change	0.13760823207903525	0.09576251973557524	AT1G50480	--	GO:0000166,nucleotide binding; GO:0004329,formate-tetrahydrofolate ligase activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006730,one-carbon metabolic process; GO:0009507,chloroplast; GO:0016874,ligase activity; GO:0035999,tetrahydrofolate interconversion; GO:0048046,apoplast;	fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]; K01938;	NP_564571.1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana]	1345	996	975	681
AT1G50490	no change	-0.7508547051239722	0.11396585522076728	AT1G50490	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0030071,regulation of mitotic metaphase/anaphase transition; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0061631,ubiquitin conjugating enzyme activity;	UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C [EC:2.3.2.23]; K06688;	NP_564572.1 ubiquitin-conjugating enzyme 20 [Arabidopsis thaliana]	107	80	79	55
AT1G50700	no change	-0.3837129582236464	-0.03855727390429266	AT1G50700	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_175485.1 calcium-dependent protein kinase 33 [Arabidopsis thaliana]	37	35	13	31
AT1G50900	no change	0.810718074572203	-0.84493983741898	AT1G50900	--	GO:0005515,protein binding; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0090391,granum assembly;	--	NP_564580.1 Ankyrin repeat family protein [Arabidopsis thaliana]	206	149	79	52
AT1G50910	no change	-0.44969254674499726	0.9195813655653994	AT1G50910	--	--	--	NP_175504.2 hypothetical protein AT1G50910 [Arabidopsis thaliana]	16	12	15	19
AT1G51080	no change	-0.17451381292492155	0.6559492703342774	AT1G51080	--	GO:0008150,biological_process; GO:0009536,plastid;	--	NP_175519.1 golgin family A protein [Arabidopsis thaliana]	20	20	19	22
AT1G51170	no change	-0.6858823403418856	0.23224527857113764	AT1G51170	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0036290,protein trans-autophosphorylation; GO:0051782,negative regulation of cell division; GO:0080060,integument development; GO:0106310,protein serine kinase activity;	--	NP_564584.1 Protein kinase superfamily protein [Arabidopsis thaliana]	142	121	119	86
AT1G51400	no change	-0.7890893928730104	-0.911855360765243	AT1G51400	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009535,chloroplast thylakoid membrane; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B; GO:0019904,protein domain specific binding;	--	NP_564589.1 Photosystem II 5 kD protein [Arabidopsis thaliana]	192	147	57	60
AT1G51550	no change	-0.0976756098834962	0.1748089952970364	AT1G51550	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0007623,circadian rhythm; GO:0009637,response to blue light; GO:0019005,SCF ubiquitin ligase complex;	--	NP_564592.1 Kelch repeat-containing F-box family protein [Arabidopsis thaliana]	26	13	18	11
AT1G51600	no change	0.3024048143062145	0.6686930827897664	AT1G51600	GATA	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0042802,identical protein binding; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding;	--	NP_564593.1 ZIM-LIKE 2 [Arabidopsis thaliana]	22	22	29	18
AT1G51670	no change	0.6333623217662188	-0.16129417124133938	AT1G51670	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009408,response to heat; GO:0009409,response to cold; GO:0010286,heat acclimation;	--	NP_001322196.1 hypothetical protein AT1G51670 [Arabidopsis thaliana]	7	10	10	1
AT1G52500	no change	-0.9511108886471092	-0.20560885817245209	AT1G52500	--	GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003684,damaged DNA binding; GO:0003824,catalytic activity; GO:0003906,DNA-(apurinic or apyrimidinic site) endonuclease activity; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0006974,cellular response to DNA damage stimulus; GO:0006979,response to oxidative stress; GO:0008152,metabolic process; GO:0008270,zinc ion binding; GO:0008534,oxidized purine nucleobase lesion DNA N-glycosylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016799,hydrolase activity, hydrolyzing N-glycosyl compounds; GO:0016829,lyase activity; GO:0019104,DNA N-glycosylase activity; GO:0140078,class I DNA-(apurinic or apyrimidinic site) endonuclease activity;	mutM, fpg; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]; K10563;	NP_564608.1 MUTM homolog-1 [Arabidopsis thaliana]	39	46	21	27
AT1G52510	no change	0.4863765373999027	0.3250670267369634	AT1G52510	--	GO:0003674,molecular_function; GO:0003824,catalytic activity; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_175660.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	241	260	225	191
AT1G52630	no change	-0.2069412898393252	0.5097748649090582	AT1G52630	--	GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_175672.2 O-fucosyltransferase family protein [Arabidopsis thaliana]	23	27	24	23
AT1G53230	no change	-0.8441067224868942	0.3429844576327118	AT1G53230	TCP	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0010150,leaf senescence; GO:0043565,sequence-specific DNA binding; GO:0048366,leaf development; GO:2000032,regulation of secondary shoot formation;	--	NP_001322492.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 [Arabidopsis thaliana]	10	11	6	11
AT1G53440	no change	-0.6760307511778603	-0.08572263797849151	AT1G53440	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_175749.1 Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	343	279	197	186
AT1G53450	no change	0.03172616115593797	-0.2605283935688548	AT1G53450	--	GO:0008150,biological_process;	--	NP_564631.2 epstein-barr nuclear antigen [Arabidopsis thaliana]	28	21	10	16
AT1G53750	no change	-0.1197637413909667	0.23942508655983272	AT1G53750	--	GO:0000166,nucleotide binding; GO:0000502,proteasome complex; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008540,proteasome regulatory particle, base subcomplex; GO:0016887,ATP hydrolysis activity; GO:0030163,protein catabolic process; GO:0036402,proteasome-activating activity; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:1901800,positive regulation of proteasomal protein catabolic process;	PSMC2, RPT1; 26S proteasome regulatory subunit T1; K03061;	NP_175778.1 regulatory particle triple-A 1A [Arabidopsis thaliana]	775	760	740	476
AT1G53910	no change	-0.4899202479522889	0.17483279253450446	AT1G53910	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; GO:0016020,membrane; GO:0070483,detection of hypoxia; GO:2000280,regulation of root development;	--	NP_001031185.1 related to AP2 12 [Arabidopsis thaliana]	897	799	711	556
AT1G54160	no change	0.5665471685948748	0.5255159737564463	AT1G54160	NF-YA	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009414,response to water deprivation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009785,blue light signaling pathway; GO:0009793,embryo development ending in seed dormancy; GO:0010262,somatic embryogenesis; GO:0016602,CCAAT-binding factor complex; GO:0045892,negative regulation of DNA-templated transcription; GO:0048316,seed development;	NFYA, HAP2; nuclear transcription factor Y, alpha; K08064;	NP_175818.1 nuclear factor Y, subunit A5 [Arabidopsis thaliana]	27	21	28	18
AT1G54200	no change	0.43126493835070995	0.7064395911486127	AT1G54200	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009734,auxin-activated signaling pathway; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0016020,membrane; GO:0060918,auxin transport;	--	NP_175822.1 DNA mismatch repair Msh6-like protein [Arabidopsis thaliana]	16	20	31	10
AT1G54310	no change	-0.3690174936868986	0.4103795360086062	AT1G54310	--	GO:0003723,RNA binding; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_974023.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	41	28	38	23
AT1G54320	no change	0.7079058681309661	0.05327238009876077	AT1G54320	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0033036,macromolecule localization;	--	NP_564656.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]	168	170	136	98
AT1G54360	no change	-0.1253269038178406	-0.19238792298618387	AT1G54360	--	GO:0000124,SAGA complex; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006367,transcription initiation at RNA polymerase II promoter; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0046695,SLIK (SAGA-like) complex; GO:0046982,protein heterodimerization activity;	TAF6; transcription initiation factor TFIID subunit 6; K03131;	AAS17939.1 TATA binding protein associated factor 6b isoform 2, partial [Arabidopsis thaliana]	65	61	35	37
AT1G54370	no change	-0.18813551771129147	-0.12869579702390063	AT1G54370	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006814,sodium ion transport; GO:0006885,regulation of pH; GO:0010008,endosome membrane; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0015385,sodium:proton antiporter activity; GO:0015386,potassium:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0032580,Golgi cisterna membrane; GO:0051453,regulation of intracellular pH; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0098719,sodium ion import across plasma membrane; GO:1902600,proton transmembrane transport;	--	NP_175839.2 sodium hydrogen exchanger 5 [Arabidopsis thaliana]	120	142	79	79
AT1G54410	no change	0.5100630480673544	-0.23892113307751076	AT1G54410	--	GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0010730,negative regulation of hydrogen peroxide biosynthetic process; GO:0016151,nickel cation binding; GO:0046872,metal ion binding; GO:0050897,cobalt ion binding;	--	NP_175843.1 dehydrin family protein [Arabidopsis thaliana]	10184	6126	4656	4274
AT1G54500	no change	0.6852336258368109	-0.4366575138673374	AT1G54500	--	GO:0005506,iron ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0043448,alkane catabolic process; GO:0046872,metal ion binding;	--	NP_175852.1 Rubredoxin-like superfamily protein [Arabidopsis thaliana]	78	58	42	25
AT1G54690	no change	-0.602896447084203	0.14096831141661892	AT1G54690	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2A; histone H2A; K11251;	NP_175868.1 gamma histone variant H2AX [Arabidopsis thaliana]	294	222	207	167
AT1G54790	no change	-0.5900362483590353	-0.0620988303145393	AT1G54790	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_001185228.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	24	25	27	6
AT1G55130	no change	0.32536690685872716	-0.1018627853593118	AT1G55130	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0072657,protein localization to membrane;	--	CAD5315601.1 unnamed protein product [Arabidopsis thaliana]	214	169	125	109
AT1G55160	no change	-0.2430770230826332	0.24780034332616707	AT1G55160	--	GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_564677.1 WAS/WASL-interacting family protein [Arabidopsis thaliana]	85	42	60	39
AT1G55180	no change	-0.14772165268127443	0.23802296109635163	AT1G55180	--	GO:0003824,catalytic activity; GO:0004630,phospholipase D activity; GO:0005509,calcium ion binding; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006970,response to osmotic stress; GO:0006995,cellular response to nitrogen starvation; GO:0009395,phospholipid catabolic process; GO:0009791,post-embryonic development; GO:0009825,multidimensional cell growth; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0045848,positive regulation of nitrogen utilization; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0048364,root development; GO:0051301,cell division; GO:0051365,cellular response to potassium ion starvation; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_175914.1 phospholipase D alpha 4 [Arabidopsis thaliana]	14	14	18	5
AT1G55265	no change	-0.6605697779824224	0.16916884763062748	AT1G55265	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0099503,secretory vesicle;	--	NP_564683.1 DUF538 family protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]	161	157	121	114
AT1G55480	no change	0.4196740818477385	-0.3493670591680892	AT1G55480	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009575,chromoplast stroma; GO:0009579,thylakoid; GO:0009611,response to wounding; GO:0009644,response to high light intensity; GO:0009941,chloroplast envelope; GO:0010206,photosystem II repair; GO:0010207,photosystem II assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0035448,extrinsic component of thylakoid membrane;	--	NP_564691.1 protein containing PDZ domain, a K-box domain, and a TPR region [Arabidopsis thaliana]	177	162	92	83
AT1G55520	no change	0.13957126291758418	-0.2581736551268091	AT1G55520	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006352,DNA-templated transcription initiation; GO:0006366,transcription by RNA polymerase II; GO:0016020,membrane; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0017025,TBP-class protein binding; GO:0140223,general transcription initiation factor activity;	TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein; K03120;	NP_001321103.1 TATA binding protein 2 [Arabidopsis thaliana]	42	39	15	28
AT1G55670	no change	-0.4355840860388101	-0.5071503970759508	AT1G55670	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009780,photosynthetic NADP+ reduction; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0030093,chloroplast photosystem I; GO:0031969,chloroplast membrane; GO:0042550,photosystem I stabilization; GO:0050821,protein stabilization;	psaG; photosystem I subunit V; K08905;	NP_175963.1 photosystem I subunit G [Arabidopsis thaliana]	214	178	107	76
AT1G55830	no change	0.9615722309168012	0.24643454401597653	AT1G55830	--	GO:0097602,cullin family protein binding; GO:2000060,positive regulation of ubiquitin-dependent protein catabolic process;	--	NP_001185244.1 coiled-coil protein [Arabidopsis thaliana]	32	28	26	21
AT1G56070	no change	0.8628425837749714	0.16166988390889064	AT1G56070	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005507,copper ion binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009631,cold acclimation; GO:0043022,ribosome binding; GO:1990904,ribonucleoprotein complex;	EEF2; elongation factor 2; K03234;	NP_001321033.1 Ribosomal protein S5/Elongation factor G/III/V family protein [Arabidopsis thaliana]	17669	16793	14451	11142
AT1G56180	no change	0.46250886407026826	-0.6213420025638939	AT1G56180	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042651,thylakoid membrane; GO:0048366,leaf development;	--	NP_564711.1 ATP-dependent zinc metalloprotease [Arabidopsis thaliana]	44	10	16	7
AT1G56300	no change	0.28636388393520995	-0.3087491205566269	AT1G56300	--	GO:0010583,response to cyclopentenone;	--	NP_564717.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	198	151	112	75
AT1G56580	no change	-0.07547178520481707	-0.23951135196660883	AT1G56580	--	GO:0009737,response to abscisic acid; GO:0010090,trichome morphogenesis;	--	NP_564720.1 plant/protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]	1893	1720	1179	856
AT1G56610	no change	-0.16147904172364858	0.5067130081175758	AT1G56610	--	GO:0016020,membrane; GO:0016567,protein ubiquitination;	--	NP_176054.2 Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]	29	9	21	14
AT1G59710	no change	-0.3704228990505609	4.231399105520156e-4	AT1G59710	--	GO:0005634,nucleus;	--	NP_564751.1 actin cross-linking protein (DUF569) [Arabidopsis thaliana]	56	50	33	36
AT1G59720	no change	0.37290030849059	-0.766504139518545	AT1G59720	--	GO:0004519,endonuclease activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016556,mRNA modification; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	--	NP_176180.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	45	25	16	11
AT1G59840	no change	-0.31792062290194334	0.4932775776294969	AT1G59840	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane;	--	NP_176193.2 cofactor assembly of complex C [Arabidopsis thaliana]	12	11	15	7
AT1G59850	no change	-0.32983312976663665	0.4277672722624891	AT1G59850	--	GO:0005874,microtubule; GO:0008017,microtubule binding; GO:0008150,biological_process;	--	NP_176194.1 ARM repeat superfamily protein [Arabidopsis thaliana]	8	5	4	7
AT1G59870	no change	0.19942487748785015	0.07519540362696872	AT1G59870	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002229,defense response to oomycetes; GO:0002237,response to molecule of bacterial origin; GO:0002238,response to molecule of fungal origin; GO:0002239,response to oomycetes; GO:0002240,response to molecule of oomycetes origin; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009636,response to toxic substance; GO:0009651,response to salt stress; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009804,coumarin metabolic process; GO:0009926,auxin polar transport; GO:0009941,chloroplast envelope; GO:0010200,response to chitin; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010928,regulation of auxin mediated signaling pathway; GO:0015086,cadmium ion transmembrane transporter activity; GO:0015562,efflux transmembrane transporter activity; GO:0015691,cadmium ion transport; GO:0016020,membrane; GO:0031348,negative regulation of defense response; GO:0042344,indole glucosinolate catabolic process; GO:0042742,defense response to bacterium; GO:0046104,thymidine metabolic process; GO:0048364,root development; GO:0048825,cotyledon development; GO:0050832,defense response to fungus; GO:0052544,defense response by callose deposition in cell wall; GO:0055078,sodium ion homeostasis; GO:0055085,transmembrane transport; GO:0070574,cadmium ion transmembrane transport; GO:0071366,cellular response to indolebutyric acid stimulus; GO:0080147,root hair cell development; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity; GO:0140426,PAMP-triggered immunity signalling pathway; GO:1990748,cellular detoxification; GO:2000023,regulation of lateral root development; GO:2000071,regulation of defense response by callose deposition;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_176196.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]	494	500	432	272
AT1G59900	no change	0.7998176703631047	-0.17157894267778168	AT1G59900	--	GO:0004739,pyruvate dehydrogenase (acetyl-transferring) activity; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006086,acetyl-CoA biosynthetic process from pyruvate; GO:0006096,glycolytic process; GO:0016491,oxidoreductase activity; GO:0016624,oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor; GO:0043231,intracellular membrane-bounded organelle; GO:0046686,response to cadmium ion;	PDHA, pdhA; pyruvate dehydrogenase E1 component alpha subunit [EC:1.2.4.1]; K00161;	NP_176198.1 pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana]	588	559	377	298
AT1G59910	no change	-0.07288618115704946	-0.5724904658882293	AT1G59910	--	GO:0003779,actin binding; GO:0030036,actin cytoskeleton organization; GO:0045010,actin nucleation; GO:0051015,actin filament binding;	--	NP_176199.1 Actin-binding FH2 (formin homology 2) family protein [Arabidopsis thaliana]	120	64	53	29
AT1G60220	no change	0.07862282867055875	0.22413153993620305	AT1G60220	--	GO:0005634,nucleus; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009651,response to salt stress; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016607,nuclear speck; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0016929,deSUMOylase activity; GO:0070139,SUMO-specific endopeptidase activity;	--	NP_176228.3 UB-like protease 1D [Arabidopsis thaliana]	29	39	34	20
AT1G60870	no change	-0.6738063670172982	0.2990787737841277	AT1G60870	--	GO:0009506,plasmodesma; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy;	--	NP_564765.1 maternal effect embryo arrest 9 [Arabidopsis thaliana]	142	166	163	94
AT1G60990	no change	-0.36121649214484736	-0.00415408734025146	AT1G60990	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity;	--	NP_001077748.1 Glycine cleavage T-protein family [Arabidopsis thaliana]	321	262	233	154
AT1G61667	no change	0.35487558239689215	0.39893495710595533	AT1G61667	--	GO:0003674,molecular_function;	--	NP_001322874.1 serine protease, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]	5	14	9	8
AT1G61680	no change	0.1513534510989988	-0.0270575078312028	AT1G61680	--	GO:0000287,magnesium ion binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010333,terpene synthase activity; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0034007,S-linalool synthase activity; GO:0043693,monoterpene biosynthetic process; GO:0046872,metal ion binding;	TPS14; (3S)-linalool synthase [EC:4.2.3.25]; K15086;	NP_001185286.1 terpene synthase 14 [Arabidopsis thaliana]	433	400	337	211
AT1G61740	no change	-0.22402344779307395	-0.5535118014134925	AT1G61740	--	GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016567,protein ubiquitination; GO:0031464,Cul4A-RING E3 ubiquitin ligase complex;	--	NP_176367.1 Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana]	205	135	97	57
AT1G61770	no change	0.16413437357909244	-0.09136058096645716	AT1G61770	--	GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006457,protein folding; GO:0016020,membrane;	--	NP_176370.2 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	153	123	91	79
AT1G62380	no change	0.01789980778051771	-0.905046147619242	AT1G62380	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009693,ethylene biosynthetic process; GO:0009727,detection of ethylene stimulus; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0010030,positive regulation of seed germination; GO:0016491,oxidoreductase activity; GO:0031418,L-ascorbic acid binding; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0071398,cellular response to fatty acid; GO:0071732,cellular response to nitric oxide;	E1.14.17.4; aminocyclopropanecarboxylate oxidase [EC:1.14.17.4]; K05933;	NP_176428.1 ACC oxidase 2 [Arabidopsis thaliana]	11675	10372	4442	3364
AT1G62480	no change	-0.3556233001000091	-0.7459772975333131	AT1G62480	--	GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_564795.1 Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]	1399	1270	644	420
AT1G62740	no change	-0.2409392464768937	-7.742393419009534e-4	AT1G62740	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0030544,Hsp70 protein binding; GO:0046686,response to cadmium ion; GO:0051131,chaperone-mediated protein complex assembly; GO:0051879,Hsp90 protein binding; GO:0070678,preprotein binding;	STIP1; stress-induced-phosphoprotein 1; K09553;	NP_176461.1 stress-inducible protein [Arabidopsis thaliana]	409	379	283	237
AT1G62750	no change	0.8924234207668766	-0.7420490838447105	AT1G62750	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005524,ATP binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009791,post-embryonic development; GO:0009845,seed germination; GO:0009941,chloroplast envelope; GO:0032543,mitochondrial translation; GO:0032790,ribosome disassembly; GO:0048046,apoplast;	--	NP_564801.1 Translation elongation factor EFG/EF2 protein [Arabidopsis thaliana]	1386	1261	561	482
AT1G62810	no change	0.4572714583247728	-0.2663142467765967	AT1G62810	--	GO:0002237,response to molecule of bacterial origin; GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006809,nitric oxide biosynthetic process; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009414,response to water deprivation; GO:0009447,putrescine catabolic process; GO:0009611,response to wounding; GO:0009733,response to auxin; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0048046,apoplast; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; GO:1904585,response to putrescine;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_176469.1 Copper amine oxidase family protein [Arabidopsis thaliana]	47	46	27	24
AT1G63240	no change	0.33140037003075334	-0.2549802596440917	AT1G63240	--	GO:0003908,methylated-DNA-[protein]-cysteine S-methyltransferase activity;	--	NP_564812.1 hypothetical protein AT1G63240 [Arabidopsis thaliana]	87	79	35	54
AT1G63850	no change	0.20945176296184667	-0.1896088256079743	AT1G63850	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_176570.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]	112	124	78	60
AT1G64080	no change	-0.3138856887746858	0.4089238651905797	AT1G64080	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_176591.1 membrane-associated kinase regulator [Arabidopsis thaliana]	41	33	32	32
AT1G64280	no change	-0.38088878217653	-0.2642294277402343	AT1G64280	--	GO:0001666,response to hypoxia; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0009408,response to heat; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009682,induced systemic resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0010112,regulation of systemic acquired resistance; GO:0016567,protein ubiquitination; GO:0031348,negative regulation of defense response; GO:0042742,defense response to bacterium; GO:0045893,positive regulation of DNA-templated transcription; GO:0050832,defense response to fungus; GO:0080027,response to herbivore; GO:0090575,RNA polymerase II transcription regulator complex; GO:0106167,extracellular ATP signaling; GO:2000022,regulation of jasmonic acid mediated signaling pathway; GO:2000031,regulation of salicylic acid mediated signaling pathway;	NPR1; regulatory protein NPR1; K14508;	NP_176610.1 regulatory protein (NPR1) [Arabidopsis thaliana]	53	49	41	17
AT1G64620	no change	-0.34616596971758246	0.6228955013657442	AT1G64620	Dof	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_564836.1 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	9	8	8	9
AT1G64640	no change	0.7562544036681358	-0.267462588451084	AT1G64640	--	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0022900,electron transport chain;	--	NP_176645.3 early nodulin-like protein 8 [Arabidopsis thaliana]	108	76	54	46
AT1G64720	no change	-0.4417602373068454	-0.17100085667377815	AT1G64720	--	GO:0005773,vacuole; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_176653.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	123	115	78	62
AT1G64960	no change	-0.05063325806461968	0.10452138569768482	AT1G64960	--	GO:0000070,mitotic sister chromatid segregation; GO:0000796,condensin complex; GO:0005634,nucleus; GO:0005739,mitochondrion;	--	NP_001322301.1 ARM repeat superfamily protein [Arabidopsis thaliana]	65	50	54	29
AT1G64970	no change	-0.17129631448553145	-0.17949309003506303	AT1G64970	--	GO:0005634,nucleus; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010189,vitamin E biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0050342,tocopherol O-methyltransferase activity; GO:0071704,organic substance metabolic process;	E2.1.1.95; tocopherol O-methyltransferase [EC:2.1.1.95]; K05928;	NP_176677.1 gamma-tocopherol methyltransferase [Arabidopsis thaliana]	377	381	235	207
AT1G65520	no change	0.7239264121983284	-0.7052124127380022	AT1G65520	--	GO:0003824,catalytic activity; GO:0004165,delta(3)-delta(2)-enoyl-CoA isomerase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0009062,fatty acid catabolic process; GO:0016853,isomerase activity;	ECI1_2; Delta3-Delta2-enoyl-CoA isomerase [EC:5.3.3.8]; K07517;	NP_176730.1 delta(3), delta(2)-enoyl CoA isomerase 1 [Arabidopsis thaliana]	22	29	12	9
AT1G65960	no change	0.6894879290913966	-0.4603118865532808	AT1G65960	--	GO:0003824,catalytic activity; GO:0004351,glutamate decarboxylase activity; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006536,glutamate metabolic process; GO:0006538,glutamate catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0016831,carboxy-lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030170,pyridoxal phosphate binding;	E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase [EC:4.1.1.15]; K01580;	NP_001319328.1 glutamate decarboxylase 2 [Arabidopsis thaliana]	1876	1804	947	818
AT1G65970	no change	-0.2778742139481618	-0.21843927077063877	AT1G65970	--	GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0008379,thioredoxin peroxidase activity; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0034599,cellular response to oxidative stress; GO:0042744,hydrogen peroxide catabolic process; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	PRXII; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]; K24140;	NP_176772.1 thioredoxin-dependent peroxidase 2 [Arabidopsis thaliana]	61	55	37	29
AT1G66130	no change	0.11184612338615052	-0.7235832546405974	AT1G66130	--	GO:0000166,nucleotide binding; GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_176787.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	56	72	24	27
AT1G66510	no change	0.6624054955785348	0.6503398645778539	AT1G66510	--	GO:0000244,spliceosomal tri-snRNP complex assembly;	--	NP_001323254.1 AAR2 protein family [Arabidopsis thaliana]	21	21	31	14
AT1G66520	no change	0.6734968135372545	0.1354261035391329	AT1G66520	--	GO:0003824,catalytic activity; GO:0004479,methionyl-tRNA formyltransferase activity; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0009058,biosynthetic process; GO:0016740,transferase activity; GO:0016742,hydroxymethyl-, formyl- and related transferase activity; GO:0071951,conversion of methionyl-tRNA to N-formyl-methionyl-tRNA;	MTFMT, fmt; methionyl-tRNA formyltransferase [EC:2.1.2.9]; K00604;	NP_176825.1 formyltransferase [Arabidopsis thaliana]	19	22	22	9
AT1G66830	no change	-0.12733186643322825	0.6394224676994876	AT1G66830	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane;	--	NP_176855.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	11	4	8	7
AT1G66880	no change	0.5381966106099787	0.1375501069846046	AT1G66880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding;	--	NP_176860.2 Protein kinase superfamily protein [Arabidopsis thaliana]	44	24	18	29
AT1G66900	no change	-0.2765918628713633	-0.5996479878672943	AT1G66900	--	GO:0008474,palmitoyl-(protein) hydrolase activity; GO:0098734,macromolecule depalmitoylation;	--	NP_176862.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	57	97	35	33
AT1G67090	no change	-0.7193319897011979	-0.1996781645476591	AT1G67090	--	GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016984,ribulose-bisphosphate carboxylase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0022626,cytosolic ribosome; GO:0031969,chloroplast membrane; GO:0031977,thylakoid lumen; GO:0048046,apoplast; GO:0110102,ribulose bisphosphate carboxylase complex assembly; GO:1901149,salicylic acid binding;	rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]; K01602;	NP_176880.1 ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]	50026	39712	27807	23450
AT1G67360	no change	0.14918400059911915	-0.3297233669907193	AT1G67360	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0005811,lipid droplet; GO:0009555,pollen development; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0071456,cellular response to hypoxia; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation;	--	NP_176904.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana]	296	273	174	127
AT1G67440	no change	0.9980012009151092	-0.7220981341912752	AT1G67440	--	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005739,mitochondrion; GO:0009658,chloroplast organization; GO:0016787,hydrolase activity; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis; GO:0046872,metal ion binding;	rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]; K06949;	NP_001322691.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	33	47	15	17
AT1G67940	no change	0.6246171214885191	-0.23417958562988625	AT1G67940	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0035435,phosphate ion transmembrane transport;	--	NP_176961.1 non-intrinsic ABC protein 3 [Arabidopsis thaliana]	83	68	49	36
AT1G67950	no change	0.109275925864563	-0.43877927789944526	AT1G67950	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0034051,negative regulation of plant-type hypersensitive response; GO:0050832,defense response to fungus;	--	NP_564915.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	123	87	42	57
AT1G68290	no change	0.07548557876098268	-0.28970757033495637	AT1G68290	--	GO:0000014,single-stranded DNA endodeoxyribonuclease activity; GO:0003676,nucleic acid binding; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004521,endoribonuclease activity; GO:0006308,DNA catabolic process; GO:0008309,double-stranded DNA exodeoxyribonuclease activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0043765,T/G mismatch-specific endonuclease activity; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	E3.1.30.1; nuclease S1 [EC:3.1.30.1]; K05986;	NP_176996.1 endonuclease 2 [Arabidopsis thaliana]	67	44	36	24
AT1G68400	no change	0.9546568291073502	-0.2047862582512136	AT1G68400	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_177007.1 leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	142	111	72	71
AT1G68520	no change	0.5407175025732182	0.29901788186360784	AT1G68520	CO-like	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_564932.1 B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]	86	88	89	55
AT1G68530	no change	-0.2200397450957441	-0.05934435156327564	AT1G68530	--	GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009826,unidimensional cell growth; GO:0010025,wax biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_177020.1 3-ketoacyl-CoA synthase 6 [Arabidopsis thaliana]	3656	2811	2356	1744
AT1G68560	no change	-0.4296900689615055	-0.24887112355460536	AT1G68560	--	GO:0000272,polysaccharide catabolic process; GO:0003824,catalytic activity; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0010411,xyloglucan metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0061634,alpha-D-xyloside xylohydrolase; GO:0071555,cell wall organization; GO:0080176,xyloglucan 1,6-alpha-xylosidase activity;	XYL1; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]; K15925;	NP_177023.1 alpha-xylosidase 1 [Arabidopsis thaliana]	4820	4333	2812	2277
AT1G68585	no change	-0.10106211604374792	0.3833908873137179	AT1G68585	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_564933.1 hypothetical protein AT1G68585 [Arabidopsis thaliana]	6	7	10	2
AT1G68590	no change	-0.35011220653555863	-0.12843880915957895	AT1G68590	--	GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0032544,plastid translation; GO:1990904,ribonucleoprotein complex;	--	NP_564934.1 Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]	272	289	215	131
AT1G69010	no change	-0.499389862503678	-0.4909275560706071	AT1G69010	bHLH	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0042802,identical protein binding; GO:0046983,protein dimerization activity;	--	NP_177064.1 BES1-interacting Myc-like protein 2 [Arabidopsis thaliana]	53	51	38	13
AT1G69070	no change	0.32921938543476514	0.3992618439375242	AT1G69070	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0030490,maturation of SSU-rRNA; GO:0030692,Noc4p-Nop14p complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	--	NP_177070.1 nucleolar-like protein [Arabidopsis thaliana]	201	165	165	151
AT1G69210	no change	0.7126213398605892	-0.4208966723976328	AT1G69210	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0042274,ribosomal small subunit biogenesis;	--	NP_564954.1 Uncharacterized protein family UPF0090 [Arabidopsis thaliana]	26	12	8	10
AT1G69330	no change	-0.09092313364547516	-0.27630277263261455	AT1G69330	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0140096,catalytic activity, acting on a protein;	--	NP_564959.1 RING/U-box superfamily protein [Arabidopsis thaliana]	20	19	10	11
AT1G69370	no change	0.885777585642332	-0.1370144261805053	AT1G69370	--	GO:0000162,tryptophan biosynthetic process; GO:0003824,catalytic activity; GO:0004106,chorismate mutase activity; GO:0005737,cytoplasm; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016853,isomerase activity; GO:0042742,defense response to bacterium; GO:0042803,protein homodimerization activity; GO:0044281,small molecule metabolic process; GO:0046417,chorismate metabolic process; GO:1901747,prephenate(2-) biosynthetic process;	E5.4.99.5; chorismate mutase [EC:5.4.99.5]; K01850;	NP_177096.1 chorismate mutase 3 [Arabidopsis thaliana]	57	47	22	38
AT1G69380	no change	0.45054701638079847	0.3770465712313943	AT1G69380	--	GO:0005739,mitochondrion; GO:0007049,cell cycle; GO:0010082,regulation of root meristem growth; GO:0010822,positive regulation of mitochondrion organization; GO:0016020,membrane; GO:0030308,negative regulation of cell growth; GO:0031966,mitochondrial membrane; GO:0032875,regulation of DNA endoreduplication; GO:0051302,regulation of cell division; GO:0051781,positive regulation of cell division;	--	NP_564963.1 sporulation protein (DUF155) [Arabidopsis thaliana]	49	52	32	52
AT1G69570	no change	0.345909871337317	0.3724781538132173	AT1G69570	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development; GO:0046872,metal ion binding; GO:0048577,negative regulation of short-day photoperiodism, flowering; GO:0048579,negative regulation of long-day photoperiodism, flowering;	--	NP_177116.1 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	44	24	30	27
AT1G69690	no change	0.3860726772803706	-0.07227734542453071	AT1G69690	TCP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0009735,response to cytokinin; GO:0010229,inflorescence development; GO:0010252,auxin homeostasis; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0042023,DNA endoreduplication; GO:0043565,sequence-specific DNA binding; GO:0048467,gynoecium development; GO:0051301,cell division; GO:0080086,stamen filament development;	--	NP_564973.1 TCP family transcription factor [Arabidopsis thaliana]	170	121	108	75
AT1G69890	no change	-0.9155585564669302	-0.3000886082441789	AT1G69890	--	GO:0071456,cellular response to hypoxia; GO:0071731,response to nitric oxide;	--	NP_564980.1 actin cross-linking protein (DUF569) [Arabidopsis thaliana]	69	88	46	39
AT1G69910	no change	0.519024915724921	-0.14587453506308623	AT1G69910	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_177149.2 Protein kinase superfamily protein [Arabidopsis thaliana]	226	143	110	106
AT1G70060	no change	0.0155653327797067	0.44260078056334295	AT1G70060	--	GO:0000118,histone deacetylase complex; GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000785,chromatin; GO:0003714,transcription corepressor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016575,histone deacetylation;	SIN3A; paired amphipathic helix protein Sin3a; K11644;	NP_001323064.1 SIN3-like 4 [Arabidopsis thaliana]	143	95	149	69
AT1G70340	no change	0.04436712150259467	0.7711964661796468	AT1G70340	--	GO:0003674,molecular_function; GO:0005874,microtubule; GO:0008150,biological_process;	--	NP_177191.1 dicer-like protein (DUF936) [Arabidopsis thaliana]	29	14	23	24
AT1G70370	no change	-0.13070687118643673	0.13064512299238293	AT1G70370	--	GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009827,plant-type cell wall modification; GO:0042547,cell wall modification involved in multidimensional cell growth; GO:0048046,apoplast;	--	NP_001185361.1 polygalacturonase 2 [Arabidopsis thaliana]	1208	1100	927	744
AT1G70480	no change	0.6871989086000048	-0.3946078483471076	AT1G70480	--	GO:0005261,cation channel activity; GO:0009507,chloroplast; GO:0009695,jasmonic acid biosynthetic process; GO:0009707,chloroplast outer membrane; GO:0034220,ion transmembrane transport; GO:0098655,cation transmembrane transport;	--	NP_564989.1 OBP32pep, putative (DUF220) [Arabidopsis thaliana]	76	61	40	29
AT1G70490	no change	0.6544600905736833	-0.5936911597043866	AT1G70490	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0015031,protein transport; GO:0016004,phospholipase activator activity; GO:0016192,vesicle-mediated transport; GO:0050790,regulation of catalytic activity;	ARF1_2; ADP-ribosylation factor 1/2; K07937;	NP_001323060.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]	929	768	409	332
AT1G70760	no change	0.20703288657695185	0.5252121340417658	AT1G70760	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010258,NADH dehydrogenase complex (plastoquinone) assembly; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0016655,oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; GO:0042651,thylakoid membrane; GO:0048038,quinone binding;	--	NP_177233.1 inorganic carbon transport protein-like protein [Arabidopsis thaliana]	51	27	25	45
AT1G70770	no change	-0.9292460488014808	-0.11611934872722302	AT1G70770	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane;	--	NP_001185367.1 transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Arabidopsis thaliana]	1611	1393	1056	782
AT1G70890	no change	0.10586319789232244	0.5254583807115039	AT1G70890	--	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006952,defense response; GO:0009507,chloroplast;	--	NP_177245.1 MLP-like protein 43 [Arabidopsis thaliana]	21	30	21	27
AT1G70940	no change	-0.4005771126601957	0.1789491885862475	AT1G70940	--	GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0009416,response to light stimulus; GO:0009606,tropism; GO:0009630,gravitropism; GO:0009734,auxin-activated signaling pathway; GO:0009926,auxin polar transport; GO:0009958,positive gravitropism; GO:0009986,cell surface; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0012506,vesicle membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016328,lateral plasma membrane; GO:0048364,root development; GO:0048766,root hair initiation; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0060918,auxin transport;	--	NP_177250.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	286	251	225	177
AT1G71100	no change	-0.03122111793168548	-0.21203739296152743	AT1G71100	--	GO:0004751,ribose-5-phosphate isomerase activity; GO:0005737,cytoplasm; GO:0006098,pentose-phosphate shunt; GO:0009052,pentose-phosphate shunt, non-oxidative branch; GO:0016853,isomerase activity; GO:0030244,cellulose biosynthetic process; GO:0046109,uridine biosynthetic process;	rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]; K01807;	NP_177266.1 Ribose 5-phosphate isomerase, type A protein [Arabidopsis thaliana]	115	131	76	65
AT1G71130	no change	-0.974913007256042	-0.02812328909226984	AT1G71130	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway;	--	NP_565012.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	40	27	29	15
AT1G71180	no change	0.08964021171699098	-0.04949514636421432	AT1G71180	--	GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding;	HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020;	NP_565014.1 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	34	54	36	22
AT1G71190	no change	0.5744042111326504	-0.8120600626935537	AT1G71190	--	GO:0006665,sphingolipid metabolic process; GO:0006672,ceramide metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	--	NP_177275.1 senescence associated gene 18 [Arabidopsis thaliana]	68	37	22	17
AT1G71480	no change	0.4047811705494492	0.6612277087211279	AT1G71480	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane;	--	NP_177304.1 Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]	22	18	35	9
AT1G71730	no change	-0.7045643359445299	0.6869462501674345	AT1G71730	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009651,response to salt stress; GO:0043966,histone H3 acetylation; GO:0045815,epigenetic maintenance of chromatin in transcription-competent conformation;	--	NP_177318.1 hypothetical protein AT1G71730 [Arabidopsis thaliana]	30	45	50	32
AT1G72150	no change	-0.23671896738410295	-0.35994378748091727	AT1G72150	--	GO:0002020,protease binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0008289,lipid binding; GO:0009506,plasmodesma; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0048046,apoplast; GO:0051301,cell division; GO:1901149,salicylic acid binding;	--	NP_177360.1 PATELLIN 1 [Arabidopsis thaliana]	1880	2016	1116	902
AT1G72180	no change	-0.6828807997726922	-0.00650984496074435	AT1G72180	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006970,response to osmotic stress; GO:0010555,response to mannitol; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0017046,peptide hormone binding; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0042277,peptide binding; GO:0048831,regulation of shoot system development; GO:0090548,response to nitrate starvation; GO:1902025,nitrate import; GO:2000280,regulation of root development;	--	NP_177363.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	238	202	139	146
AT1G72190	no change	-0.30971901229175175	-0.9274340364590316	AT1G72190	--	GO:0008863,formate dehydrogenase (NAD+) activity; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0051287,NAD binding;	--	NP_177364.2 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	29	20	10	7
AT1G72370	no change	0.8104328125106212	0.02338056795671994	AT1G72370	--	GO:0000028,ribosomal small subunit assembly; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0006970,response to osmotic stress; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0015935,small ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-SAe, RPSA; small subunit ribosomal protein SAe; K02998;	NP_177381.1 40s ribosomal protein SA [Arabidopsis thaliana]	2317	2233	1816	1272
AT1G72610	no change	-0.6092511397343678	-0.2792250188585607	AT1G72610	--	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0030145,manganese ion binding; GO:0031012,extracellular matrix; GO:0046872,metal ion binding; GO:0048046,apoplast;	--	NP_177405.1 germin-like protein 1 [Arabidopsis thaliana]	1495	1532	953	710
AT1G72660	no change	0.5089267384557977	-0.8733151189509011	AT1G72660	--	GO:0000166,nucleotide binding; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0016787,hydrolase activity; GO:0019003,GDP binding;	K06944; uncharacterized protein; K06944;	NP_001031270.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	125	122	31	55
AT1G72790	no change	0.11024661264954556	-0.2400103891215087	AT1G72790	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_177422.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	47	39	21	26
AT1G72810	no change	0.3446090691719373	0.23522460795359149	AT1G72810	--	GO:0003824,catalytic activity; GO:0004795,threonine synthase activity; GO:0005737,cytoplasm; GO:0006520,cellular amino acid metabolic process; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009088,threonine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016829,lyase activity; GO:0019344,cysteine biosynthetic process; GO:0030170,pyridoxal phosphate binding;	thrC; threonine synthase [EC:4.2.3.1]; K01733;	NP_565047.1 Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]	214	181	166	140
AT1G72860	no change	-0.7257085447640044	-0.3850539796828949	AT1G72860	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0007165,signal transduction; GO:0010942,positive regulation of cell death; GO:0016020,membrane; GO:0043531,ADP binding;	--	NP_177429.2 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	13	11	6	6
AT1G73190	no change	-0.26272257693507306	0.24982561083900628	AT1G73190	--	GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006833,water transport; GO:0006914,autophagy; GO:0009705,plant-type vacuole membrane; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042807,central vacuole; GO:0055085,transmembrane transport;	--	NP_177462.1 Aquaporin-like superfamily protein [Arabidopsis thaliana]	13	3	6	6
AT1G73220	no change	0.08621219117124405	-0.6441780200175531	AT1G73220	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0010150,leaf senescence; GO:0015226,carnitine transmembrane transporter activity; GO:0015839,cadaverine transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902603,carnitine transmembrane transport;	--	NP_565059.2 organic cation/carnitine transporter1 [Arabidopsis thaliana]	390	399	212	128
AT1G74060	no change	-0.11416654912168084	0.4600212737189752	AT1G74060	--	GO:0000027,ribosomal large subunit assembly; GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L6e, RPL6; large subunit ribosomal protein L6e; K02934;	NP_177546.1 Ribosomal protein L6 family protein [Arabidopsis thaliana]	1364	1281	1266	1128
AT1G74070	no change	-0.7086258703932983	-0.4601355961995609	AT1G74070	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016853,isomerase activity;	--	NP_565079.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	45	42	24	18
AT1G74310	no change	-0.9623234765289356	0.5158128841883804	AT1G74310	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009408,response to heat; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016887,ATP hydrolysis activity; GO:0034605,cellular response to heat; GO:0043335,protein unfolding; GO:0045727,positive regulation of translation; GO:0071456,cellular response to hypoxia;	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB; K03695;	NP_565083.1 heat shock protein 101 [Arabidopsis thaliana]	58	49	51	49
AT1G74420	no change	0.00111289006935465	-0.437808282227152	AT1G74420	--	GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0008107,galactoside 2-alpha-L-fucosyltransferase activity; GO:0008417,fucosyltransferase activity; GO:0009969,xyloglucan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0032580,Golgi cisterna membrane; GO:0042546,cell wall biogenesis; GO:0071555,cell wall organization;	--	NP_001320577.1 fucosyltransferase 3 [Arabidopsis thaliana]	43	47	29	16
AT1G74440	no change	0.6321207248072847	0.0127181097091785	AT1G74440	--	GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0046521,sphingoid catabolic process; GO:0102672,fatty acid alpha-oxygenase activity;	--	NP_001322683.1 ER membrane protein, putative (DUF962) [Arabidopsis thaliana]	8	6	9	1
AT1G74470	no change	-0.3138856887746858	-0.33244695650872186	AT1G74470	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010189,vitamin E biosynthetic process; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016628,oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; GO:0031969,chloroplast membrane; GO:0045550,geranylgeranyl reductase activity; GO:0102067,geranylgeranyl diphosphate reductase activity;	chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]; K10960;	CAA74372.1 geranylgeranyl reductase, partial [Arabidopsis thaliana]	8491	6419	4326	3456
AT1G74540	no change	0.7909671077084203	-0.9860069413872222	AT1G74540	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072532,tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity; GO:0072550,triferuloylspermidine meta-hydroxylase activity; GO:0072551,diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0072552,monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0080088,spermidine hydroxycinnamate conjugate biosynthetic process;	CYP98A8; cytochrome P450 family 98 subfamily A polypeptide 8 [EC:1.14.13.-]; K15506;	NP_177594.1 cytochrome P450, family 98, subfamily A, polypeptide 8 [Arabidopsis thaliana]	717	530	226	187
AT1G74590	no change	-0.36474125486114206	-0.07757996226165366	AT1G74590	--	GO:0004364,glutathione transferase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006749,glutathione metabolic process; GO:0009407,toxin catabolic process; GO:0009636,response to toxic substance; GO:0016740,transferase activity;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_177598.1 glutathione S-transferase TAU 10 [Arabidopsis thaliana]	13	2	5	4
AT1G74740	no change	-0.19247048422850943	-0.3411817617276096	AT1G74740	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_177612.2 calcium-dependent protein kinase 30 [Arabidopsis thaliana]	92	94	46	50
AT1G74910	no change	-0.11282307747240349	-0.1792885983793504	AT1G74910	--	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0009058,biosynthetic process; GO:0016779,nucleotidyltransferase activity; GO:0046686,response to cadmium ion; GO:2000082,regulation of L-ascorbic acid biosynthetic process;	GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K00966;	NP_177629.1 ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana]	290	285	225	119
AT1G75080	no change	-0.3733315420832393	0.01663199923306515	AT1G75080	BES1	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0045892,negative regulation of DNA-templated transcription; GO:0048316,seed development; GO:0048481,plant ovule development;	BZR1_2; brassinosteroid resistant 1/2; K14503;	NP_565099.1 Brassinosteroid signaling positive regulator (BZR1) family protein [Arabidopsis thaliana]	71	59	55	33
AT1G75240	no change	0.6526117293012401	0.2606090647463102	AT1G75240	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0042803,protein homodimerization activity; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_565106.1 homeobox protein 33 [Arabidopsis thaliana]	61	78	55	55
AT1G75310	no change	0.6796304025481422	0.10428185540483234	AT1G75310	--	--	--	NP_177666.1 auxin-like 1 protein [Arabidopsis thaliana]	112	135	87	88
AT1G75330	no change	-0.5106074418926753	-0.33751658736754475	AT1G75330	--	GO:0004585,ornithine carbamoyltransferase activity; GO:0006520,cellular amino acid metabolic process; GO:0006526,arginine biosynthetic process; GO:0006591,ornithine metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016597,amino acid binding; GO:0016740,transferase activity; GO:0016743,carboxyl- or carbamoyltransferase activity; GO:0019240,citrulline biosynthetic process; GO:0042450,arginine biosynthetic process via ornithine; GO:0043231,intracellular membrane-bounded organelle;	OTC, argF, argI; ornithine carbamoyltransferase [EC:2.1.3.3]; K00611;	NP_177667.1 ornithine carbamoyltransferase [Arabidopsis thaliana]	463	450	298	187
AT1G75450	no change	0.5662505088853877	0.583924971483408	AT1G75450	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009690,cytokinin metabolic process; GO:0009823,cytokinin catabolic process; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding;	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279;	NP_177678.2 cytokinin oxidase 5 [Arabidopsis thaliana]	79	54	74	57
AT1G75540	no change	0.28647083692557573	0.7379755876085768	AT1G75540	DBB	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009640,photomorphogenesis; GO:0009641,shade avoidance; GO:0010117,photoprotection; GO:0046872,metal ion binding; GO:1905157,positive regulation of photosynthesis;	--	NP_177686.1 salt tolerance homolog2 [Arabidopsis thaliana]	60	12	31	43
AT1G76050	no change	0.8022032818674121	-0.07839069208791333	AT1G76050	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0006364,rRNA processing; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_974151.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	23	40	21	19
AT1G76060	no change	-0.3242131887039811	0.6060776014312302	AT1G76060	--	GO:0003674,molecular_function; GO:0005759,mitochondrial matrix; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0034551,mitochondrial respiratory chain complex III assembly;	--	NP_177733.2 LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]	41	24	38	27
AT1G76100	no change	0.3984838315464084	-0.7686596536237649	AT1G76100	--	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046872,metal ion binding;	petE; plastocyanin; K02638;	NP_001321069.1 plastocyanin 1 [Arabidopsis thaliana]	181	167	74	61
AT1G76140	no change	-0.6307196153804379	-0.09932960198773802	AT1G76140	--	GO:0004252,serine-type endopeptidase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0070012,oligopeptidase activity;	PREP; prolyl oligopeptidase [EC:3.4.21.26]; K01322;	NP_001117606.1 Prolyl oligopeptidase family protein [Arabidopsis thaliana]	406	331	244	208
AT1G76150	no change	0.6573191920310546	-0.17469435625907184	AT1G76150	--	GO:0003857,3-hydroxyacyl-CoA dehydrogenase activity; GO:0004300,enoyl-CoA hydratase activity; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0016491,oxidoreductase activity; GO:0016829,lyase activity; GO:0033542,fatty acid beta-oxidation, unsaturated, even number; GO:0044594,17-beta-hydroxysteroid dehydrogenase (NAD+) activity; GO:0080023,3R-hydroxyacyl-CoA dehydratase activity;	ECH2; peroxisomal enoyl-CoA hydratase 2 [EC:4.2.1.119]; K19658;	NP_177742.2 enoyl-CoA hydratase 2 [Arabidopsis thaliana]	423	412	265	224
AT1G76180	no change	0.9688992472088278	-0.6640472134499177	AT1G76180	--	GO:0001786,phosphatidylserine binding; GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0008289,lipid binding; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009507,chloroplast; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031210,phosphatidylcholine binding; GO:0044183,protein folding chaperone; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0051179,localization; GO:0090559,regulation of membrane permeability;	--	NP_001185408.1 Dehydrin family protein [Arabidopsis thaliana]	3966	3847	1910	1378
AT1G76390	no change	0.499723230127553	0.17066119767685486	AT1G76390	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_001077833.1 ARM repeat superfamily protein [Arabidopsis thaliana]	118	102	104	62
AT1G76400	no change	0.980053368369098	0.29046736052446603	AT1G76400	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0008250,oligosaccharyltransferase complex; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0018279,protein N-linked glycosylation via asparagine;	OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I); K12666;	NP_177766.1 Ribophorin I [Arabidopsis thaliana]	371	319	319	240
AT1G76460	no change	-0.04436239738674948	0.5327280784008469	AT1G76460	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0008150,biological_process; GO:0030154,cell differentiation;	--	NP_565132.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	15	8	19	4
AT1G76690	no change	0.5202180442243413	-0.5048366231442296	AT1G76690	--	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009611,response to wounding; GO:0009695,jasmonic acid biosynthetic process; GO:0010181,FMN binding; GO:0016491,oxidoreductase activity; GO:0016629,12-oxophytodienoate reductase activity; GO:0031408,oxylipin biosynthetic process;	OPR; 12-oxophytodienoic acid reductase [EC:1.3.1.42]; K05894;	NP_177795.1 12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	37	28	16	14
AT1G76700	no change	-0.36245699470344994	-0.5015639891842829	AT1G76700	--	GO:0003674,molecular_function;	--	NP_177796.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	48	36	16	22
AT1G76780	no change	0.1541505815036502	-0.2991422175329352	AT1G76780	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001321288.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]	17	0	7	2
AT1G76850	no change	0.5313390266911023	-0.10920007477742372	AT1G76850	--	GO:0000145,exocyst; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006887,exocytosis; GO:0006893,Golgi to plasma membrane transport; GO:0009506,plasmodesma; GO:0060321,acceptance of pollen; GO:0070062,extracellular exosome;	EXOC2, SEC5; exocyst complex component 2; K17637;	NP_177811.2 exocyst complex component sec5 [Arabidopsis thaliana]	346	362	247	190
AT1G76860	no change	-0.5514454305612458	0.5817107093261371	AT1G76860	--	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000398,mRNA splicing, via spliceosome; GO:0000932,P-body; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005688,U6 snRNP; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0033962,P-body assembly; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:0120114,Sm-like protein family complex; GO:0120115,Lsm2-8 complex; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex;	LSM3; U6 snRNA-associated Sm-like protein LSm3; K12622;	NP_177812.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	46	75	43	74
AT1G76880	no change	-0.824112672974607	0.5234919131751292	AT1G76880	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010192,mucilage biosynthetic process; GO:0019760,glucosinolate metabolic process;	--	NP_177814.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	131	80	109	89
AT1G76890	no change	-0.9108599150966978	0.23692032268554203	AT1G76890	Trihelix	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_177815.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	106	125	119	66
AT1G76990	no change	-0.8216763971654212	0.5119546074251448	AT1G76990	--	GO:0005829,cytosol; GO:0016597,amino acid binding;	--	NP_001031289.1 ACT domain repeat 3 [Arabidopsis thaliana]	347	330	343	294
AT1G77120	no change	-0.7593776788310372	-0.20009774944619255	AT1G77120	--	GO:0000166,nucleotide binding; GO:0001666,response to hypoxia; GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006970,response to osmotic stress; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009413,response to flooding; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0031000,response to caffeine; GO:0032355,response to estradiol; GO:0042542,response to hydrogen peroxide; GO:0042803,protein homodimerization activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity; GO:0071456,cellular response to hypoxia; GO:1900039,positive regulation of cellular response to hypoxia;	ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1]; K18857;	NP_177837.1 alcohol dehydrogenase 1 [Arabidopsis thaliana]	125	161	64	97
AT1G77240	no change	0.6634624414677376	0.46061416176374775	AT1G77240	--	GO:0003674,molecular_function; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0008150,biological_process; GO:0016874,ligase activity;	--	NP_177848.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	15	25	15	21
AT1G77710	no change	-0.5427994660330402	0.6176818503530205	AT1G77710	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0071569,protein ufmylation; GO:1990592,protein K69-linked ufmylation;	--	NP_177894.1 ubiquitin-fold modifier [Arabidopsis thaliana]	172	164	208	137
AT1G77990	no change	0.4328937744987093	-0.19417036098912335	AT1G77990	--	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_565165.2 STAS domain / Sulfate transporter family [Arabidopsis thaliana]	47	51	21	34
AT1G78050	no change	0.6100160959113271	-0.25375802251386204	AT1G78050	--	GO:0003824,catalytic activity; GO:0004619,phosphoglycerate mutase activity; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010167,response to nitrate; GO:0016853,isomerase activity; GO:0016868,intramolecular transferase activity, phosphotransferases; GO:0080033,response to nitrite;	PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]; K01834;	NP_177928.2 phosphoglycerate/bisphosphoglycerate mutase [Arabidopsis thaliana]	153	187	109	82
AT1G78140	no change	-0.44923918628059617	-0.08567134921270318	AT1G78140	--	GO:0005739,mitochondrion; GO:0006744,ubiquinone biosynthetic process; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_565170.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	726	654	473	386
AT1G78190	no change	0.13535064707987354	0.20043686293245397	AT1G78190	--	GO:0005515,protein binding; GO:0018364,peptidyl-glutamine methylation; GO:0030488,tRNA methylation; GO:0046982,protein heterodimerization activity; GO:0070476,rRNA (guanine-N7)-methylation;	--	NP_177943.1 Trm112p-like protein [Arabidopsis thaliana]	17	43	21	25
AT1G78210	no change	0.6529081640794288	-0.08738603765400892	AT1G78210	--	GO:0003674,molecular_function; GO:0003824,catalytic activity;	--	NP_565173.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	444	374	298	213
AT1G78270	no change	-0.492794785591256	-0.21907377091708505	AT1G78270	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_177950.1 UDP-glucosyl transferase 85A4 [Arabidopsis thaliana]	11	10	7	5
AT1G78280	no change	0.6777432535803306	-0.09171595718251065	AT1G78280	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_177951.6 transferases, transferring glycosyl groups [Arabidopsis thaliana]	119	162	100	77
AT1G78290	no change	0.2049645655716578	0.5702978310334809	AT1G78290	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006970,response to osmotic stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1]; K14498;	NP_001077839.1 Protein kinase superfamily protein [Arabidopsis thaliana]	12	7	8	10
AT1G78570	no change	-0.3995944509170128	-0.5882750913186308	AT1G78570	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008152,metabolic process; GO:0008460,dTDP-glucose 4,6-dehydratase activity; GO:0009225,nucleotide-sugar metabolic process; GO:0009506,plasmodesma; GO:0010253,UDP-rhamnose biosynthetic process; GO:0010280,UDP-L-rhamnose synthase activity; GO:0010315,auxin export across the plasma membrane; GO:0016491,oxidoreductase activity; GO:0016829,lyase activity; GO:0016853,isomerase activity; GO:0030154,cell differentiation; GO:0042127,regulation of cell population proliferation; GO:0050377,UDP-glucose 4,6-dehydratase activity; GO:0051555,flavonol biosynthetic process; GO:0071555,cell wall organization;	RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76]; K12450;	NP_177978.1 rhamnose biosynthesis 1 [Arabidopsis thaliana]	2784	2612	1283	1086
AT1G78580	no change	-0.3897579951329587	0.3734316714495533	AT1G78580	--	GO:0003824,catalytic activity; GO:0003825,alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005991,trehalose metabolic process; GO:0005992,trehalose biosynthetic process; GO:0009793,embryo development ending in seed dormancy; GO:0009832,plant-type cell wall biogenesis; GO:0010182,sugar mediated signaling pathway; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0048364,root development; GO:0048574,long-day photoperiodism, flowering; GO:0051301,cell division; GO:0070413,trehalose metabolism in response to stress; GO:0080186,developmental vegetative growth;	TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]; K16055;	NP_001319403.1 trehalose-6-phosphate synthase [Arabidopsis thaliana]	257	163	224	137
AT1G78820	no change	0.13372804766172616	0.5096600767096277	AT1G78820	--	GO:0005576,extracellular region; GO:0030246,carbohydrate binding; GO:0048046,apoplast;	--	NP_178003.1 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein [Arabidopsis thaliana]	268	255	268	224
AT1G78830	no change	0.22003965795969663	-0.3832379837831977	AT1G78830	--	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_565191.1 Curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana]	255	279	149	123
AT1G78890	no change	-0.15599505360541874	-0.0480223956852483	AT1G78890	--	--	--	NP_001319410.1 hypothetical protein AT1G78890 [Arabidopsis thaliana]	256	222	157	146
AT1G78895	no change	0.36938140083225207	-0.3472929828828112	AT1G78895	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane;	--	NP_565194.1 Reticulon family protein [Arabidopsis thaliana]	19	13	12	5
AT1G78910	no change	0.5639381819869533	0.18629001492274355	AT1G78910	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0005739,mitochondrion; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_178012.2 Pseudouridine synthase family protein [Arabidopsis thaliana]	12	7	2	11
AT1G79110	no change	-0.2578478083421766	0.7251327867790514	AT1G79110	--	GO:0004842,ubiquitin-protein transferase activity; GO:0006952,defense response; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043067,regulation of programmed cell death; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding;	--	NP_974174.1 zinc ion binding protein [Arabidopsis thaliana]	70	54	55	76
AT1G79200	no change	-0.2886923972195265	0.1401464255337405	AT1G79200	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0007049,cell cycle; GO:0009734,auxin-activated signaling pathway; GO:0010928,regulation of auxin mediated signaling pathway; GO:0048467,gynoecium development; GO:0048479,style development; GO:0048480,stigma development; GO:0051301,cell division; GO:0051782,negative regulation of cell division; GO:0071365,cellular response to auxin stimulus;	--	NP_565201.1 splicing regulatory glutamine/lysine-rich-like protein [Arabidopsis thaliana]	32	19	22	15
AT1G79270	no change	0.11115558556357902	0.45009768703356606	AT1G79270	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_565205.1 evolutionarily conserved C-terminal region 8 [Arabidopsis thaliana]	45	58	52	42
AT1G79280	no change	-0.10721330504584713	0.3636007423365109	AT1G79280	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006406,mRNA export from nucleus; GO:0006606,protein import into nucleus; GO:0009506,plasmodesma; GO:0009910,negative regulation of flower development; GO:0015031,protein transport; GO:0016020,membrane; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0017056,structural constituent of nuclear pore; GO:0031965,nuclear membrane; GO:0033234,negative regulation of protein sumoylation; GO:0048443,stamen development; GO:0051028,mRNA transport;	TPR, MLP1, MLP2; nucleoprotein TPR; K09291;	NP_178048.2 nuclear pore anchor [Arabidopsis thaliana]	579	481	487	410
AT1G79380	no change	0.7533688229248278	0.12438777589718925	AT1G79380	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009611,response to wounding; GO:0009867,jasmonic acid mediated signaling pathway; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0070534,protein K63-linked ubiquitination;	--	NP_565206.1 Ca(2)-dependent phospholipid-binding protein (Copine) family [Arabidopsis thaliana]	111	114	86	76
AT1G79390	no change	0.00529406183118281	0.4120395486454189	AT1G79390	--	GO:0003674,molecular_function;	--	NP_565207.1 centrosomal protein [Arabidopsis thaliana]	40	25	39	19
AT1G79510	no change	-0.3783341979898239	-0.4453618251068897	AT1G79510	--	GO:0004930,G protein-coupled receptor activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0007189,adenylate cyclase-activating G protein-coupled receptor signaling pathway; GO:0019222,regulation of metabolic process;	--	NP_565211.1 hypothetical protein (DUF2358) [Arabidopsis thaliana]	11	33	17	6
AT1G79620	no change	0.2353291351850173	-0.7154623992906982	AT1G79620	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0051512,positive regulation of unidimensional cell growth; GO:1901347,negative regulation of secondary cell wall biogenesis;	--	NP_001321900.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	108	117	61	32
AT1G79670	no change	0.67514285195405	0.5015780462154394	AT1G79670	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0009620,response to fungus; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding; GO:0106310,protein serine kinase activity;	--	NP_178085.1 Wall-associated kinase family protein [Arabidopsis thaliana]	25	18	17	22
AT1G79710	no change	-0.46476705159972015	-0.3998898559142605	AT1G79710	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_001322738.1 Major facilitator superfamily protein [Arabidopsis thaliana]	19	18	18	2
AT1G79780	no change	0.20754706282361063	-0.7336564892679113	AT1G79780	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_178096.2 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	23	32	17	6
AT1G79810	no change	0.24452449208690377	-0.35070008603209735	AT1G79810	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005829,cytosol; GO:0006513,protein monoubiquitination; GO:0006635,fatty acid beta-oxidation; GO:0007031,peroxisome organization; GO:0009506,plasmodesma; GO:0009640,photomorphogenesis; GO:0016020,membrane; GO:0016558,protein import into peroxisome matrix; GO:0046872,metal ion binding;	PEX2, PXMP3; peroxin-2; K06664;	NP_974183.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	47	18	19	14
AT1G79820	no change	0.03713884891169752	0.2964152955353118	AT1G79820	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008643,carbohydrate transport; GO:0008645,hexose transmembrane transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015149,hexose transmembrane transporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport;	--	NP_001185440.1 Major facilitator superfamily protein [Arabidopsis thaliana]	84	82	85	52
AT1G79870	no change	-0.18175193845429397	-0.2720495048556975	AT1G79870	--	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008465,glycerate dehydrogenase activity; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0047995,hydroxyphenylpyruvate reductase activity; GO:0051287,NAD binding; GO:1901149,salicylic acid binding;	HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]; K15919;	NP_178105.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	364	309	189	176
AT1G79900	no change	0.05792196056791481	0.13701527192343377	AT1G79900	--	GO:0000064,L-ornithine transmembrane transporter activity; GO:0005290,L-histidine transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006561,proline biosynthetic process; GO:0006972,hyperosmotic response; GO:0015189,L-lysine transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0061459,L-arginine transmembrane transporter activity; GO:0089709,L-histidine transmembrane transport; GO:1903352,L-ornithine transmembrane transport; GO:1903401,L-lysine transmembrane transport; GO:1903826,L-arginine transmembrane transport;	SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29; K15109;	NP_178108.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	53	61	49	35
AT1G80160	no change	0.45168952496486703	0.36022510836055904	AT1G80160	--	GO:0016829,lyase activity;	--	NP_001320354.1 Lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]	107	77	70	82
AT1G80180	no change	-0.3203694464632851	-0.05835393650315763	AT1G80180	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0010375,stomatal complex patterning;	--	NP_565233.1 hypothetical protein AT1G80180 [Arabidopsis thaliana]	20	35	32	6
AT1G80780	no change	0.32415471670059615	0.1642534109360514	AT1G80780	--	GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_178193.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	33	36	42	12
AT1G80920	no change	0.0425258895388796	-0.2645378499176804	AT1G80920	--	GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma;	--	NP_178207.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	431	377	261	186
AT1G80930	no change	0.5983800080462405	0.28154971741624896	AT1G80930	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0006417,regulation of translation; GO:0071013,catalytic step 2 spliceosome;	--	NP_178208.1 MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana]	324	337	329	211
AT2G01080	no change	-0.7175904094909731	0.19937108690990005	AT2G01080	--	GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_565250.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	22	18	10	19
AT2G01340	no change	0.11331110760550134	0.9291405476573638	AT2G01340	--	GO:0005575,cellular_component; GO:0009620,response to fungus; GO:0009624,response to nematode;	--	NP_178243.2 plastid movement impaired protein [Arabidopsis thaliana]	14	15	22	15
AT2G01350	no change	0.11576918211797438	0.00435025596986571	AT2G01350	--	GO:0004514,nicotinate-nucleotide diphosphorylase (carboxylating) activity; GO:0005737,cytoplasm; GO:0009435,NAD biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016763,pentosyltransferase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0034213,quinolinate catabolic process;	nadC, QPRT; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]; K00767;	NP_565259.1 quinolinate phoshoribosyltransferase [Arabidopsis thaliana]	204	172	155	97
AT2G01410	no change	-0.50196212202024	0.686548650147748	AT2G01410	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_178250.1 NHL domain-containing protein [Arabidopsis thaliana]	218	152	234	160
AT2G01420	no change	0.8378093895803913	-0.4255758185427304	AT2G01420	--	GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0009630,gravitropism; GO:0009734,auxin-activated signaling pathway; GO:0009926,auxin polar transport; GO:0010015,root morphogenesis; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0048364,root development; GO:0055085,transmembrane transport; GO:0060918,auxin transport;	--	NP_565261.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	137	113	64	58
AT2G01630	no change	0.37509426763388903	0.7409692098566295	AT2G01630	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	GN1_2_3; glucan endo-1,3-beta-glucosidase 1/2/3 [EC:3.2.1.39]; K19891;	NP_565269.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	50	39	60	39
AT2G01680	no change	0.10571075002103722	-0.22511517340453227	AT2G01680	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008157,protein phosphatase 1 binding; GO:0016020,membrane; GO:0019888,protein phosphatase regulator activity; GO:0035304,regulation of protein dephosphorylation; GO:0050790,regulation of catalytic activity;	--	NP_565274.1 Ankyrin repeat family protein [Arabidopsis thaliana]	54	60	42	24
AT2G01735	no change	0.15809709264737098	-0.25027828370331473	AT2G01735	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_001325257.1 RING-finger protein for embryogenesi [Arabidopsis thaliana]	26	18	12	12
AT2G01750	no change	-0.4866083276686535	0.4135607625256408	AT2G01750	--	GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0008017,microtubule binding;	--	NP_178284.1 microtubule-associated proteins 70-3 [Arabidopsis thaliana]	86	100	86	78
AT2G01870	no change	0.3297813041164038	-0.6086415084365844	AT2G01870	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_565278.1 transmembrane protein [Arabidopsis thaliana]	7	12	8	1
AT2G02080	no change	0.11473619901258562	0.49796997662729425	AT2G02080	C2H2	GO:0002221,pattern recognition receptor signaling pathway; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008356,asymmetric cell division; GO:0009507,chloroplast; GO:0009536,plastid; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048364,root development;	--	NP_001325405.1 indeterminate(ID)-domain 4 [Arabidopsis thaliana]	30	27	18	33
AT2G02450	no change	-0.6423615417079102	0.2156779875187934	AT2G02450	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development;	--	NP_565284.3 NAC domain containing protein 35 [Arabidopsis thaliana]	20	26	16	19
AT2G02720	no change	0.2255440617370272	-0.5817178890164442	AT2G02720	--	GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding;	pel; pectate lyase [EC:4.2.2.2]; K01728;	NP_178375.1 Pectate lyase family protein [Arabidopsis thaliana]	46	53	24	20
AT2G03390	no change	0.05926876656662781	0.04262897801511305	AT2G03390	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009840,chloroplastic endopeptidase Clp complex;	--	NP_001325260.1 uvrB/uvrC motif-containing protein [Arabidopsis thaliana]	66	42	47	27
AT2G03450	no change	-0.4050897048159787	0.9370975963661452	AT2G03450	--	GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	ACP7; acid phosphatase type 7; K22390;	NP_178444.1 purple acid phosphatase 9 [Arabidopsis thaliana]	23	11	22	20
AT2G03680	no change	0.20748632449546467	-0.21719853345328147	AT2G03680	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005819,spindle; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0009826,unidimensional cell growth; GO:0010005,cortical microtubule, transverse to long axis; GO:0043622,cortical microtubule organization; GO:0051211,anisotropic cell growth; GO:0055028,cortical microtubule; GO:0071472,cellular response to salt stress;	--	NP_001154491.1 spiral1 [Arabidopsis thaliana]	461	382	275	205
AT2G03690	no change	0.5251777675066003	0.7494770646541787	AT2G03690	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006744,ubiquinone biosynthetic process; GO:0016020,membrane; GO:0031314,extrinsic component of mitochondrial inner membrane;	COQ4; ubiquinone biosynthesis protein COQ4; K18586;	NP_178465.1 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein [Arabidopsis thaliana]	123	97	122	119
AT2G03750	no change	-0.48218723872256536	-0.565859732245099	AT2G03750	--	GO:0005737,cytoplasm; GO:0008146,sulfotransferase activity; GO:0016740,transferase activity; GO:0051923,sulfation;	--	NP_565305.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	131	83	66	31
AT2G03760	no change	0.17483424202959197	0.6652480714532102	AT2G03760	--	GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006952,defense response; GO:0008146,sulfotransferase activity; GO:0009651,response to salt stress; GO:0009751,response to salicylic acid; GO:0016131,brassinosteroid metabolic process; GO:0016740,transferase activity; GO:0051923,sulfation; GO:0080118,brassinosteroid sulfotransferase activity; GO:1990135,flavonoid sulfotransferase activity;	--	NP_178471.1 sulfotransferase 12 [Arabidopsis thaliana]	23	29	25	29
AT2G04280	no change	0.01707054503203251	-0.7627426014579712	AT2G04280	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0016020,membrane;	--	NP_565310.1 calcium ion-binding protein [Arabidopsis thaliana]	557	469	205	191
AT2G04378	no change	0.05976862341546348	0.3239100713570345	AT2G04378	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001118266.1 Beta-galactosidase related protein [Arabidopsis thaliana]	39	43	47	23
AT2G04850	no change	-0.02286372490006034	0.6382306849972169	AT2G04850	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_565316.1 Auxin-responsive family protein [Arabidopsis thaliana]	65	39	35	66
AT2G04880	no change	0.07638277189558176	-0.15478355803971444	AT2G04880	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009751,response to salicylic acid; GO:0009863,salicylic acid mediated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding;	WRKY1; WRKY transcription factor 1; K18834;	NP_849936.1 zinc-dependent activator protein-1 [Arabidopsis thaliana]	179	145	113	80
AT2G04890	no change	0.45020609168063175	0.6271303914623919	AT2G04890	GRAS	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_178566.1 SCARECROW-like 21 [Arabidopsis thaliana]	14	10	17	8
AT2G05310	no change	-0.26954350890471646	-0.10293176793870629	AT2G05310	--	GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_565324.1 transmembrane protein [Arabidopsis thaliana]	5	11	5	5
AT2G05380	no change	0.34892257043622665	-0.4622445440395776	AT2G05380	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion;	--	NP_001324794.1 glycine-rich protein 3 short isoform [Arabidopsis thaliana]	45	38	29	12
AT2G05790	no change	0.45381984770750883	-0.06348687555559442	AT2G05790	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_178637.2 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	1039	1127	796	589
AT2G05810	no change	-0.6260037753288764	0.19665308665133105	AT2G05810	--	GO:0005515,protein binding;	--	NP_178638.1 ARM repeat superfamily protein [Arabidopsis thaliana]	54	58	51	35
AT2G06990	no change	-0.02827709270649878	0.7126138159384748	AT2G06990	--	GO:0000166,nucleotide binding; GO:0000460,maturation of 5.8S rRNA; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006397,mRNA processing; GO:0006401,RNA catabolic process; GO:0009908,flower development; GO:0010093,specification of floral organ identity; GO:0016070,RNA metabolic process; GO:0016607,nuclear speck; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0060149,negative regulation of post-transcriptional gene silencing;	MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]; K12598;	NP_565338.1 RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana]	231	220	249	236
AT2G11910	no change	0.8945214282897239	0.0848531259707621	AT2G11910	--	GO:0009941,chloroplast envelope;	--	NP_565354.1 hypothetical protein AT2G11910 [Arabidopsis thaliana]	645	508	421	379
AT2G13360	no change	-0.5417671082009021	-0.1353289817702081	AT2G13360	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004760,serine-pyruvate transaminase activity; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008453,alanine-glyoxylate transaminase activity; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009853,photorespiration; GO:0016740,transferase activity; GO:0019265,glycine biosynthetic process, by transamination of glyoxylate; GO:0048046,apoplast; GO:0050281,serine-glyoxylate transaminase activity;	AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]; K00830;	NP_001318216.1 alanine:glyoxylate aminotransferase [Arabidopsis thaliana]	1444	1268	925	710
AT2G13610	no change	0.4447131832292287	0.03606310222275277	AT2G13610	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_178984.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	128	145	112	76
AT2G14890	no change	-0.6771359516284076	-0.4425226928891434	AT2G14890	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_179095.1 arabinogalactan protein 9 [Arabidopsis thaliana]	1105	1100	606	472
AT2G15320	no change	-0.31503529289236626	0.01182406200398217	AT2G15320	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0005886,plasma membrane;	--	NP_179134.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	284	217	183	149
AT2G15580	no change	0.08823987289084527	0.45009025880034154	AT2G15580	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_565376.1 RING/U-box superfamily protein [Arabidopsis thaliana]	113	121	126	88
AT2G15690	no change	-0.8204834553070747	0.10750564142545156	AT2G15690	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0043231,intracellular membrane-bounded organelle;	--	NP_565377.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	300	222	218	154
AT2G15910	no change	0.28268657238487027	0.1867958275270452	AT2G15910	--	GO:0002098,tRNA wobble uridine modification; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005829,cytosol; GO:0017183,peptidyl-diphthamide biosynthetic process from peptidyl-histidine; GO:0046872,metal ion binding;	--	NP_179191.1 CSL zinc finger domain-containing protein [Arabidopsis thaliana]	54	61	37	48
AT2G15960	no change	0.00518507791250312	0.6350862886589128	AT2G15960	--	GO:0005575,cellular_component;	--	NP_565384.1 stress-induced protein [Arabidopsis thaliana]	17	20	25	14
AT2G15970	no change	0.2814440592408877	-0.4558994280428169	AT2G15970	--	GO:0000325,plant-type vacuole; GO:0005886,plasma membrane; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042631,cellular response to water deprivation;	--	NP_179196.1 cold regulated 413 plasma membrane 1 [Arabidopsis thaliana]	1304	1342	766	526
AT2G16600	no change	0.6904979289120587	0.02791149207475333	AT2G16600	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0007165,signal transduction; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_001318231.1 rotamase CYP 3 [Arabidopsis thaliana]	10897	9006	7259	6079
AT2G16630	no change	0.17319249663920047	0.04825876310229091	AT2G16630	--	GO:0003674,molecular_function; GO:0010374,stomatal complex development;	--	NP_179254.2 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	201	158	170	81
AT2G17150	no change	0.2270776341093295	0.4241027748198969	AT2G17150	Nin-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription;	--	NP_001324424.1 Plant regulator RWP-RK family protein [Arabidopsis thaliana]	57	28	46	29
AT2G17500	no change	-0.20613934566418957	-0.10596673952582504	AT2G17500	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010252,auxin homeostasis; GO:0010311,lateral root formation; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0040009,regulation of growth rate; GO:0055085,transmembrane transport; GO:0080162,endoplasmic reticulum to cytosol auxin transport;	--	NP_001031363.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	68	92	63	38
AT2G17972	no change	-0.23728261004989956	0.6875874124536354	AT2G17972	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_565430.1 transmembrane protein [Arabidopsis thaliana]	22	28	31	23
AT2G18280	no change	0.23711425975467848	-0.25025801269796333	AT2G18280	--	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006355,regulation of DNA-templated transcription; GO:0009536,plastid; GO:0009620,response to fungus;	TULP1; tubby-related protein 1; K19600;	NP_001031369.1 tubby like protein 2 [Arabidopsis thaliana]	29	14	16	8
AT2G18270	no change	-0.7893769925394816	-0.8994960053627661	AT2G18270	--	--	--	NP_179419.1 hypothetical protein AT2G18270 [Arabidopsis thaliana]	24	5	11	0
AT2G18290	no change	-0.6306047889290295	0.5387696121221367	AT2G18290	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0007049,cell cycle; GO:0010087,phloem or xylem histogenesis; GO:0016567,protein ubiquitination; GO:0016604,nuclear body; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0032875,regulation of DNA endoreduplication; GO:0032876,negative regulation of DNA endoreduplication; GO:0051301,cell division; GO:0070979,protein K11-linked ubiquitination;	APC10, DOC1; anaphase-promoting complex subunit 10; K03357;	NP_565433.1 anaphase promoting complex 10 [Arabidopsis thaliana]	27	21	26	20
AT2G18400	no change	0.3914539394762589	0.42750355009592544	AT2G18400	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L6, MRPL6, rplF; large subunit ribosomal protein L6; K02933;	NP_565438.1 ribosomal protein L6 family protein [Arabidopsis thaliana]	52	43	56	30
AT2G18570	no change	-0.12778913098542838	-0.47757225824381655	AT2G18570	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_849978.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	33	44	26	12
AT2G19170	no change	0.1828879071934299	-0.1771816017537085	AT2G19170	--	GO:0004252,serine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_001324171.1 subtilisin-like serine protease 3 [Arabidopsis thaliana]	198	164	111	99
AT2G19480	no change	0.17663392004995998	0.3224851203744974	AT2G19480	--	GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006281,DNA repair; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0016444,somatic cell DNA recombination; GO:0042393,histone binding; GO:0042802,identical protein binding;	--	NP_001189553.1 nucleosome assembly protein 1;2 [Arabidopsis thaliana]	996	939	934	677
AT2G19570	no change	0.3666913967101797	-0.3372043392852298	AT2G19570	--	GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006216,cytidine catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0016787,hydrolase activity; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:0047844,deoxycytidine deaminase activity; GO:0071704,organic substance metabolic process;	cdd, CDA; cytidine deaminase [EC:3.5.4.5]; K01489;	NP_179547.1 cytidine deaminase 1 [Arabidopsis thaliana]	212	151	96	91
AT2G20180	no change	-0.4519885566381343	-0.5447956663556766	AT2G20180	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006783,heme biosynthetic process; GO:0009686,gibberellin biosynthetic process; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009959,negative gravitropism; GO:0010029,regulation of seed germination; GO:0010099,regulation of photomorphogenesis; GO:0010100,negative regulation of photomorphogenesis; GO:0010161,red light signaling pathway; GO:0010187,negative regulation of seed germination; GO:0010313,phytochrome binding; GO:0015995,chlorophyll biosynthetic process; GO:0042802,identical protein binding; GO:0046983,protein dimerization activity;	--	NP_001323903.1 phytochrome interacting factor 3-like 5 [Arabidopsis thaliana]	18	13	8	6
AT2G20270	no change	-0.5117158212807291	0.15266987330764695	AT2G20270	--	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015038,glutathione disulfide oxidoreductase activity; GO:0034599,cellular response to oxidative stress; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	--	NP_179617.1 Thioredoxin superfamily protein [Arabidopsis thaliana]	167	204	172	107
AT2G20650	no change	0.2307845473951012	-0.29309616870086497	AT2G20650	--	GO:0004842,ubiquitin-protein transferase activity; GO:0009827,plant-type cell wall modification; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_179657.2 RING/U-box superfamily protein [Arabidopsis thaliana]	27	24	18	10
AT2G20700	no change	0.7802705316891752	-0.4800322557752215	AT2G20700	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0090406,pollen tube; GO:1903427,negative regulation of reactive oxygen species biosynthetic process;	--	NP_179662.2 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 [Arabidopsis thaliana]	37	36	21	14
AT2G20900	no change	-0.4189517581558722	-0.430248312161995	AT2G20900	--	GO:0000166,nucleotide binding; GO:0004143,diacylglycerol kinase activity; GO:0005524,ATP binding; GO:0006952,defense response; GO:0007165,signal transduction; GO:0007205,protein kinase C-activating G protein-coupled receptor signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	dgkA, DGK; diacylglycerol kinase (ATP) [EC:2.7.1.107]; K00901;	NP_001031381.1 diacylglycerol kinase 5 [Arabidopsis thaliana]	157	157	99	58
AT2G20950	no change	-0.3178116698183362	0.4746614546710616	AT2G20950	--	GO:0003674,molecular_function;	--	NP_001325011.1 phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]	36	26	44	15
AT2G21185	no change	0.9273548986582008	0.4697110160506237	AT2G21185	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_565500.1 transmembrane protein [Arabidopsis thaliana]	15	14	17	10
AT2G21250	no change	0.14634409783186292	-0.3842462267998913	AT2G21250	--	GO:0004032,alditol:NADP+ 1-oxidoreductase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0047641,aldose-6-phosphate reductase (NADPH) activity;	--	NP_179721.1 NAD(P)-linked oxidoreductase superfamily protein [Arabidopsis thaliana]	679	557	345	279
AT2G21280	no change	0.6698609159104264	-0.5141804754778455	AT2G21280	--	GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0042803,protein homodimerization activity;	K07071; uncharacterized protein; K07071;	NP_001324767.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	143	123	74	50
AT2G21540	no change	0.00591577626912907	-0.3777086083442326	AT2G21540	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009908,flower development; GO:0015031,protein transport; GO:0016020,membrane;	--	NP_001031389.1 SEC14-like 3 [Arabidopsis thaliana]	172	192	117	72
AT2G21660	no change	-0.5444289736907373	0.1511439792095864	AT2G21660	--	GO:0000380,alternative mRNA splicing, via spliceosome; GO:0002376,immune system process; GO:0003676,nucleic acid binding; GO:0003690,double-stranded DNA binding; GO:0003697,single-stranded DNA binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0006406,mRNA export from nucleus; GO:0006858,extracellular transport; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0007623,circadian rhythm; GO:0008380,RNA splicing; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0010043,response to zinc ion; GO:0010119,regulation of stomatal movement; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010501,RNA secondary structure unwinding; GO:0032508,DNA duplex unwinding; GO:0035197,siRNA binding; GO:0035198,miRNA binding; GO:0045087,innate immune response; GO:0050658,RNA transport; GO:0050688,regulation of defense response to virus; GO:1990428,miRNA transport;	--	NP_179760.1 cold, circadian rhythm, and rna binding 2 [Arabidopsis thaliana]	13696	13343	11607	8420
AT2G21940	no change	0.532977557762054	0.35093024719527843	AT2G21940	--	GO:0000166,nucleotide binding; GO:0004765,shikimate kinase activity; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009423,chorismate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019632,shikimate metabolic process; GO:0046872,metal ion binding;	aroK, aroL; shikimate kinase [EC:2.7.1.71]; K00891;	NP_001077938.1 shikimate kinase 1 [Arabidopsis thaliana]	67	28	47	32
AT2G21960	no change	-0.11762097225904028	-0.0861205430467665	AT2G21960	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0016020,membrane;	--	NP_565523.1 transmembrane protein [Arabidopsis thaliana]	88	111	84	44
AT2G21970	no change	-0.9084966213001628	-0.6739094316690833	AT2G21970	--	GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009611,response to wounding; GO:0009765,photosynthesis, light harvesting; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0071486,cellular response to high light intensity; GO:0071492,cellular response to UV-A;	--	NP_565524.1 stress enhanced protein 2 [Arabidopsis thaliana]	206	171	93	64
AT2G22010	no change	0.29836225167600827	0.30443563452745454	AT2G22010	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0009615,response to virus; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0030163,protein catabolic process; GO:0046872,metal ion binding; GO:0051603,proteolysis involved in protein catabolic process; GO:0051726,regulation of cell cycle; GO:0061630,ubiquitin protein ligase activity; GO:2000060,positive regulation of ubiquitin-dependent protein catabolic process;	--	NP_001189573.1 related to KPC1 [Arabidopsis thaliana]	146	147	133	107
AT2G22080	no change	-0.6395159575567644	-0.4570487523499498	AT2G22080	--	GO:0005634,nucleus; GO:0006979,response to oxidative stress;	--	NP_179799.2 transmembrane protein [Arabidopsis thaliana]	200	202	117	79
AT2G22795	no change	0.08874225149328677	-0.4304414268532467	AT2G22795	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network;	--	NP_850032.1 hypothetical protein AT2G22795 [Arabidopsis thaliana]	528	443	262	213
AT2G22990	no change	-0.2349131983707713	0.09825198990096698	AT2G22990	--	GO:0004185,serine-type carboxypeptidase activity; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0009698,phenylpropanoid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0016754,sinapoylglucose-malate O-sinapoyltransferase activity; GO:0019748,secondary metabolic process; GO:0047158,sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity; GO:0099503,secretory vesicle;	SCPL8, SNG1; serine carboxypeptidase-like 8 [EC:3.4.16.- 2.3.1.92]; K09757;	NP_001154529.1 sinapoylglucose 1 [Arabidopsis thaliana]	510	575	477	306
AT2G23080	no change	0.5698691171821584	0.11086704342780154	AT2G23080	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005956,protein kinase CK2 complex; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006468,protein phosphorylation; GO:0007623,circadian rhythm; GO:0010225,response to UV-C; GO:0010332,response to gamma radiation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0018107,peptidyl-threonine phosphorylation; GO:0042752,regulation of circadian rhythm; GO:0051726,regulation of cell cycle; GO:0106310,protein serine kinase activity; GO:2001020,regulation of response to DNA damage stimulus;	CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]; K03097;	NP_179890.1 Protein kinase superfamily protein [Arabidopsis thaliana]	78	101	81	50
AT2G23090	no change	0.28710334237705615	0.7436288978863435	AT2G23090	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_565547.1 Uncharacterized protein family SERF [Arabidopsis thaliana]	150	208	235	169
AT2G23200	no change	0.3976768429770058	0.22937516781807868	AT2G23200	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation;	--	NP_179901.1 Protein kinase superfamily protein [Arabidopsis thaliana]	44	79	47	49
AT2G23450	no change	0.8033057901507777	-0.3513199157060419	AT2G23450	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_565552.1 Protein kinase superfamily protein [Arabidopsis thaliana]	108	119	69	50
AT2G23460	no change	-0.3207829173025864	0.22447007312809136	AT2G23460	--	GO:0000166,nucleotide binding; GO:0001664,G protein-coupled receptor binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005834,heterotrimeric G-protein complex; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0007188,adenylate cyclase-modulating G protein-coupled receptor signaling pathway; GO:0019001,guanyl nucleotide binding; GO:0031683,G-protein beta/gamma-subunit complex binding; GO:0046872,metal ion binding;	--	NP_565553.1 extra-large G-protein 1 [Arabidopsis thaliana]	131	101	113	68
AT2G23470	no change	0.11474152244882138	-0.7815763011506781	AT2G23470	--	GO:0009507,chloroplast; GO:0016020,membrane; GO:0048653,anther development;	--	NP_179928.2 root UVB sensitive protein (Protein of unknown function, DUF647) [Arabidopsis thaliana]	9	14	5	4
AT2G23740	no change	-0.4420243312679617	0.07627206830831175	AT2G23740	--	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0008168,methyltransferase activity; GO:0008270,zinc ion binding; GO:0016740,transferase activity; GO:0018024,histone-lysine N-methyltransferase activity; GO:0032259,methylation; GO:0034968,histone lysine methylation; GO:0043565,sequence-specific DNA binding; GO:0045814,negative regulation of gene expression, epigenetic; GO:0046872,metal ion binding; GO:1900109,regulation of histone H3-K9 dimethylation;	--	NP_001189585.1 histone-lysine N-methyltransferase SUVR5 [Arabidopsis thaliana]	138	123	107	76
AT2G23755	no change	-0.06065178540101942	0.7988232849264904	AT2G23755	--	GO:0016020,membrane;	--	NP_850043.2 transmembrane family 220 helix protein [Arabidopsis thaliana]	6	5	9	4
AT2G23760	no change	0.5631627536774637	0.5646639313448197	AT2G23760	TALE	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009965,leaf morphogenesis; GO:0016020,membrane; GO:0048363,mucilage pectin metabolic process;	--	AAK43834.1 BEL1-like homeobox 4 [Arabidopsis thaliana]	40	29	37	30
AT2G23945	no change	0.4969982890215834	-0.8294420169713378	AT2G23945	--	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity;	--	NP_565559.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	8	11	3	4
AT2G24180	no change	0.08083091991484923	0.09603222896896252	AT2G24180	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042430,indole-containing compound metabolic process; GO:0046872,metal ion binding;	--	NP_179995.1 cytochrome p450 71b6 [Arabidopsis thaliana]	82	90	77	47
AT2G24190	no change	0.4036243275999249	0.3863159682934475	AT2G24190	--	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0008106,alcohol dehydrogenase (NADP+) activity; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;	E1.1.1.208; (+)-neomenthol dehydrogenase [EC:1.1.1.208]; K15095;	NP_179996.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	18	17	10	19
AT2G24350	no change	0.5368579905056928	-0.4489794079922296	AT2G24350	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008143,poly(A) binding; GO:0043488,regulation of mRNA stability; GO:0046872,metal ion binding; GO:1900364,negative regulation of mRNA polyadenylation;	--	NP_180012.2 RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	11	14	11	2
AT2G24540	no change	0.3412886987136207	0.6720813339964032	AT2G24540	--	GO:0005515,protein binding; GO:0009585,red, far-red light phototransduction; GO:0010017,red or far-red light signaling pathway; GO:0016567,protein ubiquitination;	--	NP_565572.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	6	19	19	9
AT2G24820	no change	0.18772116872811423	-0.5544381117021536	AT2G24820	--	GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010277,chlorophyllide a oxygenase [overall] activity; GO:0015031,protein transport; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0045036,protein targeting to chloroplast; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	--	OAP11518.1 hypothetical protein AXX17_AT2G20590 [Arabidopsis thaliana]	564	432	247	199
AT2G24830	no change	-0.2989528293304691	-0.4288524892915939	AT2G24830	C3H	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0008150,biological_process; GO:0046872,metal ion binding;	--	NP_180056.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [Arabidopsis thaliana]	19	17	6	11
AT2G25050	no change	0.7569261169992032	-0.01193926384263554	AT2G25050	--	--	--	NP_001318287.1 actin-binding FH2 (formin 2) family protein [Arabidopsis thaliana]	77	50	38	43
AT2G25250	no change	-0.1772190882525426	-0.3142176020824743	AT2G25250	--	GO:0005515,protein binding;	--	NP_180097.1 serine/arginine repetitive matrix-like protein [Arabidopsis thaliana]	80	78	51	34
AT2G25270	no change	0.01005159847075139	0.05535278277027071	AT2G25270	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane;	--	NP_180099.2 transmembrane protein [Arabidopsis thaliana]	93	87	59	63
AT2G25450	no change	-0.21848290298449463	0.27169209525387	AT2G25450	--	GO:0005773,vacuole; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0010439,regulation of glucosinolate biosynthetic process; GO:0016491,oxidoreductase activity; GO:0019761,glucosinolate biosynthetic process; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0062131,3-butenylglucosinolate 2-hydroxylase activity;	--	NP_180115.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	226	225	231	136
AT2G25460	no change	-0.09056151044860544	0.5936171665012016	AT2G25460	--	--	--	NP_001325254.1 EEIG1/EHBP1 protein amino-terminal domain protein [Arabidopsis thaliana]	14	6	3	15
AT2G25660	no change	0.258162877727316	0.26587782244110175	AT2G25660	--	GO:0005515,protein binding; GO:0005887,integral component of plasma membrane; GO:0009306,protein secretion; GO:0009501,amyloplast; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009660,amyloplast organization; GO:0009706,chloroplast inner membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0031972,chloroplast intermembrane space;	--	NP_001324008.1 embryo defective 2410 [Arabidopsis thaliana]	49	31	30	32
AT2G25840	no change	0.21873738849953167	0.5640706178702232	AT2G25840	--	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004830,tryptophan-tRNA ligase activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006436,tryptophanyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009791,post-embryonic development; GO:0016740,transferase activity; GO:0016874,ligase activity; GO:0048481,plant ovule development; GO:0048608,reproductive structure development;	WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]; K01867;	NP_850070.1 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]	205	188	222	164
AT2G25900	no change	-0.355653172294054	-0.10679016737245416	AT2G25900	C3H	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0061157,mRNA destabilization;	--	NP_001189604.1 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]	238	245	130	161
AT2G25940	no change	0.0913380726160538	0.30345340924425873	AT2G25940	--	GO:0000326,protein storage vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0006624,vacuolar protein processing; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0110165,cellular anatomical entity;	LGMN; legumain [EC:3.4.22.34]; K01369;	NP_180165.1 alpha-vacuolar processing enzyme [Arabidopsis thaliana]	46	36	39	28
AT2G26110	no change	0.3624205417781752	-0.01577727757101494	AT2G26110	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_180180.3 bromodomain protein (DUF761) [Arabidopsis thaliana]	91	93	89	36
AT2G26190	no change	0.8349386256628187	0.2134713650363448	AT2G26190	--	GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0071456,cellular response to hypoxia;	--	NP_001324666.1 calmodulin-binding family protein [Arabidopsis thaliana]	45	19	32	17
AT2G26230	no change	0.6060964590380722	-0.04600675064925267	AT2G26230	--	GO:0004846,urate oxidase activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006144,purine nucleobase metabolic process; GO:0006145,purine nucleobase catabolic process; GO:0007031,peroxisome organization; GO:0016491,oxidoreductase activity; GO:0019628,urate catabolic process;	uaZ; urate oxidase [EC:1.7.3.3]; K00365;	NP_180191.1 uricase / urate oxidase / nodulin 35 [Arabidopsis thaliana]	254	207	151	141
AT2G26270	no change	0.41078467234590815	-0.05179224152400171	AT2G26270	--	--	--	NP_001318290.1 BRCT domain DNA repair protein [Arabidopsis thaliana]	35	28	22	18
AT2G26500	no change	-0.0984917126406457	-0.43491781312632743	AT2G26500	--	GO:0005777,peroxisome; GO:0009512,cytochrome b6f complex; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0019904,protein domain specific binding;	--	NP_565623.1 cytochrome b6f complex subunit (petM) [Arabidopsis thaliana]	412	382	201	185
AT2G26730	no change	-0.60422768468855	-0.6792406926917148	AT2G26730	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_180241.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	473	389	203	153
AT2G26920	no change	-0.7804360699477253	0.44100942724451314	AT2G26920	--	GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0006414,translational elongation;	--	NP_180260.1 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	104	103	107	80
AT2G27130	no change	-0.8836565393722832	0.2826000261067166	AT2G27130	--	GO:0003674,molecular_function; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_565637.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	43	37	29	34
AT2G27310	no change	0.39186207130578365	-0.5217880093994665	AT2G27310	--	GO:0005515,protein binding; GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_180299.1 F-box family protein [Arabidopsis thaliana]	28	34	17	12
AT2G27500	no change	-0.169049062867601	0.04453472014172863	AT2G27500	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_565652.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	16	24	17	11
AT2G27830	no change	0.48767989262364214	-0.38412964104710906	AT2G27830	--	--	--	NP_565660.1 hypothetical protein AT2G27830 [Arabidopsis thaliana]	19	25	15	8
AT2G27900	no change	-0.4447548377567785	0.30357421028223225	AT2G27900	--	GO:0000149,SNARE binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0032456,endocytic recycling; GO:0042147,retrograde transport, endosome to Golgi; GO:1990745,EARP complex;	--	NP_001031433.1 coiled-coil protein [Arabidopsis thaliana]	164	135	144	101
AT2G28470	no change	-0.9537449581384652	-0.4288847622009071	AT2G28470	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0048046,apoplast;	--	NP_001324192.1 beta-galactosidase 8 [Arabidopsis thaliana]	1283	1128	692	498
AT2G28720	no change	-0.07877438820032168	-0.19948990210528217	AT2G28720	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005777,peroxisome; GO:0006334,nucleosome assembly; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2B; histone H2B; K11252;	NP_180440.1 Histone superfamily protein [Arabidopsis thaliana]	48	67	42	26
AT2G28910	no change	-0.496075521185352	0.28314724518806955	AT2G28910	--	GO:0003676,nucleic acid binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_001323648.1 CAX interacting protein 4 [Arabidopsis thaliana]	832	585	579	542
AT2G29450	no change	0.7278460509077338	0.2058340955962733	AT2G29450	--	GO:0004364,glutathione transferase activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006749,glutathione metabolic process; GO:0006979,response to oxidative stress; GO:0009407,toxin catabolic process; GO:0009506,plasmodesma; GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0043295,glutathione binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_180506.1 glutathione S-transferase tau 5 [Arabidopsis thaliana]	187	198	174	123
AT2G29560	no change	0.2974033849820973	-0.02022082581368466	AT2G29560	--	GO:0000015,phosphopyruvate hydratase complex; GO:0000287,magnesium ion binding; GO:0004634,phosphopyruvate hydratase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006096,glycolytic process; GO:0016829,lyase activity; GO:0046872,metal ion binding;	ENO, eno; enolase [EC:4.2.1.11]; K01689;	NP_180516.1 cytosolic enolase [Arabidopsis thaliana]	123	137	102	70
AT2G29650	no change	-0.41340041789613985	-0.15489902897110502	AT2G29650	--	GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0006811,ion transport; GO:0006814,sodium ion transport; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009624,response to nematode; GO:0015293,symporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_180526.1 phosphate transporter 4;1 [Arabidopsis thaliana]	148	138	73	93
AT2G29960	no change	0.34193100159917805	-0.5982658286262615	AT2G29960	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005771,multivesicular body; GO:0005777,peroxisome; GO:0005783,endoplasmic reticulum; GO:0005795,Golgi stack; GO:0005829,cytosol; GO:0006457,protein folding; GO:0016018,cyclosporin A binding; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0061083,regulation of protein refolding; GO:0099503,secretory vesicle;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_001318316.1 cyclophilin 5 [Arabidopsis thaliana]	396	357	205	128
AT2G30040	no change	-0.07339667016314924	-0.5839860021750563	AT2G30040	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0009658,chloroplast organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019901,protein kinase binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046777,protein autophosphorylation;	--	NP_180565.1 mitogen-activated protein kinase kinase kinase 14 [Arabidopsis thaliana]	56	24	11	22
AT2G30260	no change	-0.10609718742478204	0.6351947894081056	AT2G30260	--	GO:0000354,cis assembly of pre-catalytic spliceosome; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005681,spliceosomal complex; GO:0005686,U2 snRNP; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0015030,Cajal body; GO:1990904,ribonucleoprotein complex;	SNRPB2; U2 small nuclear ribonucleoprotein B''; K11094;	NP_180585.1 U2 small nuclear ribonucleoprotein B [Arabidopsis thaliana]	34	82	55	65
AT2G30360	no change	-0.9135083762021776	-0.30147749170165494	AT2G30360	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0009268,response to pH; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050896,response to stimulus; GO:0051592,response to calcium ion; GO:0106310,protein serine kinase activity;	--	NP_180595.1 SOS3-interacting protein 4 [Arabidopsis thaliana]	93	85	50	45
AT2G30570	no change	-0.830005758771775	-0.6685566162255006	AT2G30570	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042549,photosystem II stabilization;	psbW; photosystem II PsbW protein; K02721;	NP_180615.1 photosystem II reaction center W [Arabidopsis thaliana]	2599	2382	1155	919
AT2G30860	no change	0.48414515289728505	0.4396009781555352	AT2G30860	--	GO:0000325,plant-type vacuole; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005507,copper ion binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009636,response to toxic substance; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0042221,response to chemical; GO:0043295,glutathione binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_180643.1 glutathione S-transferase PHI 9 [Arabidopsis thaliana]	914	1050	980	794
AT2G30930	no change	-0.8523035484628544	-0.7467318281403992	AT2G30930	--	GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0009507,chloroplast;	--	NP_565708.1 hypothetical protein AT2G30930 [Arabidopsis thaliana]	20	25	16	3
AT2G30950	no change	-0.46486720131327863	-0.08801877044339304	AT2G30950	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010205,photoinhibition; GO:0010206,photosystem II repair; GO:0010304,PSII associated light-harvesting complex II catabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0030163,protein catabolic process; GO:0031977,thylakoid lumen; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0048564,photosystem I assembly; GO:0072593,reactive oxygen species metabolic process;	--	NP_001323510.1 FtsH extracellular protease family [Arabidopsis thaliana]	1247	1341	858	753
AT2G31100	no change	0.7799114209322378	-0.4013848796256345	AT2G31100	--	--	--	NP_180668.6 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	55	32	24	19
AT2G31141	no change	-0.17867795718735835	0.08683305863801544	AT2G31141	--	--	--	NP_001118424.2 hypothetical protein AT2G31141 [Arabidopsis thaliana]	31	21	19	17
AT2G31380	no change	0.6085745251911596	-0.2932862768881031	AT2G31380	DBB	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009640,photomorphogenesis; GO:0010100,negative regulation of photomorphogenesis; GO:0046872,metal ion binding;	--	NP_565722.1 salt tolerance homologue [Arabidopsis thaliana]	76	69	53	27
AT2G31390	no change	-0.1423290173315517	-0.5133860524601732	AT2G31390	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006000,fructose metabolic process; GO:0008865,fructokinase activity; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019252,starch biosynthetic process; GO:0046835,carbohydrate phosphorylation;	E2.7.1.4, scrK; fructokinase [EC:2.7.1.4]; K00847;	NP_180697.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	989	887	467	399
AT2G31750	no change	-0.39797006520053696	-0.01760779485494837	AT2G31750	--	GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0009850,auxin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0052638,indole-3-butyrate beta-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_001325305.1 UDP-glucosyl transferase 74D1 [Arabidopsis thaliana]	78	102	61	57
AT2G31800	no change	0.1880884647370561	0.02704151698535046	AT2G31800	--	GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007229,integrin-mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0046777,protein autophosphorylation;	--	NP_180739.2 Integrin-linked protein kinase family [Arabidopsis thaliana]	21	51	28	22
AT2G31820	no change	-0.08539645544868349	0.6264425883798009	AT2G31820	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008157,protein phosphatase 1 binding; GO:0016020,membrane; GO:0019888,protein phosphatase regulator activity; GO:0035304,regulation of protein dephosphorylation; GO:0050790,regulation of catalytic activity;	--	NP_180741.1 Ankyrin repeat family protein [Arabidopsis thaliana]	82	63	75	71
AT2G31830	no change	0.5484097016921035	0.371615766450844	AT2G31830	--	GO:0003824,catalytic activity; GO:0004439,phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; GO:0004519,endonuclease activity; GO:0005515,protein binding; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0034485,phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046856,phosphatidylinositol dephosphorylation; GO:0046872,metal ion binding; GO:0052658,inositol-1,4,5-trisphosphate 5-phosphatase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	--	NP_180742.1 endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]	21	25	29	12
AT2G31880	no change	0.3123323475095181	0.0863734465449487	AT2G31880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0010942,positive regulation of cell death; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0031349,positive regulation of defense response; GO:0060862,negative regulation of floral organ abscission; GO:0106310,protein serine kinase activity;	--	KAG7638149.1 Leucine-rich repeat [Arabidopsis thaliana x Arabidopsis arenosa]	73	35	55	22
AT2G31900	no change	0.02408350307561036	-0.1606958586759745	AT2G31900	--	GO:0000146,microfilament motor activity; GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003779,actin binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0016459,myosin complex; GO:0016461,unconventional myosin complex; GO:0030048,actin filament-based movement; GO:0030050,vesicle transport along actin filament; GO:0031982,vesicle; GO:0051015,actin filament binding;	MYO5; myosin V; K10357;	NP_001323600.1 myosin-like protein XIF [Arabidopsis thaliana]	69	65	42	37
AT2G31990	no change	0.01935765303804503	-0.7450553150528016	AT2G31990	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_001324319.1 Exostosin family protein [Arabidopsis thaliana]	63	37	22	17
AT2G32400	no change	-0.28480207823049586	-0.35141466088670265	AT2G32400	--	GO:0005262,calcium channel activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0008066,glutamate receptor activity; GO:0009506,plasmodesma; GO:0015276,ligand-gated ion channel activity; GO:0016020,membrane; GO:0019722,calcium-mediated signaling; GO:0034220,ion transmembrane transport; GO:0038023,signaling receptor activity; GO:0070588,calcium ion transmembrane transport; GO:0071230,cellular response to amino acid stimulus;	--	NP_565744.1 glutamate receptor 5 [Arabidopsis thaliana]	32	38	28	10
AT2G32640	no change	0.11159033521354109	-0.6396442340652646	AT2G32640	--	GO:0009507,chloroplast;	--	NP_180823.3 Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]	45	64	32	16
AT2G32720	no change	-0.17694416115544093	-0.18451193734583624	AT2G32720	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane; GO:0020037,heme binding; GO:0042761,very long-chain fatty acid biosynthetic process; GO:0043231,intracellular membrane-bounded organelle; GO:0043447,alkane biosynthetic process; GO:0046872,metal ion binding;	CYB5; cytochrome b5; K23490;	NP_180831.1 cytochrome B5 isoform B [Arabidopsis thaliana]	359	319	228	168
AT2G32800	no change	0.2380119510059387	0.10208113159833232	AT2G32800	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:0071395,cellular response to jasmonic acid stimulus; GO:0071446,cellular response to salicylic acid stimulus; GO:0106310,protein serine kinase activity;	--	NP_180839.2 protein kinase family protein [Arabidopsis thaliana]	22	16	16	11
AT2G33050	no change	-0.22226287152673868	0.14599775282171237	AT2G33050	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	CAD5320203.1 unnamed protein product [Arabidopsis thaliana]	18	14	6	16
AT2G33400	no change	0.24605112149618985	-0.14596412844285625	AT2G33400	--	GO:0003674,molecular_function; GO:0007142,male meiosis II;	--	NP_180898.2 FK506-binding nuclear-like protein [Arabidopsis thaliana]	68	51	30	39
AT2G33490	no change	-0.455122388849014	-0.5909254995979331	AT2G33490	--	GO:0003674,molecular_function;	--	NP_001323890.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	21	23	14	6
AT2G33800	no change	-0.2605264883203064	-0.2470375861136977	AT2G33800	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005763,mitochondrial small ribosomal subunit; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009955,adaxial/abaxial pattern specification; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	RP-S5, MRPS5, rpsE; small subunit ribosomal protein S5; K02988;	NP_180936.1 Ribosomal protein S5 family protein [Arabidopsis thaliana]	359	325	200	179
AT2G33810	no change	-0.6340032167511259	0.26765436730665143	AT2G33810	SBP	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development; GO:0009911,positive regulation of flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010229,inflorescence development; GO:0010321,regulation of vegetative phase change; GO:0030154,cell differentiation; GO:0046872,metal ion binding;	--	NP_565771.1 squamosa promoter binding protein-like 3 [Arabidopsis thaliana]	95	83	81	61
AT2G33830	no change	-0.44281895599498056	0.5173673892850662	AT2G33830	--	GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0009617,response to bacterium;	--	NP_001318345.1 Dormancy/auxin associated family protein [Arabidopsis thaliana]	146	207	159	174
AT2G33850	no change	0.0891415173822437	0.2433371270023876	AT2G33850	--	GO:0008150,biological_process; GO:0071944,cell periphery;	--	NP_565775.1 E6-like protein [Arabidopsis thaliana]	179	143	160	95
AT2G34070	no change	0.3152685932123899	-0.3242975952217145	AT2G34070	--	GO:0005794,Golgi apparatus; GO:0009827,plant-type cell wall modification; GO:0009867,jasmonic acid mediated signaling pathway; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; GO:0043565,sequence-specific DNA binding;	--	NP_565779.1 TRICHOME BIREFRINGENCE-LIKE 37 [Arabidopsis thaliana]	37	28	29	7
AT2G34460	no change	-0.2516029549998971	-0.4344074647380829	AT2G34460	--	GO:0005783,endoplasmic reticulum; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule;	--	NP_565789.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	107	125	61	53
AT2G34470	no change	0.21844111309610545	-0.2614678735887488	AT2G34470	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0006807,nitrogen compound metabolic process; GO:0016151,nickel cation binding; GO:0043085,positive regulation of catalytic activity; GO:0043419,urea catabolic process; GO:0150006,urease activator complex; GO:1905182,positive regulation of urease activity;	ureG; urease accessory protein; K03189;	NP_180994.1 urease accessory protein G [Arabidopsis thaliana]	272	253	183	111
AT2G34490	no change	-0.695393053445622	0.19205060525746537	AT2G34490	--	GO:0000249,C-22 sterol desaturase activity; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016126,sterol biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	CYP710A; sterol 22-desaturase [EC:1.14.19.41]; K09832;	NP_180996.1 cytochrome P450, family 710, subfamily A, polypeptide 2 [Arabidopsis thaliana]	92	72	72	52
AT2G34560	no change	0.7501210481624571	-0.3389094121937779	AT2G34560	--	GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_565791.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	602	467	257	289
AT2G34930	no change	-0.4445557645741696	-0.1661901409110028	AT2G34930	--	GO:0002239,response to oomycetes; GO:0005515,protein binding; GO:0050832,defense response to fungus;	--	VYS54481.1 unnamed protein product [Arabidopsis thaliana]	69	61	34	41
AT2G35420	no change	-0.05224357293788796	-0.97379408464645	AT2G35420	--	GO:0003674,molecular_function; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_181085.2 RING/U-box superfamily protein [Arabidopsis thaliana]	45	35	16	11
AT2G35520	no change	0.19266959840071465	0.45264697383220653	AT2G35520	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0008250,oligosaccharyltransferase complex; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0060548,negative regulation of cell death;	OST2, DAD1; oligosaccharyltransferase complex subunit epsilon; K12668;	NP_001318358.1 Defender against death (DAD family) protein [Arabidopsis thaliana]	107	85	101	73
AT2G35940	no change	-0.8640873257516906	0.2779090231350507	AT2G35940	TALE	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009610,response to symbiotic fungus; GO:0009737,response to abscisic acid; GO:0010197,polar nucleus fusion; GO:0010201,response to continuous far red light stimulus by the high-irradiance response system; GO:0042803,protein homodimerization activity; GO:0046982,protein heterodimerization activity;	--	CAA0374919.1 unnamed protein product [Arabidopsis thaliana]	141	142	123	104
AT2G35960	no change	-0.7491671571165724	0.09448016836264628	AT2G35960	--	GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0098542,defense response to other organism;	--	NP_181140.1 NDR1/HIN1-like 12 [Arabidopsis thaliana]	89	41	45	44
AT2G36026	no change	0.2238567552031632	0.13383173598782788	AT2G36026	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001118449.1 Ovate family protein [Arabidopsis thaliana]	4	11	5	6
AT2G36120	no change	0.08989474128075178	-0.3297257925102366	AT2G36120	--	GO:0005576,extracellular region; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0048366,leaf development;	--	NP_181156.1 Glycine-rich protein family [Arabidopsis thaliana]	26	25	10	16
AT2G36360	no change	-0.14315392940501193	-0.06320126343596952	AT2G36360	--	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005515,protein binding; GO:0005802,trans-Golgi network; GO:0006886,intracellular protein transport;	--	NP_001031493.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	44	52	38	24
AT2G36380	no change	0.7768798791039596	0.3143389157552706	AT2G36380	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_181179.2 pleiotropic drug resistance 6 [Arabidopsis thaliana]	258	217	218	172
AT2G36400	no change	0.7321522353966096	0.01934334318418213	AT2G36400	GRF	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0008285,negative regulation of cell population proliferation; GO:0009409,response to cold; GO:0009624,response to nematode; GO:0009739,response to gibberellin; GO:0032502,developmental process; GO:0048364,root development; GO:0061062,regulation of nematode larval development; GO:0099402,plant organ development;	--	NP_181181.1 growth-regulating factor 3 [Arabidopsis thaliana]	44	47	27	33
AT2G36430	no change	-0.2622260065700278	0.02848802874768744	AT2G36430	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_181184.1 transmembrane protein, putative (DUF247) [Arabidopsis thaliana]	11	17	15	5
AT2G36470	no change	-0.3783128971397116	0.3210153831900845	AT2G36470	--	--	--	NP_565847.1 DUF868 family protein, putative (DUF868) [Arabidopsis thaliana]	15	11	10	11
AT2G36800	no change	0.6965748046375974	-0.25059765136481793	AT2G36800	--	GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016020,membrane; GO:0016131,brassinosteroid metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046527,glucosyltransferase activity; GO:0050403,trans-zeatin O-beta-D-glucosyltransferase activity; GO:0050502,cis-zeatin O-beta-D-glucosyltransferase activity; GO:0071456,cellular response to hypoxia; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0098754,detoxification;	UGT73C; UDP-glucosyltransferase 73C [EC:2.4.1.-]; K13496;	NP_181218.1 don-glucosyltransferase 1 [Arabidopsis thaliana]	28	18	7	17
AT2G36950	no change	0.22174048273709465	-0.07290174489394688	AT2G36950	--	GO:0005507,copper ion binding; GO:0046872,metal ion binding;	--	NP_565855.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]	96	130	91	55
AT2G37100	no change	-0.323917209051467	0.4163619532748262	AT2G37100	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_181247.1 protamine P1 family protein [Arabidopsis thaliana]	21	8	14	11
AT2G37190	no change	0.846724899270557	0.9453871379263004	AT2G37190	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0008270,zinc ion binding; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L12e, RPL12; large subunit ribosomal protein L12e; K02870;	NP_181256.1 Ribosomal protein L11 family protein [Arabidopsis thaliana]	983	846	1310	1019
AT2G37340	no change	-0.5284913008355583	0.7122395708254442	AT2G37340	--	GO:0000245,spliceosomal complex assembly; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0046872,metal ion binding;	SFRS7; splicing factor, arginine/serine-rich 7; K12896;	NP_850280.1 arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]	155	130	176	133
AT2G37360	no change	-0.17419663931346288	0.06906481021652722	AT2G37360	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_181272.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	17	17	15	9
AT2G37580	no change	-0.5373479374983657	0.2728462045610118	AT2G37580	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_565865.1 RING/U-box superfamily protein [Arabidopsis thaliana]	109	63	62	71
AT2G37630	no change	0.175714392553435	-0.34681909648719694	AT2G37630	MYB	GO:0000793,condensed chromosome; GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008356,asymmetric cell division; GO:0009615,response to virus; GO:0009908,flower development; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0009946,proximal/distal axis specification; GO:0009965,leaf morphogenesis; GO:0010338,leaf formation; GO:0042742,defense response to bacterium; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0045088,regulation of innate immune response; GO:0045892,negative regulation of DNA-templated transcription; GO:0050832,defense response to fungus;	--	NP_181299.1 myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]	70	58	24	40
AT2G37990	no change	-0.0909240468232972	0.8018490921654641	AT2G37990	--	GO:0000055,ribosomal large subunit export from nucleus; GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis;	--	NP_565878.1 ribosome biogenesis regulatory protein (RRS1) family protein [Arabidopsis thaliana]	188	168	237	175
AT2G38000	no change	0.5678531477461813	-0.08464285211435647	AT2G38000	--	GO:0005783,endoplasmic reticulum;	--	NP_181336.1 chaperone protein dnaJ-like protein [Arabidopsis thaliana]	100	73	64	44
AT2G38040	no change	-0.5554513944973015	-0.1497826800299472	AT2G38040	--	GO:0000166,nucleotide binding; GO:0003989,acetyl-CoA carboxylase activity; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009317,acetyl-CoA carboxylase complex; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016743,carboxyl- or carbamoyltransferase activity; GO:0016874,ligase activity; GO:2001295,malonyl-CoA biosynthetic process;	accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]; K01962;	NP_565880.1 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit [Arabidopsis thaliana]	1898	1488	1102	904
AT2G38050	no change	0.4291195187491643	-0.6952533002533389	AT2G38050	--	GO:0003865,3-oxo-5-alpha-steroid 4-dehydrogenase activity; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0009917,sterol 5-alpha reductase activity; GO:0010268,brassinosteroid homeostasis; GO:0016020,membrane; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016627,oxidoreductase activity, acting on the CH-CH group of donors; GO:0047751,cholestenone 5-alpha-reductase activity; GO:0050213,progesterone 5-alpha-reductase activity; GO:0102728,campest-4-en-3-one,NADPH:steroid 5alpha-reductase activity;	DET2; steroid 5-alpha-reductase [EC:1.3.1.22]; K09591;	NP_181340.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]	54	37	27	11
AT2G38230	no change	-0.10196149548147287	-0.04149895711264699	AT2G38230	--	GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0008615,pyridoxine biosynthetic process; GO:0009507,chloroplast; GO:0016829,lyase activity; GO:0016843,amine-lyase activity; GO:0036381,pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity; GO:0042819,vitamin B6 biosynthetic process; GO:0042823,pyridoxal phosphate biosynthetic process; GO:0046982,protein heterodimerization activity;	pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]; K06215;	NP_181358.1 pyridoxine biosynthesis 1.1 [Arabidopsis thaliana]	100	104	75	57
AT2G38310	no change	-0.31034549453702254	0.2427788965039209	AT2G38310	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0044389,ubiquitin-like protein ligase binding; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_565887.1 PYR1-like 4 [Arabidopsis thaliana]	81	40	57	37
AT2G38630	no change	-0.13228759753630442	-0.4054289192498301	AT2G38630	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_181397.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	44	67	24	31
AT2G38640	no change	-0.6913356724226286	0.4055022401808064	AT2G38640	--	--	--	NP_181398.1 LURP-one-like protein (DUF567) [Arabidopsis thaliana]	15	7	11	8
AT2G38830	no change	-0.6683269126492771	0.22071157540607847	AT2G38830	--	GO:0000813,ESCRT I complex; GO:0005768,endosome; GO:0008333,endosome to lysosome transport; GO:0015031,protein transport; GO:0036211,protein modification process; GO:0043130,ubiquitin binding; GO:0110165,cellular anatomical entity;	TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101; K12183;	NP_181417.2 Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]	26	23	17	20
AT2G39010	no change	0.8053769945528149	-0.3924274165447535	AT2G39010	--	GO:0003729,mRNA binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009624,response to nematode; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_001324169.1 plasma membrane intrinsic protein 2E [Arabidopsis thaliana]	1115	1018	561	507
AT2G39270	no change	-0.27655093126174346	0.5175390462447208	AT2G39270	--	GO:0000166,nucleotide binding; GO:0004017,adenylate kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006139,nucleobase-containing compound metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016776,phosphotransferase activity, phosphate group as acceptor; GO:0019205,nucleobase-containing compound kinase activity; GO:0046940,nucleoside monophosphate phosphorylation;	adk, AK; adenylate kinase [EC:2.7.4.3]; K00939;	NP_850314.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	52	53	62	39
AT2G39280	no change	0.3352059666321304	-0.7831616845066098	AT2G39280	--	GO:0005096,GTPase activator activity; GO:0090630,activation of GTPase activity;	--	NP_001189710.1 Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]	1941	1037	385	685
AT2G39480	no change	-0.6424306839603472	-0.03512293389025337	AT2G39480	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658;	AAM19777.1 At2g39480/F12L6.14 [Arabidopsis thaliana]	178	122	128	68
AT2G39730	no change	-0.3562389250729413	-0.20687297304127164	AT2G39730	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005794,Golgi apparatus; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009753,response to jasmonic acid; GO:0009941,chloroplast envelope; GO:0010150,leaf senescence; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0016887,ATP hydrolysis activity; GO:0030234,enzyme regulator activity; GO:0043531,ADP binding; GO:0046863,ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity;	--	NP_565913.1 rubisco activase [Arabidopsis thaliana]	7115	6770	4450	3524
AT2G39740	no change	-0.27863488422740423	-0.34264091367251043	AT2G39740	--	GO:0000932,P-body; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0010587,miRNA catabolic process; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0031123,RNA 3'-end processing; GO:0050265,RNA uridylyltransferase activity; GO:0071076,RNA 3' uridylation;	--	NP_001318386.1 Nucleotidyltransferase family protein [Arabidopsis thaliana]	66	72	38	34
AT2G39795	no change	0.08001860154165949	0.09789168587496432	AT2G39795	--	GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005794,Golgi apparatus;	--	NP_565914.1 Mitochondrial glycoprotein family protein [Arabidopsis thaliana]	112	104	85	68
AT2G40000	no change	-0.3358094404642636	0.10603187994166811	AT2G40000	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0006979,response to oxidative stress; GO:0009751,response to salicylic acid; GO:0019441,tryptophan catabolic process to kynurenine; GO:0020037,heme binding; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_181529.1 ortholog of sugar beet HS1 PRO-1 2 [Arabidopsis thaliana]	260	249	202	161
AT2G40020	no change	0.36374898372573616	-0.12194235366150218	AT2G40020	--	GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016570,histone modification; GO:0018024,histone-lysine N-methyltransferase activity; GO:0032259,methylation;	--	NP_973643.1 Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	24	33	19	16
AT2G40430	no change	-0.4544698729083795	0.5622834257772081	AT2G40430	--	GO:0000027,ribosomal large subunit assembly; GO:0000460,maturation of 5.8S rRNA; GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008097,5S rRNA binding; GO:0008150,biological_process; GO:0010971,positive regulation of G2/M transition of mitotic cell cycle; GO:0042254,ribosome biogenesis; GO:0051781,positive regulation of cell division;	--	NP_001318390.1 Nop53 protein [Arabidopsis thaliana]	169	185	200	149
AT2G40630	no change	-0.4596626814058109	0.8693833065951319	AT2G40630	--	GO:0009507,chloroplast; GO:0070176,DRM complex;	--	NP_001325082.1 Uncharacterized conserved protein (UCP030365) [Arabidopsis thaliana]	16	27	30	23
AT2G40730	no change	0.08936867712501073	0.31184372063794397	AT2G40730	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_181605.2 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]	306	278	264	215
AT2G40850	no change	-0.5356313072071563	0.05744536853670207	AT2G40850	--	GO:0000166,nucleotide binding; GO:0004430,1-phosphatidylinositol 4-kinase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046854,phosphatidylinositol phosphate biosynthetic process;	--	NP_181617.1 phosphoinositide 4-kinase gamma 1 [Arabidopsis thaliana]	9	7	1	9
AT2G40890	no change	-0.45196200001075326	-0.14037333884964795	AT2G40890	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0009699,phenylpropanoid biosynthetic process; GO:0009805,coumarin biosynthetic process; GO:0009809,lignin biosynthetic process; GO:0009813,flavonoid biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042802,identical protein binding; GO:0043231,intracellular membrane-bounded organelle; GO:0046409,p-coumarate 3-hydroxylase activity; GO:0046872,metal ion binding;	CYP98A, C3'H; 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase [EC:1.14.14.96]; K09754;	NP_850337.1 cytochrome P450, family 98, subfamily A, polypeptide 3 [Arabidopsis thaliana]	321	303	198	175
AT2G41110	no change	0.1300751277548652	-0.09588409858676858	AT2G41110	--	GO:0000325,plant-type vacuole; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0009846,pollen germination; GO:0019722,calcium-mediated signaling; GO:0030163,protein catabolic process; GO:0046872,metal ion binding;	CALM; calmodulin; K02183;	NP_180271.1 calmodulin 5 [Arabidopsis thaliana]	262	222	172	128
AT2G41120	no change	0.8402745068800449	0.4206666472767718	AT2G41120	--	--	--	NP_181645.1 DUF309 domain protein [Arabidopsis thaliana]	33	25	28	23
AT2G41430	no change	0.880729666871038	0.03185529759357364	AT2G41430	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009617,response to bacterium; GO:0009644,response to high light intensity; GO:0010196,nonphotochemical quenching; GO:0042651,thylakoid membrane; GO:0071456,cellular response to hypoxia;	--	NP_001189727.1 dehydration-induced protein (ERD15) [Arabidopsis thaliana]	1442	1188	937	826
AT2G41490	no change	0.8228145655266326	-0.8619653389464305	AT2G41490	--	GO:0003975,UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0006488,dolichol-linked oligosaccharide biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016780,phosphotransferase activity, for other substituted phosphate groups; GO:0043231,intracellular membrane-bounded organelle;	ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15]; K01001;	NP_565950.1 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Arabidopsis thaliana]	38	31	8	16
AT2G41500	no change	0.02317909899437118	-0.05656476355871346	AT2G41500	--	GO:0000398,mRNA splicing, via spliceosome; GO:0001709,cell fate determination; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0007267,cell-cell signaling; GO:0008380,RNA splicing; GO:0009553,embryo sac development; GO:0009560,embryo sac egg cell differentiation; GO:0016607,nuclear speck; GO:0017070,U6 snRNA binding; GO:0030621,U4 snRNA binding; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0110165,cellular anatomical entity;	PRPF4, PRP4; U4/U6 small nuclear ribonucleoprotein PRP4; K12662;	AAP40506.1 putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana]	134	94	70	72
AT2G41540	no change	0.0122678090872692	-0.18795135566170387	AT2G41540	--	GO:0004367,glycerol-3-phosphate dehydrogenase [NAD+] activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006072,glycerol-3-phosphate metabolic process; GO:0006116,NADH oxidation; GO:0009331,glycerol-3-phosphate dehydrogenase complex; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046168,glycerol-3-phosphate catabolic process; GO:0047952,glycerol-3-phosphate dehydrogenase [NAD(P)+] activity; GO:0051287,NAD binding;	GPD1; glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8]; K00006;	NP_001031525.1 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	548	530	384	250
AT2G41620	no change	0.0925552283369252	0.18376669427431397	AT2G41620	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005730,nucleolus; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0016020,membrane; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0017056,structural constituent of nuclear pore; GO:0051028,mRNA transport;	NUP93, NIC96; nuclear pore complex protein Nup93; K14309;	NP_565951.1 Nucleoporin interacting component (Nup93/Nic96-like) family protein [Arabidopsis thaliana]	328	241	212	208
AT2G41670	no change	0.4399198639270528	-0.14792855161641097	AT2G41670	--	GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005739,mitochondrion; GO:0006412,translation; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0032543,mitochondrial translation; GO:0048481,plant ovule development;	--	NP_850353.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	30	29	18	17
AT2G41705	no change	0.2747337438686976	0.35408728810491136	AT2G41705	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1903424,fluoride transmembrane transport; GO:1903425,fluoride transmembrane transporter activity;	--	NP_001154568.1 camphor resistance CrcB family protein [Arabidopsis thaliana]	22	12	4	22
AT2G41770	no change	-0.19697158783291976	0.0698148729732051	AT2G41770	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042802,identical protein binding; GO:0052324,plant-type cell wall cellulose biosynthetic process; GO:2001009,regulation of plant-type cell wall cellulose biosynthetic process;	--	KAG7639365.1 STELLO-like [Arabidopsis thaliana x Arabidopsis arenosa]	292	256	185	190
AT2G42120	no change	0.06894506835742854	-0.5311862596525085	AT2G42120	--	GO:0003677,DNA binding; GO:0003887,DNA-directed DNA polymerase activity; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0006260,DNA replication; GO:0006271,DNA strand elongation involved in DNA replication; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0042575,DNA polymerase complex; GO:0043625,delta DNA polymerase complex; GO:0071897,DNA biosynthetic process;	POLD2; DNA polymerase delta subunit 2; K02328;	NP_973664.1 DNA polymerase delta small subunit [Arabidopsis thaliana]	50	50	26	20
AT2G42150	no change	-0.07107743541052797	0.9754756465695376	AT2G42150	MYB_related	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005515,protein binding;	--	NP_181745.1 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	7	5	6	9
AT2G42220	no change	-0.17273600665762473	-0.8976388979780154	AT2G42220	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0016020,membrane;	--	NP_565969.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]	251	219	83	82
AT2G42230	no change	-0.4310158175254564	0.1342475335919857	AT2G42230	--	GO:0000922,spindle pole; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005815,microtubule organizing center; GO:0005856,cytoskeleton;	--	NP_973669.1 C-CAP/cofactor C-like domain-containing protein [Arabidopsis thaliana]	133	121	95	88
AT2G42290	no change	-0.37497637807039286	-0.7297487771965405	AT2G42290	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_181758.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	43	19	18	7
AT2G42330	no change	0.503469356044078	-0.620104071953183	AT2G42330	--	GO:0000390,spliceosomal complex disassembly; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0006468,protein phosphorylation; GO:0006807,nitrogen compound metabolic process; GO:0008380,RNA splicing; GO:0010600,regulation of auxin biosynthetic process; GO:0043170,macromolecule metabolic process; GO:0044238,primary metabolic process; GO:0071008,U2-type post-mRNA release spliceosomal complex;	--	NP_001078041.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]	44	15	10	14
AT2G42490	no change	-0.46029665393719904	0.6701242958594541	AT2G42490	--	GO:0002237,response to molecule of bacterial origin; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009447,putrescine catabolic process; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010311,lateral root formation; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_181777.2 Copper amine oxidase family protein [Arabidopsis thaliana]	307	297	370	270
AT2G42510	no change	0.7189537262277866	0.13133759998631414	AT2G42510	--	GO:0000387,spliceosomal snRNP assembly; GO:0005634,nucleus; GO:0032797,SMN complex;	--	NP_001325022.1 survival motor neuron interacting protein [Arabidopsis thaliana]	26	7	7	15
AT2G42530	no change	-0.0173435455057769	-0.5010340830243951	AT2G42530	--	GO:0005534,galactose binding; GO:0005829,cytosol; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0010150,leaf senescence; GO:0019898,extrinsic component of membrane; GO:0050832,defense response to fungus;	--	NP_181781.1 cold regulated 15b [Arabidopsis thaliana]	734	654	353	294
AT2G42680	no change	-0.3938214678823295	0.04415973605193154	AT2G42680	--	GO:0003677,DNA binding; GO:0003713,transcription coactivator activity; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0045893,positive regulation of DNA-templated transcription;	MBF1; putative transcription factor; K03627;	NP_565981.1 multiprotein bridging factor 1A [Arabidopsis thaliana]	860	814	604	533
AT2G42760	no change	-0.5492082673155545	-0.892161951589411	AT2G42760	--	GO:0003674,molecular_function;	--	NP_181804.1 DUF1685 family protein [Arabidopsis thaliana]	20	22	8	7
AT2G42870	no change	-0.6259707268409452	-0.29222248490359704	AT2G42870	--	GO:0003712,transcription coregulator activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009641,shade avoidance; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032502,developmental process; GO:0042803,protein homodimerization activity; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_565988.1 phy rapidly regulated 1 [Arabidopsis thaliana]	11	17	12	4
AT2G43060	no change	0.2546941803680628	0.4853812372888387	AT2G43060	--	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity;	--	NP_181834.1 ILI1 binding bHLH 1 [Arabidopsis thaliana]	16	27	35	8
AT2G43160	no change	-0.17713490374917337	-0.17248030930504635	AT2G43160	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005543,phospholipid binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0009504,cell plate; GO:0015031,protein transport; GO:0030125,clathrin vesicle coat; GO:0030136,clathrin-coated vesicle; GO:0030276,clathrin binding; GO:0031410,cytoplasmic vesicle;	EPN; epsin; K12471;	NP_001325306.1 ENTH/VHS family protein [Arabidopsis thaliana]	307	304	186	171
AT2G43180	no change	-0.3599104519246625	0.49052910725270266	AT2G43180	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0043231,intracellular membrane-bounded organelle;	--	NP_850388.1 Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]	46	28	38	30
AT2G43750	no change	0.5337913030504859	-0.41806638842940264	AT2G43750	--	GO:0004124,cysteine synthase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006535,cysteine biosynthetic process from serine; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009509,chromoplast; GO:0009536,plastid; GO:0009567,double fertilization forming a zygote and endosperm; GO:0009570,chloroplast stroma; GO:0009860,pollen tube growth; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019344,cysteine biosynthetic process; GO:0048046,apoplast;	cysK; cysteine synthase [EC:2.5.1.47]; K01738;	NP_001189745.1 O-acetylserine (thiol) lyase B [Arabidopsis thaliana]	734	752	418	322
AT2G43760	no change	-0.21322286542254176	0.29393695266716957	AT2G43760	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0019008,molybdopterin synthase complex; GO:0030366,molybdopterin synthase activity;	MOCS2B, moaE; molybdopterin synthase catalytic subunit [EC:2.8.1.12]; K03635;	NP_001078051.1 molybdopterin biosynthesis MoaE family protein [Arabidopsis thaliana]	74	60	64	45
AT2G43890	no change	-0.7573717704525579	-0.5930751114109051	AT2G43890	--	GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity;	E3.2.1.15; polygalacturonase [EC:3.2.1.15]; K01184;	NP_181917.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	48	20	5	22
AT2G43970	no change	-0.02186903253765425	0.5810492983184407	AT2G43970	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005844,polysome; GO:0006396,RNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_850406.1 RNA-binding protein [Arabidopsis thaliana]	69	50	60	56
AT2G44130	no change	0.2380514337872326	-0.2477304838759805	AT2G44130	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:2000762,regulation of phenylpropanoid metabolic process;	--	NP_566009.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	342	294	209	147
AT2G44260	no change	-0.3851901584762407	-0.17537542788426266	AT2G44260	--	GO:0016020,membrane;	--	NP_850414.1 DUF946 family protein (DUF946) [Arabidopsis thaliana]	45	40	29	21
AT2G44310	no change	-0.9767930239661308	0.5597870411050037	AT2G44310	--	GO:0005509,calcium ion binding; GO:0005829,cytosol;	--	NP_566015.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]	239	240	253	214
AT2G44350	no change	-0.21159578388514372	0.13372158923415275	AT2G44350	--	GO:0004108,citrate (Si)-synthase activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006099,tricarboxylic acid cycle; GO:0006101,citrate metabolic process; GO:0008270,zinc ion binding; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0016740,transferase activity; GO:0036440,citrate synthase activity; GO:0046912,acyltransferase activity, acyl groups converted into alkyl on transfer;	CS, gltA; citrate synthase [EC:2.3.3.1]; K01647;	NP_001324514.1 Citrate synthase family protein [Arabidopsis thaliana]	697	691	556	453
AT2G44430	no change	-0.01967810141692955	-0.15148018542678518	AT2G44430	MYB_related	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0016573,histone acetylation; GO:0035267,NuA4 histone acetyltransferase complex;	--	NP_181971.1 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	77	57	37	41
AT2G44490	no change	-0.42833379604106486	-0.17966230117085968	AT2G44490	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009617,response to bacterium; GO:0009651,response to salt stress; GO:0009682,induced systemic resistance; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019760,glucosinolate metabolic process; GO:0019762,glucosinolate catabolic process; GO:0042344,indole glucosinolate catabolic process; GO:0042742,defense response to bacterium; GO:0050832,defense response to fungus; GO:0052544,defense response by callose deposition in cell wall; GO:0102483,scopolin beta-glucosidase activity;	E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188;	NP_181977.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	251	253	199	103
AT2G44760	no change	0.35357227115255613	-0.7374748466238861	AT2G44760	--	GO:0003674,molecular_function;	--	NP_182004.2 dihydroorotate dehydrogenase (DUF3598) [Arabidopsis thaliana]	65	98	27	37
AT2G44860	no change	-0.3924428531118719	0.651085477490259	AT2G44860	--	GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0022625,cytosolic large ribosomal subunit; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis;	RP-L24e, RPL24; large subunit ribosomal protein L24e; K02896;	NP_001078059.1 Ribosomal protein L24e family protein [Arabidopsis thaliana]	81	82	90	79
AT2G45310	no change	-0.6998717952606557	-0.6017462326316709	AT2G45310	--	GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0032580,Golgi cisterna membrane; GO:0050378,UDP-glucuronate 4-epimerase activity;	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]; K08679;	NP_182056.1 UDP-D-glucuronate 4-epimerase 4 [Arabidopsis thaliana]	110	66	38	37
AT2G45330	no change	0.40075710364232153	-0.02981563603880563	AT2G45330	--	GO:0000215,tRNA 2'-phosphotransferase activity; GO:0006388,tRNA splicing, via endonucleolytic cleavage and ligation; GO:0008033,tRNA processing; GO:0016740,transferase activity;	--	NP_182058.2 RNA 2'-phosphotransferase, Tpt1 / KptA family [Arabidopsis thaliana]	37	33	18	26
AT2G45340	no change	-0.02267972741870855	-0.25468185861011083	AT2G45340	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_182059.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	213	159	114	91
AT2G45520	no change	0.2283588979678157	0.8810442717422138	AT2G45520	--	GO:0008150,biological_process;	--	NP_566044.1 coiled-coil protein [Arabidopsis thaliana]	72	54	92	62
AT2G45630	no change	-0.975556196135844	-0.4694000781640244	AT2G45630	--	GO:0005829,cytosol; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0051287,NAD binding;	--	NP_566049.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	24	12	10	7
AT2G45710	no change	0.454153826473042	0.960987336027232	AT2G45710	--	GO:0000028,ribosomal small subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex;	RP-S27e, RPS27; small subunit ribosomal protein S27e; K02978;	NP_182095.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]	158	153	212	187
AT2G45720	no change	0.3572057130914009	0.2832425230891509	AT2G45720	--	GO:0005515,protein binding;	--	NP_001031543.1 ARM repeat superfamily protein [Arabidopsis thaliana]	71	71	71	45
AT2G45800	no change	-0.367063716694528	-0.3941431886172038	AT2G45800	--	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0015629,actin cytoskeleton; GO:0046872,metal ion binding; GO:0051015,actin filament binding; GO:0051017,actin filament bundle assembly;	--	CAD5321489.1 unnamed protein product [Arabidopsis thaliana]	63	66	46	21
AT2G45810	no change	-0.1063894869881866	0.2712208707011666	AT2G45810	--	GO:0000166,nucleotide binding; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0010494,cytoplasmic stress granule; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017148,negative regulation of translation; GO:0033962,P-body assembly; GO:0034063,stress granule assembly; GO:0051028,mRNA transport;	DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]; K12614;	NP_182105.1 DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	144	129	122	96
AT2G45850	no change	-0.41871742515302	-0.17528779816188786	AT2G45850	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus;	--	NP_182109.1 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	59	38	46	13
AT2G45990	no change	-0.09181433510424616	-0.00303463099921152	AT2G45990	--	GO:0000149,SNARE binding; GO:0000323,lytic vacuole; GO:0005768,endosome; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0032259,methylation; GO:0035493,SNARE complex assembly;	--	NP_566060.1 ribosomal RNA small subunit methyltransferase G [Arabidopsis thaliana]	103	95	74	57
AT2G46000	no change	0.11361389797250827	-0.1505468368017427	AT2G46000	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum;	--	NP_566061.1 LDL receptor wingless signaling/trafficking chaperone [Arabidopsis thaliana]	43	49	35	21
AT2G46020	no change	-0.2530502009947952	0.0217752093389874	AT2G46020	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0008094,ATP-dependent activity, acting on DNA; GO:0010199,organ boundary specification between lateral organs and the meristem; GO:0010449,root meristem growth; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0040029,epigenetic regulation of gene expression; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048731,system development; GO:0051252,regulation of RNA metabolic process; GO:0090691,formation of plant organ boundary; GO:0140658,ATP-dependent chromatin remodeler activity; GO:1900036,positive regulation of cellular response to heat; GO:1903798,regulation of miRNA maturation;	--	NP_001323760.1 transcription regulatory protein SNF2 [Arabidopsis thaliana]	449	483	364	268
AT2G46110	no change	-0.5042317550746198	-0.8467752366610072	AT2G46110	--	GO:0000287,magnesium ion binding; GO:0003824,catalytic activity; GO:0003864,3-methyl-2-oxobutanoate hydroxymethyltransferase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0015940,pantothenate biosynthetic process; GO:0016740,transferase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]; K00606;	NP_182135.1 ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana]	28	39	14	11
AT2G46160	no change	-0.8626776115425996	0.8519706926187175	AT2G46160	--	GO:0003674,molecular_function; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_001324277.1 RING/U-box superfamily protein [Arabidopsis thaliana]	12	14	16	15
AT2G46230	no change	0.40166621370308353	0.4855094340864562	AT2G46230	--	GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome;	UTP24, FCF1; U3 small nucleolar RNA-associated protein 24; K14566;	NP_566068.1 PIN domain-like family protein [Arabidopsis thaliana]	197	187	208	150
AT2G46280	no change	-0.3458826934309194	0.7193303670486739	AT2G46280	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	EIF3I; translation initiation factor 3 subunit I; K03246;	NP_182151.1 TGF-beta receptor interacting protein 1 [Arabidopsis thaliana]	473	437	554	438
AT2G46380	no change	0.7640413235635405	0.05268045664668436	AT2G46380	--	GO:0003674,molecular_function; GO:1900150,regulation of defense response to fungus;	--	NP_182161.3 extra-large G-like protein, putative (DUF3133) [Arabidopsis thaliana]	26	31	25	15
AT2G46505	no change	-0.2116858288696668	0.141576391459707	AT2G46505	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005749,mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone); GO:0006099,tricarboxylic acid cycle; GO:0006121,mitochondrial electron transport, succinate to ubiquinone; GO:0008177,succinate dehydrogenase (ubiquinone) activity; GO:0016020,membrane; GO:0045273,respiratory chain complex II; GO:0046872,metal ion binding;	--	NP_566077.1 succinate dehydrogenase subunit 4 [Arabidopsis thaliana]	78	91	73	52
AT2G46570	no change	-0.8289646969730619	-0.7438964880965939	AT2G46570	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0046274,lignin catabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0052716,hydroquinone:oxygen oxidoreductase activity;	E1.10.3.2; laccase [EC:1.10.3.2]; K05909;	NP_182180.1 laccase 6 [Arabidopsis thaliana]	19	7	11	0
AT2G46610	no change	0.19292900230129	-0.27938461964449796	AT2G46610	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck;	SFRS4_5_6; splicing factor, arginine/serine-rich 4/5/6; K12893;	NP_182184.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	20	13	11	7
AT2G46735	no change	0.4382897819256736	0.0499402639624671	AT2G46735	--	GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_566084.1 death domain associated protein [Arabidopsis thaliana]	19	8	15	4
AT2G46915	no change	-0.8711721833275671	0.2565602231523786	AT2G46915	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_850462.2 DUF3754 family protein, putative (DUF3754) [Arabidopsis thaliana]	41	50	48	26
AT2G47010	no change	0.603174519805286	-0.7365877157786741	AT2G47010	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_566093.4 calcium/calcium/calmodulin-dependent Serine/Threonine-kinase [Arabidopsis thaliana]	110	111	43	44
AT2G47020	no change	-0.4634985245044379	0.4206905237587341	AT2G47020	--	GO:0003747,translation release factor activity; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006415,translational termination; GO:0016149,translation release factor activity, codon specific;	--	NP_182225.3 Peptide chain release factor 1 [Arabidopsis thaliana]	11	11	8	11
AT2G47330	no change	-0.1412318711479752	0.3551433630347667	AT2G47330	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	DDX42, SF3B125; ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]; K12835;	NP_566099.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	132	132	135	91
AT2G47380	no change	0.4749536849674964	0.7763986276702605	AT2G47380	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005746,mitochondrial respirasome; GO:0016020,membrane;	--	NP_001324866.1 Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]	87	73	91	88
AT2G47390	no change	0.9543967050733322	0.07938807136191248	AT2G47390	--	GO:0006508,proteolysis; GO:0008236,serine-type peptidase activity;	--	KAG7640041.1 Alpha/Beta hydrolase fold [Arabidopsis thaliana x Arabidopsis arenosa]	841	784	639	499
AT2G47400	no change	-0.5729116700893307	0.2688695098144158	AT2G47400	--	GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0016151,nickel cation binding; GO:0019253,reductive pentose-phosphate cycle; GO:0032991,protein-containing complex; GO:0080153,negative regulation of reductive pentose-phosphate cycle;	--	NP_566100.2 CP12 domain-containing protein 1 [Arabidopsis thaliana]	4916	4352	4106	3274
AT2G47440	no change	0.28137516614535013	-0.2680228451086598	AT2G47440	--	GO:0005515,protein binding;	--	NP_001325408.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	339	244	151	162
AT2G47450	no change	-0.6698645598629068	0.02773458204652342	AT2G47450	--	GO:0005515,protein binding; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009644,response to high light intensity; GO:0009941,chloroplast envelope; GO:0019904,protein domain specific binding; GO:0030674,protein-macromolecule adaptor activity; GO:0032991,protein-containing complex; GO:0042802,identical protein binding; GO:0045038,protein import into chloroplast thylakoid membrane; GO:0046872,metal ion binding; GO:0070208,protein heterotrimerization; GO:0080085,signal recognition particle, chloroplast targeting; GO:0097718,disordered domain specific binding; GO:1990904,ribonucleoprotein complex;	--	NP_566101.1 chloroplast signal recognition particle component (CAO) [Arabidopsis thaliana]	445	428	324	265
AT2G47640	no change	-0.26221615775879903	0.01510478770449253	AT2G47640	--	GO:0000387,spliceosomal snRNP assembly; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005682,U5 snRNP; GO:0005685,U1 snRNP; GO:0005686,U2 snRNP; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0030532,small nuclear ribonucleoprotein complex; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:1990904,ribonucleoprotein complex;	SNRPD2, SMD2; small nuclear ribonucleoprotein D2; K11096;	NP_001078331.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	115	85	64	67
AT2G47650	no change	-0.3497333111401735	-0.2860549256034915	AT2G47650	--	GO:0000138,Golgi trans cisterna; GO:0000325,plant-type vacuole; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0032580,Golgi cisterna membrane; GO:0033320,UDP-D-xylose biosynthetic process; GO:0042732,D-xylose metabolic process; GO:0048040,UDP-glucuronate decarboxylase activity; GO:0070403,NAD+ binding;	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]; K08678;	NP_182287.1 UDP-xylose synthase 4 [Arabidopsis thaliana]	579	468	294	268
AT2G47690	no change	0.6422802917920272	0.09054021821611094	AT2G47690	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0005758,mitochondrial intermembrane space; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFS5; NADH dehydrogenase (ubiquinone) Fe-S protein 5; K03938;	NP_182291.1 NADH-ubiquinone oxidoreductase-like protein [Arabidopsis thaliana]	54	56	55	25
AT2G47860	no change	-0.9065095841476462	-0.03513666509474236	AT2G47860	--	GO:0005515,protein binding; GO:0009846,pollen germination; GO:0016567,protein ubiquitination;	--	NP_001189774.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	15	16	16	5
AT2G47910	no change	-0.921366442149367	0.6010892240831642	AT2G47910	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010275,NAD(P)H dehydrogenase complex assembly;	--	NP_973713.1 chlororespiratory reduction 6 [Arabidopsis thaliana]	44	24	26	39
AT2G47990	no change	0.4368837310153075	0.5661041542358296	AT2G47990	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0007049,cell cycle; GO:0009553,embryo sac development; GO:0009561,megagametogenesis; GO:0045943,positive regulation of transcription by RNA polymerase I; GO:0051301,cell division; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	UTP15; U3 small nucleolar RNA-associated protein 15; K14549;	NP_182320.1 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	249	186	264	165
AT2G48030	no change	-0.7555958562430454	-0.30008890734949434	AT2G48030	--	GO:0003824,catalytic activity; GO:0005783,endoplasmic reticulum; GO:0006506,GPI anchor biosynthetic process;	--	NP_001325107.1 DNAse I-like superfamily protein [Arabidopsis thaliana]	123	96	59	57
AT3G01140	no change	-0.2817046396272362	0.0696122188094709	AT3G01140	MYB	GO:0000902,cell morphogenesis; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010091,trichome branching; GO:0035017,cuticle pattern formation; GO:1901957,regulation of cutin biosynthetic process;	--	NP_001326423.1 myb domain protein 106 [Arabidopsis thaliana]	71	46	48	33
AT3G01280	no change	0.8960704869039541	0.3523772991726558	AT3G01280	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006952,defense response; GO:0008308,voltage-gated anion channel activity; GO:0009507,chloroplast; GO:0009617,response to bacterium; GO:0009941,chloroplast envelope; GO:0015288,porin activity; GO:0015698,inorganic anion transport; GO:0016020,membrane; GO:0046930,pore complex; GO:0055085,transmembrane transport; GO:0098656,anion transmembrane transport;	VDAC2; voltage-dependent anion channel protein 2; K15040;	NP_186777.1 voltage dependent anion channel 1 [Arabidopsis thaliana]	615	553	584	409
AT3G01350	no change	0.01579249541465884	-0.9588749407104588	AT3G01350	--	GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_186784.1 Major facilitator superfamily protein [Arabidopsis thaliana]	22	13	8	4
AT3G01360	no change	0.3505734182079577	-0.1542186258958937	AT3G01360	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001030617.1 plant viral-response family protein (DUF716) [Arabidopsis thaliana]	59	69	55	24
AT3G01470	no change	0.6731921183424541	0.34371301571073715	AT3G01470	HD-ZIP	GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009637,response to blue light; GO:0009651,response to salt stress; GO:0009965,leaf morphogenesis; GO:0017148,negative regulation of translation; GO:0042803,protein homodimerization activity; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_186796.1 homeobox 1 [Arabidopsis thaliana]	45	19	42	13
AT3G01690	no change	-0.7402422198173457	0.468291044979885	AT3G01690	--	GO:0005515,protein binding;	--	NP_186818.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	61	67	77	43
AT3G01790	no change	0.08533926970464177	0.4581785817903742	AT3G01790	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005762,mitochondrial large ribosomal subunit; GO:0005840,ribosome; GO:0006412,translation; GO:0017148,negative regulation of translation; GO:1990904,ribonucleoprotein complex;	RP-L13, MRPL13, rplM; large subunit ribosomal protein L13; K02871;	NP_186828.2 Ribosomal protein L13 family protein [Arabidopsis thaliana]	141	120	154	87
AT3G01930	no change	-0.1276353971082152	-0.23232303750607852	AT3G01930	--	GO:0016020,membrane;	--	NP_566157.1 Major facilitator superfamily protein [Arabidopsis thaliana]	141	85	61	63
AT3G01980	no change	0.7255246005463039	-0.07353042957160782	AT3G01980	--	GO:0005777,peroxisome; GO:0016020,membrane;	--	NP_001078091.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	625	509	414	300
AT3G02030	no change	-0.20967727320622828	-0.8409767918949295	AT3G02030	--	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0008374,O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0044249,cellular biosynthetic process; GO:1901576,organic substance biosynthetic process;	--	NP_186852.4 transferase [Arabidopsis thaliana]	278	211	108	73
AT3G02040	no change	0.04454218158599814	-0.43754113271884415	AT3G02040	--	GO:0000287,magnesium ion binding; GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity; GO:0008889,glycerophosphodiester phosphodiesterase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0030643,cellular phosphate ion homeostasis; GO:0046475,glycerophospholipid catabolic process; GO:0071456,cellular response to hypoxia;	GDE1; glycerophosphodiester phosphodiesterase [EC:3.1.4.46]; K18696;	NP_566159.1 senescence-related gene 3 [Arabidopsis thaliana]	76	59	33	32
AT3G02255	no change	0.2657784487578721	0.3921349418618837	AT3G02255	--	--	--	NP_001326112.1 hypothetical protein AT3G02255 [Arabidopsis thaliana]	5	10	11	3
AT3G02380	no change	-0.15262462419359868	0.24256199774827047	AT3G02380	CO-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009658,chloroplast organization; GO:0009909,regulation of flower development; GO:0046872,metal ion binding;	--	NP_186887.1 CONSTANS-like 2 [Arabidopsis thaliana]	10	9	9	6
AT3G02410	no change	0.10141284325646524	0.13099001765400772	AT3G02410	--	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0009737,response to abscisic acid; GO:0010296,prenylcysteine methylesterase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	PCME; prenylcysteine alpha-carboxyl methylesterase [EC:3.1.1.-]; K15889;	NP_186890.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	12	13	9	9
AT3G02470	no change	0.5936146932592311	0.08613363368944714	AT3G02470	--	GO:0004014,adenosylmethionine decarboxylase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006596,polyamine biosynthetic process; GO:0006597,spermine biosynthetic process; GO:0008295,spermidine biosynthetic process; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0019079,viral genome replication; GO:0099402,plant organ development;	speD, AMD1; S-adenosylmethionine decarboxylase [EC:4.1.1.50]; K01611;	NP_001078093.1 S-adenosylmethionine decarboxylase [Arabidopsis thaliana]	1580	1379	1174	905
AT3G02690	no change	0.2902462158333888	0.3445924160370289	AT3G02690	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane;	--	NP_566180.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	69	59	58	49
AT3G02700	no change	-0.6469997934384312	-0.11216206740614078	AT3G02700	--	GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_566181.1 NC domain-containing protein-like protein [Arabidopsis thaliana]	52	45	26	32
AT3G02720	no change	-0.30009717343898673	-0.6960056146967935	AT3G02720	--	GO:0004462,lactoylglutathione lyase activity; GO:0005829,cytosol; GO:0016829,lyase activity; GO:0019172,glyoxalase III activity; GO:0019249,lactate biosynthetic process; GO:0061727,methylglyoxal catabolic process to lactate;	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881;	NP_186921.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	211	186	79	81
AT3G02730	no change	-0.3347608572407849	-0.5443604947094249	AT3G02730	--	GO:0004857,enzyme inhibitor activity; GO:0005829,cytosol; GO:0006109,regulation of carbohydrate metabolic process; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009642,response to light intensity; GO:0019904,protein domain specific binding; GO:0043085,positive regulation of catalytic activity; GO:0043086,negative regulation of catalytic activity; GO:0045454,cell redox homeostasis;	trxA; thioredoxin 1; K03671;	NP_186922.1 thioredoxin F-type 1 [Arabidopsis thaliana]	383	380	187	159
AT3G02910	no change	-0.4939748396301336	0.9972646552776708	AT3G02910	--	GO:0005829,cytosol; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0061929,gamma-glutamylaminecyclotransferase activity;	GGACT; gamma-glutamylaminecyclotransferase [EC:2.3.2.-]; K19761;	NP_566187.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]	53	71	84	80
AT3G03220	no change	0.7089794500216564	0.5578455147203657	AT3G03220	--	GO:0005576,extracellular region; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0071555,cell wall organization;	--	NP_566197.1 expansin A13 [Arabidopsis thaliana]	294	313	361	239
AT3G03320	no change	-0.5697658504150621	0.11152036719783928	AT3G03320	--	GO:0008150,biological_process;	--	NP_566202.1 RNA-binding ASCH domain protein [Arabidopsis thaliana]	8	24	15	9
AT3G03330	no change	0.5024942330258004	-0.2328700175090904	AT3G03330	--	GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity;	DHRS7; dehydrogenase/reductase SDR family member 7 [EC:1.1.-.-]; K11165;	NP_186983.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	97	100	71	42
AT3G03470	no change	-0.3648597365062761	0.1545474003962953	AT3G03470	--	GO:0003958,NADPH-hemoprotein reductase activity; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0015996,chlorophyll catabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0033310,chlorophyll a catabolic process; GO:0046872,metal ion binding; GO:0106371,fluorescent chlorophyll catabolite monooxygenase (deformylase) activity;	--	NP_186997.1 cytochrome P450, family 87, subfamily A, polypeptide 9 [Arabidopsis thaliana]	1273	990	983	687
AT3G03550	no change	0.0828636670135517	-0.2811438250750491	AT3G03550	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_566208.1 RING/U-box superfamily protein [Arabidopsis thaliana]	85	54	48	28
AT3G03740	no change	0.5384492187097389	0.138447173912987	AT3G03740	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006970,response to osmotic stress; GO:0016567,protein ubiquitination; GO:0042631,cellular response to water deprivation; GO:0071472,cellular response to salt stress;	SPOP; speckle-type POZ protein; K10523;	NP_566212.2 BTB-POZ and MATH domain 4 [Arabidopsis thaliana]	144	106	96	84
AT3G03990	no change	0.3331316721782497	0.1254249452114025	AT3G03990	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0010223,secondary shoot formation; GO:0016787,hydrolase activity; GO:1901601,strigolactone biosynthetic process; GO:1902348,cellular response to strigolactone;	--	NP_566220.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	338	285	226	218
AT3G04550	no change	0.33077722104867235	-0.3331738722024421	AT3G04550	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_566230.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]	220	159	123	77
AT3G04560	no change	-0.23631049174164703	-0.06581197800277883	AT3G04560	--	--	--	NP_566231.1 nucleolar/coiled-body phosphoprotein [Arabidopsis thaliana]	57	47	39	27
AT3G04870	no change	-0.18780503033883797	0.2510764090720886	AT3G04870	--	GO:0009507,chloroplast; GO:0009509,chromoplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016117,carotenoid biosynthetic process; GO:0016120,carotene biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016719,carotene 7,8-desaturase activity; GO:0052886,9,9'-dicis-carotene:quinone oxidoreductase activity; GO:0052887,7,9,9'-tricis-neurosporene:quinone oxidoreductase activity; GO:0052889,9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene; GO:1901177,lycopene biosynthetic process;	ZDS, crtQ; zeta-carotene desaturase [EC:1.3.5.6]; K00514;	NP_001319473.1 zeta-carotene desaturase [Arabidopsis thaliana]	292	285	288	174
AT3G04880	no change	0.24472212123849832	-0.15712862212456255	AT3G04880	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0016853,isomerase activity;	--	NP_566241.1 DNA-damage-repair/toleration protein (DRT102) [Arabidopsis thaliana]	137	103	92	52
AT3G05200	no change	0.20469666878033943	-0.4514340567388472	AT3G05200	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_566249.1 RING/U-box superfamily protein [Arabidopsis thaliana]	44	41	22	19
AT3G05220	no change	0.1932225384249983	0.34719900708547513	AT3G05220	--	GO:0009506,plasmodesma; GO:0046872,metal ion binding;	--	NP_187173.2 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]	380	415	375	298
AT3G05230	no change	0.09845322321763834	-0.20421690159489625	AT3G05230	--	GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER;	SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948;	NP_566250.1 Signal peptidase subunit [Arabidopsis thaliana]	65	58	36	34
AT3G05350	no change	0.2205343901854948	-0.0272996430471618	AT3G05350	--	GO:0004177,aminopeptidase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0070006,metalloaminopeptidase activity; GO:0110165,cellular anatomical entity;	--	NP_187186.5 Metallopeptidase M24 family protein [Arabidopsis thaliana]	109	87	72	55
AT3G05870	no change	0.08254815516346592	0.6257283175156872	AT3G05870	--	GO:0005680,anaphase-promoting complex; GO:0008270,zinc ion binding; GO:0016567,protein ubiquitination; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0046872,metal ion binding; GO:0051301,cell division; GO:0061630,ubiquitin protein ligase activity; GO:0097602,cullin family protein binding;	APC11; anaphase-promoting complex subunit 11; K03358;	NP_001325493.1 anaphase-promoting complex/cyclosome 11 [Arabidopsis thaliana]	9	9	8	10
AT3G06470	no change	0.2687073367142259	0.2518260112475371	AT3G06470	--	GO:0005515,protein binding; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0008610,lipid biosynthetic process; GO:0009922,fatty acid elongase activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0019367,fatty acid elongation, saturated fatty acid; GO:0030148,sphingolipid biosynthetic process; GO:0034625,fatty acid elongation, monounsaturated fatty acid; GO:0034626,fatty acid elongation, polyunsaturated fatty acid; GO:0042761,very long-chain fatty acid biosynthetic process; GO:0044249,cellular biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	--	NP_187298.1 GNS1/SUR4 membrane protein family [Arabidopsis thaliana]	28	20	18	19
AT3G06790	no change	-0.01258843242971175	0.906165707684326	AT3G06790	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0016554,cytidine to uridine editing; GO:0043170,macromolecule metabolic process; GO:0046983,protein dimerization activity; GO:0050897,cobalt ion binding; GO:0080156,mitochondrial mRNA modification; GO:1900864,mitochondrial RNA modification;	--	NP_974243.1 plastid developmental protein DAG [Arabidopsis thaliana]	69	61	110	55
AT3G06950	no change	0.1519877872306479	0.5618350618474564	AT3G06950	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0031119,tRNA pseudouridine synthesis; GO:0106029,tRNA pseudouridine synthase activity;	--	NP_187351.2 Pseudouridine synthase family protein [Arabidopsis thaliana]	24	27	22	27
AT3G06960	no change	-0.1484587537354967	0.2546338907310663	AT3G06960	--	GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006869,lipid transport; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0034196,acylglycerol transport; GO:0042803,protein homodimerization activity; GO:0070300,phosphatidic acid binding; GO:1990052,ER to chloroplast lipid transport;	--	NP_566296.1 pigment defective 320 [Arabidopsis thaliana]	76	71	64	52
AT3G07080	no change	0.4941310731895158	0.7632219484384123	AT3G07080	--	GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_187364.1 EamA-like transporter family [Arabidopsis thaliana]	49	22	48	31
AT3G07090	no change	0.10312693995067083	0.2911237907338771	AT3G07090	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008233,peptidase activity; GO:0070646,protein modification by small protein removal;	--	NP_001327168.1 PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]	85	127	116	62
AT3G07170	no change	0.2668763805244292	0.7877182922627249	AT3G07170	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing;	--	NP_566300.1 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	85	56	81	77
AT3G07180	no change	0.3774884808922339	0.12657906644075087	AT3G07180	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006506,GPI anchor biosynthetic process; GO:0016020,membrane; GO:0016255,attachment of GPI anchor to protein; GO:0042765,GPI-anchor transamidase complex;	PIGS; GPI-anchor transamidase subunit S; K05291;	NP_187374.2 GPI transamidase component PIG-S-like protein [Arabidopsis thaliana]	486	423	321	326
AT3G07320	no change	0.13152786628567648	-0.13720826685082127	AT3G07320	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_683538.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	647	544	410	307
AT3G07390	no change	-0.9422376906665516	-0.9053849670774854	AT3G07390	--	--	--	NP_566306.3 auxin-induced in root cultures-like protein [Arabidopsis thaliana]	952	857	373	269
AT3G07400	no change	-0.14646103609435546	0.08211147383351111	AT3G07400	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006629,lipid metabolic process; GO:0016020,membrane;	--	NP_187396.1 lipase class 3 family protein [Arabidopsis thaliana]	57	75	60	35
AT3G07410	no change	-0.3317518077581751	0.3752729542150384	AT3G07410	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane;	--	NP_187397.1 RAB GTPase homolog A5B [Arabidopsis thaliana]	94	76	79	66
AT3G07510	no change	-0.09038907783763324	-0.35029705248209814	AT3G07510	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001078120.1 maternal effect embryo arrest protein [Arabidopsis thaliana]	64	52	39	22
AT3G07565	no change	0.29708889547188555	0.9935512721294976	AT3G07565	--	--	--	NP_187413.1 histone H2A deubiquitinase (DUF3755) [Arabidopsis thaliana]	37	21	40	35
AT3G07570	no change	0.6327017787013386	0.00977082532060614	AT3G07570	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_566313.2 Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein [Arabidopsis thaliana]	48	59	51	23
AT3G07690	no change	-0.18281007194298884	-0.4182949561409093	AT3G07690	--	GO:0004367,glycerol-3-phosphate dehydrogenase [NAD+] activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006072,glycerol-3-phosphate metabolic process; GO:0006116,NADH oxidation; GO:0006952,defense response; GO:0009331,glycerol-3-phosphate dehydrogenase complex; GO:0009627,systemic acquired resistance; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046168,glycerol-3-phosphate catabolic process; GO:0047952,glycerol-3-phosphate dehydrogenase [NAD(P)+] activity; GO:0051287,NAD binding;	GPD1; glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8]; K00006;	NP_187426.3 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	33	28	16	14
AT3G07700	no change	0.738555291522368	-0.4129932799844216	AT3G07700	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006629,lipid metabolic process; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010287,plastoglobule; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0034599,cellular response to oxidative stress; GO:0046467,membrane lipid biosynthetic process; GO:0055072,iron ion homeostasis; GO:0080177,plastoglobule organization; GO:0106310,protein serine kinase activity; GO:1901031,regulation of response to reactive oxygen species; GO:1990641,response to iron ion starvation;	--	NP_001319495.1 Protein kinase superfamily protein [Arabidopsis thaliana]	488	476	272	209
AT3G08020	no change	-0.1856750100026943	0.6076271279078503	AT3G08020	--	GO:0003712,transcription coregulator activity; GO:0006351,DNA-templated transcription; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_187459.2 PHD finger family protein [Arabidopsis thaliana]	69	43	64	48
AT3G08580	no change	0.9451387488155648	-0.02297642970706191	AT3G08580	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005347,ATP transmembrane transporter activity; GO:0005471,ATP:ADP antiporter activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0005740,mitochondrial envelope; GO:0005743,mitochondrial inner membrane; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0015865,purine nucleotide transport; GO:0016020,membrane; GO:0055085,transmembrane transport; GO:0140021,mitochondrial ADP transmembrane transport; GO:1990544,mitochondrial ATP transmembrane transport;	SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31; K05863;	NP_187470.1 ADP/ATP carrier 1 [Arabidopsis thaliana]	5319	4845	3749	2883
AT3G08900	no change	-0.1307129972435328	-0.1623568842975293	AT3G08900	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009832,plant-type cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016853,isomerase activity; GO:0016866,intramolecular transferase activity; GO:0033356,UDP-L-arabinose metabolic process; GO:0052691,UDP-arabinopyranose mutase activity; GO:0071555,cell wall organization; GO:0071669,plant-type cell wall organization or biogenesis;	RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30]; K13379;	NP_187502.2 reversibly glycosylated polypeptide 3 [Arabidopsis thaliana]	48	40	35	18
AT3G09030	no change	-0.5669044197138514	0.20862376228128257	AT3G09030	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0015031,protein transport; GO:0016567,protein ubiquitination; GO:0050832,defense response to fungus; GO:0051260,protein homooligomerization;	--	NP_187515.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]	59	52	43	41
AT3G09050	no change	0.07834730993908144	0.1749501024605763	AT3G09050	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane;	--	NP_187517.1 8-amino-7-oxononanoate synthase [Arabidopsis thaliana]	27	25	17	21
AT3G09070	no change	0.5061101061120172	-0.4821783757663215	AT3G09070	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0010088,phloem development; GO:0010233,phloem transport; GO:0010588,cotyledon vascular tissue pattern formation; GO:0016020,membrane; GO:0016324,apical plasma membrane; GO:0022622,root system development; GO:0030154,cell differentiation; GO:2000280,regulation of root development;	--	NP_187519.1 LOW protein: UPF0503-like protein, putative (DUF740) [Arabidopsis thaliana]	106	76	61	27
AT3G09150	no change	-0.5765660504798528	-0.3931642446558459	AT3G09150	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0010019,chloroplast-nucleus signaling pathway; GO:0010024,phytochromobilin biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016636,oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor; GO:0050619,phytochromobilin:ferredoxin oxidoreductase activity; GO:0050897,cobalt ion binding;	HY2; phytochromobilin:ferredoxin oxidoreductase [EC:1.3.7.4]; K08101;	NP_566344.2 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) [Arabidopsis thaliana]	29	27	20	9
AT3G09250	no change	0.759922509669488	-0.36445504506636295	AT3G09250	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0009507,chloroplast;	--	NP_566347.1 Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]	84	50	38	30
AT3G09300	no change	-0.2232739233762191	0.02752426772208844	AT3G09300	--	GO:0005829,cytosol; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0015248,sterol transporter activity; GO:0015918,sterol transport; GO:0016020,membrane; GO:0032934,sterol binding; GO:0043231,intracellular membrane-bounded organelle;	--	NP_187541.1 OSBP(oxysterol binding protein)-related protein 3B [Arabidopsis thaliana]	318	257	224	164
AT3G09440	no change	0.49923340210538375	-0.7902617417989857	AT3G09440	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0016363,nuclear matrix; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone;	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283;	NP_001189847.1 Heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]	2533	2289	994	844
AT3G09580	no change	-0.2335923104856336	-0.8066811391737255	AT3G09580	--	GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity;	--	NP_187569.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	42	29	17	10
AT3G09900	no change	-0.6986265091321199	-0.13634036448036052	AT3G09900	--	GO:0000139,Golgi membrane; GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006904,vesicle docking involved in exocytosis; GO:0009306,protein secretion; GO:0015031,protein transport; GO:0016020,membrane; GO:0017157,regulation of exocytosis; GO:0043231,intracellular membrane-bounded organelle;	RAB8A, MEL; Ras-related protein Rab-8A; K07901;	NP_187601.1 RAB GTPase homolog E1E [Arabidopsis thaliana]	105	88	76	42
AT3G10020	no change	-0.02026129693488834	0.04552888713608051	AT3G10020	--	GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009061,anaerobic respiration; GO:0071456,cellular response to hypoxia;	--	NP_566365.1 plant/protein [Arabidopsis thaliana]	414	295	281	202
AT3G10200	no change	0.21368370369515224	-0.9096398848142102	AT3G10200	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_187631.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	23	46	20	6
AT3G10220	no change	0.17831418216200726	-0.1895780297792652	AT3G10220	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009524,phragmoplast; GO:0009793,embryo development ending in seed dormancy; GO:0051301,cell division;	--	NP_187633.2 tubulin folding cofactor B [Arabidopsis thaliana]	117	133	81	65
AT3G10230	no change	0.4388390112834441	0.0347706447360913	AT3G10230	--	GO:0006744,ubiquinone biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016117,carotenoid biosynthetic process; GO:0016120,carotene biosynthetic process; GO:0016123,xanthophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016853,isomerase activity; GO:0016860,intramolecular oxidoreductase activity; GO:0045436,lycopene beta cyclase activity;	lcyB, crtL1, crtY; lycopene beta-cyclase [EC:5.5.1.19]; K06443;	NP_001078131.1 lycopene cyclase [Arabidopsis thaliana]	269	262	192	167
AT3G10350	no change	-0.32101725672940606	-0.4672067267830984	AT3G10350	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043529,GET complex;	--	NP_187646.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	89	72	55	24
AT3G10360	no change	-0.6222072390491009	-0.3453217746516878	AT3G10360	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0006417,regulation of translation; GO:0010608,post-transcriptional regulation of gene expression;	--	NP_187647.2 pumilio 4 [Arabidopsis thaliana]	152	108	62	70
AT3G10405	no change	0.15222951699726678	0.3737997465813237	AT3G10405	--	GO:0009555,pollen development;	--	NP_683545.2 vacuolar acid trehalase [Arabidopsis thaliana]	38	34	36	26
AT3G10400	no change	0.3146636578655039	-0.07679538264475592	AT3G10400	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005689,U12-type spliceosomal complex; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0008380,RNA splicing; GO:0032502,developmental process; GO:0046872,metal ion binding; GO:0051302,regulation of cell division; GO:1990904,ribonucleoprotein complex;	--	NP_187651.1 RNA recognition motif and CCHC-type zinc finger domains containing protein [Arabidopsis thaliana]	19	15	16	6
AT3G10570	no change	-0.5803131953837074	-0.01899460875590568	AT3G10570	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0009908,flower development; GO:0010143,cutin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0052722,fatty acid in-chain hydroxylase activity;	CYP77A; cytochrome P450 family 77 subfamily A [EC:1.14.-.-]; K21995;	NP_187668.1 cytochrome P450, family 77, subfamily A, polypeptide 6 [Arabidopsis thaliana]	1093	929	752	569
AT3G10620	no change	-0.398955667775542	0.45208186396946176	AT3G10620	--	GO:0006753,nucleoside phosphate metabolic process; GO:0008893,guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016462,pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0019693,ribose phosphate metabolic process; GO:0034432,bis(5'-adenosyl)-pentaphosphatase activity; GO:0046872,metal ion binding;	--	NP_187673.1 nudix hydrolase homolog 26 [Arabidopsis thaliana]	62	46	69	31
AT3G10630	no change	0.5845921276066359	0.43793176277239887	AT3G10630	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_566378.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	26	28	29	20
AT3G10850	no change	0.67735730482107	-0.2808407710584931	AT3G10850	--	GO:0004416,hydroxyacylglutathione hydrolase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0019243,methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione; GO:0046872,metal ion binding; GO:0099503,secretory vesicle;	gloB, gloC, HAGH; hydroxyacylglutathione hydrolase [EC:3.1.2.6]; K01069;	NP_187696.1 Metallo-hydrolase/oxidoreductase superfamily protein [Arabidopsis thaliana]	402	367	234	185
AT3G10860	no change	0.3261497408583957	-0.12303919855193592	AT3G10860	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005750,mitochondrial respiratory chain complex III; GO:0005829,cytosol; GO:0006122,mitochondrial electron transport, ubiquinol to cytochrome c; GO:0016020,membrane; GO:0070469,respirasome;	--	NP_001327236.1 Cytochrome b-c1 complex, subunit 8 protein [Arabidopsis thaliana]	261	257	173	142
AT3G10960	no change	0.1763637619697161	-0.4791013516537987	AT3G10960	--	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006863,purine nucleobase transport; GO:0015205,nucleobase transmembrane transporter activity; GO:0015853,adenine transport; GO:0015854,guanine transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1904823,purine nucleobase transmembrane transport;	--	NP_566384.1 AZA-guanine resistant1 [Arabidopsis thaliana]	123	94	49	52
AT3G11020	no change	0.18135668581747855	0.4018821664844164	AT3G11020	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0010286,heat acclimation; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_187713.1 DRE/CRT-binding protein 2B [Arabidopsis thaliana]	9	15	10	11
AT3G11030	no change	0.4092245325625665	0.7929376819074693	AT3G11030	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; GO:1990538,xylan O-acetyltransferase activity; GO:1990937,xylan acetylation;	--	KAG7630802.1 PMR5 N-terminal domain [Arabidopsis suecica]	11	18	25	10
AT3G11420	no change	0.7341998561877661	-0.00239668972438082	AT3G11420	--	GO:0008375,acetylglucosaminyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_187749.1 beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604) [Arabidopsis thaliana]	71	74	58	39
AT3G11560	no change	-0.605619514883536	-0.1470336073263354	AT3G11560	--	GO:0003674,molecular_function; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016020,membrane;	--	NP_001078136.1 LETM1-like protein [Arabidopsis thaliana]	231	177	127	114
AT3G11620	no change	-0.17232533622185134	0.4591172538852392	AT3G11620	--	GO:0005811,lipid droplet; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0019915,lipid storage;	--	NP_001327052.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	26	30	27	24
AT3G11650	no change	0.32805256449392917	-0.7858069003697823	AT3G11650	--	GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0016020,membrane; GO:0051607,defense response to virus; GO:0098542,defense response to other organism;	--	NP_566395.1 NDR1/HIN1-like 2 [Arabidopsis thaliana]	108	99	53	28
AT3G11660	no change	0.1023702066095452	0.12031636079395969	AT3G11660	--	GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0051607,defense response to virus; GO:0098542,defense response to other organism;	--	NP_566396.1 NDR1/HIN1-like 1 [Arabidopsis thaliana]	106	103	70	78
AT3G12020	no change	0.5882159382271364	0.5640192989994821	AT3G12020	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_001325623.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	85	67	103	49
AT3G12060	no change	0.5746724185989103	0.27544388163066286	AT3G12060	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; GO:0030244,cellulose biosynthetic process;	--	ABK28553.1 unknown, partial [Arabidopsis thaliana]	61	70	66	41
AT3G12140	no change	-0.17346758887501967	0.6042026159030678	AT3G12140	--	GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016020,membrane; GO:0050832,defense response to fungus;	--	NP_187821.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Arabidopsis thaliana]	60	46	64	43
AT3G12145	no change	0.1804224898824512	0.05018847544300837	AT3G12145	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016020,membrane; GO:0048471,perinuclear region of cytoplasm; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0048574,long-day photoperiodism, flowering;	--	NP_974291.4 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	5044	4442	3813	2720
AT3G12250	no change	0.26865197062617635	-0.25460164634992793	AT3G12250	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009410,response to xenobiotic stimulus; GO:0009627,systemic acquired resistance; GO:0016787,hydrolase activity; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding;	TGA; transcription factor TGA; K14431;	NP_001326019.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]	11	17	10	6
AT3G12300	no change	0.09930921428006304	0.9319160686226412	AT3G12300	--	--	--	NP_566418.1 cilia/flagella-associated protein [Arabidopsis thaliana]	18	11	14	21
AT3G12650	no change	0.11171479579779647	0.9016298356191876	AT3G12650	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_566431.1 transmembrane protein [Arabidopsis thaliana]	34	42	54	41
AT3G12700	no change	0.30064430538817394	-0.06733507118105017	AT3G12700	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0006508,proteolysis; GO:0007623,circadian rhythm; GO:0008233,peptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009744,response to sucrose; GO:0010019,chloroplast-nucleus signaling pathway; GO:0016787,hydrolase activity;	--	NP_187876.2 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	96	114	76	58
AT3G12750	no change	-0.04766597944140618	-0.2716984606358346	AT3G12750	--	GO:0000041,transition metal ion transport; GO:0005385,zinc ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006829,zinc ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0030001,metal ion transport; GO:0046873,metal ion transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071577,zinc ion transmembrane transport; GO:0098662,inorganic cation transmembrane transport;	--	NP_187881.1 zinc transporter 1 precursor [Arabidopsis thaliana]	54	58	36	26
AT3G12760	no change	0.6478295176485707	-0.03058840275539603	AT3G12760	--	GO:0000151,ubiquitin ligase complex; GO:0005515,protein binding; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032182,ubiquitin-like protein binding; GO:0045116,protein neddylation; GO:0051443,positive regulation of ubiquitin-protein transferase activity; GO:0097602,cullin family protein binding;	--	NP_566436.1 defective in cullin neddylation protein [Arabidopsis thaliana]	137	101	79	73
AT3G12770	no change	0.04715042567227949	-0.23610914447091583	AT3G12770	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0080156,mitochondrial mRNA modification;	--	NP_187883.2 mitochondrial editing factor 22 [Arabidopsis thaliana]	14	28	18	7
AT3G12940	no change	-0.0617390617064067	0.679605176427059	AT3G12940	--	GO:0008150,biological_process;	--	NP_001326289.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	18	17	20	17
AT3G13445	no change	0.6287499403575249	0.25706196171285317	AT3G13445	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006352,DNA-templated transcription initiation; GO:0006366,transcription by RNA polymerase II; GO:0016020,membrane; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0140223,general transcription initiation factor activity;	TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein; K03120;	NP_187953.1 TATA binding protein 1 [Arabidopsis thaliana]	54	31	46	22
AT3G13470	no change	-0.00731816451042901	-0.564603225196034	AT3G13470	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006457,protein folding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0022626,cytosolic ribosome; GO:0042026,protein refolding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0140662,ATP-dependent protein folding chaperone;	groEL, HSPD1; chaperonin GroEL; K04077;	NP_187956.1 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]	659	681	382	229
AT3G13480	no change	0.1431187752471463	-0.690534375098001	AT3G13480	--	GO:0008150,biological_process;	--	NP_001327070.1 nuclear polyadenylated RNA-binding protein [Arabidopsis thaliana]	15	22	12	4
AT3G13530	no change	0.21103298087814223	-0.1510277540615378	AT3G13530	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007049,cell cycle; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0045995,regulation of embryonic development; GO:0046777,protein autophosphorylation; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0051510,regulation of unidimensional cell growth; GO:0061387,regulation of extent of cell growth; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	--	NP_187962.1 mitogen-activated protein kinase kinase kinase 7 [Arabidopsis thaliana]	150	133	102	68
AT3G13672	no change	0.3299265279670792	0.4784130992215842	AT3G13672	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0007275,multicellular organism development; GO:0016567,protein ubiquitination; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:1902584,positive regulation of response to water deprivation; GO:2000785,regulation of autophagosome assembly;	SIAH1; E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]; K04506;	NP_187978.1 TRAF-like superfamily protein [Arabidopsis thaliana]	6	8	7	6
AT3G13720	no change	-0.2293144580384573	-0.32307300897404045	AT3G13720	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	--	NP_566461.1 PRA1 (Prenylated rab acceptor) family protein [Arabidopsis thaliana]	251	294	148	140
AT3G13772	no change	-0.8363408560901767	-0.35327380063268116	AT3G13772	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006811,ion transport; GO:0006878,cellular copper ion homeostasis; GO:0006882,cellular zinc ion homeostasis; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0072657,protein localization to membrane;	--	NP_187991.1 transmembrane nine 7 [Arabidopsis thaliana]	482	441	260	217
AT3G13900	no change	0.15678656503358815	-0.3771780900159215	AT3G13900	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009860,pollen tube growth; GO:0012505,endomembrane system; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity; GO:1905038,regulation of membrane lipid metabolic process;	E7.6.2.1; phospholipid-translocating ATPase [EC:7.6.2.1]; K01530;	NP_188006.4 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]	16	14	7	8
AT3G14067	no change	0.06804615560301648	-0.00843606431359185	AT3G14067	--	GO:0000325,plant-type vacuole; GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0010150,leaf senescence; GO:0010223,secondary shoot formation; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_566473.2 Subtilase family protein [Arabidopsis thaliana]	1016	1031	811	552
AT3G14100	no change	-0.1871666465456873	0.2295130745852844	AT3G14100	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0034063,stress granule assembly; GO:0071456,cellular response to hypoxia;	--	NP_188026.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	233	202	188	149
AT3G14110	no change	-0.20448196324892465	-0.11955144684526402	AT3G14110	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0031408,oxylipin biosynthetic process; GO:0031969,chloroplast membrane; GO:0032991,protein-containing complex; GO:0033014,tetrapyrrole biosynthetic process;	--	NP_566478.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	124	110	88	56
AT3G14310	no change	-0.2626320009104985	-0.23138984417713776	AT3G14310	--	GO:0003729,mRNA binding; GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009620,response to fungus; GO:0009624,response to nematode; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0048046,apoplast; GO:0050829,defense response to Gram-negative bacterium; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_188048.1 pectin methylesterase 3 [Arabidopsis thaliana]	1405	1160	752	679
AT3G14415	no change	-0.9532622281706108	-0.4183089988440522	AT3G14415	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003973,(S)-2-hydroxy-acid oxidase activity; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0010181,FMN binding; GO:0016491,oxidoreductase activity; GO:0042742,defense response to bacterium; GO:0048046,apoplast; GO:0050665,hydrogen peroxide biosynthetic process; GO:0051707,response to other organism;	HAO; (S)-2-hydroxy-acid oxidase [EC:1.1.3.15]; K11517;	NP_001189892.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	1155	965	465	556
AT3G14430	no change	0.5341505939299968	0.8623101347267156	AT3G14430	--	GO:0006979,response to oxidative stress; GO:0016020,membrane;	--	NP_566488.1 GRIP/coiled-coil protein [Arabidopsis thaliana]	212	192	292	198
AT3G14590	no change	-8.460318638838535e-4	0.09878124964048804	AT3G14590	--	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_001189894.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	25	20	19	13
AT3G14650	no change	-0.06675736290440003	-0.06254766566978764	AT3G14650	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_188083.1 cytochrome P450, family 72, subfamily A, polypeptide 11 [Arabidopsis thaliana]	161	131	90	92
AT3G14660	no change	-0.2010549872821186	-0.3024047825752116	AT3G14660	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_001326384.1 cytochrome P450, family 72, subfamily A, polypeptide 13 [Arabidopsis thaliana]	69	35	37	19
AT3G14690	no change	-0.16978996738066388	-0.812459106956751	AT3G14690	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_001325567.1 cytochrome P450, family 72, subfamily A, polypeptide 15 [Arabidopsis thaliana]	74	66	31	22
AT3G15060	no change	0.3184838966447388	0.7237996073813951	AT3G15060	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis;	--	NP_188124.1 RAB GTPase homolog A1G [Arabidopsis thaliana]	19	11	11	20
AT3G15095	no change	-0.5242192351003199	0.0784748795509297	AT3G15095	--	GO:0009507,chloroplast; GO:0010207,photosystem II assembly;	--	NP_188128.1 Serine/Threonine-kinase pakA-like protein [Arabidopsis thaliana]	496	381	287	312
AT3G15190	no change	-0.2095410465015432	-0.43668565584086766	AT3G15190	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S20, rpsT; small subunit ribosomal protein S20; K02968;	NP_188137.1 chloroplast 30S ribosomal protein S20 [Arabidopsis thaliana]	695	654	330	323
AT3G15350	no change	-0.2630165018656163	0.6355575747085067	AT3G15350	--	GO:0015020,glucuronosyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_566506.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	39	43	38	45
AT3G15353	no change	-0.36515116455988184	-0.47659033385252103	AT3G15353	--	GO:0005507,copper ion binding; GO:0006878,cellular copper ion homeostasis; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_001189899.1 metallothionein 3 [Arabidopsis thaliana]	2272	2108	1160	924
AT3G15390	no change	0.36558937204627023	0.44102200407250336	AT3G15390	--	GO:0005829,cytosol; GO:0006952,defense response; GO:0010267,ta-siRNA processing; GO:0031047,gene silencing by RNA;	--	NP_001189900.1 silencing defective 5 [Arabidopsis thaliana]	23	16	31	6
AT3G15460	no change	0.88373581464398	0.8760943349910236	AT3G15460	--	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis;	--	NP_566514.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]	58	56	79	60
AT3G15550	no change	0.5354594598105821	-0.2516462373998074	AT3G15550	--	GO:0008150,biological_process;	--	NP_188174.4 trichohyalin [Arabidopsis thaliana]	112	101	64	54
AT3G15570	no change	-0.3668240613222752	-0.7100406102511382	AT3G15570	--	GO:0016567,protein ubiquitination;	--	NP_188176.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	29	26	11	11
AT3G15630	no change	0.5958233711059282	0.03999504422504501	AT3G15630	--	--	--	NP_566521.1 plant/protein [Arabidopsis thaliana]	71	73	53	45
AT3G15660	no change	0.735224895630691	0.5981645894101967	AT3G15660	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0009249,protein lipoylation; GO:0015036,disulfide oxidoreductase activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	--	NP_001030704.1 glutaredoxin 4 [Arabidopsis thaliana]	101	75	107	70
AT3G15760	no change	0.17312307678895958	-0.3653403465278263	AT3G15760	--	GO:0016020,membrane;	--	NP_566525.1 cytochrome P450 family protein [Arabidopsis thaliana]	13	7	5	5
AT3G15890	no change	-0.8802324554759411	0.6110313446469066	AT3G15890	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004715,non-membrane spanning protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_566530.1 Protein kinase superfamily protein [Arabidopsis thaliana]	49	24	38	34
AT3G15920	no change	0.04284792735929721	-0.09948072422696498	AT3G15920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005829,cytosol; GO:0008289,lipid binding; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding;	--	NP_188213.1 Phox (PX) domain-containing protein [Arabidopsis thaliana]	78	89	64	41
AT3G16010	no change	-0.29558088729662874	0.4869530871125291	AT3G16010	--	GO:0000373,Group II intron splicing; GO:0000963,mitochondrial RNA processing; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0032981,mitochondrial respiratory chain complex I assembly;	--	AAO42273.1 unknown protein [Arabidopsis thaliana]	44	26	30	33
AT3G16175	no change	0.10596391949888448	-0.3700296682302268	AT3G16175	--	GO:0047617,acyl-CoA hydrolase activity;	--	NP_566538.1 Thioesterase superfamily protein [Arabidopsis thaliana]	10	6	4	4
AT3G16370	no change	-0.7581832792950406	0.18489781836929836	AT3G16370	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0048046,apoplast;	--	NP_188258.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	3357	2932	2701	2037
AT3G16380	no change	0.23919173939535615	0.4569345097745923	AT3G16380	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0008143,poly(A) binding; GO:0008266,poly(U) RNA binding; GO:0016071,mRNA metabolic process; GO:1990904,ribonucleoprotein complex;	PABPC; polyadenylate-binding protein; K13126;	NP_188259.1 poly(A) binding protein 6 [Arabidopsis thaliana]	23	10	25	6
AT3G16470	no change	0.31610905373318654	0.01770255241706556	AT3G16470	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009611,response to wounding; GO:0009753,response to jasmonic acid; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0030246,carbohydrate binding;	--	NP_001189913.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	703	754	571	415
AT3G16640	no change	-0.28048612888547364	0.2015744106976191	AT3G16640	--	GO:0000325,plant-type vacuole; GO:0001558,regulation of cell growth; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007346,regulation of mitotic cell cycle; GO:0008017,microtubule binding; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009579,thylakoid; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0009819,drought recovery; GO:0009860,pollen tube growth; GO:0010252,auxin homeostasis; GO:0019904,protein domain specific binding; GO:0031117,positive regulation of microtubule depolymerization; GO:0040014,regulation of multicellular organism growth; GO:0048046,apoplast; GO:0048364,root development; GO:0048527,lateral root development; GO:0048768,root hair cell tip growth; GO:0051301,cell division; GO:0090333,regulation of stomatal closure; GO:0090406,pollen tube;	--	NP_188286.1 translationally controlled tumor protein [Arabidopsis thaliana]	1804	1623	1494	1121
AT3G16785	no change	0.4213943469235314	-0.19709991117152031	AT3G16785	--	GO:0003824,catalytic activity; GO:0004630,phospholipase D activity; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006654,phosphatidic acid biosynthetic process; GO:0008610,lipid biosynthetic process; GO:0009395,phospholipid catabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0031410,cytoplasmic vesicle; GO:0048017,inositol lipid-mediated signaling; GO:0048364,root development; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_001326710.1 phospholipase D P1 [Arabidopsis thaliana]	110	85	57	54
AT3G16990	no change	-0.33926088707382634	0.8877206593823741	AT3G16990	--	GO:0005829,cytosol; GO:0006772,thiamine metabolic process; GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0016787,hydrolase activity; GO:0050334,thiaminase activity;	TENA_E; formylaminopyrimidine deformylase / aminopyrimidine aminohydrolase [EC:3.5.1.- 3.5.99.-]; K20896;	NP_188324.1 heme oxygenase-like, multi-helical [Arabidopsis thaliana]	63	42	69	58
AT3G17100	no change	0.1648033614786493	0.6365430450160384	AT3G17100	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity;	--	NP_566567.1 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	207	147	184	174
AT3G17160	no change	0.5227189537285265	-0.402763588145425	AT3G17160	--	GO:0008150,biological_process;	--	NP_188341.2 hypothetical protein AT3G17160 [Arabidopsis thaliana]	125	136	55	73
AT3G17170	no change	-0.04288152323741515	0.19527965361258295	AT3G17170	--	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0006414,translational elongation; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010071,root meristem specification; GO:0010082,regulation of root meristem growth; GO:0010109,regulation of photosynthesis; GO:0010468,regulation of gene expression; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0042793,plastid transcription; GO:0042794,plastid rRNA transcription; GO:0051644,plastid localization; GO:0070181,small ribosomal subunit rRNA binding; GO:0080022,primary root development; GO:1990904,ribonucleoprotein complex; GO:2000023,regulation of lateral root development; GO:2001279,regulation of unsaturated fatty acid biosynthetic process;	--	NP_566568.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	188	153	157	103
AT3G17220	no change	0.24727298392187275	0.10024225665004095	AT3G17220	--	GO:0004857,enzyme inhibitor activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0012505,endomembrane system; GO:0030599,pectinesterase activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; GO:0048046,apoplast; GO:0090404,pollen tube tip;	--	NP_188348.1 pectin methylesterase inhibitor 2 [Arabidopsis thaliana]	30	8	9	16
AT3G17390	no change	0.2723447361819179	-0.11587576036774974	AT3G17390	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004478,methionine adenosyltransferase activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006555,methionine metabolic process; GO:0006556,S-adenosylmethionine biosynthetic process; GO:0006730,one-carbon metabolic process; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0046872,metal ion binding;	metK; S-adenosylmethionine synthetase [EC:2.5.1.6]; K00789;	NP_188365.1 S-adenosylmethionine synthetase family protein [Arabidopsis thaliana]	8500	5716	4672	3892
AT3G17650	no change	-0.4272785668576501	-0.3876992126280091	AT3G17650	--	GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity;	--	NP_001325744.1 YELLOW STRIPE like 5 [Arabidopsis thaliana]	63	45	29	25
AT3G17790	no change	-0.2930473161665972	-0.19389905517077077	AT3G17790	--	GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0008198,ferrous iron binding; GO:0008199,ferric iron binding; GO:0009986,cell surface; GO:0016491,oxidoreductase activity; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0030643,cellular phosphate ion homeostasis; GO:0042542,response to hydrogen peroxide; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity;	ACP5; tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2]; K14379;	NP_566587.1 purple acid phosphatase 17 [Arabidopsis thaliana]	203	177	141	82
AT3G17920	no change	-0.04528671945538717	-0.47060377271266174	AT3G17920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0019901,protein kinase binding;	--	NP_188419.2 Outer arm dynein light chain 1 protein [Arabidopsis thaliana]	19	24	13	8
AT3G17930	no change	-0.32615879222467914	-0.4658848060970387	AT3G17930	--	GO:0009535,chloroplast thylakoid membrane; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane;	--	NP_566593.1 transmembrane protein [Arabidopsis thaliana]	168	144	82	67
AT3G18030	no change	0.3529836341539186	-0.1756590187034927	AT3G18030	--	GO:0003824,catalytic activity; GO:0004633,phosphopantothenoylcysteine decarboxylase activity; GO:0010181,FMN binding; GO:0015937,coenzyme A biosynthetic process; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0042538,hyperosmotic salinity response; GO:0071513,phosphopantothenoylcysteine decarboxylase complex;	PPCDC, coaC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36]; K01598;	NP_188430.1 HAL3-like protein A [Arabidopsis thaliana]	115	85	84	36
AT3G18050	no change	0.29523829655578226	-0.19652143692790597	AT3G18050	--	GO:0016020,membrane;	--	NP_566596.1 GPI-anchored protein [Arabidopsis thaliana]	239	189	126	118
AT3G18080	no change	0.305304324495362	0.11068128624376328	AT3G18080	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004567,beta-mannosidase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0047668,amygdalin beta-glucosidase activity; GO:0080079,cellobiose glucosidase activity; GO:0080081,4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity; GO:0080082,esculin beta-glucosidase activity; GO:0080083,beta-gentiobiose beta-glucosidase activity; GO:0102483,scopolin beta-glucosidase activity;	bglB; beta-glucosidase [EC:3.2.1.21]; K05350;	NP_188436.1 B-S glucosidase 44 [Arabidopsis thaliana]	838	787	652	511
AT3G18110	no change	-0.2188651864381752	0.1820875420798452	AT3G18110	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009793,embryo development ending in seed dormancy; GO:0031425,chloroplast RNA processing;	--	NP_188439.2 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	139	148	139	81
AT3G18370	no change	0.20917518003598792	-0.17429477621740802	AT3G18370	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0008289,lipid binding;	--	NP_566607.1 C2 domain-containing protein [Arabidopsis thaliana]	158	146	124	59
AT3G18490	no change	0.02074662650749686	-0.03919762653165694	AT3G18490	--	GO:0003677,DNA binding; GO:0004190,aspartic-type endopeptidase activity; GO:0005783,endoplasmic reticulum; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009414,response to water deprivation; GO:0009627,systemic acquired resistance; GO:0009737,response to abscisic acid; GO:0016787,hydrolase activity; GO:0070001,aspartic-type peptidase activity;	--	NP_188478.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	3755	3305	2559	1988
AT3G18680	no change	0.8588696337847311	-0.31968755106214414	AT3G18680	--	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0006225,UDP biosynthetic process; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031425,chloroplast RNA processing; GO:0033862,UMP kinase activity; GO:0042548,regulation of photosynthesis, light reaction; GO:0043621,protein self-association; GO:0044210,'de novo' CTP biosynthetic process; GO:0046940,nucleoside monophosphate phosphorylation; GO:1990825,sequence-specific mRNA binding;	pyrH; uridylate kinase [EC:2.7.4.22]; K09903;	NP_188498.1 Amino acid kinase family protein [Arabidopsis thaliana]	678	590	341	324
AT3G18690	no change	-0.01389325560917904	0.34829125771687364	AT3G18690	--	GO:0002758,innate immune response-activating signal transduction; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response;	MKS1; MAP kinase substrate 1; K20725;	NP_566616.1 MAP kinase substrate 1 [Arabidopsis thaliana]	15	9	6	13
AT3G18780	no change	-0.1823415438308243	-0.4312713647564029	AT3G18780	--	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0007010,cytoskeleton organization; GO:0009644,response to high light intensity; GO:0009735,response to cytokinin; GO:0010053,root epidermal cell differentiation; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0016787,hydrolase activity; GO:0048767,root hair elongation; GO:0048768,root hair cell tip growth;	--	NP_001289901.1 uncharacterized protein LOC104746256 [Camelina sativa]	1879	1632	952	767
AT3G18800	no change	-0.8935252660038168	-0.4470562456384016	AT3G18800	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_566619.1 transmembrane protein [Arabidopsis thaliana]	18	33	18	8
AT3G18860	no change	0.6786587215635933	0.05370094701899646	AT3G18860	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009506,plasmodesma; GO:0010992,ubiquitin recycling; GO:0043130,ubiquitin binding; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process;	PLAA, DOA1, UFD3; phospholipase A-2-activating protein; K14018;	NP_566620.1 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	312	325	243	196
AT3G18870	no change	0.30389958013640195	0.66222250164217	AT3G18870	--	GO:0003690,double-stranded DNA binding; GO:0006353,DNA-templated transcription termination; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009658,chloroplast organization; GO:0032502,developmental process; GO:0042646,plastid nucleoid; GO:0071472,cellular response to salt stress;	--	NP_188517.1 Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	4	9	8	6
AT3G18910	no change	0.3746701001661584	0.2419050859829231	AT3G18910	--	GO:0005515,protein binding;	--	NP_188521.1 EIN2 targeting protein2 [Arabidopsis thaliana]	39	27	38	15
AT3G18930	no change	-0.01797544182489538	-0.10862447942414788	AT3G18930	--	GO:0009507,chloroplast; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031625,ubiquitin protein ligase binding; GO:0031982,vesicle; GO:0046872,metal ion binding;	--	NP_001327213.1 RING/U-box superfamily protein [Arabidopsis thaliana]	50	52	25	36
AT3G18960	no change	0.31304652871515176	0.7721906412120868	AT3G18960	B3	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus;	--	NP_188526.2 AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]	8	7	15	3
AT3G19000	no change	0.366992724842041	0.5072770028047799	AT3G19000	--	GO:0003674,molecular_function; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_566623.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	91	86	100	68
AT3G19020	no change	0.21013314381422504	-0.4863100784276301	AT3G19020	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_188532.2 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	153	124	65	64
AT3G19230	no change	0.15334086920093	-0.3156120547412332	AT3G19230	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_188554.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	22	9	18	0
AT3G19380	no change	0.15863671817689415	-0.301412341239216	AT3G19380	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity; GO:0098542,defense response to other organism;	--	NP_566632.1 plant U-box 25 [Arabidopsis thaliana]	30	43	18	21
AT3G19480	no change	-0.5654458756243091	-0.36584767595424145	AT3G19480	--	GO:0003954,NADH dehydrogenase activity; GO:0004617,phosphoglycerate dehydrogenase activity; GO:0005739,mitochondrion; GO:0006564,L-serine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009643,photosynthetic acclimation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0051287,NAD binding;	serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]; K00058;	KAG7625833.1 S-adenosyl-L-homocysteine hydrolase NAD binding domain [Arabidopsis thaliana x Arabidopsis arenosa]	51	98	42	36
AT3G19490	no change	-0.1925382808364374	-0.29543246679203444	AT3G19490	--	GO:0006811,ion transport; GO:0006814,sodium ion transport; GO:0006848,pyruvate transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane; GO:0050833,pyruvate transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1901475,pyruvate transmembrane transport;	--	NP_566638.1 sodium:hydrogen antiporter 1 [Arabidopsis thaliana]	360	282	200	146
AT3G19780	no change	0.668177806845718	-0.6669692869186122	AT3G19780	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001189936.1 hypothetical protein AT3G19780 [Arabidopsis thaliana]	46	38	20	15
AT3G19790	no change	-0.497113945529964	0.5361509527855804	AT3G19790	--	GO:0008150,biological_process;	--	NP_001078190.1 hypothetical protein AT3G19790 [Arabidopsis thaliana]	48	49	50	43
AT3G19810	no change	0.17056237812659458	0.4511312105129735	AT3G19810	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0042254,ribosome biogenesis; GO:0042644,chloroplast nucleoid;	--	NP_001327235.1 BTB/POZ domain protein, putative (DUF177) [Arabidopsis thaliana]	83	72	78	62
AT3G20670	no change	-0.6562788187690243	-0.583721654610932	AT3G20670	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005829,cytosol; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2A; histone H2A; K11251;	NP_188703.1 histone H2A 13 [Arabidopsis thaliana]	543	611	296	219
AT3G20680	no change	0.08141331945974163	-0.5204310357000407	AT3G20680	--	GO:0005829,cytosol; GO:0009507,chloroplast;	--	NP_188704.1 plant/protein (DUF1995) [Arabidopsis thaliana]	76	85	43	32
AT3G20740	no change	0.2439651517404932	-0.2208900575020815	AT3G20740	--	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005677,chromatin silencing complex; GO:0006325,chromatin organization; GO:0006349,regulation of gene expression by genomic imprinting; GO:0009409,response to cold; GO:0009910,negative regulation of flower development; GO:0010048,vernalization response; GO:0016571,histone methylation; GO:0031491,nucleosome binding; GO:0035098,ESC/E(Z) complex; GO:0043078,polar nucleus; GO:2000014,regulation of endosperm development;	--	NP_188710.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	91	99	74	37
AT3G20790	no change	0.8711634504641312	-0.9661894506687652	AT3G20790	--	GO:0000166,nucleotide binding; GO:0006740,NADPH regeneration; GO:0016491,oxidoreductase activity;	--	NP_188715.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	357	556	152	158
AT3G20800	no change	-0.31846683354513705	-0.10935950844399948	AT3G20800	--	GO:0000932,P-body; GO:0005515,protein binding; GO:0017148,negative regulation of translation; GO:0030015,CCR4-NOT core complex;	RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9; K12606;	NP_188716.1 Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]	190	170	130	92
AT3G20820	no change	0.07457615300101808	0.24375325717366128	AT3G20820	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0048046,apoplast;	--	NP_188718.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	7315	4811	4944	4383
AT3G20830	no change	-0.0538711347735128	-0.49671322682134744	AT3G20830	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_188719.1 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Arabidopsis thaliana]	8	15	6	5
AT3G21055	no change	-0.3225151102595187	-0.5571554550860488	AT3G21055	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane;	--	NP_001319602.1 photosystem II subunit T [Arabidopsis thaliana]	899	984	459	390
AT3G21220	no change	0.3742670881993192	-0.01365255282843024	AT3G21220	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004708,MAP kinase kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0009738,abscisic acid-activated signaling pathway; GO:0010082,regulation of root meristem growth; GO:0010227,floral organ abscission; GO:0010229,inflorescence development; GO:0010365,positive regulation of ethylene biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0051301,cell division; GO:0051510,regulation of unidimensional cell growth; GO:0090333,regulation of stomatal closure; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity;	MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2]; K13413;	NP_001319606.1 MAP kinase kinase 5 [Arabidopsis thaliana]	103	61	64	43
AT3G21230	no change	0.0585561135116181	0.501123120257221	AT3G21230	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0009698,phenylpropanoid metabolic process; GO:0009699,phenylpropanoid biosynthetic process; GO:0016207,4-coumarate-CoA ligase activity; GO:0016405,CoA-ligase activity; GO:0016874,ligase activity; GO:0106286,(E)-caffeate-CoA ligase activity;	4CL; 4-coumarate--CoA ligase [EC:6.2.1.12]; K01904;	NP_188760.3 4-coumarate:CoA ligase 5 [Arabidopsis thaliana]	28	42	19	44
AT3G21270	no change	0.6638181358056257	0.35819355140464426	AT3G21270	Dof	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	AAK76521.1 putative Dof zinc finger protein [Arabidopsis thaliana]	51	62	45	50
AT3G21320	no change	0.42765585780647936	0.3111970806785631	AT3G21320	--	GO:2000028,regulation of photoperiodism, flowering;	--	CAD5323727.1 unnamed protein product [Arabidopsis thaliana]	13	8	4	12
AT3G21560	no change	-0.2533699321829183	-0.15008629995614872	AT3G21560	--	GO:0005737,cytoplasm; GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0009718,anthocyanin-containing compound biosynthetic process; GO:0009801,cinnamic acid ester metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	BRT1; sinapate 1-glucosyltransferase [EC:2.4.1.120]; K13068;	NP_188793.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	107	105	56	68
AT3G21760	no change	-0.8974909515273591	0.05159233382233302	AT3G21760	--	GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_188813.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	121	107	70	83
AT3G21810	no change	0.6970356911254526	0.2076232908288068	AT3G21810	C3H	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0046872,metal ion binding;	--	NP_566691.1 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]	39	43	35	28
AT3G22120	no change	0.6265599812287851	0.8761442211697533	AT3G22120	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_001327425.1 cell wall-plasma membrane linker protein [Arabidopsis thaliana]	666	418	749	557
AT3G22160	no change	0.7396497223508528	0.205911692252644	AT3G22160	--	GO:0005515,protein binding; GO:0005634,nucleus;	--	NP_566699.1 VQ motif-containing protein [Arabidopsis thaliana]	6	16	8	9
AT3G22210	no change	-0.2566674507381078	-0.10358910183445148	AT3G22210	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_566701.1 transmembrane protein [Arabidopsis thaliana]	173	153	114	87
AT3G22520	no change	0.4128800484709406	-0.19236885982003188	AT3G22520	--	GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_188891.1 spindle assembly abnormal protein [Arabidopsis thaliana]	221	269	168	120
AT3G22780	no change	-0.35065242631138915	-0.19304543630306625	AT3G22780	CPP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009934,regulation of meristem structural organization; GO:0010235,guard mother cell cytokinesis; GO:0010481,epidermal cell division; GO:0046872,metal ion binding; GO:0048444,floral organ morphogenesis; GO:0051302,regulation of cell division;	--	NP_566718.2 Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]	204	174	136	85
AT3G22970	no change	0.14530221132885235	0.8839045913616346	AT3G22970	--	--	--	NP_188937.1 hypothetical protein (DUF506) [Arabidopsis thaliana]	195	133	221	176
AT3G23020	no change	-0.0086446297190411	0.3363616523415347	AT3G23020	--	GO:0005515,protein binding; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0010343,singlet oxygen-mediated programmed cell death; GO:1904821,chloroplast disassembly;	--	NP_188942.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	26	26	16	26
AT3G23070	no change	-0.7595234252848324	-0.5235737963237085	AT3G23070	--	GO:0000373,Group II intron splicing; GO:0000375,RNA splicing, via transesterification reactions; GO:0003674,molecular_function; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0048316,seed development; GO:1990904,ribonucleoprotein complex;	--	NP_188947.2 CRM family member 3A [Arabidopsis thaliana]	86	122	59	39
AT3G23080	no change	-0.14226271132501236	-0.31814607644229065	AT3G23080	--	GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_001030744.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	116	115	95	33
AT3G23820	no change	-0.3300065183255243	0.23118806958087265	AT3G23820	--	GO:0000138,Golgi trans cisterna; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0032580,Golgi cisterna membrane; GO:0033481,galacturonate biosynthetic process; GO:0050378,UDP-glucuronate 4-epimerase activity; GO:0050829,defense response to Gram-negative bacterium; GO:0050832,defense response to fungus;	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]; K08679;	NP_189024.1 UDP-D-glucuronate 4-epimerase 6 [Arabidopsis thaliana]	874	745	655	591
AT3G24080	no change	-0.3207829173025864	0.10404432924098404	AT3G24080	--	GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005730,nucleolus; GO:0030686,90S preribosome;	--	NP_001326131.1 KRR1 family protein [Arabidopsis thaliana]	124	127	99	80
AT3G24500	no change	0.29387734364902346	0.3337951419065956	AT3G24500	--	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009873,ethylene-activated signaling pathway; GO:0045893,positive regulation of DNA-templated transcription; GO:0071456,cellular response to hypoxia;	MBF1; putative transcription factor; K03627;	NP_189093.1 multiprotein bridging factor 1C [Arabidopsis thaliana]	10	12	13	6
AT3G24560	no change	0.19731305770444044	-0.6824681073503661	AT3G24560	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006400,tRNA modification; GO:0008033,tRNA processing; GO:0009507,chloroplast; GO:0009658,chloroplast organization; GO:0009793,embryo development ending in seed dormancy; GO:0010098,suspensor development; GO:0016787,hydrolase activity; GO:0016874,ligase activity; GO:0016879,ligase activity, forming carbon-nitrogen bonds;	--	NP_566753.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]	25	12	3	11
AT3G24715	no change	0.4862352011179598	0.00334361577946703	AT3G24715	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006833,water transport; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0071456,cellular response to hypoxia;	--	NP_001319636.1 kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]	9	20	7	12
AT3G24860	no change	-0.02391305163514788	-0.7370165449611115	AT3G24860	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006970,response to osmotic stress; GO:0009651,response to salt stress; GO:0009755,hormone-mediated signaling pathway; GO:0010555,response to mannitol;	--	NP_189130.1 Homeodomain-like superfamily protein [Arabidopsis thaliana]	73	52	26	23
AT3G25020	no change	0.20908852234533115	-0.6050419214623519	AT3G25020	--	GO:0002238,response to molecule of fungal origin; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0016020,membrane; GO:1900150,regulation of defense response to fungus; GO:1902288,regulation of defense response to oomycetes;	--	NP_189138.1 receptor like protein 42 [Arabidopsis thaliana]	17	31	10	11
AT3G25140	no change	-0.06695208576605936	-0.3087011224245766	AT3G25140	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0007155,cell adhesion; GO:0010289,homogalacturonan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	GAUT; alpha-1,4-galacturonosyltransferase [EC:2.4.1.43]; K13648;	NP_189150.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	752	754	470	341
AT3G25150	no change	0.09153466950997484	-0.0030719557262301	AT3G25150	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0043229,intracellular organelle; GO:1990904,ribonucleoprotein complex;	--	NP_189151.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Arabidopsis thaliana]	501	410	368	238
AT3G25470	no change	0.5660889000380669	0.64810237089896	AT3G25470	--	GO:0003723,RNA binding; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_566765.1 bacterial hemolysin-like protein [Arabidopsis thaliana]	103	126	151	92
AT3G25870	no change	0.06734879017837013	-0.3589268484948948	AT3G25870	--	--	--	NP_566782.1 hypothetical protein AT3G25870 [Arabidopsis thaliana]	79	101	53	41
AT3G25910	no change	-0.22498486550702632	0.5005955987661654	AT3G25910	--	GO:0001216,DNA-binding transcription activator activity; GO:0005634,nucleus; GO:0006873,cellular ion homeostasis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0045893,positive regulation of DNA-templated transcription; GO:0071472,cellular response to salt stress;	--	NP_566784.1 MAP kinase kinase kinase, putative (DUF1644) [Arabidopsis thaliana]	161	158	160	138
AT3G25920	no change	-0.01251822156718751	-0.5349695583777179	AT3G25920	--	GO:0000311,plastid large ribosomal subunit; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L15, MRPL15, rplO; large subunit ribosomal protein L15; K02876;	NP_189221.1 ribosomal protein L15 [Arabidopsis thaliana]	460	532	267	192
AT3G26130	no change	-0.03327928837870055	0.8427612688430515	AT3G26130	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016985,mannan endo-1,4-beta-mannosidase activity; GO:0071704,organic substance metabolic process;	--	NP_001327393.1 Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	9	4	13	3
AT3G26440	no change	0.22800164420497265	0.9111611248931284	AT3G26440	--	GO:0005794,Golgi apparatus; GO:0016020,membrane;	--	NP_001189981.1 transmembrane protein, putative (DUF707) [Arabidopsis thaliana]	11	3	10	7
AT3G26450	no change	-0.9629197388607066	0.3430919476327195	AT3G26450	--	GO:0005829,cytosol; GO:0006952,defense response;	--	NP_189276.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	81	61	74	46
AT3G26580	no change	-0.1610743854812745	0.31171490400149154	AT3G26580	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_189290.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	343	265	319	186
AT3G26590	no change	-0.873275457099586	-0.1179461658572412	AT3G26590	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_001326875.1 MATE efflux family protein [Arabidopsis thaliana]	188	165	109	104
AT3G26650	no change	-0.424942480363473	-0.597973284505948	AT3G26650	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006006,glucose metabolic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0031969,chloroplast membrane; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0051289,protein homotetramerization; GO:0097718,disordered domain specific binding; GO:0099080,supramolecular complex; GO:1901149,salicylic acid binding;	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298;	NP_566796.2 glyceraldehyde 3-phosphate dehydrogenase A subunit [Arabidopsis thaliana]	3728	2859	1635	1236
AT3G26740	no change	-0.0105813216484736	0.5275706867573382	AT3G26740	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0007623,circadian rhythm; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0098807,chloroplast thylakoid membrane protein complex;	--	NP_189308.1 CCR-like protein [Arabidopsis thaliana]	743	669	804	553
AT3G27170	no change	0.5919309221263559	0.9053021644188578	AT3G27170	--	GO:0005244,voltage-gated ion channel activity; GO:0005247,voltage-gated chloride channel activity; GO:0005254,chloride channel activity; GO:0005515,protein binding; GO:0006811,ion transport; GO:0006821,chloride transport; GO:0009671,nitrate:proton symporter activity; GO:0009705,plant-type vacuole membrane; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0034707,chloride channel complex; GO:0034765,regulation of ion transmembrane transport; GO:0043231,intracellular membrane-bounded organelle; GO:0055085,transmembrane transport; GO:1902476,chloride transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_189353.1 chloride channel B [Arabidopsis thaliana]	16	14	20	17
AT3G27250	no change	-0.9063370435746524	0.4937585115376683	AT3G27250	--	GO:0005634,nucleus; GO:2000143,negative regulation of DNA-templated transcription initiation;	--	NP_001326277.1 hypothetical protein AT3G27250 [Arabidopsis thaliana]	8	7	8	6
AT3G27690	no change	0.06124853521116562	-0.876850428693999	AT3G27690	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0009941,chloroplast envelope; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0030104,water homeostasis; GO:0046872,metal ion binding; GO:0071215,cellular response to abscisic acid stimulus; GO:0090333,regulation of stomatal closure; GO:1903428,positive regulation of reactive oxygen species biosynthetic process;	LHCB2; light-harvesting complex II chlorophyll a/b binding protein 2; K08913;	NP_001325794.1 photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]	1698	1545	690	486
AT3G27750	no change	-0.4590913226636025	-0.43508427339308686	AT3G27750	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:1990825,sequence-specific mRNA binding;	--	NP_189412.1 PPR containing protein [Arabidopsis thaliana]	20	19	10	9
AT3G27906	no change	0.557742257411887	-0.9007852951918977	AT3G27906	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001319659.1 hypothetical protein AT3G27906 [Arabidopsis thaliana]	25	26	15	4
AT3G28150	no change	-0.3304509442583334	0.49991004903234487	AT3G28150	--	GO:0005794,Golgi apparatus; GO:0010411,xyloglucan metabolic process; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	AXY4, AXY4L; xyloglucan O-acetyltransferase; K23877;	NP_189454.1 TRICHOME BIREFRINGENCE-LIKE 22 [Arabidopsis thaliana]	46	25	29	35
AT3G28730	no change	-0.7991904304556108	0.22566655815656125	AT3G28730	--	GO:0000741,karyogamy; GO:0000791,euchromatin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006355,regulation of DNA-templated transcription; GO:0006974,cellular response to DNA damage stimulus; GO:0010197,polar nucleus fusion; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016043,cellular component organization; GO:0031491,nucleosome binding; GO:0035101,FACT complex; GO:0042393,histone binding;	--	NP_189515.1 high mobility group [Arabidopsis thaliana]	413	376	343	268
AT3G28770	no change	-0.4497046890097709	-0.6701757361095849	AT3G28770	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_189519.1 transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]	126	122	50	52
AT3G28920	no change	0.666435981621168	0.6025950490862738	AT3G28920	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0019760,glucosinolate metabolic process; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding;	--	NP_189534.1 homeobox protein 34 [Arabidopsis thaliana]	91	69	95	66
AT3G29030	no change	-0.7069559938548005	-0.30194746704597886	AT3G29030	--	GO:0005576,extracellular region; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0009826,unidimensional cell growth; GO:0016020,membrane; GO:0071555,cell wall organization; GO:0080022,primary root development;	--	NP_189545.1 expansin A5 [Arabidopsis thaliana]	937	870	487	473
AT3G29130	no change	-0.7746032431476647	0.6489664973246527	AT3G29130	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0032418,lysosome localization; GO:0042803,protein homodimerization activity; GO:0043621,protein self-association; GO:0099078,BORC complex;	--	NP_001326297.1 kxDL motif protein [Arabidopsis thaliana]	8	6	11	4
AT3G29240	no change	0.9362643355882628	-0.0614198398306437	AT3G29240	--	GO:0003674,molecular_function; GO:0009507,chloroplast;	--	NP_566847.1 PPR containing protein (DUF179) [Arabidopsis thaliana]	436	429	256	284
AT3G29320	no change	0.3441292644451997	-0.10251283489359218	AT3G29320	--	GO:0003824,catalytic activity; GO:0004645,1,4-alpha-oligoglucan phosphorylase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005980,glycogen catabolic process; GO:0008152,metabolic process; GO:0008184,glycogen phosphorylase activity; GO:0009266,response to temperature stimulus; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0030170,pyridoxal phosphate binding; GO:0102250,linear malto-oligosaccharide phosphorylase activity; GO:0102499,SHG alpha-glucan phosphorylase activity;	PYG, glgP; glycogen phosphorylase [EC:2.4.1.1]; K00688;	NP_189578.1 Glycosyl transferase, family 35 [Arabidopsis thaliana]	1242	1269	918	646
AT3G29670	no change	0.3172249548617428	0.17131747342474157	AT3G29670	--	GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0050736,O-malonyltransferase activity;	--	NP_189609.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	14	9	15	3
AT3G30380	no change	-0.0955462685428944	-0.648033929128915	AT3G30380	--	GO:0003674,molecular_function;	--	NP_001154655.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	36	40	22	11
AT3G32940	no change	-0.94876166799713	0.7210574103445591	AT3G32940	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0048024,regulation of mRNA splicing, via spliceosome;	--	NP_189783.2 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	64	59	79	56
AT3G33530	no change	-0.9269453234702526	-0.06423796141400066	AT3G33530	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008150,biological_process;	--	NP_001326679.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	267	242	163	156
AT3G43600	no change	0.6101327905922351	-0.4592023404536836	AT3G43600	--	GO:0004031,aldehyde oxidase activity; GO:0005506,iron ion binding; GO:0005737,cytoplasm; GO:0009688,abscisic acid biosynthetic process; GO:0009851,auxin biosynthetic process; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0050302,indole-3-acetaldehyde oxidase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0071949,FAD binding;	AAO1_2; indole-3-acetaldehyde oxidase [EC:1.2.3.7]; K11817;	NP_189946.1 aldehyde oxidase 2 [Arabidopsis thaliana]	47	36	18	21
AT3G44380	no change	-0.9771387350860042	0.7226523592278352	AT3G44380	--	GO:0005575,cellular_component; GO:0009269,response to desiccation;	--	NP_190024.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	25	36	35	32
AT3G44430	no change	0.5980603635423944	-0.4279293003610831	AT3G44430	--	GO:0008150,biological_process;	--	NP_190029.1 transmembrane protein [Arabidopsis thaliana]	7	11	5	4
AT3G44750	no change	-0.2308187777316422	0.6406092224681867	AT3G44750	C2H2	GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048364,root development;	--	NP_566872.1 histone deacetylase 3 [Arabidopsis thaliana]	482	414	486	431
AT3G45060	no change	-0.7049969385604749	0.6088063890936081	AT3G45060	--	GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0015112,nitrate transmembrane transporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0055085,transmembrane transport; GO:0071249,cellular response to nitrate;	NRT, narK, nrtP, nasA; MFS transporter, NNP family, nitrate/nitrite transporter; K02575;	NP_190092.1 high affinity nitrate transporter 2.6 [Arabidopsis thaliana]	28	15	20	22
AT3G45600	no change	0.12476479826859994	0.194025211149146	AT3G45600	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_190146.1 tetraspanin3 [Arabidopsis thaliana]	626	465	470	353
AT3G45630	no change	0.552511504191223	0.340818816386106	AT3G45630	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004842,ubiquitin-protein transferase activity; GO:0009506,plasmodesma; GO:0016567,protein ubiquitination; GO:0030014,CCR4-NOT complex;	CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]; K10643;	NP_001327582.1 RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	77	94	88	58
AT3G45900	no change	0.19856339487616023	0.2777531241572187	AT3G45900	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_190176.2 Ribonuclease P protein subunit P38-like protein [Arabidopsis thaliana]	93	76	80	56
AT3G45980	no change	0.09022620117065788	-0.6629503521144398	AT3G45980	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006334,nucleosome assembly; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2B; histone H2B; K11252;	XP_010503210.1 PREDICTED: histone H2B.6 isoform X1 [Camelina sativa]	617	459	261	188
AT3G46520	no change	0.05363277492448965	-0.6512665508172276	AT3G46520	--	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0007010,cytoskeleton organization; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016787,hydrolase activity;	--	NP_001327017.1 actin-12 [Arabidopsis thaliana]	413	386	161	171
AT3G46650	no change	-0.08418672661441828	0.1689759186776188	AT3G46650	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009506,plasmodesma; GO:0016740,transferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_190249.4 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	8	8	7	5
AT3G46940	no change	0.5076432868451771	-0.39601931860241146	AT3G46940	--	GO:0000287,magnesium ion binding; GO:0004170,dUTP diphosphatase activity; GO:0006226,dUMP biosynthetic process; GO:0006281,DNA repair; GO:0009117,nucleotide metabolic process; GO:0016787,hydrolase activity; GO:0042802,identical protein binding; GO:0046081,dUTP catabolic process; GO:0046872,metal ion binding;	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]; K01520;	NP_001325766.1 DUTP-PYROPHOSPHATASE-LIKE 1 [Arabidopsis thaliana]	182	179	107	76
AT3G46950	no change	-0.43785237890493056	-0.9341422915623008	AT3G46950	--	GO:0003690,double-stranded DNA binding; GO:0006353,DNA-templated transcription termination; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009658,chloroplast organization; GO:0032502,developmental process;	--	NP_190279.1 Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	14	24	5	8
AT3G46990	no change	-0.4161672754261315	0.03863707389131442	AT3G46990	--	GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_190283.1 DUF740 family protein, putative (DUF740) [Arabidopsis thaliana]	18	35	16	20
AT3G47070	no change	-0.22780881588721033	-0.7153465543660539	AT3G47070	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009579,thylakoid; GO:0009941,chloroplast envelope;	--	NP_190291.1 thylakoid soluble phosphoprotein [Arabidopsis thaliana]	148	154	78	46
AT3G47300	no change	0.3213796928167533	-0.28731188609387864	AT3G47300	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005789,endoplasmic reticulum membrane; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	SELENOT; thioredoxin reductase-like selenoprotein T; K22366;	NP_190314.2 SELT-like protein precursor [Arabidopsis thaliana]	57	46	33	23
AT3G47440	no change	0.6405020592513306	-0.8981747234782957	AT3G47440	--	GO:0005739,mitochondrion; GO:0006833,water transport; GO:0015204,urea transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0015840,urea transport; GO:0016020,membrane; GO:0048235,pollen sperm cell differentiation; GO:0055085,transmembrane transport; GO:0071918,urea transmembrane transport; GO:0090406,pollen tube;	--	NP_190328.1 tonoplast intrinsic protein 5;1 [Arabidopsis thaliana]	38	17	10	9
AT3G47460	no change	-0.3822527614320141	0.05006202029017547	AT3G47460	--	GO:0000166,nucleotide binding; GO:0000785,chromatin; GO:0000793,condensed chromosome; GO:0000796,condensin complex; GO:0000819,sister chromatid segregation; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0007049,cell cycle; GO:0007076,mitotic chromosome condensation; GO:0016887,ATP hydrolysis activity; GO:0030261,chromosome condensation; GO:0051276,chromosome organization; GO:0051301,cell division; GO:0051321,meiotic cell cycle;	SMC2; structural maintenance of chromosome 2; K06674;	NP_001325474.1 Structural maintenance of chromosomes (SMC) family protein [Arabidopsis thaliana]	52	41	33	30
AT3G47500	no change	-0.4953257914389143	0.07550114613444847	AT3G47500	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development; GO:0046872,metal ion binding;	--	NP_190334.1 cycling DOF factor 3 [Arabidopsis thaliana]	95	87	97	35
AT3G47550	no change	-0.5488374846271323	-0.14671391647223042	AT3G47550	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016567,protein ubiquitination;	--	NP_190339.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	189	206	114	120
AT3G47800	no change	0.44482061798678935	-0.06428456685760314	AT3G47800	--	GO:0003824,catalytic activity; GO:0004034,aldose 1-epimerase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0016853,isomerase activity; GO:0019318,hexose metabolic process; GO:0030246,carbohydrate binding; GO:0033499,galactose catabolic process via UDP-galactose;	galM, GALM; aldose 1-epimerase [EC:5.1.3.3]; K01785;	NP_190364.1 Galactose mutarotase-like superfamily protein [Arabidopsis thaliana]	201	154	122	101
AT3G47820	no change	-0.28455347425314775	0.6873232041335269	AT3G47820	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_190366.2 PLANT U-BOX 39 [Arabidopsis thaliana]	20	19	20	21
AT3G48120	no change	-0.7564146539053385	0.36755258324849094	AT3G48120	--	GO:0000380,alternative mRNA splicing, via spliceosome; GO:0000398,mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005737,cytoplasm;	--	NP_190395.3 serine/arginine-rich splicing factor [Arabidopsis thaliana]	15	9	10	10
AT3G48150	no change	0.9206012287850346	-0.0377075637946703	AT3G48150	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0007091,metaphase/anaphase transition of mitotic cell cycle; GO:0016567,protein ubiquitination; GO:0030071,regulation of mitotic metaphase/anaphase transition; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0031347,regulation of defense response; GO:0045842,positive regulation of mitotic metaphase/anaphase transition; GO:0051301,cell division;	APC8, CDC23; anaphase-promoting complex subunit 8; K03355;	NP_190398.1 anaphase-promoting complex subunit 8 [Arabidopsis thaliana]	48	26	21	25
AT3G48170	no change	0.21898278468985313	-0.380135831032715	AT3G48170	--	GO:0004029,aldehyde dehydrogenase (NAD+) activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008802,betaine-aldehyde dehydrogenase activity; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019145,aminobutyraldehyde dehydrogenase activity; GO:0019285,glycine betaine biosynthetic process from choline; GO:0031402,sodium ion binding; GO:0046872,metal ion binding; GO:0047105,4-trimethylammoniobutyraldehyde dehydrogenase activity; GO:0047107,gamma-guanidinobutyraldehyde dehydrogenase activity; GO:0110095,cellular detoxification of aldehyde;	betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8]; K00130;	NP_190400.1 aldehyde dehydrogenase 10A9 [Arabidopsis thaliana]	434	443	273	179
AT3G48320	no change	-0.7463686232394608	0.26304471820921677	AT3G48320	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_680111.1 cytochrome P450, family 71, subfamily A, polypeptide 21 [Arabidopsis thaliana]	15	3	9	5
AT3G48580	no change	-0.49676616200238755	-0.26926981205687817	AT3G48580	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005618,cell wall; GO:0005975,carbohydrate metabolic process; GO:0006073,cellular glucan metabolic process; GO:0008152,metabolic process; GO:0010411,xyloglucan metabolic process; GO:0016740,transferase activity; GO:0016762,xyloglucan:xyloglucosyl transferase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030247,polysaccharide binding; GO:0042546,cell wall biogenesis; GO:0048046,apoplast; GO:0071555,cell wall organization;	E2.4.1.207; xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]; K08235;	KAG7633715.1 Glycoside hydrolase family 16 [Arabidopsis suecica]	54	40	27	24
AT3G48780	no change	-0.9537954332793912	-0.4257848855650824	AT3G48780	--	GO:0003824,catalytic activity; GO:0004758,serine C-palmitoyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0009058,biosynthetic process; GO:0009555,pollen development; GO:0009640,photomorphogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0017059,serine C-palmitoyltransferase complex; GO:0030148,sphingolipid biosynthetic process; GO:0030170,pyridoxal phosphate binding; GO:0046512,sphingosine biosynthetic process; GO:0046513,ceramide biosynthetic process;	SPT; serine palmitoyltransferase [EC:2.3.1.50]; K00654;	NP_001325849.1 serine palmitoyltransferase 1 [Arabidopsis thaliana]	191	171	98	80
AT3G48820	no change	-0.4629149673049658	0.10701737831149331	AT3G48820	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008373,sialyltransferase activity; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0097503,sialylation;	--	NP_974404.1 Glycosyltransferase family 29 (sialyltransferase) family protein [Arabidopsis thaliana]	130	79	92	57
AT3G48860	no change	0.7463089428233982	-0.14393322465743036	AT3G48860	--	GO:0000911,cytokinesis by cell plate formation; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0009825,multidimensional cell growth; GO:0016020,membrane; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0051301,cell division;	--	NP_001325715.1 coiled-coil protein [Arabidopsis thaliana]	102	80	42	63
AT3G49100	no change	0.6756309689674717	0.3539373049450118	AT3G49100	--	GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0045900,negative regulation of translational elongation; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP9; signal recognition particle subunit SRP9; K03109;	NP_001327913.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]	32	62	54	29
AT3G49250	no change	0.8229511898486048	0.1612091918155477	AT3G49250	--	GO:0000419,RNA polymerase V complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006306,DNA methylation; GO:0031047,gene silencing by RNA; GO:0042803,protein homodimerization activity; GO:0080188,gene silencing by RNA-directed DNA methylation;	--	NP_566916.1 defective in meristem silencing 3 [Arabidopsis thaliana]	81	72	57	55
AT3G49670	no change	0.4310878537844077	0.01108295990406833	AT3G49670	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0009934,regulation of meristem structural organization; GO:0010075,regulation of meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0048229,gametophyte development; GO:0048437,floral organ development; GO:0106310,protein serine kinase activity;	--	NP_190536.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	914	738	615	483
AT3G49730	no change	0.610258642528195	-0.5410631542186863	AT3G49730	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_001319717.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	24	11	11	5
AT3G49790	no change	0.18813868737275768	0.24229285768892456	AT3G49790	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_190548.1 Carbohydrate-binding protein [Arabidopsis thaliana]	12	10	14	4
AT3G49890	no change	-0.465890744034051	0.1565256745193403	AT3G49890	--	GO:0008150,biological_process;	--	NP_190558.1 hypothetical protein AT3G49890 [Arabidopsis thaliana]	21	26	30	7
AT3G49900	no change	0.3480923931350094	0.4365388346485036	AT3G49900	--	GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001190044.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	124	65	111	59
AT3G50690	no change	-0.5868243079877888	0.3057295731355581	AT3G50690	--	GO:0005515,protein binding; GO:0042393,histone binding;	--	NP_190638.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	210	165	158	145
AT3G50860	no change	0.986323907865056	-0.04357595548913648	AT3G50860	--	GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006886,intracellular protein transport; GO:0006896,Golgi to vacuole transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030117,membrane coat; GO:0030123,AP-3 adaptor complex; GO:0030659,cytoplasmic vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:0043231,intracellular membrane-bounded organelle;	AP3S; AP-3 complex subunit sigma; K12399;	NP_001327312.1 Clathrin adaptor complex small chain family protein [Arabidopsis thaliana]	30	13	15	12
AT3G50890	no change	0.4995337915079974	-0.7386463608433913	AT3G50890	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding;	--	NP_190658.1 homeobox protein 28 [Arabidopsis thaliana]	58	51	23	20
AT3G50900	no change	-0.26116213521662207	-0.773673503912482	AT3G50900	--	--	--	NP_566940.1 hypothetical protein AT3G50900 [Arabidopsis thaliana]	12	13	7	3
AT3G50930	no change	-0.17440125720790076	0.5163532077414149	AT3G50930	--	GO:0000166,nucleotide binding; GO:0002237,response to molecule of bacterial origin; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005740,mitochondrial envelope; GO:0005741,mitochondrial outer membrane; GO:0006950,response to stress; GO:0006952,defense response; GO:0008219,cell death; GO:0009411,response to UV; GO:0009617,response to bacterium; GO:0009626,plant-type hypersensitive response; GO:0009863,salicylic acid mediated signaling pathway; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0042802,identical protein binding;	--	NP_190662.2 cytochrome BC1 synthesi [Arabidopsis thaliana]	24	33	22	31
AT3G50950	no change	0.24463333722724823	0.1422120809473559	AT3G50950	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0016020,membrane; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0043621,protein self-association; GO:0050776,regulation of immune response; GO:0050829,defense response to Gram-negative bacterium; GO:0051707,response to other organism;	--	NP_190664.1 HOPZ-ACTIVATED RESISTANCE 1 [Arabidopsis thaliana]	218	181	175	118
AT3G51390	no change	-0.4017136678219416	-0.8020968352927409	AT3G51390	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006612,protein targeting to membrane; GO:0009651,response to salt stress; GO:0009705,plant-type vacuole membrane; GO:0016020,membrane; GO:0016409,palmitoyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0018230,peptidyl-L-cysteine S-palmitoylation; GO:0019706,protein-cysteine S-palmitoyltransferase activity; GO:0099402,plant organ development;	ZDHHC; palmitoyltransferase [EC:2.3.1.225]; K18932;	NP_001326942.1 DHHC-type zinc finger family protein [Arabidopsis thaliana]	94	78	30	34
AT3G51400	no change	-0.22335732876296516	-0.06136501922226464	AT3G51400	--	GO:0048364,root development; GO:0048367,shoot system development;	--	NP_190708.1 hypothetical protein (DUF241) [Arabidopsis thaliana]	132	99	94	54
AT3G51470	no change	-0.08326049030080525	-0.02908339238255332	AT3G51470	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_001327475.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	74	48	42	36
AT3G51720	no change	0.2353734304663497	-0.2700754299600198	AT3G51720	--	GO:0005829,cytosol; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement;	--	NP_190740.1 WEB family protein (DUF827) [Arabidopsis thaliana]	114	107	60	60
AT3G51740	no change	-0.7749440028495199	-0.1713474694752025	AT3G51740	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane;	--	NP_190742.1 inflorescence meristem receptor-like kinase 2 [Arabidopsis thaliana]	173	140	117	69
AT3G51780	no change	0.602637147738471	0.7449707909551545	AT3G51780	--	GO:0000774,adenyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006612,protein targeting to membrane; GO:0009409,response to cold; GO:0009651,response to salt stress; GO:0010119,regulation of stomatal movement; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0043268,positive regulation of potassium ion transport; GO:0050821,protein stabilization; GO:0051087,chaperone binding; GO:0070971,endoplasmic reticulum exit site;	--	NP_190746.2 BCL-2-associated athanogene 4 [Arabidopsis thaliana]	76	46	71	62
AT3G51880	no change	-0.1624868820765019	-0.2471880023094235	AT3G51880	--	GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006325,chromatin organization; GO:0006355,regulation of DNA-templated transcription; GO:0030527,structural constituent of chromatin;	--	NP_001078269.1 high mobility group B1 [Arabidopsis thaliana]	139	113	78	62
AT3G51990	no change	-0.33896356554418167	-0.4339099789268008	AT3G51990	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_190767.1 Protein kinase superfamily protein [Arabidopsis thaliana]	52	54	49	7
AT3G52040	no change	-0.2975628859607666	0.5360902384543698	AT3G52040	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_190772.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Arabidopsis thaliana]	44	63	68	38
AT3G52060	no change	-0.00844628120874914	0.05996378161247545	AT3G52060	--	GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_190774.1 core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	329	266	239	172
AT3G52070	no change	-0.3764620398379562	0.988531776319181	AT3G52070	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190775.1 RNA/RNP complex-1-interacting phosphatase [Arabidopsis thaliana]	17	3	23	4
AT3G52080	no change	0.5776496465371519	-0.8921093624803663	AT3G52080	--	GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006885,regulation of pH; GO:0012505,endomembrane system; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_190776.2 cation/hydrogen exchanger 28 [Arabidopsis thaliana]	17	32	5	12
AT3G52110	no change	0.1388833197981947	-0.14936600259233412	AT3G52110	--	GO:0003674,molecular_function;	--	NP_001190065.1 interferon-activable protein [Arabidopsis thaliana]	107	96	78	45
AT3G52210	no change	0.19838964831104688	-0.14591758995995435	AT3G52210	--	GO:0003723,RNA binding; GO:0004482,mRNA (guanine-N7-)-methyltransferase activity; GO:0005634,nucleus; GO:0005845,mRNA cap binding complex; GO:0006370,7-methylguanosine mRNA capping; GO:0006397,mRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0106005,RNA 5'-cap (guanine-N7)-methylation;	RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]; K00565;	NP_190789.3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	17	25	17	9
AT3G52220	no change	-0.8961556868667677	0.10118135222829376	AT3G52220	--	GO:0008150,biological_process;	--	NP_566962.1 leukocyte immunoglobulin-like receptor family A protein [Arabidopsis thaliana]	156	164	137	93
AT3G52250	no change	0.4244978809984555	0.4869650116708877	AT3G52250	MYB	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0010468,regulation of gene expression; GO:0010582,floral meristem determinacy; GO:1900055,regulation of leaf senescence; GO:1990619,histone H3-K9 deacetylation; GO:2000617,positive regulation of histone H3-K9 acetylation;	--	NP_001327905.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	183	152	179	132
AT3G52260	no change	-0.9140347575111534	-0.5790970310960655	AT3G52260	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016020,membrane; GO:0016853,isomerase activity;	--	NP_974416.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	38	19	15	10
AT3G52390	no change	-0.3740566528152375	0.7662092725674208	AT3G52390	--	GO:0006259,DNA metabolic process; GO:0008150,biological_process; GO:0008296,3'-5'-exodeoxyribonuclease activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	tatD; TatD DNase family protein [EC:3.1.21.-]; K03424;	NP_190807.3 TatD related DNase [Arabidopsis thaliana]	28	25	15	41
AT3G52430	no change	0.6769612933128334	0.09279051484995704	AT3G52430	--	GO:0001666,response to hypoxia; GO:0002213,defense response to insect; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009751,response to salicylic acid; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0010150,leaf senescence; GO:0010225,response to UV-C; GO:0010310,regulation of hydrogen peroxide metabolic process; GO:0010618,aerenchyma formation; GO:0010942,positive regulation of cell death; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0031348,negative regulation of defense response; GO:0042742,defense response to bacterium; GO:0050829,defense response to Gram-negative bacterium; GO:0051707,response to other organism; GO:0060866,leaf abscission; GO:0071327,cellular response to trehalose stimulus; GO:0080142,regulation of salicylic acid biosynthetic process; GO:0080151,positive regulation of salicylic acid mediated signaling pathway; GO:0106093,EDS1 disease-resistance complex; GO:1900367,positive regulation of defense response to insect; GO:1900426,positive regulation of defense response to bacterium; GO:1901183,positive regulation of camalexin biosynthetic process; GO:2000022,regulation of jasmonic acid mediated signaling pathway; GO:2000031,regulation of salicylic acid mediated signaling pathway;	--	NP_190811.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	20	18	16	11
AT3G52470	no change	0.42535009727654194	0.021794474350898	AT3G52470	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0098542,defense response to other organism;	--	NP_190815.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	111	100	86	57
AT3G52500	no change	0.02023839744845524	-0.16583623642724515	AT3G52500	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity;	--	NP_566966.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	1297	1172	791	661
AT3G52610	no change	0.1739645768981592	0.05238574445519353	AT3G52610	--	GO:0003674,molecular_function;	--	NP_566970.1 GATA zinc finger protein [Arabidopsis thaliana]	111	105	86	63
AT3G52850	no change	0.3619853544302717	-0.05840513182646792	AT3G52850	--	GO:0000139,Golgi membrane; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005768,endosome; GO:0005770,late endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0006623,protein targeting to vacuole; GO:0006896,Golgi to vacuole transport; GO:0007034,vacuolar transport; GO:0009940,amino-terminal vacuolar sorting propeptide binding; GO:0015031,protein transport; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0017119,Golgi transport complex; GO:0030665,clathrin-coated vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:0061630,ubiquitin protein ligase activity;	--	NP_190853.1 vacuolar sorting receptor homolog 1 [Arabidopsis thaliana]	1561	1334	1024	812
AT3G52860	no change	-0.0115696434704873	0.5258265148023004	AT3G52860	--	GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016592,mediator complex; GO:1900055,regulation of leaf senescence;	--	NP_190854.1 mediator of RNA polymerase II transcription subunit-like protein [Arabidopsis thaliana]	15	13	22	6
AT3G53090	no change	-0.6748253969090748	0.46222399735044023	AT3G53090	--	GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity;	UBE3B; ubiquitin-protein ligase E3 B [EC:2.3.2.26]; K10588;	NP_001030850.1 ubiquitin-protein ligase 7 [Arabidopsis thaliana]	41	42	48	29
AT3G53100	no change	-0.1004564830056345	-0.6947990975712374	AT3G53100	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_190878.2 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	39	34	12	17
AT3G53110	no change	0.4135226405759064	-0.3527433343491495	AT3G53110	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008186,ATP-dependent activity, acting on RNA; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009737,response to abscisic acid; GO:0010494,cytoplasmic stress granule; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0051028,mRNA transport;	DDX19, DBP5; ATP-dependent RNA helicase DDX19/DBP5 [EC:3.6.4.13]; K18655;	NP_190879.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	447	419	228	217
AT3G53120	no change	0.863375922925211	0.5775827916789169	AT3G53120	--	GO:0000813,ESCRT I complex; GO:0005515,protein binding; GO:0005768,endosome; GO:0006612,protein targeting to membrane; GO:0006623,protein targeting to vacuole; GO:0006886,intracellular protein transport; GO:0007034,vacuolar transport; GO:0015031,protein transport; GO:0043162,ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; GO:0072666,establishment of protein localization to vacuole;	VPS37; ESCRT-I complex subunit VPS37; K12185;	NP_190880.1 Modifier of rudimentary (Mod(r)) protein [Arabidopsis thaliana]	44	43	58	30
AT3G53460	no change	-0.4588531365079602	0.1114627754266202	AT3G53460	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008266,poly(U) RNA binding; GO:0008380,RNA splicing; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009631,cold acclimation; GO:0043489,RNA stabilization; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	KAG7628360.1 RNA-binding domain superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	1451	1593	1217	972
AT3G53480	no change	-0.8842766598231268	-0.11918635666795968	AT3G53480	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009636,response to toxic substance; GO:0009734,auxin-activated signaling pathway; GO:0009804,coumarin metabolic process; GO:0009926,auxin polar transport; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0015562,efflux transmembrane transporter activity; GO:0016020,membrane; GO:0018901,2,4-dichlorophenoxyacetic acid metabolic process; GO:0048364,root development; GO:0055085,transmembrane transport; GO:0071366,cellular response to indolebutyric acid stimulus; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity; GO:1990641,response to iron ion starvation; GO:1990748,cellular detoxification;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_190916.1 pleiotropic drug resistance 9 [Arabidopsis thaliana]	30	29	20	16
AT3G53530	no change	0.02452465096921484	-0.15613342849545117	AT3G53530	--	GO:0005737,cytoplasm; GO:0046872,metal ion binding;	--	NP_001030852.1 Chloroplast-targeted copper chaperone protein [Arabidopsis thaliana]	64	32	42	16
AT3G53540	no change	0.3943256513023965	-0.29053570233105935	AT3G53540	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_190922.3 afadin [Arabidopsis thaliana]	77	64	42	34
AT3G54050	no change	-0.6026007216836087	-0.25440696057442747	AT3G54050	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005985,sucrose metabolic process; GO:0005986,sucrose biosynthetic process; GO:0006000,fructose metabolic process; GO:0006002,fructose 6-phosphate metabolic process; GO:0006094,gluconeogenesis; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0042132,fructose 1,6-bisphosphate 1-phosphatase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046872,metal ion binding; GO:0048046,apoplast;	FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11]; K03841;	NP_001190083.1 high cyclic electron flow 1 [Arabidopsis thaliana]	2424	2412	1530	1167
AT3G54060	no change	0.19365469881460903	-0.34762842896055357	AT3G54060	--	GO:0008150,biological_process;	--	NP_001030856.1 myosin-M heavy protein [Arabidopsis thaliana]	11	6	1	7
AT3G54080	no change	0.665939161633725	-0.04472125287468138	AT3G54080	--	GO:0003674,molecular_function; GO:0016020,membrane; GO:0030246,carbohydrate binding; GO:0050896,response to stimulus;	--	NP_190976.1 Concanavalin A-like lectin family protein [Arabidopsis thaliana]	405	322	262	203
AT3G54120	no change	0.4434256402946482	-0.28363147451219445	AT3G54120	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009617,response to bacterium; GO:0016020,membrane;	--	NP_190980.1 Reticulon family protein [Arabidopsis thaliana]	8	9	9	1
AT3G54826	no change	-0.01449111171752391	-0.33262073246417984	AT3G54826	--	GO:0005739,mitochondrion; GO:0006457,protein folding; GO:0008270,zinc ion binding; GO:0030150,protein import into mitochondrial matrix; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0051087,chaperone binding;	--	NP_974434.2 Zim17-type zinc finger protein [Arabidopsis thaliana]	78	60	45	28
AT3G54920	no change	-0.47053646227916374	0.00622971116835777	AT3G54920	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0042547,cell wall modification involved in multidimensional cell growth; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	pel; pectate lyase [EC:4.2.2.2]; K01728;	NP_191052.2 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	296	278	219	164
AT3G55030	no change	-0.6768575592532814	-0.5269697504281289	AT3G55030	--	GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006655,phosphatidylglycerol biosynthetic process; GO:0008444,CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; GO:0008654,phospholipid biosynthetic process; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016780,phosphotransferase activity, for other substituted phosphate groups; GO:0030145,manganese ion binding; GO:0043231,intracellular membrane-bounded organelle; GO:0046474,glycerophospholipid biosynthetic process;	pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]; K00995;	NP_191063.1 phosphatidylglycerolphosphate synthase 2 [Arabidopsis thaliana]	50	46	35	11
AT3G55040	no change	-0.01696734797717658	-0.5927162343229772	AT3G55040	--	GO:0004364,glutathione transferase activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0010731,protein glutathionylation; GO:0016740,transferase activity;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_191064.1 glutathione transferase lambda 2 [Arabidopsis thaliana]	102	95	51	36
AT3G55090	no change	-0.9702527103384814	-0.27242005000080904	AT3G55090	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010208,pollen wall assembly; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_191069.2 ABC-2 type transporter family protein [Arabidopsis thaliana]	48	68	39	26
AT3G55420	no change	0.23676145481436897	-0.32208013470713737	AT3G55420	--	--	--	NP_191102.1 hypothetical protein AT3G55420 [Arabidopsis thaliana]	25	26	9	17
AT3G55520	no change	-0.34596690774242256	-0.3160250042924807	AT3G55520	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016853,isomerase activity; GO:0061077,chaperone-mediated protein folding;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_001327833.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	20	29	7	18
AT3G55530	no change	-0.3709847526296806	0.29020355479479887	AT3G55530	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_191112.1 RING/U-box superfamily protein [Arabidopsis thaliana]	26	39	33	21
AT3G55840	no change	0.06977002205278997	0.2944481055171605	AT3G55840	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0019441,tryptophan catabolic process to kynurenine; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_191143.1 Hs1pro-1 protein [Arabidopsis thaliana]	29	39	32	24
AT3G56060	no change	-0.1703713393996883	-0.31131094026278466	AT3G56060	--	GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding;	--	NP_567032.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]	134	98	53	67
AT3G56130	no change	-0.5585234482572439	-0.1446158421116279	AT3G56130	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0045717,negative regulation of fatty acid biosynthetic process;	--	NP_567035.1 biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]	350	317	216	182
AT3G56150	no change	0.32374743811729606	0.29969402295593695	AT3G56150	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0031369,translation initiation factor binding; GO:0033290,eukaryotic 48S preinitiation complex;	EIF3C; translation initiation factor 3 subunit C; K03252;	NP_001190102.1 eukaryotic translation initiation factor 3C [Arabidopsis thaliana]	1896	1874	1755	1332
AT3G56260	no change	-0.4102897735029179	-0.04847735615686244	AT3G56260	--	--	--	NP_001190104.1 hypothetical protein AT3G56260 [Arabidopsis thaliana]	9	6	8	2
AT3G56360	no change	-0.16978996738066388	-0.7432128149063746	AT3G56360	--	GO:0009536,plastid;	--	NP_191195.1 hypothetical protein AT3G56360 [Arabidopsis thaliana]	144	141	69	45
AT3G56410	no change	-0.4523521471150901	0.8872222429215277	AT3G56410	--	GO:1900150,regulation of defense response to fungus;	--	NP_850709.1 hypothetical protein (DUF3133) [Arabidopsis thaliana]	29	21	35	26
AT3G56460	no change	-0.2310842116434722	-0.48206113116559857	AT3G56460	--	GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity;	qor, CRYZ; NADPH:quinone reductase [EC:1.6.5.5]; K00344;	NP_191205.1 GroES-like zinc-binding alcohol dehydrogenase family protein [Arabidopsis thaliana]	446	412	212	192
AT3G56850	no change	-0.7077058888837884	0.38497431790393266	AT3G56850	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009738,abscisic acid-activated signaling pathway; GO:0045893,positive regulation of DNA-templated transcription;	ABF; ABA responsive element binding factor; K14432;	NP_191244.1 ABA-responsive element binding protein 3 [Arabidopsis thaliana]	49	26	42	23
AT3G56900	no change	-0.13306675198764467	-0.5033855120707538	AT3G56900	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005783,endoplasmic reticulum; GO:0006913,nucleocytoplasmic transport; GO:0015031,protein transport; GO:0051028,mRNA transport;	AAAS; aladin; K14320;	NP_191249.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	91	86	42	40
AT3G56940	no change	0.4226328598469996	-0.10640915118449096	AT3G56940	--	GO:0003677,DNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048529,magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity; GO:1901401,regulation of tetrapyrrole metabolic process;	E1.14.13.81, acsF, chlE; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81]; K04035;	NP_191253.1 dicarboxylate diiron protein, putative (Crd1) [Arabidopsis thaliana]	1887	1689	1295	916
AT3G56950	no change	0.32516480685626337	-0.3851901462813329	AT3G56950	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0015267,channel activity; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_001190113.1 small and basic intrinsic protein 2;1 [Arabidopsis thaliana]	149	134	78	65
AT3G57120	no change	-0.1747712347504645	-0.7280418691462138	AT3G57120	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_191271.2 Protein kinase superfamily protein [Arabidopsis thaliana]	30	12	7	9
AT3G57140	no change	-0.28875835850123716	-0.4854613374089112	AT3G57140	--	GO:0004806,triglyceride lipase activity; GO:0005811,lipid droplet; GO:0006629,lipid metabolic process; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity;	TGL4; TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]; K14674;	NP_191273.1 sugar-dependent 1-like protein [Arabidopsis thaliana]	32	25	16	11
AT3G57300	no change	0.46987960168642673	-0.14494200962270365	AT3G57300	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006974,cellular response to DNA damage stimulus; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016444,somatic cell DNA recombination; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0031011,Ino80 complex; GO:0042393,histone binding; GO:0043618,regulation of transcription from RNA polymerase II promoter in response to stress; GO:0045739,positive regulation of DNA repair; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_001319776.1 DNA helicase INO80-like protein [Arabidopsis thaliana]	219	178	112	121
AT3G57350	no change	0.6183595186190004	-0.2569267628249074	AT3G57350	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0006606,protein import into nucleus; GO:0015031,protein transport; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0017056,structural constituent of nuclear pore; GO:0051028,mRNA transport;	NUP93, NIC96; nuclear pore complex protein Nup93; K14309;	NP_191294.5 Nucleoporin interacting component (Nup93/Nic96-like) family protein [Arabidopsis thaliana]	103	103	56	57
AT3G57400	no change	0.1444601379386471	-0.28013579121743	AT3G57400	--	GO:0016020,membrane;	--	NP_191299.1 transmembrane protein [Arabidopsis thaliana]	28	34	13	20
AT3G57720	no change	0.37703463847991536	-0.6628968616562403	AT3G57720	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane;	--	NP_191331.2 Protein kinase superfamily protein [Arabidopsis thaliana]	20	15	5	9
AT3G57790	no change	-0.1452359744273772	-0.08634717155623038	AT3G57790	--	GO:0000325,plant-type vacuole; GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity;	--	NP_001327729.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	82	67	54	39
AT3G57980	no change	-0.29866196682849067	-0.17858059021125725	AT3G57980	MYB_related	GO:0003677,DNA binding; GO:0005515,protein binding;	--	NP_191357.2 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	36	40	21	23
AT3G58100	no change	-0.02759999189179985	-0.3520579629143263	AT3G58100	--	GO:0001872,(1->3)-beta-D-glucan binding; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0070161,anchoring junction;	--	NP_001327504.1 plasmodesmata callose-binding protein 5 [Arabidopsis thaliana]	83	48	32	34
AT3G58130	no change	0.24893302156480815	-0.3838364304446435	AT3G58130	--	GO:0000225,N-acetylglucosaminylphosphatidylinositol deacetylase activity; GO:0005783,endoplasmic reticulum; GO:0006506,GPI anchor biosynthetic process; GO:0016020,membrane; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	PIGL; N-acetylglucosaminylphosphatidylinositol deacetylase [EC:3.5.1.89]; K03434;	NP_001030882.1 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]	21	12	12	5
AT3G58140	no change	0.27180272950435314	-0.01530106347818916	AT3G58140	--	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004826,phenylalanine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006412,translation; GO:0006432,phenylalanyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016874,ligase activity; GO:0043039,tRNA aminoacylation;	FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]; K01889;	NP_567061.1 phenylalanyl-tRNA synthetase class IIc family protein [Arabidopsis thaliana]	226	176	141	120
AT3G58570	no change	0.07118639285266995	-0.32769251333307353	AT3G58570	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	DDX3X, bel; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13]; K11594;	NP_191416.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	401	397	257	169
AT3G58780	no change	-0.2790766800069359	-0.433652125308341	AT3G58780	MIKC_MADS	GO:0000976,transcription cis-regulatory region binding; GO:0000977,RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010047,fruit dehiscence; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046983,protein dimerization activity; GO:0048440,carpel development; GO:0048481,plant ovule development;	--	NP_191437.1 K-box region and MADS-box transcription factor family protein [Arabidopsis thaliana]	79	69	38	34
AT3G59300	no change	0.6088138194845388	0.1890936965316067	AT3G59300	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_567080.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	123	98	87	78
AT3G59310	no change	-0.649914689237988	0.797016010169964	AT3G59310	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_191490.2 solute carrier family 35 protein (DUF914) [Arabidopsis thaliana]	15	16	21	15
AT3G59940	no change	-0.5560587685059374	-0.03226388554320569	AT3G59940	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0016567,protein ubiquitination; GO:0080037,negative regulation of cytokinin-activated signaling pathway; GO:2000762,regulation of phenylpropanoid metabolic process;	--	NP_191553.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	203	163	116	117
AT3G59950	no change	0.7934793668499756	-0.4721769363757139	AT3G59950	--	GO:0004175,endopeptidase activity; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008150,biological_process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity;	ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342;	NP_850722.3 Peptidase family C54 protein [Arabidopsis thaliana]	57	81	44	24
AT3G59970	no change	0.8151324549742663	-0.25554161467574504	AT3G59970	--	GO:0004489,methylenetetrahydrofolate reductase (NAD(P)H) activity; GO:0005829,cytosol; GO:0006555,methionine metabolic process; GO:0009086,methionine biosynthetic process; GO:0016491,oxidoreductase activity; GO:0035999,tetrahydrofolate interconversion; GO:0071949,FAD binding; GO:0106312,methylenetetrahydrofolate reductase NADH activity; GO:0106313,methylenetetrahydrofolate reductase NADPH activity;	metF, MTHFR; methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]; K00297;	NP_191556.1 methylenetetrahydrofolate reductase 1 [Arabidopsis thaliana]	2313	2144	1343	1122
AT3G59980	no change	0.10152244130243428	0.20924316233029705	AT3G59980	--	GO:0000049,tRNA binding; GO:0003674,molecular_function; GO:0003723,RNA binding; GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_191557.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	87	62	57	55
AT3G60080	no change	0.2796541796066037	0.1872945576920934	AT3G60080	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_191567.1 RING/U-box superfamily protein [Arabidopsis thaliana]	27	36	32	17
AT3G60110	no change	-0.32708354643924664	-0.21002173648626968	AT3G60110	MYB_related	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0016573,histone acetylation; GO:0035267,NuA4 histone acetyltransferase complex;	--	NP_567092.4 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	14	22	12	9
AT3G60160	no change	0.3628574642790568	-0.4721139510173148	AT3G60160	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0009624,response to nematode; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	--	NP_191575.2 multidrug resistance-associated protein 9 [Arabidopsis thaliana]	204	216	132	73
AT3G60200	no change	0.4125879435040409	0.6494325332163421	AT3G60200	--	--	--	NP_191579.1 hypothetical protein AT3G60200 [Arabidopsis thaliana]	16	13	22	9
AT3G60220	no change	-0.6027994868888302	0.24488761860727823	AT3G60220	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031625,ubiquitin protein ligase binding; GO:0046872,metal ion binding;	--	NP_191581.1 TOXICOS EN LEVADURA 4 [Arabidopsis thaliana]	41	40	32	31
AT3G60290	no change	-0.35172661044083287	-0.8677905328140227	AT3G60290	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_191588.2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	15	21	6	7
AT3G60320	no change	0.21012966665242563	0.12321500423757692	AT3G60320	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0010167,response to nitrate; GO:0015706,nitrate transmembrane transport; GO:0071249,cellular response to nitrate; GO:0071705,nitrogen compound transport; GO:1901698,response to nitrogen compound;	--	NP_191591.2 bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]	133	78	94	58
AT3G60750	no change	-0.6454286812588571	-0.1746150547405505	AT3G60750	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004802,transketolase activity; GO:0005829,cytosol; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0046872,metal ion binding;	E2.2.1.1, tktA, tktB; transketolase [EC:2.2.1.1]; K00615;	NP_567103.1 Transketolase [Arabidopsis thaliana]	8542	7374	5360	3990
AT3G60810	no change	0.6747036130011307	-0.31081555949781037	AT3G60810	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0008150,biological_process;	--	NP_191640.1 DUF1499 family protein [Arabidopsis thaliana]	70	53	46	21
AT3G60820	no change	-0.5041621933565618	-0.02245071378491676	AT3G60820	--	GO:0000502,proteasome complex; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005839,proteasome core complex; GO:0005886,plasma membrane; GO:0010498,proteasomal protein catabolic process; GO:0019774,proteasome core complex, beta-subunit complex; GO:0050832,defense response to fungus; GO:0051603,proteolysis involved in protein catabolic process;	PSMB1; 20S proteasome subunit beta 6 [EC:3.4.25.1]; K02732;	NP_001190146.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [Arabidopsis thaliana]	698	487	404	357
AT3G61310	no change	0.5325052855440087	0.4942942179484518	AT3G61310	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus;	--	NP_191690.2 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	96	100	100	83
AT3G61360	no change	0.4665129304485185	-0.7147200150956382	AT3G61360	--	GO:0000398,mRNA splicing, via spliceosome; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_191695.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	36	22	18	6
AT3G61460	no change	0.6216781846334166	0.15729580148756842	AT3G61460	--	GO:0008270,zinc ion binding; GO:0009741,response to brassinosteroid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010200,response to chitin; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:1901371,regulation of leaf morphogenesis; GO:1905421,regulation of plant organ morphogenesis;	--	NP_191705.1 brassinosteroid-responsive RING-H2 [Arabidopsis thaliana]	468	397	366	273
AT3G61530	no change	0.255394180690972	0.32639054254670785	AT3G61530	--	GO:0000287,magnesium ion binding; GO:0003824,catalytic activity; GO:0003864,3-methyl-2-oxobutanoate hydroxymethyltransferase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0015940,pantothenate biosynthetic process; GO:0016740,transferase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0050897,cobalt ion binding;	panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]; K00606;	NP_191712.1 Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]	22	15	20	11
AT3G61800	no change	-0.571928126666358	0.05698715758490595	AT3G61800	--	GO:0000993,RNA polymerase II complex binding; GO:0005694,chromosome; GO:0006283,transcription-coupled nucleotide-excision repair; GO:0009411,response to UV;	--	NP_001326668.1 ENTH/VHS protein [Arabidopsis thaliana]	45	31	35	18
AT3G61820	no change	-0.5476955447816244	-0.10595187265376528	AT3G61820	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma;	--	NP_191741.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	1089	988	758	528
AT3G62030	no change	0.351156897245654	-0.5404376125981166	AT3G62030	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003729,mRNA binding; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0006979,response to oxidative stress; GO:0007165,signal transduction; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009642,response to light intensity; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0010555,response to mannitol; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity; GO:0019344,cysteine biosynthetic process; GO:0022626,cytosolic ribosome; GO:0031977,thylakoid lumen; GO:0048046,apoplast;	--	NP_001154684.1 rotamase CYP 4 [Arabidopsis thaliana]	1312	1110	590	505
AT3G62140	no change	0.4595576015820249	0.18461933375337417	AT3G62140	--	GO:0005634,nucleus;	--	NP_191773.2 NEFA-interacting nuclear protein [Arabidopsis thaliana]	43	47	27	39
AT3G62630	no change	0.44495074823464753	-0.05916170444728574	AT3G62630	--	--	--	NP_191822.1 stress response NST1-like protein (DUF1645) [Arabidopsis thaliana]	219	158	134	104
AT3G62660	no change	-0.3380052106826991	0.07077005818748545	AT3G62660	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	--	NP_191825.2 galacturonosyltransferase-like 7 [Arabidopsis thaliana]	79	73	66	41
AT3G62830	no change	0.7462648201603556	-0.037389208074407	AT3G62830	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0008460,dTDP-glucose 4,6-dehydratase activity; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0019305,dTDP-rhamnose biosynthetic process; GO:0032580,Golgi cisterna membrane; GO:0033320,UDP-D-xylose biosynthetic process; GO:0042732,D-xylose metabolic process; GO:0048040,UDP-glucuronate decarboxylase activity; GO:0070403,NAD+ binding;	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]; K08678;	NP_001118893.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	688	614	504	342
AT3G62840	no change	0.3749962949078373	0.2199415461851493	AT3G62840	--	GO:0000387,spliceosomal snRNP assembly; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005682,U5 snRNP; GO:0005685,U1 snRNP; GO:0005686,U2 snRNP; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0030532,small nuclear ribonucleoprotein complex; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:1990904,ribonucleoprotein complex;	SNRPD2, SMD2; small nuclear ribonucleoprotein D2; K11096;	NP_001078331.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	199	199	184	126
AT3G62940	no change	-0.07717637680920642	0.5105630630496711	AT3G62940	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001325819.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	72	56	77	45
AT3G63160	no change	-0.4344052596620569	0.3786862171571554	AT3G63160	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009535,chloroplast thylakoid membrane; GO:0009579,thylakoid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane;	--	NP_191875.1 outer envelope membrane protein [Arabidopsis thaliana]	84	105	75	86
AT3G63180	no change	-0.08028896294664928	-0.5893769894358561	AT3G63180	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0042752,regulation of circadian rhythm;	--	NP_191877.2 TIC-like protein [Arabidopsis thaliana]	95	91	46	36
AT3G63300	no change	0.17732849193268985	0.34305327105633665	AT3G63300	--	GO:0005515,protein binding; GO:0005802,trans-Golgi network; GO:0006892,post-Golgi vesicle-mediated transport; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation;	--	NP_001319826.1 FORKED 1 [Arabidopsis thaliana]	50	59	45	46
AT3G63380	no change	-0.6662174314347523	0.29342005856835374	AT3G63380	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_191897.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]	39	20	26	21
AT3G63400	no change	-0.42657917795243894	0.7034634586702165	AT3G63400	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0008380,RNA splicing; GO:0016018,cyclosporin A binding; GO:0016607,nuclear speck; GO:0016853,isomerase activity;	--	NP_001190169.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	92	96	101	100
AT3G63410	no change	-0.5073208695952185	0.7317586962741277	AT3G63410	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010189,vitamin E biosynthetic process; GO:0010236,plastoquinone biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; GO:0051741,2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity; GO:0051742,2-methyl-6-solanyl-1,4-benzoquinone methyltransferase activity; GO:0071704,organic substance metabolic process; GO:0102550,2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity;	VTE3, APG1; MPBQ/MSBQ methyltransferase [EC:2.1.1.295]; K12502;	NP_191900.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	980	838	1108	885
AT3G63490	no change	0.08229302346906572	-0.49790234800708966	AT3G63490	--	GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L1, MRPL1, rplA; large subunit ribosomal protein L1; K02863;	NP_191908.1 Ribosomal protein L1p/L10e family [Arabidopsis thaliana]	585	580	292	253
AT3G63500	no change	-0.31985481077300165	0.1889688919726072	AT3G63500	--	GO:0001708,cell fate specification; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009880,embryonic pattern specification; GO:0046872,metal ion binding; GO:0090421,embryonic meristem initiation;	--	NP_001326078.1 fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]	200	149	132	127
AT3G63530	no change	-0.42303383107894016	0.6728370330688757	AT3G63530	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0008285,negative regulation of cell population proliferation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0046621,negative regulation of organ growth; GO:0046872,metal ion binding; GO:0048437,floral organ development; GO:0051865,protein autoubiquitination; GO:1900057,positive regulation of leaf senescence;	--	NP_001030922.1 RING/U-box superfamily protein [Arabidopsis thaliana]	65	63	74	61
AT4G00150	no change	0.186256482755408	0.20314995587277504	AT4G00150	GRAS	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0030154,cell differentiation; GO:0043565,sequence-specific DNA binding; GO:0048768,root hair cell tip growth; GO:0051301,cell division;	--	NP_191926.1 GRAS family transcription factor [Arabidopsis thaliana]	25	28	14	25
AT4G00360	no change	0.02776895292319261	0.19092293833608812	AT4G00360	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0006631,fatty acid metabolic process; GO:0006952,defense response; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0018685,alkane 1-monooxygenase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0070330,aromatase activity;	CYP86A4S; fatty acid omega-hydroxylase [EC:1.14.-.-]; K15398;	NP_191946.1 cytochrome P450, family 86, subfamily A, polypeptide 2 [Arabidopsis thaliana]	242	173	178	134
AT4G00450	no change	0.11171479579779647	-0.45043845602369953	AT4G00450	--	GO:0003712,transcription coregulator activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0016592,mediator complex; GO:0040034,regulation of development, heterochronic; GO:0090213,regulation of radial pattern formation;	--	NP_001319832.1 RNA polymerase II transcription mediator [Arabidopsis thaliana]	133	101	59	53
AT4G00490	no change	-0.4930947024605684	-0.47949821940784976	AT4G00490	--	GO:0000272,polysaccharide catabolic process; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016161,beta-amylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102229,amylopectin maltohydrolase activity;	E3.2.1.2; beta-amylase [EC:3.2.1.2]; K01177;	NP_191958.3 beta-amylase 2 [Arabidopsis thaliana]	322	294	193	105
AT4G00500	no change	-0.8930639065113144	-0.8836826958212244	AT4G00500	--	GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process;	--	NP_191959.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	73	30	9	25
AT4G00525	no change	0.09286405769663096	-0.16710565073635386	AT4G00525	--	GO:0008150,biological_process;	--	NP_680547.2 hypothetical protein AT4G00525 [Arabidopsis thaliana]	11	13	12	3
AT4G00660	no change	0.16787084723593193	0.1678528881088487	AT4G00660	--	GO:0000166,nucleotide binding; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0010494,cytoplasmic stress granule; GO:0016032,viral process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017148,negative regulation of translation; GO:0019048,modulation by virus of host process; GO:0033962,P-body assembly; GO:0034063,stress granule assembly; GO:0051028,mRNA transport;	DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]; K12614;	NP_191975.2 RNAhelicase-like 8 [Arabidopsis thaliana]	115	95	78	76
AT4G00670	no change	0.1656404125280787	0.27913005508599775	AT4G00670	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:1901700,response to oxygen-containing compound;	--	NP_191976.2 Remorin family protein [Arabidopsis thaliana]	5	8	8	3
AT4G00750	no change	-0.46698231188082967	-0.6554439936208573	AT4G00750	--	GO:0000139,Golgi membrane; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_191984.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	133	158	67	56
AT4G00752	no change	-0.13742535770217837	0.35253508439921266	AT4G00752	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0043130,ubiquitin binding;	--	NP_680549.3 UBX domain-containing protein [Arabidopsis thaliana]	37	38	27	35
AT4G00895	no change	0.5023195165704806	-0.7437460989392808	AT4G00895	--	GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport;	--	NP_567198.1 ATPase, F1 complex, OSCP/delta subunit protein [Arabidopsis thaliana]	105	135	54	42
AT4G00910	no change	0.36700747435650777	0.8662538237893077	AT4G00910	--	GO:0015743,malate transport; GO:0016020,membrane; GO:0098656,anion transmembrane transport;	--	NP_001319836.1 aluminum activated malate transporter family protein [Arabidopsis thaliana]	5	7	10	5
AT4G00905	no change	0.8533085461835008	0.01793891137522593	AT4G00905	--	--	--	NP_680550.1 NC domain-containing protein-like protein [Arabidopsis thaliana]	13	20	10	12
AT4G01000	no change	0.18557788765029384	0.01477677966816717	AT4G01000	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0007049,cell cycle;	--	NP_001319838.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]	279	228	200	140
AT4G01026	no change	-0.18852044021080813	-0.3368080772732092	AT4G01026	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_567208.1 PYR1-like 7 [Arabidopsis thaliana]	67	84	45	35
AT4G01030	no change	0.26543118247292047	0.3130370189861918	AT4G01030	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0008270,zinc ion binding;	--	NP_192012.2 pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]	13	7	8	8
AT4G01280	no change	-0.14494210630328871	0.3056949428377146	AT4G01280	MYB_related	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_192037.2 Homeodomain-like superfamily protein [Arabidopsis thaliana]	16	18	21	8
AT4G01310	no change	-0.49709042119023705	-0.918515738477946	AT4G01310	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L5, MRPL5, rplE; large subunit ribosomal protein L5; K02931;	NP_192040.1 Ribosomal L5P family protein [Arabidopsis thaliana]	963	799	337	277
AT4G01330	no change	0.6319168586978299	0.08712552441082962	AT4G01330	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_192042.5 Protein kinase superfamily protein [Arabidopsis thaliana]	129	81	87	60
AT4G01575	no change	-0.20995305198462488	0.28631441061396096	AT4G01575	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_567214.1 serine protease inhibitor, Kazal-type family protein [Arabidopsis thaliana]	8	6	5	6
AT4G01700	no change	-0.11813478806473585	-0.7851167232635159	AT4G01700	--	GO:0002239,response to oomycetes; GO:0004568,chitinase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006032,chitin catabolic process; GO:0016998,cell wall macromolecule catabolic process;	--	NP_192079.1 Chitinase family protein [Arabidopsis thaliana]	19	11	10	2
AT4G01870	no change	-0.39018719476968505	-0.6712814573942943	AT4G01870	--	GO:0005829,cytosol; GO:0006508,proteolysis;	--	NP_001329613.1 tolB protein-like protein [Arabidopsis thaliana]	155	145	49	72
AT4G01935	no change	-0.322171619216581	-0.13496169911688383	AT4G01935	--	GO:0016020,membrane;	--	NP_680559.2 insulin-induced protein [Arabidopsis thaliana]	39	44	42	11
AT4G01940	no change	-0.7960473532976227	-0.7356775295968352	AT4G01940	--	GO:0005198,structural molecule activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0097428,protein maturation by iron-sulfur cluster transfer;	--	NP_567219.1 NFU domain protein 1 [Arabidopsis thaliana]	403	360	152	148
AT4G02040	no change	0.6689286219806625	0.40695202938407143	AT4G02040	--	GO:0008150,biological_process;	--	NP_192113.1 hypothetical protein AT4G02040 [Arabidopsis thaliana]	18	13	15	12
AT4G02060	no change	0.02579509250081803	-0.35173942769569966	AT4G02060	--	GO:0000166,nucleotide binding; GO:0000347,THO complex; GO:0000727,double-strand break repair via break-induced replication; GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003697,single-stranded DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006270,DNA replication initiation; GO:0006271,DNA strand elongation involved in DNA replication; GO:0007049,cell cycle; GO:0009555,pollen development; GO:0010182,sugar mediated signaling pathway; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0042555,MCM complex; GO:0046872,metal ion binding; GO:0090329,regulation of DNA-templated DNA replication;	MCM7, CDC47; DNA replication licensing factor MCM7 [EC:3.6.4.12]; K02210;	NP_001190655.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	215	196	118	95
AT4G02200	no change	-0.295241137994824	0.04416948134265311	AT4G02200	--	GO:0005634,nucleus;	--	NP_001154200.1 Drought-responsive family protein [Arabidopsis thaliana]	21	21	12	16
AT4G02210	no change	0.991915968083088	-0.02691750560943633	AT4G02210	--	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0008150,biological_process;	--	NP_001319843.1 Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]	57	65	51	30
AT4G02230	no change	-0.13947824479304807	0.15994375221621462	AT4G02230	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L19e, RPL19; large subunit ribosomal protein L19e; K02885;	NP_192132.1 Ribosomal protein L19e family protein [Arabidopsis thaliana]	371	438	356	251
AT4G02400	no change	-0.3240732059600566	0.933719461211668	AT4G02400	--	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:1990904,ribonucleoprotein complex;	UTP14; U3 small nucleolar RNA-associated protein 14; K14567;	NP_567232.3 U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]	136	138	222	131
AT4G02405	no change	0.769809431000895	0.1804629197933681	AT4G02405	--	GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_974502.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	37	41	39	21
AT4G02510	no change	0.41223091454339056	0.1830851792494364	AT4G02510	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0004888,transmembrane signaling receptor activity; GO:0004930,G protein-coupled receptor activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0007186,G protein-coupled receptor signaling pathway; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0043024,ribosomal small subunit binding; GO:0045036,protein targeting to chloroplast; GO:0045037,protein import into chloroplast stroma; GO:0046872,metal ion binding; GO:0051087,chaperone binding; GO:0061927,TOC-TIC supercomplex I;	--	NP_001319848.1 translocon at the outer envelope membrane of chloroplasts 159 [Arabidopsis thaliana]	1941	1752	1514	1253
AT4G02620	no change	0.19442634065791695	0.6651072485008139	AT4G02620	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0034220,ion transmembrane transport; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F; K02151;	NP_192171.1 vacuolar ATPase subunit F family protein [Arabidopsis thaliana]	263	173	268	188
AT4G02700	no change	0.0968775939011637	-0.21352428468426887	AT4G02700	--	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_192179.1 sulfate transporter 3;2 [Arabidopsis thaliana]	29	15	10	14
AT4G02725	no change	0.4307027431551676	-0.07272703111345463	AT4G02725	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_001078347.1 spindle pole body-associated protein [Arabidopsis thaliana]	151	132	100	78
AT4G02770	no change	-0.6305616852015773	-0.4666593050683816	AT4G02770	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0140547,acquisition of seed longevity;	psaD; photosystem I subunit II; K02692;	NP_192186.1 photosystem I subunit D-1 [Arabidopsis thaliana]	2612	2440	1442	998
AT4G02880	no change	0.3161485660209802	0.5880058070383297	AT4G02880	--	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0005634,nucleus; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_001190665.1 ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]	90	89	97	81
AT4G03140	no change	-0.149633704597963	0.15907946295051378	AT4G03140	--	GO:0005575,cellular_component; GO:0016491,oxidoreductase activity;	--	NP_567251.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	8	9	9	4
AT4G03190	no change	0.5032844942905663	0.1576363545216123	AT4G03190	--	GO:0000822,inositol hexakisphosphate binding; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010011,auxin binding; GO:0010152,pollen maturation; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; GO:0043224,nuclear SCF ubiquitin ligase complex; GO:0045014,carbon catabolite repression of transcription by glucose; GO:0051716,cellular response to stimulus;	--	NP_567255.1 GRR1-like protein 1 [Arabidopsis thaliana]	488	448	416	281
AT4G03410	no change	0.4069651020435071	0.3221992717859598	AT4G03410	--	GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016021,integral component of membrane;	MPV17; protein Mpv17; K13348;	NP_192250.2 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]	25	49	42	22
AT4G03415	no change	-0.5475484091573383	-0.19297081583605133	AT4G03415	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0046872,metal ion binding;	--	NP_001190668.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	155	132	99	68
AT4G03600	no change	-0.8653219054727871	0.1870303494424354	AT4G03600	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_567259.1 pyrroline-5-carboxylate reductase [Arabidopsis thaliana]	4	13	6	7
AT4G04220	no change	-0.3640964356171451	-0.652725096743792	AT4G04220	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_192331.2 receptor like protein 46 [Arabidopsis thaliana]	13	16	5	7
AT4G04320	no change	-0.30683714697779935	-0.054626768034448	AT4G04320	--	GO:0005759,mitochondrial matrix; GO:0005777,peroxisome; GO:0005782,peroxisomal matrix; GO:0005829,cytosol; GO:0006085,acetyl-CoA biosynthetic process; GO:0006633,fatty acid biosynthetic process; GO:0046321,positive regulation of fatty acid oxidation; GO:0050080,malonyl-CoA decarboxylase activity; GO:2001294,malonyl-CoA catabolic process;	MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]; K01578;	NP_192341.2 malonyl-CoA decarboxylase family protein [Arabidopsis thaliana]	49	58	29	38
AT4G04330	no change	-0.2394520479742112	0.18799832210204337	AT4G04330	--	GO:0006457,protein folding; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0044183,protein folding chaperone; GO:0061077,chaperone-mediated protein folding; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_567263.1 Chaperonin-like RbcX protein [Arabidopsis thaliana]	40	55	43	30
AT4G04460	no change	0.6740837701806034	-0.9396492091239476	AT4G04460	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0006629,lipid metabolic process; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; GO:0046686,response to cadmium ion;	--	NP_001190671.1 Saposin-like aspartyl protease family protein [Arabidopsis thaliana]	4491	3947	1687	1234
AT4G04470	no change	-0.02851603069668554	-0.14919020761481633	AT4G04470	--	GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0016020,membrane; GO:0016021,integral component of membrane;	PXMP2, PMP22; peroxisomal membrane protein 2; K13347;	NP_001319865.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]	93	73	36	59
AT4G04630	no change	-0.619594984751078	-0.02912203978808025	AT4G04630	--	--	--	NP_567264.1 senescence regulator (Protein of unknown function, DUF584) [Arabidopsis thaliana]	51	37	44	15
AT4G04870	no change	0.04952536677154937	0.12998927860083498	AT4G04870	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006629,lipid metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0008808,cardiolipin synthase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016780,phosphotransferase activity, for other substituted phosphate groups; GO:0030145,manganese ion binding; GO:0032049,cardiolipin biosynthetic process; GO:0043337,cardiolipin synthase (CMP-forming); GO:0046474,glycerophospholipid biosynthetic process;	CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]; K08744;	NP_567273.1 cardiolipin synthase [Arabidopsis thaliana]	79	66	44	58
AT4G05060	no change	0.25022467651921576	0.41064271490284854	AT4G05060	--	GO:0003674,molecular_function; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization;	--	NP_567287.1 PapD-like superfamily protein [Arabidopsis thaliana]	45	39	37	36
AT4G05150	no change	0.3864664597138231	-0.1054081295753777	AT4G05150	--	GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0046777,protein autophosphorylation;	--	NP_567290.1 Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]	188	152	125	85
AT4G05320	no change	0.09124214672994084	-0.04378472196525627	AT4G05320	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009751,response to salicylic acid; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	XP_003627151.1 polyubiquitin isoform X1 [Medicago truncatula]	3816	3850	2943	2036
AT4G05460	no change	0.4131720581276318	0.21052744822876193	AT4G05460	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination;	--	NP_567294.1 RNI-like superfamily protein [Arabidopsis thaliana]	46	31	25	32
AT4G06744	no change	0.14294505185885262	0.6291980564366485	AT4G06744	--	GO:0003674,molecular_function; GO:0005576,extracellular region;	--	NP_849339.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	98	92	100	93
AT4G08320	no change	0.395637067147725	-0.5066255656602282	AT4G08320	--	GO:0005515,protein binding; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0016020,membrane; GO:0060090,molecular adaptor activity; GO:0072380,TRC complex;	--	NP_192572.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	56	38	22	21
AT4G08460	no change	0.13653802712603663	0.3057747241554064	AT4G08460	--	GO:0003674,molecular_function;	--	NP_001190691.1 hypothetical protein (DUF1644) [Arabidopsis thaliana]	64	57	61	39
AT4G08590	no change	0.22357731272553907	0.2154347827084044	AT4G08590	--	GO:0003677,DNA binding; GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008327,methyl-CpG binding; GO:0010216,maintenance of DNA methylation; GO:0010424,DNA methylation on cytosine within a CG sequence; GO:0010428,methyl-CpNpG binding; GO:0010429,methyl-CpNpN binding; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0042393,histone binding; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_192599.2 ORTHRUS-like protein [Arabidopsis thaliana]	19	14	13	12
AT4G08690	no change	-0.3335947249809907	0.3125504777315561	AT4G08690	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0008526,phosphatidylinositol transfer activity; GO:0015914,phospholipid transport; GO:0120009,intermembrane lipid transfer;	--	NP_001031598.1 Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]	40	34	46	17
AT4G08850	no change	-0.17938574787425066	-0.2929806363174916	AT4G08850	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0002213,defense response to insect; GO:0002237,response to molecule of bacterial origin; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009695,jasmonic acid biosynthetic process; GO:0009755,hormone-mediated signaling pathway; GO:0009759,indole glucosinolate biosynthetic process; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031349,positive regulation of defense response; GO:0042277,peptide binding; GO:0080027,response to herbivore; GO:0090406,pollen tube; GO:0106310,protein serine kinase activity; GO:1901653,cellular response to peptide;	--	NP_849538.2 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	73	53	40	28
AT4G08870	no change	-0.5796322119689373	0.4584912590972135	AT4G08870	--	GO:0000050,urea cycle; GO:0004053,arginase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006525,arginine metabolic process; GO:0006560,proline metabolic process; GO:0006570,tyrosine metabolic process; GO:0006591,ornithine metabolic process; GO:0008783,agmatinase activity; GO:0009445,putrescine metabolic process; GO:0009446,putrescine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0033388,putrescine biosynthetic process from arginine; GO:0033389,putrescine biosynthetic process from arginine, using agmatinase; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0050897,cobalt ion binding;	E3.5.3.1, rocF, arg; arginase [EC:3.5.3.1]; K01476;	NP_192626.1 Arginase/deacetylase superfamily protein [Arabidopsis thaliana]	290	251	299	197
AT4G08930	no change	0.6512773638784308	-0.2793221634500737	AT4G08930	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_192632.2 APR-like 6 [Arabidopsis thaliana]	38	26	16	18
AT4G08940	no change	-0.04089012265365038	0.4904740694043161	AT4G08940	--	GO:0003723,RNA binding; GO:0006979,response to oxidative stress; GO:0016787,hydrolase activity;	--	NP_192633.2 Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]	11	14	21	4
AT4G09010	no change	0.42017330045513734	-0.9465727838219046	AT4G09010	--	GO:0000302,response to reactive oxygen species; GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0031977,thylakoid lumen; GO:0034599,cellular response to oxidative stress; GO:0042744,hydrogen peroxide catabolic process; GO:0098869,cellular oxidant detoxification;	E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11]; K00434;	NP_192640.1 ascorbate peroxidase 4 [Arabidopsis thaliana]	306	265	99	95
AT4G09640	no change	-0.17657845753189794	-0.15287018689552664	AT4G09640	--	GO:0005768,endosome; GO:0005769,early endosome; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0015095,magnesium ion transmembrane transporter activity; GO:0015693,magnesium ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1903830,magnesium ion transmembrane transport;	--	NP_192702.2 magnesium transporter, putative (DUF803) [Arabidopsis thaliana]	44	43	24	27
AT4G09750	no change	0.4017004962135274	-0.06348807143597299	AT4G09750	--	GO:0005829,cytosol;	DHRS12; dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-]; K11168;	NP_192713.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	100	81	68	47
AT4G10110	no change	0.14034018058929787	0.5351186752379673	AT4G10110	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0062141,nuclear exosome targeting complex;	SF3B4, SAP49; splicing factor 3B subunit 4; K12831;	NP_192749.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	43	35	44	31
AT4G10120	no change	-0.7947801513215013	-0.144305147378361	AT4G10120	--	GO:0005829,cytosol; GO:0005985,sucrose metabolic process; GO:0005986,sucrose biosynthetic process; GO:0016157,sucrose synthase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0046524,sucrose-phosphate synthase activity;	E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]; K00696;	NP_001031609.1 Sucrose-phosphate synthase family protein [Arabidopsis thaliana]	147	155	87	92
AT4G10270	no change	-0.5385695069123989	0.6270886590921486	AT4G10270	--	--	--	NP_192765.1 Wound-responsive family protein [Arabidopsis thaliana]	41	27	34	34
AT4G10640	no change	0.35411751641528244	0.7097241732776097	AT4G10640	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_192802.2 IQ-domain 16 [Arabidopsis thaliana]	6	7	7	7
AT4G10750	no change	0.8546029020800078	0.515893113077819	AT4G10750	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009536,plastid; GO:0016832,aldehyde-lyase activity; GO:0043231,intracellular membrane-bounded organelle;	--	NP_192813.1 Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]	286	249	300	209
AT4G10800	no change	0.5458273241393462	-0.11554748343757784	AT4G10800	--	GO:0016567,protein ubiquitination;	--	NP_001328822.1 BTB/POZ domain protein [Arabidopsis thaliana]	9	9	6	5
AT4G10920	no change	0.9597853602816944	0.00120534256774787	AT4G10920	--	GO:0003677,DNA binding; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0060261,positive regulation of transcription initiation by RNA polymerase II;	--	NP_001078372.1 transcriptional coactivator p15 (PC4) family protein (KELP) [Arabidopsis thaliana]	104	74	76	43
AT4G11440	no change	-0.02996014400965488	0.5812052175783823	AT4G11440	--	GO:0000095,S-adenosyl-L-methionine transmembrane transporter activity; GO:0005743,mitochondrial inner membrane; GO:0016020,membrane; GO:1901962,S-adenosyl-L-methionine transmembrane transport;	--	NP_001319903.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	9	29	22	17
AT4G11660	no change	-0.1789139383197285	0.36421233778080986	AT4G11660	HSF	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0071456,cellular response to hypoxia;	--	KAG7615619.1 Heat shock factor (HSF)-type DNA-binding [Arabidopsis thaliana x Arabidopsis arenosa]	13	13	6	15
AT4G11670	no change	0.31232116237457874	-0.1410007537331203	AT4G11670	--	--	--	NP_001329079.1 DNA topoisomerase 4 subunit B (DUF810) [Arabidopsis thaliana]	47	46	37	20
AT4G12390	no change	0.15552485925964435	-0.7769086423914143	AT4G12390	--	GO:0004857,enzyme inhibitor activity; GO:0009506,plasmodesma; GO:0043086,negative regulation of catalytic activity;	--	NP_192976.1 pectin methylesterase inhibitor 1 [Arabidopsis thaliana]	9	25	10	4
AT4G12830	no change	-0.18272932933243696	-0.5012221877689164	AT4G12830	--	GO:0003824,catalytic activity; GO:0016787,hydrolase activity;	--	NP_567394.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	39	30	23	10
AT4G13170	no change	-0.2958897305637438	0.8673924943108429	AT4G13170	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0015934,large ribosomal subunit; GO:0017148,negative regulation of translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae; K02872;	NP_193053.1 Ribosomal protein L13 family protein [Arabidopsis thaliana]	418	302	471	390
AT4G13250	no change	0.09096263131462504	0.1596515759616025	AT4G13250	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010304,PSII associated light-harvesting complex II catabolic process; GO:0015996,chlorophyll catabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0034256,chlorophyll(ide) b reductase activity;	NOL, NYC1; chlorophyll(ide) b reductase [EC:1.1.1.294]; K13606;	NP_001190716.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	1174	1189	1018	743
AT4G13340	no change	-0.6318392340316122	-0.00580810041944668	AT4G13340	--	GO:0005199,structural constituent of cell wall; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0042277,peptide binding; GO:0071555,cell wall organization; GO:0099503,secretory vesicle;	--	NP_193070.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	112	106	81	63
AT4G13370	no change	0.3223458863648146	-0.688142722231394	AT4G13370	--	GO:0005874,microtubule; GO:0008017,microtubule binding;	--	NP_193073.1 serine/arginine repetitive matrix protein, putative (DUF936) [Arabidopsis thaliana]	127	113	52	46
AT4G13500	no change	-0.1394456028763855	-0.40583990338433246	AT4G13500	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0016020,membrane;	--	NP_193086.1 transmembrane protein [Arabidopsis thaliana]	7	13	10	1
AT4G13830	no change	0.0454033691463958	-0.424051499536642	AT4G13830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010322,regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0061077,chaperone-mediated protein folding; GO:1902395,regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity;	--	NP_001329024.1 DNAJ-like 20 [Arabidopsis thaliana]	130	73	57	42
AT4G14000	no change	0.14136798347763926	0.37385531715151626	AT4G14000	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_567417.1 Putative methyltransferase family protein [Arabidopsis thaliana]	87	92	85	69
AT4G14090	no change	-0.40975738519773247	0.4567475896314639	AT4G14090	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009698,phenylpropanoid metabolic process; GO:0009718,anthocyanin-containing compound biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0080018,anthocyanin 5-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT75C1; anthocyanidin 3-O-glucoside 5-O-glucosyltransferase [EC:2.4.1.298]; K12338;	AAL69494.1 putative glucosyltransferase, partial [Arabidopsis thaliana]	12	19	18	11
AT4G14270	no change	-0.4122008289325362	0.16363376257748413	AT4G14270	--	--	--	NP_001319936.1 polyadenylate-binding protein interacting protein [Arabidopsis thaliana]	1067	703	632	647
AT4G14430	no change	0.23252145216284756	-0.2313737695518501	AT4G14430	--	GO:0003824,catalytic activity; GO:0004165,delta(3)-delta(2)-enoyl-CoA isomerase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0009062,fatty acid catabolic process; GO:0016853,isomerase activity; GO:0048767,root hair elongation; GO:0080024,indolebutyric acid metabolic process; GO:0080026,response to indolebutyric acid;	ECI1_2; Delta3-Delta2-enoyl-CoA isomerase [EC:5.3.3.8]; K07517;	NP_193179.1 indole-3-butyric acid response 10 [Arabidopsis thaliana]	378	255	179	171
AT4G14500	no change	-0.7747624705823081	-0.13203140257163282	AT4G14500	--	GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_001154233.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	166	174	103	101
AT4G14510	no change	0.2250292945253573	0.6099589366280487	AT4G14510	--	GO:0000373,Group II intron splicing; GO:0000375,RNA splicing, via transesterification reactions; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006364,rRNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042794,plastid rRNA transcription; GO:0048316,seed development; GO:1990904,ribonucleoprotein complex;	--	NP_193187.3 CRM family member 3B [Arabidopsis thaliana]	44	53	51	47
AT4G14540	no change	-0.8096634937840836	0.7617952791746505	AT4G14540	NF-YB	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0016602,CCAAT-binding factor complex; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046982,protein heterodimerization activity;	NFYB, HAP3; nuclear transcription Y subunit beta; K08065;	NP_193190.1 nuclear factor Y, subunit B3 [Arabidopsis thaliana]	94	97	140	79
AT4G14550	no change	-0.39596264896683214	0.05649613389156829	AT4G14550	--	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010102,lateral root morphogenesis; GO:0016020,membrane; GO:0045892,negative regulation of DNA-templated transcription;	IAA; auxin-responsive protein IAA; K14484;	NP_193191.2 indole-3-acetic acid inducible 14 [Arabidopsis thaliana]	17	17	16	8
AT4G14770	no change	0.01996416984409821	0.13705273872506746	AT4G14770	CPP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010375,stomatal complex patterning; GO:0010440,stomatal lineage progression; GO:0046872,metal ion binding;	--	NP_193213.5 TESMIN/TSO1-like CXC 2 [Arabidopsis thaliana]	60	82	55	49
AT4G14830	no change	-0.06736863151254899	-0.4073448003351282	AT4G14830	--	GO:0005515,protein binding;	--	NP_193219.1 17.6 kDa class II heat shock protein [Arabidopsis thaliana]	19	11	4	10
AT4G14840	no change	-0.4783763393485004	0.8823229983811292	AT4G14840	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001329887.1 spindle assembly abnormal protein [Arabidopsis thaliana]	5	10	12	7
AT4G14870	no change	-0.7424628865949199	0.33980264210680533	AT4G14870	--	GO:0005515,protein binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0008320,protein transmembrane transporter activity; GO:0009306,protein secretion; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0071806,protein transmembrane transport;	--	NP_567446.1 secE/sec61-gamma protein transport protein [Arabidopsis thaliana]	118	149	152	79
AT4G14880	no change	-0.9109655793975298	-0.8180207702270208	AT4G14880	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004124,cysteine synthase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006535,cysteine biosynthetic process from serine; GO:0007568,aging; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009567,double fertilization forming a zygote and endosperm; GO:0009570,chloroplast stroma; GO:0009860,pollen tube growth; GO:0016740,transferase activity; GO:0019344,cysteine biosynthetic process; GO:0046686,response to cadmium ion; GO:0048046,apoplast;	cysK; cysteine synthase [EC:2.5.1.47]; K01738;	NP_001190732.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1 [Arabidopsis thaliana]	994	793	346	317
AT4G14900	no change	-0.09231800179791862	-0.3406424638915453	AT4G14900	--	GO:0005515,protein binding; GO:0009908,flower development; GO:0030154,cell differentiation;	--	NP_567447.1 FRIGIDA-like protein [Arabidopsis thaliana]	276	213	146	109
AT4G15130	no change	-0.5067489454203963	0.03029281118990674	AT4G15130	--	--	PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]; K00968;	NP_193249.5 phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	54	65	50	32
AT4G15140	no change	0.16598618251699662	-0.1265321687763483	AT4G15140	--	--	--	NP_567459.5 hypothetical protein AT4G15140 [Arabidopsis thaliana]	32	33	19	20
AT4G15480	no change	-0.6678743007807899	-0.6483853992195466	AT4G15480	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0010224,response to UV-B; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047218,hydroxycinnamate 4-beta-glucosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0050412,cinnamate beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_193283.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	55	76	20	34
AT4G15530	no change	0.14463820709120084	-0.6504749616032207	AT4G15530	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006090,pyruvate metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015979,photosynthesis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0050242,pyruvate, phosphate dikinase activity;	ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]; K01006;	NP_193288.2 pyruvate orthophosphate dikinase [Arabidopsis thaliana]	651	688	273	286
AT4G15550	no change	-0.477531094004929	-0.8838481242814614	AT4G15550	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567471.1 indole-3-acetate beta-D-glucosyltransferase [Arabidopsis thaliana]	156	122	54	45
AT4G15830	no change	0.03065037414812223	-0.05576257371530709	AT4G15830	--	GO:0000226,microtubule cytoskeleton organization; GO:0005881,cytoplasmic microtubule; GO:0008017,microtubule binding;	--	NP_567477.1 ARM repeat superfamily protein [Arabidopsis thaliana]	189	204	148	105
AT4G16190	no change	-0.31613122725310866	-0.7468800883304794	AT4G16190	--	GO:0000323,lytic vacuole; GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process;	CTSF; cathepsin F [EC:3.4.22.41]; K01373;	NP_567489.1 Papain family cysteine protease [Arabidopsis thaliana]	4784	4377	1999	1611
AT4G16310	no change	0.1603251286378542	-0.19573804874087605	AT4G16310	--	GO:0005515,protein binding; GO:0006325,chromatin organization; GO:0006598,polyamine catabolic process; GO:0016491,oxidoreductase activity; GO:0046592,polyamine oxidase activity;	--	NP_001319957.1 LSD1-like 3 [Arabidopsis thaliana]	150	167	101	83
AT4G16330	no change	-0.21716230292957808	0.25519629887542516	AT4G16330	--	GO:0005777,peroxisome; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_567491.5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	56	59	55	37
AT4G16380	no change	0.13553160066484238	-0.02036059215595032	AT4G16380	--	GO:0009506,plasmodesma; GO:0046872,metal ion binding; GO:1900150,regulation of defense response to fungus;	--	AAL38281.1 unknown protein [Arabidopsis thaliana]	66	87	67	36
AT4G16420	no change	-0.280033700766915	-0.11045111786150104	AT4G16420	--	GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006338,chromatin remodeling; GO:0006357,regulation of transcription by RNA polymerase II; GO:0008270,zinc ion binding; GO:0009631,cold acclimation; GO:0009733,response to auxin; GO:0009735,response to cytokinin; GO:0016570,histone modification; GO:0016571,histone methylation; GO:0035065,regulation of histone acetylation; GO:0035066,positive regulation of histone acetylation; GO:0042127,regulation of cell population proliferation; GO:0043229,intracellular organelle; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0080090,regulation of primary metabolic process;	--	NP_974560.1 ADA2 2B [Arabidopsis thaliana]	156	180	113	94
AT4G16440	no change	0.4958504155117986	-0.0374426801040033	AT4G16440	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0070482,response to oxygen levels;	--	CAD5328120.1 unnamed protein product [Arabidopsis thaliana]	89	95	76	45
AT4G16480	no change	-0.5309129865257232	-0.7899319317591457	AT4G16480	--	GO:0005366,myo-inositol:proton symporter activity; GO:0005886,plasma membrane; GO:0015293,symporter activity; GO:0015798,myo-inositol transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_001328028.1 inositol transporter 4 [Arabidopsis thaliana]	256	180	95	71
AT4G16500	no change	-0.08228025872684984	-0.9419898943371148	AT4G16500	--	GO:0000325,plant-type vacuole; GO:0004869,cysteine-type endopeptidase inhibitor activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0010466,negative regulation of peptidase activity; GO:0010951,negative regulation of endopeptidase activity; GO:0030414,peptidase inhibitor activity; GO:0099503,secretory vesicle;	--	NP_001319960.1 Cystatin/monellin superfamily protein [Arabidopsis thaliana]	350	243	110	92
AT4G16510	no change	0.2397383031593407	0.8089876711737395	AT4G16510	--	GO:0002161,aminoacyl-tRNA editing activity; GO:0006399,tRNA metabolic process; GO:0106074,aminoacyl-tRNA metabolism involved in translational fidelity;	--	NP_567502.1 YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]	32	18	31	26
AT4G16563	no change	-0.11252585970913304	0.737878399124902	AT4G16563	--	GO:0003674,molecular_function; GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity;	--	NP_567506.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	116	70	104	97
AT4G16670	no change	0.05738482859734747	0.04523072613953077	AT4G16670	--	GO:0006892,post-Golgi vesicle-mediated transport;	--	NP_001328699.1 auxin canalization protein (DUF828) [Arabidopsis thaliana]	74	66	45	49
AT4G16680	no change	-0.16428041742371147	0.355171026624067	AT4G16680	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0016787,hydrolase activity;	DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]; K12813;	NP_193401.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	24	12	17	13
AT4G16695	no change	0.9926687632202672	-0.4943152339932109	AT4G16695	--	GO:0000138,Golgi trans cisterna; GO:0005794,Golgi apparatus; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001328627.1 transmembrane protein [Arabidopsis thaliana]	83	45	32	27
AT4G16990	no change	0.16533428648073947	-0.3878589746617921	AT4G16990	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003953,NAD+ nucleosidase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016787,hydrolase activity; GO:0043531,ADP binding; GO:0050135,NAD(P)+ nucleosidase activity; GO:0050832,defense response to fungus; GO:0061809,NAD+ nucleotidase, cyclic ADP-ribose generating; GO:2000071,regulation of defense response by callose deposition;	--	NP_001329874.1 disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]	42	38	20	20
AT4G17020	no change	0.3048029918886543	0.3656916630022345	AT4G17020	--	GO:0000439,transcription factor TFIIH core complex; GO:0001671,ATPase activator activity; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005675,transcription factor TFIIH holo complex; GO:0006281,DNA repair; GO:0006289,nucleotide-excision repair; GO:0006974,cellular response to DNA damage stimulus; GO:0070816,phosphorylation of RNA polymerase II C-terminal domain;	TFIIH4, GTF2H4, TFB2; transcription initiation factor TFIIH subunit 4; K03144;	NP_974564.1 transcription factor-like protein [Arabidopsis thaliana]	20	29	27	16
AT4G17090	no change	0.14851939947833864	0.10110341480246708	AT4G17090	--	GO:0000024,maltose biosynthetic process; GO:0000272,polysaccharide catabolic process; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0008152,metabolic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016161,beta-amylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102229,amylopectin maltohydrolase activity;	E3.2.1.2; beta-amylase [EC:3.2.1.2]; K01177;	NP_567523.1 chloroplast beta-amylase [Arabidopsis thaliana]	856	873	673	556
AT4G17100	no change	-0.43158250673823145	-0.5165431869146737	AT4G17100	--	GO:0004521,endoribonuclease activity; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	EEF2; elongation factor 2; K03234;	CAB46052.1 putative serine protease-like protein [Arabidopsis thaliana]	852	839	441	344
AT4G17280	no change	0.05514711727872826	-0.1966434433383368	AT4G17280	--	GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_193461.5 Auxin-responsive family protein [Arabidopsis thaliana]	69	69	45	35
AT4G17480	no change	-0.28494882751030115	-0.3311716773891659	AT4G17480	--	GO:0016787,hydrolase activity; GO:0016790,thiolester hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0098599,palmitoyl hydrolase activity; GO:0098734,macromolecule depalmitoylation;	PPT; palmitoyl-protein thioesterase [EC:3.1.2.22]; K01074;	NP_193478.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	85	38	39	25
AT4G17520	no change	0.5836148792489457	0.158918991099884	AT4G17520	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0048471,perinuclear region of cytoplasm;	--	NP_193485.1 Hyaluronan / mRNA binding family [Arabidopsis thaliana]	1056	977	809	688
AT4G17540	no change	0.1459612972234385	-0.9773859396614384	AT4G17540	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_193487.2 dynamin [Arabidopsis thaliana]	11	12	0	7
AT4G17550	no change	-0.09752513716559846	-0.537977980204766	AT4G17550	--	GO:0000325,plant-type vacuole; GO:0008643,carbohydrate transport; GO:0015760,glucose-6-phosphate transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055062,phosphate ion homeostasis; GO:0055085,transmembrane transport; GO:0061513,glucose 6-phosphate:inorganic phosphate antiporter activity;	--	NP_193488.2 Major facilitator superfamily protein [Arabidopsis thaliana]	133	106	69	41
AT4G17560	no change	-0.8192563938707988	-0.9189449320648292	AT4G17560	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L19, MRPL19, rplS; large subunit ribosomal protein L19; K02884;	NP_567531.1 Ribosomal protein L19 family protein [Arabidopsis thaliana]	167	154	49	61
AT4G17600	no change	0.09390810718337925	-0.8262917402670079	AT4G17600	--	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0009503,thylakoid light-harvesting complex; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019899,enzyme binding; GO:0042651,thylakoid membrane; GO:0042802,identical protein binding; GO:0043495,protein-membrane adaptor activity; GO:1902326,positive regulation of chlorophyll biosynthetic process; GO:1904964,positive regulation of phytol biosynthetic process; GO:1904966,positive regulation of vitamin E biosynthetic process;	--	NP_567532.1 Chlorophyll A-B binding family protein [Arabidopsis thaliana]	297	226	102	91
AT4G17730	no change	-0.30944699744752996	0.48912211243542414	AT4G17730	--	GO:0000149,SNARE binding; GO:0000325,plant-type vacuole; GO:0005484,SNAP receptor activity; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0006906,vesicle fusion; GO:0009597,detection of virus; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0019048,modulation by virus of host process; GO:0031201,SNARE complex; GO:0048278,vesicle docking; GO:0061025,membrane fusion; GO:0110165,cellular anatomical entity;	--	NP_567537.1 syntaxin of plants 23 [Arabidopsis thaliana]	114	99	77	114
AT4G17770	no change	0.17132038050000298	0.16998115666037222	AT4G17770	--	GO:0003824,catalytic activity; GO:0004805,trehalose-phosphatase activity; GO:0005991,trehalose metabolic process; GO:0005992,trehalose biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0070413,trehalose metabolism in response to stress;	TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]; K16055;	NP_001329809.1 trehalose phosphatase/synthase 5 [Arabidopsis thaliana]	212	171	158	126
AT4G17830	no change	-0.8558434697767447	-0.3218427433763144	AT4G17830	--	GO:0005829,cytosol; GO:0006526,arginine biosynthetic process; GO:0006592,ornithine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0008777,acetylornithine deacetylase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	argE; acetylornithine deacetylase [EC:3.5.1.16]; K01438;	NP_001190758.1 Peptidase M20/M25/M40 family protein [Arabidopsis thaliana]	187	222	146	77
AT4G17840	no change	0.7659427007025131	0.09006356575899475	AT4G17840	--	GO:0004175,endopeptidase activity; GO:0004222,metalloendopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016020,membrane; GO:0016485,protein processing; GO:0071586,CAAX-box protein processing; GO:0080120,CAAX-box protein maturation;	--	NP_567542.1 CAAX protease self-immunity protein [Arabidopsis thaliana]	86	78	46	66
AT4G17950	no change	0.07323968858479635	0.6591088368041033	AT4G17950	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0005634,nucleus;	--	NP_567546.1 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	196	156	213	155
AT4G18060	no change	-0.13570347875216987	-0.40629775624973014	AT4G18060	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle;	--	NP_193540.3 SH3 domain-containing protein [Arabidopsis thaliana]	175	108	80	60
AT4G18130	no change	-0.2266093764266535	-0.6191417646068292	AT4G18130	--	GO:0000155,phosphorelay sensor kinase activity; GO:0000160,phosphorelay signal transduction system; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007165,signal transduction; GO:0009584,detection of visible light; GO:0009585,red, far-red light phototransduction; GO:0009881,photoreceptor activity; GO:0017006,protein-tetrapyrrole linkage; GO:0042803,protein homodimerization activity; GO:0043231,intracellular membrane-bounded organelle; GO:0050896,response to stimulus;	PHYE; phytochrome E; K12123;	NP_193547.4 phytochrome E [Arabidopsis thaliana]	116	111	66	34
AT4G18230	no change	0.2845843007316458	0.961371363485666	AT4G18230	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0006488,dolichol-linked oligosaccharide biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0031965,nuclear membrane; GO:0043541,UDP-N-acetylglucosamine transferase complex;	ALG14; beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]; K07441;	NP_001328332.1 UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Arabidopsis thaliana]	150	161	206	193
AT4G18372	no change	-0.40290188732566135	-0.2019993436971975	AT4G18372	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process; GO:0031417,NatC complex; GO:1990904,ribonucleoprotein complex;	--	NP_001328000.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	15	14	11	6
AT4G18470	no change	0.07183449968253423	0.18610348264986817	AT4G18470	--	GO:0000976,transcription cis-regulatory region binding; GO:0002215,defense response to nematode; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006952,defense response; GO:0006974,cellular response to DNA damage stimulus; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0010113,negative regulation of systemic acquired resistance; GO:0016444,somatic cell DNA recombination; GO:0016570,histone modification; GO:0030915,Smc5-Smc6 complex; GO:0031348,negative regulation of defense response; GO:0043966,histone H3 acetylation; GO:0045892,negative regulation of DNA-templated transcription; GO:0051572,negative regulation of histone H3-K4 methylation;	--	NP_567557.1 negative regulator of systemic acquired resistance (SNI1) [Arabidopsis thaliana]	9	14	12	6
AT4G18465	no change	-0.44142272169194385	0.33007225158391973	AT4G18465	--	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005681,spliceosomal complex; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_567558.2 RNA helicase family protein [Arabidopsis thaliana]	54	41	46	33
AT4G18480	no change	-0.06751190358975614	-0.31500457674402893	AT4G18480	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010007,magnesium chelatase complex; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016851,magnesium chelatase activity; GO:0016874,ligase activity; GO:0016887,ATP hydrolysis activity;	chlI, bchI; magnesium chelatase subunit I [EC:6.6.1.1]; K03405;	NP_193583.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	777	717	427	365
AT4G18596	no change	-0.400090029633451	-0.5962947331530407	AT4G18596	--	GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_567562.2 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	173	246	98	87
AT4G18670	no change	-0.3573503809602641	-0.14624364759779016	AT4G18670	--	GO:0005199,structural constituent of cell wall; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0071555,cell wall organization;	--	NP_193602.4 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	444	353	283	195
AT4G18830	no change	0.15424404011189646	0.6653412082240027	AT4G18830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009553,embryo sac development; GO:0030863,cortical cytoskeleton; GO:0043622,cortical microtubule organization; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_193618.2 ovate family protein 5 [Arabidopsis thaliana]	7	17	25	3
AT4G18840	no change	-0.6814435083236263	-0.6651724856232674	AT4G18840	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_001319988.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	18	18	8	7
AT4G19150	no change	0.06442664149398665	-0.06704345778142856	AT4G19150	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_193650.2 Ankyrin repeat family protein [Arabidopsis thaliana]	55	46	32	31
AT4G19170	no change	0.11197428774900378	0.10593909664149052	AT4G19170	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010287,plastoglobule; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:1901811,beta-carotene catabolic process;	NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840;	NP_193652.1 nine-cis-epoxycarotenoid dioxygenase 4 [Arabidopsis thaliana]	411	296	249	245
AT4G19530	no change	-0.17802982100635176	-0.2295255589533088	AT4G19530	--	GO:0000166,nucleotide binding; GO:0002758,innate immune response-activating signal transduction; GO:0003953,NAD+ nucleosidase activity; GO:0005524,ATP binding; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016787,hydrolase activity; GO:0043531,ADP binding; GO:0050135,NAD(P)+ nucleosidase activity; GO:0061809,NAD+ nucleotidase, cyclic ADP-ribose generating;	--	NP_001328514.1 disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	50	42	30	22
AT4G19540	no change	0.33499725160892907	-0.1722433082955366	AT4G19540	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0016226,iron-sulfur cluster assembly; GO:0032543,mitochondrial translation; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0140663,ATP-dependent FeS chaperone activity;	--	NP_193689.1 INDH1(iron-sulfur protein required for NADH dehydrogenase) [Arabidopsis thaliana]	46	39	18	30
AT4G19840	no change	-0.2988345175249392	-0.610449695629017	AT4G19840	--	GO:0009625,response to insect; GO:0030246,carbohydrate binding; GO:0043394,proteoglycan binding;	--	NP_193719.1 phloem protein 2-A1 [Arabidopsis thaliana]	177	204	85	80
AT4G20040	no change	0.07661138423235311	-0.01053591758216132	AT4G20040	--	GO:0004650,polygalacturonase activity; GO:0016829,lyase activity;	--	NP_567595.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	29	15	19	10
AT4G20150	no change	-0.5108442286597129	0.24677926512230425	AT4G20150	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0005829,cytosol;	--	NP_567596.1 excitatory amino acid transporter [Arabidopsis thaliana]	800	434	577	385
AT4G20260	no change	0.0617153345998543	-0.3036940970463035	AT4G20260	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005547,phosphatidylinositol-3,4,5-trisphosphate binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005881,cytoplasmic microtubule; GO:0005886,plasma membrane; GO:0006499,N-terminal protein myristoylation; GO:0008017,microtubule binding; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0010350,cellular response to magnesium starvation; GO:0016020,membrane; GO:0031115,negative regulation of microtubule polymerization; GO:0031117,positive regulation of microtubule depolymerization; GO:0035865,cellular response to potassium ion; GO:0043325,phosphatidylinositol-3,4-bisphosphate binding; GO:0043622,cortical microtubule organization; GO:0043657,host cell; GO:0046658,anchored component of plasma membrane; GO:0051511,negative regulation of unidimensional cell growth; GO:0051592,response to calcium ion; GO:0070161,anchoring junction; GO:0071219,cellular response to molecule of bacterial origin; GO:0071280,cellular response to copper ion; GO:0071281,cellular response to iron ion; GO:0071286,cellular response to magnesium ion; GO:0071325,cellular response to mannitol stimulus; GO:0071472,cellular response to salt stress; GO:0072709,cellular response to sorbitol; GO:0075733,intracellular transport of virus; GO:0080025,phosphatidylinositol-3,5-bisphosphate binding; GO:0090332,stomatal closure;	--	NP_001031676.1 plasma-membrane associated cation-binding protein 1 [Arabidopsis thaliana]	2439	2309	1466	1092
AT4G20300	no change	0.12699134463133938	0.4202164503773934	AT4G20300	--	GO:0005515,protein binding;	--	NP_567597.2 Serine/Threonine-kinase, putative (DUF1639) [Arabidopsis thaliana]	162	136	130	130
AT4G20360	no change	-0.3124354848209004	-0.01352840466128706	AT4G20360	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0042644,chloroplast nucleoid; GO:0048046,apoplast; GO:0048366,leaf development; GO:0070125,mitochondrial translational elongation;	tuf, TUFM; elongation factor Tu; K02358;	NP_001329775.1 RAB GTPase homolog E1B [Arabidopsis thaliana]	6167	6520	4893	3518
AT4G20760	no change	-0.20086994598248775	-0.237357874018792	AT4G20760	--	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009507,chloroplast;	--	NP_001329369.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	56	88	34	46
AT4G20850	no change	-0.2577731777410722	0.18916869703894187	AT4G20850	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004177,aminopeptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0008240,tripeptidyl-peptidase activity; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0022626,cytosolic ribosome; GO:1901149,salicylic acid binding;	--	NP_193817.2 tripeptidyl peptidase ii [Arabidopsis thaliana]	1238	1090	956	794
AT4G21065	no change	0.9706325021097204	-0.6905549469869162	AT4G21065	--	GO:0005515,protein binding; GO:0008150,biological_process; GO:0008270,zinc ion binding;	--	NP_001078414.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	9	11	3	5
AT4G21180	no change	0.7201831440637343	-0.1435665733828906	AT4G21180	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0008320,protein transmembrane transporter activity; GO:0015031,protein transport; GO:0016020,membrane; GO:0031207,Sec62/Sec63 complex; GO:0071806,protein transmembrane transport;	SEC63, DNAJC23; translocation protein SEC63; K09540;	NP_567621.1 DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]	332	216	182	143
AT4G21520	no change	-0.8485798806171014	0.10970953351614904	AT4G21520	--	GO:0005515,protein binding;	--	NP_001328473.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	39	19	14	25
AT4G21660	no change	0.445266104966268	0.1366333256937969	AT4G21660	--	GO:0000398,mRNA splicing, via spliceosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005684,U2-type spliceosomal complex; GO:0005686,U2 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0016020,membrane; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3B2, SAP145, CUS1; splicing factor 3B subunit 2; K12829;	NP_193897.2 proline-rich spliceosome-associated (PSP) family protein [Arabidopsis thaliana]	309	214	230	151
AT4G21740	no change	0.8157855531840676	-0.5671241159115509	AT4G21740	--	GO:0016020,membrane;	--	NP_193905.1 transmembrane protein [Arabidopsis thaliana]	60	27	21	17
AT4G21800	no change	-0.5858660367966064	0.512881176929151	AT4G21800	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0009524,phragmoplast; GO:0009793,embryo development ending in seed dormancy; GO:0016787,hydrolase activity; GO:0051301,cell division;	--	NP_193911.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	96	85	86	83
AT4G21960	no change	-0.6795074907761136	-0.06743247274518764	AT4G21960	--	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0006979,response to oxidative stress; GO:0009505,plant-type cell wall; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0048511,rhythmic process; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity;	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430;	NP_567641.1 Peroxidase superfamily protein [Arabidopsis thaliana]	2144	1885	1484	1071
AT4G21980	no change	-0.12055107463446033	0.10512941990701472	AT4G21980	--	GO:0000421,autophagosome membrane; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005776,autophagosome; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0006914,autophagy; GO:0006995,cellular response to nitrogen starvation; GO:0015031,protein transport; GO:0016020,membrane; GO:0019776,Atg8 ligase activity; GO:0019779,Atg8 activating enzyme activity; GO:0019786,Atg8-specific peptidase activity; GO:0031410,cytoplasmic vesicle; GO:0050832,defense response to fungus; GO:0061908,phagophore;	GABARAP, ATG8, LC3; GABA(A) receptor-associated protein; K08341;	NP_567642.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]	244	315	248	159
AT4G22310	no change	0.6266843404513975	0.09997518290491128	AT4G22310	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0006850,mitochondrial pyruvate transmembrane transport; GO:0016020,membrane;	--	NP_193962.1 Uncharacterized protein family (UPF0041) [Arabidopsis thaliana]	58	36	53	16
AT4G23470	no change	-0.0175809759255206	0.29737378100849693	AT4G23470	--	GO:0016020,membrane;	--	BAD44288.1 unnamed protein product [Arabidopsis thaliana]	74	85	82	50
AT4G23540	no change	0.2786894783425096	0.4459622765615191	AT4G23540	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing;	--	NP_194085.4 ARM repeat superfamily protein [Arabidopsis thaliana]	149	148	137	129
AT4G23670	no change	-0.6228558480260245	-0.34363295907324415	AT4G23670	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0006952,defense response; GO:0046686,response to cadmium ion;	--	NP_194098.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	1074	1119	726	440
AT4G23810	no change	-0.21590568280053132	-0.0160944237310055	AT4G23810	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009617,response to bacterium; GO:0009751,response to salicylic acid; GO:0010150,leaf senescence; GO:0010193,response to ozone; GO:0031347,regulation of defense response; GO:0042542,response to hydrogen peroxide; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:2000022,regulation of jasmonic acid mediated signaling pathway;	--	NP_194112.1 WRKY family transcription factor [Arabidopsis thaliana]	32	30	14	25
AT4G23885	no change	-0.10420437638015297	0.3626223922381057	AT4G23885	--	GO:0005739,mitochondrion;	--	NP_567689.1 hypothetical protein AT4G23885 [Arabidopsis thaliana]	26	18	20	17
AT4G23890	no change	0.890933814818547	-0.0553001205413261	AT4G23890	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009767,photosynthetic electron transport chain; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0048038,quinone binding;	ndhS; NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [EC:1.6.5.-]; K00345;	NP_194120.1 NAD(P)H-quinone oxidoreductase subunit S [Arabidopsis thaliana]	127	78	72	57
AT4G24010	no change	-0.22498705624202053	-0.23017814457997304	AT4G24010	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009833,plant-type primary cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016760,cellulose synthase (UDP-forming) activity; GO:0030244,cellulose biosynthetic process; GO:0051753,mannan synthase activity; GO:0071555,cell wall organization; GO:0097502,mannosylation;	--	NP_194132.3 cellulose synthase like G1 [Arabidopsis thaliana]	41	34	28	15
AT4G24190	no change	0.9100092389657592	-0.352149197392927	AT4G24190	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009306,protein secretion; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0009934,regulation of meristem structural organization; GO:0010075,regulation of meristem growth; GO:0016887,ATP hydrolysis activity; GO:0034976,response to endoplasmic reticulum stress; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone;	HSP90B, TRA1; heat shock protein 90kDa beta; K09487;	NP_194150.1 Chaperone protein htpG family protein [Arabidopsis thaliana]	3414	3579	2055	1593
AT4G24210	no change	0.387004642072857	0.01554878986684123	AT4G24210	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009845,seed germination; GO:0010162,seed dormancy process; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	GID2, SLY1; F-box protein GID2; K14495;	NP_194152.1 F-box family protein [Arabidopsis thaliana]	137	91	84	67
AT4G24220	no change	0.7531782323008784	-0.02699088944591294	AT4G24220	--	GO:0005829,cytosol; GO:0008202,steroid metabolic process; GO:0009611,response to wounding; GO:0010051,xylem and phloem pattern formation; GO:0016491,oxidoreductase activity; GO:0035671,enone reductase activity; GO:0046983,protein dimerization activity; GO:0047787,delta4-3-oxosteroid 5beta-reductase activity;	VEP1; Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3]; K22419;	NP_194153.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	416	306	240	222
AT4G24230	no change	0.5099489472134864	-0.46344411297363264	AT4G24230	--	GO:0000062,fatty-acyl-CoA binding; GO:0001666,response to hypoxia; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006631,fatty acid metabolic process; GO:0006952,defense response; GO:0008289,lipid binding; GO:0009617,response to bacterium; GO:0009646,response to absence of light; GO:0015908,fatty acid transport; GO:0042742,defense response to bacterium; GO:0050832,defense response to fungus; GO:0071456,cellular response to hypoxia;	--	NP_849432.1 acyl-CoA-binding domain 3 [Arabidopsis thaliana]	160	171	107	56
AT4G24390	no change	0.701081407690373	0.1869058866183631	AT4G24390	--	GO:0000822,inositol hexakisphosphate binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009734,auxin-activated signaling pathway; GO:0010011,auxin binding; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_567702.2 RNI-like superfamily protein [Arabidopsis thaliana]	26	26	31	10
AT4G24520	no change	-0.702970508900174	0.05295840943980422	AT4G24520	--	GO:0003958,NADPH-hemoprotein reductase activity; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009698,phenylpropanoid metabolic process; GO:0010181,FMN binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0050661,NADP binding;	POR; NADPH-ferrihemoprotein reductase [EC:1.6.2.4]; K00327;	NP_001190823.1 P450 reductase 1 [Arabidopsis thaliana]	412	420	379	206
AT4G24770	no change	-0.3128066353383255	-0.32087574715165323	AT4G24770	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008266,poly(U) RNA binding; GO:0009409,response to cold; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009631,cold acclimation; GO:0009941,chloroplast envelope; GO:0016553,base conversion or substitution editing; GO:0043489,RNA stabilization; GO:0045087,innate immune response; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_001328008.1 31-kDa RNA binding protein [Arabidopsis thaliana]	2679	2833	1488	1416
AT4G24805	no change	-0.0985474024339804	-0.17286464716659794	AT4G24805	--	GO:0003674,molecular_function; GO:0005797,Golgi medial cisterna; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_680738.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	113	111	80	53
AT4G25170	no change	-0.05545486412589538	-0.21800912243036624	AT4G25170	--	GO:0003674,molecular_function;	--	NP_567716.1 Uncharacterized conserved protein (UCP012943) [Arabidopsis thaliana]	158	97	89	56
AT4G25180	no change	-0.396831394533089	0.010612922861703	AT4G25180	--	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006383,transcription by RNA polymerase III;	RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4; K03026;	NP_194248.2 RNA polymerase III RPC4 [Arabidopsis thaliana]	15	18	6	15
AT4G25270	no change	-0.4549999464917774	-0.8845350801872975	AT4G25270	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_194257.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	26	28	14	6
AT4G25660	no change	0.16950826145626072	0.8732227348318063	AT4G25660	--	GO:0008233,peptidase activity; GO:0016579,protein deubiquitination; GO:0070646,protein modification by small protein removal; GO:0101005,deubiquitinase activity;	--	NP_194296.1 PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]	80	86	117	86
AT4G25835	no change	0.3980841623066803	-0.5965741499451658	AT4G25835	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0006950,response to stress; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_567730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	61	62	30	24
AT4G26130	no change	-0.16181588935954497	-0.3323441614613402	AT4G26130	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_194343.1 cotton fiber protein [Arabidopsis thaliana]	274	283	175	121
AT4G26140	no change	-0.6533190512116509	-0.1479670366543335	AT4G26140	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast;	--	NP_001329560.1 beta-galactosidase 12 [Arabidopsis thaliana]	74	59	49	31
AT4G26490	no change	-0.3279106963389398	-0.5603004336914176	AT4G26490	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_194379.3 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	8	13	2	7
AT4G26510	no change	0.26003526406558164	-0.21309026115469365	AT4G26510	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004845,uracil phosphoribosyltransferase activity; GO:0004849,uridine kinase activity; GO:0005524,ATP binding; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0008152,metabolic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0044206,UMP salvage; GO:0044211,CTP salvage; GO:1901564,organonitrogen compound metabolic process;	udk, UCK; uridine kinase [EC:2.7.1.48]; K00876;	NP_001320072.1 uridine kinase-like 4 [Arabidopsis thaliana]	191	170	126	82
AT4G26530	no change	-0.3641908991022521	-0.6082898946333685	AT4G26530	--	GO:0003729,mRNA binding; GO:0004332,fructose-bisphosphate aldolase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0016829,lyase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process;	ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]; K01623;	NP_001031721.1 Aldolase superfamily protein [Arabidopsis thaliana]	300	329	171	107
AT4G26540	no change	-0.5034497346502133	0.8846652850894419	AT4G26540	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010074,maintenance of meristem identity; GO:0010078,maintenance of root meristem identity; GO:0010082,regulation of root meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042277,peptide binding; GO:0106310,protein serine kinase activity; GO:2000280,regulation of root development;	--	NP_567748.5 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	36	32	41	41
AT4G26590	no change	-0.8017344470950968	0.1964664766534098	AT4G26590	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_194389.1 oligopeptide transporter 5 [Arabidopsis thaliana]	24	45	17	34
AT4G26620	no change	0.3974726995118731	0.27412433612036236	AT4G26620	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_567751.1 Sucrase/ferredoxin-like family protein [Arabidopsis thaliana]	82	89	79	59
AT4G26630	no change	-0.3986664172284601	-0.22342577153682455	AT4G26630	--	GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0009651,response to salt stress; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:2000779,regulation of double-strand break repair;	--	NP_001031724.1 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]	945	764	559	410
AT4G26670	no change	0.9094667441607536	-0.05930553079527601	AT4G26670	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008320,protein transmembrane transporter activity; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0042721,TIM22 mitochondrial import inner membrane insertion complex; GO:0042803,protein homodimerization activity; GO:0045036,protein targeting to chloroplast; GO:0045039,protein insertion into mitochondrial inner membrane; GO:0071806,protein transmembrane transport;	--	NP_567754.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana]	162	134	113	76
AT4G26680	no change	-0.07967715652139833	0.3653603763380289	AT4G26680	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_001190849.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	10	9	8	8
AT4G26690	no change	-0.5844299366955836	0.3874655492224085	AT4G26690	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity; GO:0008889,glycerophosphodiester phosphodiesterase activity; GO:0009932,cell tip growth; GO:0010053,root epidermal cell differentiation; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0048765,root hair cell differentiation; GO:0071555,cell wall organization;	--	CAB36515.1 putative protein [Arabidopsis thaliana]	622	534	479	504
AT4G26900	no change	0.3511743630559837	0.12758730757291148	AT4G26900	--	GO:0000105,histidine biosynthetic process; GO:0000107,imidazoleglycerol-phosphate synthase activity; GO:0003824,catalytic activity; GO:0004359,glutaminase activity; GO:0006541,glutamine metabolic process; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016763,pentosyltransferase activity; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0016833,oxo-acid-lyase activity; GO:0044249,cellular biosynthetic process; GO:1901576,organic substance biosynthetic process;	HIS7; imidazole glycerol-phosphate synthase [EC:4.3.2.10]; K01663;	NP_194420.1 HIS HF [Arabidopsis thaliana]	254	154	187	109
AT4G26970	no change	0.6495851082990491	-0.21442683637028143	AT4G26970	--	GO:0003994,aconitate hydratase activity; GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006097,glyoxylate cycle; GO:0006099,tricarboxylic acid cycle; GO:0006101,citrate metabolic process; GO:0006102,isocitrate metabolic process; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0030350,iron-responsive element binding; GO:0043436,oxoacid metabolic process; GO:0046872,metal ion binding; GO:0047780,citrate dehydratase activity; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:1990641,response to iron ion starvation;	ACO, acnA; aconitate hydratase [EC:4.2.1.3]; K01681;	NP_567763.2 aconitase 2 [Arabidopsis thaliana]	892	875	526	477
AT4G26980	no change	0.37348012749847503	-0.04634370690122921	AT4G26980	--	GO:0003674,molecular_function; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_194428.2 RNI-like superfamily protein [Arabidopsis thaliana]	39	49	32	25
AT4G27030	no change	0.16822450072688333	0.8524608644436757	AT4G27030	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006636,unsaturated fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0031969,chloroplast membrane; GO:0046471,phosphatidylglycerol metabolic process; GO:0052637,delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity; GO:0102654,1-18:1-2-16:0-phosphatidylglycerol trans-3 desaturase activity; GO:0102851,1-18:2-2-16:0-phosphatidylglycerol desaturase activity;	FAD4; palmitoyl-[glycerolipid] 3-(E)-desaturase [EC:1.14.19.43]; K20417;	NP_194433.1 fatty acid desaturase A [Arabidopsis thaliana]	17	23	20	27
AT4G27040	no change	-0.10179938720957386	0.20254748285019977	AT4G27040	--	GO:0000814,ESCRT II complex; GO:0005768,endosome; GO:0015031,protein transport; GO:0043328,protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; GO:0071985,multivesicular body sorting pathway;	SNF8, EAP30; ESCRT-II complex subunit VPS22; K12188;	NP_001119065.1 EAP30/Vps36 family protein [Arabidopsis thaliana]	68	55	61	34
AT4G27090	no change	0.9927156095117834	0.6795533527007935	AT4G27090	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042273,ribosomal large subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L14e, RPL14; large subunit ribosomal protein L14e; K02875;	NP_194439.1 Ribosomal protein L14 [Arabidopsis thaliana]	1636	1580	1962	1465
AT4G27240	no change	-0.66376113787411	0.14688455711759796	AT4G27240	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_567769.1 zinc finger (C2H2 type) family protein [Arabidopsis thaliana]	29	19	15	19
AT4G27690	no change	0.3193526665738766	0.1511691343501846	AT4G27690	--	GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0030904,retromer complex; GO:0042147,retrograde transport, endosome to Golgi;	VPS26; vacuolar protein sorting-associated protein 26; K18466;	NP_194499.2 vacuolar protein sorting 26B [Arabidopsis thaliana]	86	71	64	51
AT4G28040	no change	-0.34158500815631415	0.08693229642941896	AT4G28040	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_001031735.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	16	16	15	8
AT4G28050	no change	-0.10984821527418288	-0.1686861106622026	AT4G28050	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_194534.1 tetraspanin7 [Arabidopsis thaliana]	462	415	329	195
AT4G28070	no change	-0.22057154677546403	-0.4705996380732131	AT4G28070	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity;	--	NP_194536.2 AFG1-like ATPase family protein [Arabidopsis thaliana]	21	28	15	9
AT4G28180	no change	-0.4122008289325362	-0.3775240939023217	AT4G28180	--	--	--	NP_194547.1 hypothetical protein AT4G28180 [Arabidopsis thaliana]	19	14	11	6
AT4G28650	no change	-0.5269419426876933	0.09937050213755556	AT4G28650	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0046777,protein autophosphorylation; GO:0090406,pollen tube; GO:0106310,protein serine kinase activity;	--	NP_194594.1 Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	12	15	9	10
AT4G28760	no change	0.19290179488996312	0.1424369774379156	AT4G28760	--	GO:0003674,molecular_function;	--	NP_567819.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]	137	126	117	77
AT4G28770	no change	-0.03325006393653568	-0.2626428232253403	AT4G28770	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_001190864.1 Tetraspanin family protein [Arabidopsis thaliana]	106	113	60	60
AT4G29060	no change	-0.7724309142535327	-0.548776796006121	AT4G29060	--	GO:0003676,nucleic acid binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0043253,chloroplast ribosome; GO:0061770,translation elongation factor binding; GO:0110165,cellular anatomical entity; GO:1905538,polysome binding;	--	NP_567820.1 elongation factor Ts family protein [Arabidopsis thaliana]	1656	1533	823	624
AT4G29140	no change	0.9999213817223188	-0.23675971956613065	AT4G29140	--	GO:0005768,endosome; GO:0005770,late endosome; GO:0006952,defense response; GO:0010008,endosome membrane; GO:0010015,root morphogenesis; GO:0010252,auxin homeostasis; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0031348,negative regulation of defense response; GO:0031902,late endosome membrane; GO:0042910,xenobiotic transmembrane transporter activity; GO:0046620,regulation of organ growth; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_194643.1 MATE efflux family protein [Arabidopsis thaliana]	78	37	39	25
AT4G29210	no change	0.2589830400594961	0.1382109902375433	AT4G29210	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0006749,glutathione metabolic process; GO:0006751,glutathione catabolic process; GO:0006805,xenobiotic metabolic process; GO:0009636,response to toxic substance; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016756,glutathione gamma-glutamylcysteinyltransferase activity; GO:0016787,hydrolase activity; GO:0036374,glutathione hydrolase activity; GO:0102953,hypoglycin A gamma-glutamyl transpeptidase activity; GO:0103068,leukotriene C4 gamma-glutamyl transferase activity;	GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase [EC:2.3.2.2 3.4.19.13 3.4.19.14]; K18592;	NP_974636.1 gamma-glutamyl transpeptidase 4 [Arabidopsis thaliana]	178	166	136	114
AT4G29220	no change	0.13622389537532417	0.1370581886631146	AT4G29220	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0003872,6-phosphofructokinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006002,fructose 6-phosphate metabolic process; GO:0006096,glycolytic process; GO:0008152,metabolic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061615,glycolytic process through fructose-6-phosphate;	pfkA, PFK; 6-phosphofructokinase 1 [EC:2.7.1.11]; K00850;	OAO97680.1 PFK1 [Arabidopsis thaliana]	100	108	84	68
AT4G29250	no change	-0.19570463515210149	-0.4363885383273646	AT4G29250	--	GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups;	--	NP_567826.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	123	100	68	42
AT4G29360	no change	0.6741731631080028	0.08002899949735309	AT4G29360	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_849556.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	150	128	139	61
AT4G29510	no change	-0.07294615133085107	0.6118673736953923	AT4G29510	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008168,methyltransferase activity; GO:0016274,protein-arginine N-methyltransferase activity; GO:0016740,transferase activity; GO:0018216,peptidyl-arginine methylation; GO:0032259,methylation; GO:0035242,protein-arginine omega-N asymmetric methyltransferase activity;	PRMT1; type I protein arginine methyltransferase [EC:2.1.1.319]; K11434;	NP_194680.1 arginine methyltransferase 11 [Arabidopsis thaliana]	213	197	268	154
AT4G29780	no change	-0.1733705837279035	-0.17459897315318346	AT4G29780	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_567834.2 nuclease [Arabidopsis thaliana]	69	51	34	35
AT4G29830	no change	-0.21725720158926584	0.30783879708688333	AT4G29830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009908,flower development; GO:0009910,negative regulation of flower development; GO:0010452,histone H3-K36 methylation; GO:0016441,post-transcriptional gene silencing; GO:0016593,Cdc73/Paf1 complex; GO:0051568,histone H3-K4 methylation; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:1904278,positive regulation of wax biosynthetic process;	WDR61, REC14, SKI8; WD repeat-containing protein 61; K12602;	NP_194712.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	161	168	132	135
AT4G29840	no change	0.7951586184754396	-0.199923035665329	AT4G29840	--	GO:0003824,catalytic activity; GO:0004795,threonine synthase activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006520,cellular amino acid metabolic process; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009088,threonine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0019344,cysteine biosynthetic process; GO:0030170,pyridoxal phosphate binding;	thrC; threonine synthase [EC:4.2.3.1]; K01733;	NP_194713.1 Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]	1065	967	660	512
AT4G29900	no change	-0.2969508071290153	0.3858483476008984	AT4G29900	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_001327988.1 autoinhibited Ca(2+)-ATPase 10 [Arabidopsis thaliana]	384	344	276	338
AT4G30130	no change	-0.831387414040552	-0.15855952036631252	AT4G30130	--	GO:0008150,biological_process;	--	NP_001329518.1 DUF630 family protein (DUF630 and DUF632) [Arabidopsis thaliana]	110	94	58	61
AT4G30440	no change	0.2371675390531639	-0.03192264222355635	AT4G30440	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0032580,Golgi cisterna membrane; GO:0033481,galacturonate biosynthetic process; GO:0050378,UDP-glucuronate 4-epimerase activity; GO:0050829,defense response to Gram-negative bacterium; GO:0050832,defense response to fungus; GO:0071456,cellular response to hypoxia;	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]; K08679;	NP_194773.1 UDP-D-glucuronate 4-epimerase 1 [Arabidopsis thaliana]	843	766	589	454
AT4G30610	no change	0.05455083974032666	0.2086913268419341	AT4G30610	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016787,hydrolase activity;	--	NP_194790.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	145	150	108	115
AT4G30790	no change	0.30575313900011747	0.4069486638720978	AT4G30790	--	GO:0000045,autophagosome assembly; GO:0000422,autophagy of mitochondrion; GO:0001934,positive regulation of protein phosphorylation; GO:0005515,protein binding; GO:0005776,autophagosome; GO:0006914,autophagy; GO:0006996,organelle organization; GO:0009506,plasmodesma; GO:0010150,leaf senescence; GO:0015031,protein transport; GO:0019898,extrinsic component of membrane; GO:0019901,protein kinase binding; GO:0030242,autophagy of peroxisome; GO:0031410,cytoplasmic vesicle; GO:0034045,phagophore assembly site membrane; GO:0034727,piecemeal microautophagy of the nucleus; GO:0042803,protein homodimerization activity; GO:0060090,molecular adaptor activity; GO:0061709,reticulophagy; GO:1990316,Atg1/ULK1 kinase complex;	ATG11; autophagy-related protein 11; K08330;	NP_194808.1 autophagy-like protein [Arabidopsis thaliana]	141	131	129	109
AT4G31150	no change	0.3476127183246874	-0.01396830208274224	AT4G31150	--	GO:0003727,single-stranded RNA binding; GO:0004519,endonuclease activity; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0016891,endoribonuclease activity, producing 5'-phosphomonoesters; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	--	NP_001329217.1 endonuclease V family protein [Arabidopsis thaliana]	25	20	9	19
AT4G31230	no change	0.8135676458248914	-0.3349788165869143	AT4G31230	--	GO:0003729,mRNA binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0010053,root epidermal cell differentiation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016787,hydrolase activity;	--	NP_194851.2 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana]	14	9	7	5
AT4G31400	no change	-0.8290146690248505	0.05009026877758171	AT4G31400	--	GO:0000070,mitotic sister chromatid segregation; GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0007049,cell cycle; GO:0007062,sister chromatid cohesion; GO:0007064,mitotic sister chromatid cohesion; GO:0009553,embryo sac development; GO:0009793,embryo development ending in seed dormancy; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0034089,establishment of meiotic sister chromatid cohesion; GO:0045132,meiotic chromosome segregation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0048609,multicellular organismal reproductive process; GO:0048653,anther development; GO:0051177,meiotic sister chromatid cohesion; GO:0051301,cell division; GO:0051321,meiotic cell cycle; GO:0060772,leaf phyllotactic patterning; GO:0061733,peptide-lysine-N-acetyltransferase activity; GO:0080186,developmental vegetative growth;	--	NP_194868.2 protein CTF7 [Arabidopsis thaliana]	5	15	7	7
AT4G31530	no change	0.289481840150364	-0.8051502552014699	AT4G31530	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0035451,extrinsic component of stromal side of plastid thylakoid membrane;	--	NP_194881.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	47	93	34	21
AT4G31810	no change	0.1216134795216615	0.6453593858973465	AT4G31810	--	GO:0003860,3-hydroxyisobutyryl-CoA hydrolase activity; GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0016787,hydrolase activity;	HIBCH; 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4]; K05605;	NP_194909.2 ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]	85	78	85	82
AT4G31850	no change	-0.6641954266968259	-0.6319451650594802	AT4G31850	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0032544,plastid translation; GO:0043489,RNA stabilization;	--	NP_194913.1 proton gradient regulation 3 [Arabidopsis thaliana]	155	168	90	51
AT4G32180	no change	0.7648091951410099	-0.01825788328827279	AT4G32180	--	GO:0000166,nucleotide binding; GO:0004594,pantothenate kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0015937,coenzyme A biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	PANK4; bifunctional protein PANK4; K24265;	NP_194945.3 pantothenate kinase 2 [Arabidopsis thaliana]	359	325	234	210
AT4G32290	no change	0.47612797768606174	-0.487739701475382	AT4G32290	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_194956.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	101	62	48	29
AT4G32340	no change	0.0050845432898222	0.2794208547929907	AT4G32340	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_194960.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	126	130	113	93
AT4G32460	no change	0.04029550456902457	-0.08701269805061125	AT4G32460	--	GO:0009793,embryo development ending in seed dormancy; GO:0045489,pectin biosynthetic process;	--	NP_567894.1 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]	1827	1715	1306	918
AT4G32560	no change	-0.7196779452902256	-0.3648444025755001	AT4G32560	--	GO:0006893,Golgi to plasma membrane transport;	--	NP_001031771.1 paramyosin-like protein [Arabidopsis thaliana]	104	83	55	41
AT4G32570	no change	0.6859120663059787	-0.23331417377820984	AT4G32570	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009611,response to wounding; GO:0031347,regulation of defense response; GO:2000022,regulation of jasmonic acid mediated signaling pathway;	--	NP_567898.1 TIFY domain protein 8 [Arabidopsis thaliana]	40	32	26	15
AT4G32670	no change	0.439607397442268	-0.06781630788556635	AT4G32670	--	GO:0005789,endoplasmic reticulum membrane; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway;	MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]; K10661;	NP_001320116.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	44	54	27	34
AT4G32710	no change	-0.5007902304191902	-0.2395388746095624	AT4G32710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_001320117.1 Protein kinase superfamily protein [Arabidopsis thaliana]	141	121	84	63
AT4G32730	no change	-0.3428995498894798	0.3700844813458555	AT4G32730	MYB	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0008285,negative regulation of cell population proliferation; GO:0032465,regulation of cytokinesis; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0070176,DRM complex; GO:1901181,negative regulation of cellular response to caffeine;	--	NP_001328944.1 Homeodomain-like protein [Arabidopsis thaliana]	49	43	46	33
AT4G32940	no change	-0.02032703984253394	0.22195383640774463	AT4G32940	--	GO:0000323,lytic vacuole; GO:0000326,protein storage vacuole; GO:0004175,endopeptidase activity; GO:0004197,cysteine-type endopeptidase activity; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0006624,vacuolar protein processing; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009611,response to wounding; GO:0009723,response to ethylene; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0110165,cellular anatomical entity;	LGMN; legumain [EC:3.4.22.34]; K01369;	NP_195020.1 gamma vacuolar processing enzyme [Arabidopsis thaliana]	1999	2219	1962	1344
AT4G33010	no change	-0.3419408946224558	-0.7660656575780632	AT4G33010	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004375,glycine dehydrogenase (decarboxylating) activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0005960,glycine cleavage complex; GO:0006544,glycine metabolic process; GO:0006546,glycine catabolic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016594,glycine binding; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0030170,pyridoxal phosphate binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast;	GLDC, gcvP; glycine dehydrogenase [EC:1.4.4.2]; K00281;	NP_195027.1 glycine decarboxylase P-protein 1 [Arabidopsis thaliana]	3187	2897	1328	1041
AT4G33110	no change	0.9591426342680476	0.18061743600455785	AT4G33110	--	GO:0000325,plant-type vacuole; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_001190896.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	110	140	98	90
AT4G33240	no change	-0.8652734052392121	-0.0866677811621445	AT4G33240	--	GO:0000166,nucleotide binding; GO:0000285,1-phosphatidylinositol-3-phosphate 5-kinase activity; GO:0005524,ATP binding; GO:0005768,endosome; GO:0007033,vacuole organization; GO:0009555,pollen development; GO:0010008,endosome membrane; GO:0010256,endomembrane system organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016307,phosphatidylinositol phosphate kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0044238,primary metabolic process; GO:0046488,phosphatidylinositol metabolic process; GO:0046854,phosphatidylinositol phosphate biosynthetic process; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process;	PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]; K00921;	NP_001190899.1 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A [Arabidopsis thaliana]	335	239	214	144
AT4G33630	no change	-0.05550998678118845	0.3894452887182327	AT4G33630	--	GO:0000304,response to singlet oxygen; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010343,singlet oxygen-mediated programmed cell death; GO:0042651,thylakoid membrane;	--	NP_001328575.1 UvrB/UvrC domain protein (DUF3506) [Arabidopsis thaliana]	237	172	227	131
AT4G33740	no change	-0.23669187571621533	-0.4672972570567876	AT4G33740	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001154285.1 myb-like protein X [Arabidopsis thaliana]	125	74	58	37
AT4G33970	no change	-0.45507707766746475	0.8357996738845295	AT4G33970	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_195123.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	135	67	129	105
AT4G34000	no change	-0.43137881424789304	-0.34930434689259227	AT4G34000	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription;	ABF; ABA responsive element binding factor; K14432;	NP_001320130.1 abscisic acid responsive elements-binding factor 3 [Arabidopsis thaliana]	35	30	31	5
AT4G34050	no change	-0.7377576773343495	-0.18018767679969216	AT4G34050	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009699,phenylpropanoid biosynthetic process; GO:0009805,coumarin biosynthetic process; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042409,caffeoyl-CoA O-methyltransferase activity; GO:0046872,metal ion binding;	E2.1.1.104; caffeoyl-CoA O-methyltransferase [EC:2.1.1.104]; K00588;	NP_001328048.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	1146	1075	737	564
AT4G34120	no change	0.4781066189310072	-0.719988462033457	AT4G34120	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0045454,cell redox homeostasis;	--	NP_567952.1 Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]	338	288	140	111
AT4G34131	no change	-0.7435007121664866	-0.8722654727149897	AT4G34131	--	GO:0006952,defense response; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0051707,response to other organism; GO:0071456,cellular response to hypoxia; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_567953.1 UDP-glucosyl transferase 73B3 [Arabidopsis thaliana]	13	10	3	5
AT4G34135	no change	-0.8451510148498108	-0.6533070900615838	AT4G34135	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009813,flavonoid biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0051707,response to other organism; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567954.1 UDP-glucosyltransferase 73B2 [Arabidopsis thaliana]	83	75	51	18
AT4G34160	no change	-0.3404192022443665	0.16232349897278958	AT4G34160	--	GO:0000079,regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0000082,G1/S transition of mitotic cell cycle; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0009735,response to cytokinin; GO:0009744,response to sucrose; GO:0010444,guard mother cell differentiation; GO:0016538,cyclin-dependent protein serine/threonine kinase regulator activity; GO:0044772,mitotic cell cycle phase transition; GO:0048316,seed development; GO:0051301,cell division;	CYCD3; cyclin D3, plant; K14505;	NP_195142.1 CYCLIN D3;1 [Arabidopsis thaliana]	19	7	17	3
AT4G34220	no change	0.00689775108621874	-0.4147107775777306	AT4G34220	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0010030,positive regulation of seed germination; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0042631,cellular response to water deprivation;	--	NP_567961.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	138	115	74	52
AT4G34290	no change	0.8460594382950393	-0.5553221985392561	AT4G34290	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005886,plasma membrane;	--	NP_195155.1 SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]	324	289	160	117
AT4G34950	no change	-0.6015296693899622	0.6821402521439662	AT4G34950	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_195221.1 Major facilitator superfamily protein [Arabidopsis thaliana]	384	396	502	337
AT4G34980	no change	-0.6781587912728622	-0.14662973510916572	AT4G34980	--	GO:0004252,serine-type endopeptidase activity; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0009827,plant-type cell wall modification; GO:0016787,hydrolase activity;	--	NP_567972.1 subtilisin-like serine protease 2 [Arabidopsis thaliana]	1657	1578	1126	820
AT4G35040	no change	0.24507627945450777	0.8932320343674256	AT4G35040	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010043,response to zinc ion;	--	NP_001320139.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]	61	55	82	61
AT4G35300	no change	0.6956054285420924	-0.17769073869156174	AT4G35300	--	GO:0000325,plant-type vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009705,plant-type vacuole membrane; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0009750,response to fructose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902074,response to salt;	--	NP_001190923.1 tonoplast monosaccharide transporter2 [Arabidopsis thaliana]	893	678	480	428
AT4G35850	no change	0.229154158817634	-0.07839835903250107	AT4G35850	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_567990.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	432	368	251	244
AT4G35860	no change	0.39907332028110987	0.17760740475876452	AT4G35860	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030100,regulation of endocytosis;	RAB2A; Ras-related protein Rab-2A; K07877;	NP_195311.1 GTP-binding 2 [Arabidopsis thaliana]	194	172	195	87
AT4G35940	no change	0.16390460678550703	-0.17221413494790122	AT4G35940	--	--	--	NP_195319.1 hypothetical protein AT4G35940 [Arabidopsis thaliana]	29	30	26	10
AT4G36030	no change	-0.3797960180924612	0.4291058047743292	AT4G36030	--	GO:0005515,protein binding; GO:0007166,cell surface receptor signaling pathway;	--	NP_195327.1 armadillo repeat only 3 [Arabidopsis thaliana]	25	32	27	24
AT4G36040	no change	0.903891999206812	-0.34491905631030856	AT4G36040	--	GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma;	--	NP_195328.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	329	288	184	138
AT4G36720	no change	0.553519364210982	-0.7027409029664461	AT4G36720	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_195390.2 HVA22-like protein K [Arabidopsis thaliana]	19	22	16	2
AT4G36730	no change	0.03353264156406868	0.8073416324669198	AT4G36730	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_849510.1 G-box binding factor 1 [Arabidopsis thaliana]	18	25	26	24
AT4G36810	no change	-0.2915816017170556	-0.9097308818921284	AT4G36810	--	GO:0004161,dimethylallyltranstransferase activity; GO:0004311,farnesyltranstransferase activity; GO:0004337,geranyltranstransferase activity; GO:0004659,prenyltransferase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009513,etioplast; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0016117,carotenoid biosynthetic process; GO:0016740,transferase activity; GO:0033384,geranyl diphosphate biosynthetic process; GO:0033386,geranylgeranyl diphosphate biosynthetic process; GO:0043693,monoterpene biosynthetic process; GO:0045337,farnesyl diphosphate biosynthetic process; GO:0046872,metal ion binding;	GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; K13789;	NP_195399.1 geranylgeranyl pyrophosphate synthase 1 [Arabidopsis thaliana]	331	307	126	99
AT4G36940	no change	0.0865861454926809	0.21687554568113665	AT4G36940	--	GO:0004514,nicotinate-nucleotide diphosphorylase (carboxylating) activity; GO:0004516,nicotinate phosphoribosyltransferase activity; GO:0005829,cytosol; GO:0009435,NAD biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016874,ligase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0034355,NAD salvage; GO:0046872,metal ion binding;	pncB, NAPRT1; nicotinate phosphoribosyltransferase [EC:6.3.4.21]; K00763;	NP_195412.3 nicotinate phosphoribosyltransferase 1 [Arabidopsis thaliana]	151	115	111	92
AT4G36945	no change	0.1066654090874412	-0.7702070639340868	AT4G36945	--	GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity;	--	NP_001078503.4 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]	121	102	30	53
AT4G36970	no change	-0.103610378457037	-0.26966784250910253	AT4G36970	--	GO:1901700,response to oxygen-containing compound;	--	NP_568012.1 Remorin family protein [Arabidopsis thaliana]	27	45	21	19
AT4G37190	no change	-0.10915016894751974	-0.03792714873566105	AT4G37190	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005739,mitochondrion;	--	NP_195436.1 plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein [Arabidopsis thaliana]	28	37	27	16
AT4G37300	no change	0.7306575736483282	0.877905444632593	AT4G37300	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009793,embryo development ending in seed dormancy;	--	NP_195447.1 maternal effect embryo arrest 59 [Arabidopsis thaliana]	313	172	340	244
AT4G37310	no change	-0.29889269278600605	0.884707179399671	AT4G37310	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_568024.2 cytochrome P450, family 81, subfamily H, polypeptide 1 [Arabidopsis thaliana]	88	56	127	53
AT4G37320	no change	0.8926266057344526	-0.1906958932051066	AT4G37320	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_195449.1 cytochrome P450, family 81, subfamily D, polypeptide 5 [Arabidopsis thaliana]	85	101	62	47
AT4G37430	no change	-0.18650119540851187	0.5521113739249531	AT4G37430	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042343,indole glucosinolate metabolic process; GO:0046872,metal ion binding;	--	NP_195459.1 cytochrome P450, family 91, subfamily A, polypeptide 2 [Arabidopsis thaliana]	94	88	100	77
AT4G37470	no change	0.11105475026737643	0.4146192252226593	AT4G37470	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009640,photomorphogenesis; GO:0009704,de-etiolation; GO:0016787,hydrolase activity; GO:0080167,response to karrikin;	--	NP_195463.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	263	218	215	204
AT4G37540	no change	-0.05749224908398829	-0.05992878231582762	AT4G37540	LBD	GO:0005575,cellular_component; GO:0010468,regulation of gene expression;	--	NP_195470.1 LOB domain-containing protein 39 [Arabidopsis thaliana]	21	22	13	14
AT4G37550	no change	-0.20644910653531456	0.1220714150905517	AT4G37550	--	GO:0000325,plant-type vacuole; GO:0004328,formamidase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	E3.5.1.49; formamidase [EC:3.5.1.49]; K01455;	NP_001031801.1 Acetamidase/Formamidase family protein [Arabidopsis thaliana]	74	100	82	47
AT4G37610	no change	-0.02263453760314901	0.40658360369642726	AT4G37610	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009725,response to hormone; GO:0009733,response to auxin; GO:0009751,response to salicylic acid; GO:0010468,regulation of gene expression; GO:0016567,protein ubiquitination; GO:0042542,response to hydrogen peroxide; GO:0046872,metal ion binding;	--	NP_568031.1 BTB and TAZ domain protein 5 [Arabidopsis thaliana]	4	10	9	4
AT4G37660	no change	0.5033886686313928	0.7464527662111967	AT4G37660	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:1990904,ribonucleoprotein complex;	RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12; K02935;	NP_195481.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein [Arabidopsis thaliana]	60	25	40	50
AT4G37925	no change	-0.7000565732243854	-0.3002931128592188	AT4G37925	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010258,NADH dehydrogenase complex (plastoquinone) assembly; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0016655,oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; GO:0048038,quinone binding;	--	NP_001031804.1 subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex [Arabidopsis thaliana]	136	137	92	57
AT4G38170	no change	0.5185486631938692	0.01199015103548031	AT4G38170	--	GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_195530.2 FAR1-related sequence 9 [Arabidopsis thaliana]	61	64	32	49
AT4G38180	no change	0.6432046165353823	0.00691462534023244	AT4G38180	FAR1	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_195531.1 FAR1-related sequence 5 [Arabidopsis thaliana]	47	42	48	14
AT4G38210	no change	0.4825314156639737	0.3966144973127956	AT4G38210	--	GO:0005576,extracellular region; GO:0006949,syncytium formation; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0071555,cell wall organization;	--	NP_195534.1 expansin A20 [Arabidopsis thaliana]	26	24	16	26
AT4G38225	no change	-0.9312951588233676	0.28399120744089557	AT4G38225	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_974705.1 glycerol kinase [Arabidopsis thaliana]	63	43	49	36
AT4G38230	no change	-0.16338363052899088	-0.9453593813069396	AT4G38230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_195536.2 calcium-dependent protein kinase 26 [Arabidopsis thaliana]	53	29	17	11
AT4G38250	no change	-0.16270314701550548	0.05794388562741329	AT4G38250	--	GO:0003333,amino acid transmembrane transport; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006865,amino acid transport; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport;	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209;	NP_195538.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	443	312	309	211
AT4G38370	no change	-0.0601722011954632	-0.0957175136606676	AT4G38370	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_568040.1 Phosphoglycerate mutase family protein [Arabidopsis thaliana]	39	33	33	13
AT4G38460	no change	-0.3708206744674122	0.14127666012710893	AT4G38460	--	GO:0004161,dimethylallyltranstransferase activity; GO:0004659,prenyltransferase activity; GO:0005515,protein binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0042651,thylakoid membrane; GO:0043693,monoterpene biosynthetic process; GO:0046872,metal ion binding;	GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; K13789;	NP_195558.1 geranylgeranyl reductase [Arabidopsis thaliana]	519	496	409	332
AT4G38490	no change	0.2536616177480088	-0.4126235720509798	AT4G38490	--	GO:0005515,protein binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009528,plastid inner membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0071806,protein transmembrane transport; GO:0090351,seedling development;	--	NP_568043.1 transmembrane protein [Arabidopsis thaliana]	38	36	27	11
AT4G38500	no change	0.3168120733074339	-0.05777768133000656	AT4G38500	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane;	--	NP_568044.1 Sept9 (DUF616) [Arabidopsis thaliana]	63	56	55	23
AT4G38510	no change	0.64051521419951	0.1864816922506866	AT4G38510	--	GO:0000221,vacuolar proton-transporting V-type ATPase, V1 domain; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0007035,vacuolar acidification; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0030835,negative regulation of actin filament depolymerization; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0046034,ATP metabolic process; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:0051015,actin filament binding; GO:0051017,actin filament bundle assembly; GO:0051693,actin filament capping; GO:1902600,proton transmembrane transport;	ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B; K02147;	NP_001190954.1 ATPase, V1 complex, subunit B protein [Arabidopsis thaliana]	1015	816	749	621
AT4G38550	no change	-0.26104719621890216	-0.4794561700991148	AT4G38550	--	GO:0005886,plasma membrane;	--	NP_001328679.1 phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]	71	64	41	24
AT4G38650	no change	-0.5885506842687666	-0.680785461074121	AT4G38650	--	GO:0000272,polysaccharide catabolic process; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0016787,hydrolase activity; GO:0031176,endo-1,4-beta-xylanase activity;	--	NP_195577.2 Glycosyl hydrolase family 10 protein [Arabidopsis thaliana]	19	20	8	8
AT4G38700	no change	-0.4396429758549655	-0.6293644514620589	AT4G38700	--	GO:0005576,extracellular region; GO:0009699,phenylpropanoid biosynthetic process; GO:0048046,apoplast;	--	NP_195582.2 Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]	20	19	11	6
AT4G38800	no change	0.16561890345434763	0.1267718400642852	AT4G38800	--	GO:0000003,reproduction; GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008652,cellular amino acid biosynthetic process; GO:0008930,methylthioadenosine nucleosidase activity; GO:0009086,methionine biosynthetic process; GO:0009116,nucleoside metabolic process; GO:0010087,phloem or xylem histogenesis; GO:0016787,hydrolase activity; GO:0019509,L-methionine salvage from methylthioadenosine;	MTN; 5'-methylthioadenosine nucleosidase [EC:3.2.2.16]; K01244;	NP_195591.1 methylthioadenosine nucleosidase 1 [Arabidopsis thaliana]	265	224	168	179
AT4G39090	no change	-0.3758555652585384	-0.10306093803727072	AT4G39090	--	GO:0000323,lytic vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005764,lysosome; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0006970,response to osmotic stress; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009651,response to salt stress; GO:0016787,hydrolase activity; GO:0042742,defense response to bacterium; GO:0051603,proteolysis involved in protein catabolic process;	CTSF; cathepsin F [EC:3.4.22.41]; K01373;	NP_568052.1 Papain family cysteine protease [Arabidopsis thaliana]	3398	2988	2245	1696
AT4G39180	no change	-0.39517337958267745	-0.3287694892162326	AT4G39180	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006656,phosphatidylcholine biosynthetic process; GO:0015031,protein transport; GO:0016020,membrane;	--	NP_001190963.1 Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]	90	97	44	53
AT4G39190	no change	-0.28571628909716307	0.4840736343648813	AT4G39190	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_195630.1 nucleolar-like protein [Arabidopsis thaliana]	38	21	31	23
AT4G39235	no change	-0.1510410058255023	0.5773178856807776	AT4G39235	--	GO:0008150,biological_process;	--	NP_001328086.1 hypothetical protein AT4G39235 [Arabidopsis thaliana]	48	32	27	48
AT4G39260	no change	0.33475199646871806	0.4699990918236054	AT4G39260	--	GO:0000380,alternative mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006397,mRNA processing; GO:0006858,extracellular transport; GO:0008380,RNA splicing; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0010043,response to zinc ion; GO:0035197,siRNA binding; GO:0035198,miRNA binding; GO:0045087,innate immune response; GO:0050658,RNA transport; GO:0050688,regulation of defense response to virus; GO:1990428,miRNA transport;	--	NP_195637.1 cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]	5522	5159	5112	4610
AT4G39630	no change	0.3849496659259049	-0.824016951091818	AT4G39630	--	GO:0000775,chromosome, centromeric region; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0006413,translational initiation;	--	NP_001327971.1 translation initiation factor [Arabidopsis thaliana]	25	13	8	6
AT4G39840	no change	0.0315632336721202	0.1336857794501335	AT4G39840	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_195694.1 cell wall integrity/stress response component-like protein [Arabidopsis thaliana]	149	141	108	101
AT4G39970	no change	-0.12263344826108148	-0.13058193302256188	AT4G39970	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_568077.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]	240	201	165	104
AT4G40000	no change	0.905717780407828	0.3496137492372267	AT4G40000	--	GO:0000049,tRNA binding; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0008033,tRNA processing; GO:0008168,methyltransferase activity; GO:0016428,tRNA (cytosine-5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0030488,tRNA methylation; GO:0032259,methylation;	--	NP_195710.3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	94	68	36	91
AT4G40060	no change	-0.6732378199424719	0.6135021778755483	AT4G40060	HD-ZIP	GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009637,response to blue light; GO:0030308,negative regulation of cell growth; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0048573,photoperiodism, flowering;	--	NP_195716.1 homeobox protein 16 [Arabidopsis thaliana]	128	112	137	106
AT5G01170	no change	0.22492091106422893	-0.3748265183446714	AT5G01170	--	GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0010088,phloem development; GO:0016020,membrane; GO:0030154,cell differentiation; GO:2000280,regulation of root development;	--	NP_195737.1 hypothetical protein (DUF740) [Arabidopsis thaliana]	30	10	12	8
AT5G01210	no change	-0.9922528631308472	-0.4559513216580753	AT5G01210	--	GO:0016740,transferase activity;	--	NP_195741.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	232	201	135	77
AT5G01530	no change	-0.22133828804480032	-0.5303256335513951	AT5G01530	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915;	NP_195773.1 light harvesting complex photosystem II [Arabidopsis thaliana]	6366	5978	3133	2524
AT5G01540	no change	0.1313862642318164	0.7414817054473817	AT5G01540	--	GO:0000166,nucleotide binding; GO:0002221,pattern recognition receptor signaling pathway; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195774.1 lectin receptor kinase a4.1 [Arabidopsis thaliana]	11	9	12	10
AT5G01560	no change	-0.3939083350890611	0.5246786524418164	AT5G01560	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195776.2 lectin receptor kinase a4.3 [Arabidopsis thaliana]	12	19	22	9
AT5G01600	no change	-0.5768554574987486	0.15332502099580772	AT5G01600	--	GO:0000302,response to reactive oxygen species; GO:0004322,ferroxidase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006826,iron ion transport; GO:0006879,cellular iron ion homeostasis; GO:0006880,intracellular sequestering of iron ion; GO:0008198,ferrous iron binding; GO:0008199,ferric iron binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009617,response to bacterium; GO:0009908,flower development; GO:0010039,response to iron ion; GO:0010043,response to zinc ion; GO:0015979,photosynthesis; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0042542,response to hydrogen peroxide; GO:0042802,identical protein binding; GO:0046872,metal ion binding; GO:0048366,leaf development; GO:0055072,iron ion homeostasis;	FTH1; ferritin heavy chain [EC:1.16.3.2]; K00522;	NP_195780.1 ferretin 1 [Arabidopsis thaliana]	1190	1000	954	665
AT5G01640	no change	0.23024201485185428	-0.5031312114784939	AT5G01640	--	GO:0005515,protein binding; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	--	NP_195784.1 prenylated RAB acceptor 1.B5 [Arabidopsis thaliana]	11	8	6	3
AT5G01750	no change	-0.04143806551644585	-0.3923351451030967	AT5G01750	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0019904,protein domain specific binding;	--	NP_568095.1 LURP-one-like protein (DUF567) [Arabidopsis thaliana]	463	330	212	183
AT5G01830	no change	0.00972612941812899	-0.9327970767456106	AT5G01830	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_195803.1 ARM repeat superfamily protein [Arabidopsis thaliana]	22	2	5	3
AT5G01920	no change	-0.3905109542269145	0.03196336773723689	AT5G01920	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042549,photosystem II stabilization; GO:0106310,protein serine kinase activity;	--	BAC41802.1 unknown protein [Arabidopsis thaliana]	301	248	184	182
AT5G01930	no change	-0.41782926084030025	-0.25792735717606474	AT5G01930	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0008152,metabolic process; GO:0009845,seed germination; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016985,mannan endo-1,4-beta-mannosidase activity; GO:0071704,organic substance metabolic process;	MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]; K19355;	NP_195813.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	75	56	24	45
AT5G01970	no change	-0.03839787974913068	-0.9422516792308202	AT5G01970	--	GO:0012506,vesicle membrane; GO:0080115,myosin XI tail binding;	--	NP_195817.1 heat-inducible transcription repressor [Arabidopsis thaliana]	38	38	19	8
AT5G01980	no change	0.14655896594497878	-0.5424045828261272	AT5G01980	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_195818.1 RING/U-box superfamily protein [Arabidopsis thaliana]	37	30	15	15
AT5G01990	no change	-0.6954168622127042	-0.20750599944680376	AT5G01990	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:0080162,endoplasmic reticulum to cytosol auxin transport;	--	NP_195819.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	167	139	82	90
AT5G02120	no change	0.27428673761723554	0.4112159578706439	AT5G02120	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007623,circadian rhythm; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0010207,photosystem II assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding;	--	NP_195832.1 one helix protein [Arabidopsis thaliana]	193	138	171	120
AT5G02130	no change	-0.03020107112747936	0.39462100258503846	AT5G02130	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0010073,meristem maintenance; GO:1901703,protein localization involved in auxin polar transport;	--	NP_195833.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	63	47	63	34
AT5G02150	no change	-0.6767234954868385	-0.1966087299892888	AT5G02150	--	GO:0000774,adenyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0008150,biological_process;	HSPBP1, FES1; hsp70-interacting protein; K09562;	NP_001332564.1 Fes1C [Arabidopsis thaliana]	19	9	15	2
AT5G02280	no change	0.5977890653979556	0.4800334806958618	AT5G02280	--	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0016192,vesicle-mediated transport; GO:0030008,TRAPP complex; GO:0048193,Golgi vesicle transport;	--	NP_195848.1 SNARE-like superfamily protein [Arabidopsis thaliana]	53	52	43	52
AT5G02290	no change	0.35061121266498024	0.19915313332412465	AT5G02290	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_195849.1 Protein kinase superfamily protein [Arabidopsis thaliana]	52	81	64	40
AT5G02520	no change	0.03313985444885643	-0.819994561729796	AT5G02520	--	GO:0000775,chromosome, centromeric region; GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0007049,cell cycle; GO:0010369,chromocenter; GO:0016604,nuclear body; GO:0051301,cell division; GO:0051321,meiotic cell cycle;	--	NP_568101.4 dentin sialophosphoprotein-like protein [Arabidopsis thaliana]	34	24	20	3
AT5G02560	no change	0.42759092793400694	0.01631216068041538	AT5G02560	--	GO:0000775,chromosome, centromeric region; GO:0000786,nucleosome; GO:0000792,heterochromatin; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; GO:0070828,heterochromatin organization;	H2A; histone H2A; K11251;	NP_195876.1 histone H2A 12 [Arabidopsis thaliana]	58	37	25	36
AT5G02720	no change	0.2093592792979972	-0.44137538789333297	AT5G02720	--	GO:0016020,membrane; GO:0016874,ligase activity;	--	NP_001318460.1 valine-tRNA ligase [Arabidopsis thaliana]	35	18	12	13
AT5G02760	no change	0.05323806957442323	-0.8603328234053339	AT5G02760	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0043169,cation binding; GO:0046872,metal ion binding; GO:1900056,negative regulation of leaf senescence;	--	NP_195896.2 Protein phosphatase 2C family protein [Arabidopsis thaliana]	6	16	3	5
AT5G03160	no change	-0.6564333917819218	-0.5498131984291531	AT5G03160	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0044794,positive regulation by host of viral process;	DNAJC3; DnaJ homolog subfamily C member 3; K09523;	NP_195936.1 DnaJ P58IPK-like protein [Arabidopsis thaliana]	243	180	95	93
AT5G03190	no change	0.5769035132380627	-0.6102666089382839	AT5G03190	--	GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_195939.1 peptide upstream protein [Arabidopsis thaliana]	39	40	17	17
AT5G03430	no change	0.46892689956461225	0.14469418328064565	AT5G03430	--	GO:0003824,catalytic activity; GO:0003919,FMN adenylyltransferase activity; GO:0006747,FAD biosynthetic process;	--	NP_568117.1 phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana]	151	117	119	78
AT5G03490	no change	0.10450558884044564	0.1809621509844048	AT5G03490	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity;	--	NP_195969.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	63	40	51	27
AT5G03880	no change	-0.47580396062694896	0.5191441989437001	AT5G03880	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009941,chloroplast envelope;	--	NP_568128.1 Thioredoxin family protein [Arabidopsis thaliana]	184	148	156	154
AT5G03905	no change	-0.6318368328094911	0.6792389514226322	AT5G03905	--	GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0016226,iron-sulfur cluster assembly; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0106035,protein maturation by [4Fe-4S] cluster transfer;	--	NP_568130.1 Iron-sulfur cluster biosynthesis family protein [Arabidopsis thaliana]	21	32	42	17
AT5G03910	no change	0.917285997154898	0.4979113621986123	AT5G03910	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	--	NP_196011.1 ABC2 homolog 12 [Arabidopsis thaliana]	117	67	102	69
AT5G04090	no change	0.8750201974826654	0.12962302369935202	AT5G04090	--	GO:0003674,molecular_function; GO:0016874,ligase activity;	--	NP_974728.2 histidine-tRNA ligase [Arabidopsis thaliana]	103	80	69	62
AT5G04140	no change	0.9178646053055918	-0.04689421409527845	AT5G04140	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005886,plasma membrane; GO:0006537,glutamate biosynthetic process; GO:0006541,glutamine metabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015930,glutamate synthase activity; GO:0016040,glutamate synthase (NADH) activity; GO:0016041,glutamate synthase (ferredoxin) activity; GO:0016491,oxidoreductase activity; GO:0016638,oxidoreductase activity, acting on the CH-NH2 group of donors; GO:0019676,ammonia assimilation cycle; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0051536,iron-sulfur cluster binding; GO:0051538,3 iron, 4 sulfur cluster binding; GO:0080114,positive regulation of glycine hydroxymethyltransferase activity; GO:0097054,L-glutamate biosynthetic process;	GLU, gltS; glutamate synthase (ferredoxin) [EC:1.4.7.1]; K00284;	NP_568134.1 glutamate synthase 1 [Arabidopsis thaliana]	1161	1144	903	593
AT5G04180	no change	0.15494219595983874	-0.6675675254348244	AT5G04180	--	GO:0004089,carbonate dehydratase activity; GO:0006730,one-carbon metabolic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010037,response to carbon dioxide; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0046872,metal ion binding;	cah; carbonic anhydrase [EC:4.2.1.1]; K01674;	NP_196038.1 alpha carbonic anhydrase 3 [Arabidopsis thaliana]	198	174	93	63
AT5G04250	no change	-0.09750299372391856	-0.3883342390882355	AT5G04250	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001119168.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	47	37	22	20
AT5G04310	no change	0.7930674636760126	-0.4159207638210974	AT5G04310	--	GO:0009664,plant-type cell wall organization; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding;	pel; pectate lyase [EC:4.2.2.2]; K01728;	NP_001318478.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	12	12	7	5
AT5G04330	no change	-0.3266280861322105	0.05610824840957979	AT5G04330	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0009809,lignin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	CYP84A, F5H; ferulate-5-hydroxylase [EC:1.14.-.-]; K09755;	NP_196053.2 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	13	3	8	3
AT5G04470	no change	-0.3779382412743795	0.23710456376224456	AT5G04470	--	GO:0004860,protein kinase inhibitor activity; GO:0004861,cyclin-dependent protein serine/threonine kinase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0007049,cell cycle; GO:0010026,trichome differentiation; GO:0032875,regulation of DNA endoreduplication; GO:0042023,DNA endoreduplication; GO:0045736,negative regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0045786,negative regulation of cell cycle; GO:0045839,negative regulation of mitotic nuclear division;	--	NP_196067.1 cyclin-dependent protein kinase inhibitor [Arabidopsis thaliana]	4	10	5	6
AT5G04510	no change	0.2397669126047625	0.5196345305488345	AT5G04510	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035091,phosphatidylinositol binding; GO:0035556,intracellular signal transduction; GO:0045860,positive regulation of protein kinase activity; GO:0046777,protein autophosphorylation; GO:0070300,phosphatidic acid binding; GO:0106310,protein serine kinase activity;	PDPK1; 3-phosphoinositide dependent protein kinase-1 [EC:2.7.11.1]; K06276;	NP_974730.1 3'-phosphoinositide-dependent protein kinase 1 [Arabidopsis thaliana]	59	38	40	49
AT5G04600	no change	-0.28736136405220475	-0.0079778631980973	AT5G04600	--	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus;	--	NP_196080.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	156	180	136	89
AT5G04670	no change	-0.5552572478228063	0.07331228863101927	AT5G04670	--	GO:0005634,nucleus; GO:0006357,regulation of transcription by RNA polymerase II; GO:0032777,Piccolo NuA4 histone acetyltransferase complex; GO:0035267,NuA4 histone acetyltransferase complex;	--	NP_001330507.1 Enhancer of polycomb-like transcription factor protein [Arabidopsis thaliana]	90	52	57	41
AT5G04660	no change	-0.25190060607407844	-0.5798295931398577	AT5G04660	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019395,fatty acid oxidation; GO:0020037,heme binding; GO:0046872,metal ion binding;	CYP77A; cytochrome P450 family 77 subfamily A [EC:1.14.-.-]; K21995;	NP_196086.1 cytochrome P450, family 77, subfamily A, polypeptide 4 [Arabidopsis thaliana]	130	137	51	65
AT5G04700	no change	0.47032387606748566	0.4558097929225241	AT5G04700	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_196090.1 Ankyrin repeat family protein [Arabidopsis thaliana]	13	13	15	9
AT5G04760	no change	0.304412270814481	-0.7187053207465722	AT5G04760	MYB	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009751,response to salicylic acid; GO:0090359,negative regulation of abscisic acid biosynthetic process; GO:1902074,response to salt;	--	NP_196096.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	56	43	30	11
AT5G04800	no change	0.7776218181683099	0.4399201804531527	AT5G04800	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:1990904,ribonucleoprotein complex;	RP-S17e, RPS17; small subunit ribosomal protein S17e; K02962;	NP_001031834.1 Ribosomal S17 family protein [Arabidopsis thaliana]	1017	984	1010	791
AT5G04820	no change	-0.11941465852072634	-0.03876433278368243	AT5G04820	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_196102.1 ovate family protein 13 [Arabidopsis thaliana]	40	44	28	26
AT5G05160	no change	-0.30655528278781713	-0.733628391366375	AT5G05160	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:2000605,positive regulation of secondary growth;	--	NP_196135.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	40	31	15	13
AT5G05190	no change	-0.43480447270207034	-0.43658827525581584	AT5G05190	--	GO:0005515,protein binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0006952,defense response; GO:0009620,response to fungus; GO:0009863,salicylic acid mediated signaling pathway; GO:0016020,membrane; GO:0030100,regulation of endocytosis; GO:1900150,regulation of defense response to fungus;	--	NP_196138.1 hypothetical protein (DUF3133) [Arabidopsis thaliana]	20	8	11	3
AT5G05200	no change	0.700852448712516	-0.3677573767513164	AT5G05200	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005743,mitochondrial inner membrane; GO:0005886,plasma membrane; GO:0007005,mitochondrion organization; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031966,mitochondrial membrane; GO:0055088,lipid homeostasis;	--	NP_568150.1 Protein kinase superfamily protein [Arabidopsis thaliana]	228	272	130	126
AT5G05440	no change	0.8699969642159044	-0.8240566654870236	AT5G05440	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0043086,negative regulation of catalytic activity; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_196163.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	66	52	25	19
AT5G05470	no change	0.3567892028833554	0.22663735874940205	AT5G05470	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005850,eukaryotic translation initiation factor 2 complex; GO:0005851,eukaryotic translation initiation factor 2B complex; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0008150,biological_process; GO:0033290,eukaryotic 48S preinitiation complex; GO:0043022,ribosome binding; GO:0043614,multi-eIF complex;	EIF2S1; translation initiation factor 2 subunit 1; K03237;	NP_196166.1 eukaryotic translation initiation factor 2 alpha subunit [Arabidopsis thaliana]	226	236	199	160
AT5G05480	no change	0.497543168756533	0.09452536267504862	AT5G05480	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_568155.1 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana]	47	62	44	34
AT5G05560	no change	0.09530018542395433	0.8316920427157287	AT5G05560	--	GO:0005680,anaphase-promoting complex; GO:0016020,membrane;	APC1; anaphase-promoting complex subunit 1; K03348;	NP_001331419.1 E3 ubiquitin ligase [Arabidopsis thaliana]	70	82	104	77
AT5G05690	no change	0.7913485857359549	0.13949250508482677	AT5G05690	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0009911,positive regulation of flower development; GO:0010224,response to UV-B; GO:0010268,brassinosteroid homeostasis; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0048657,anther wall tapetum cell differentiation;	CYP90A1, CPD; cytochrome P450 family 90 subfamily A polypeptide 1 [EC:1.14.-.-]; K09588;	NP_196188.1 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	321	279	245	192
AT5G06050	no change	0.944429277455088	0.01868727674555116	AT5G06050	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_196224.1 Putative methyltransferase family protein [Arabidopsis thaliana]	167	170	128	99
AT5G06190	no change	-0.9395615213521116	-0.22457528992189552	AT5G06190	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001190238.1 transmembrane protein [Arabidopsis thaliana]	39	37	29	15
AT5G06220	no change	-0.04476309100461859	0.07032912450837525	AT5G06220	--	GO:0003674,molecular_function; GO:0005743,mitochondrial inner membrane; GO:0006875,cellular metal ion homeostasis; GO:0009941,chloroplast envelope;	--	NP_001190239.1 LETM1-like protein [Arabidopsis thaliana]	259	273	200	170
AT5G06265	no change	-0.26536552796053814	-0.27729947477681816	AT5G06265	--	GO:0008150,biological_process;	--	NP_001330372.1 hyaluronan mediated motility receptor-like protein [Arabidopsis thaliana]	13	4	5	4
AT5G06280	no change	-0.3200519304989375	0.4102100118710824	AT5G06280	--	GO:0008150,biological_process;	--	NP_196246.1 hypothetical protein AT5G06280 [Arabidopsis thaliana]	62	53	41	57
AT5G06320	no change	0.7481226690901468	0.1899255234616541	AT5G06320	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009751,response to salicylic acid; GO:0016020,membrane; GO:0042742,defense response to bacterium; GO:0051607,defense response to virus; GO:0071456,cellular response to hypoxia; GO:0098542,defense response to other organism;	--	NP_196250.1 NDR1/HIN1-like 3 [Arabidopsis thaliana]	199	118	96	133
AT5G06860	no change	-0.1114099863178278	-0.6986749592779425	AT5G06860	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043086,negative regulation of catalytic activity; GO:0090353,polygalacturonase inhibitor activity; GO:0099503,secretory vesicle;	--	NP_196304.1 polygalacturonase inhibiting protein 1 [Arabidopsis thaliana]	142	146	72	47
AT5G06870	no change	-0.1303194134424961	-0.07649696220024631	AT5G06870	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043086,negative regulation of catalytic activity; GO:0090353,polygalacturonase inhibitor activity;	--	NP_196305.1 polygalacturonase inhibiting protein 2 [Arabidopsis thaliana]	464	446	308	262
AT5G07000	no change	0.13517017225994446	-0.00437145427325879	AT5G07000	--	GO:0005737,cytoplasm; GO:0008146,sulfotransferase activity; GO:0016740,transferase activity; GO:0051923,sulfation;	ST2A, SOT15; hydroxyjasmonate sulfotransferase [EC:2.8.2.39]; K22312;	NP_196317.2 sulfotransferase 2B [Arabidopsis thaliana]	251	161	79	174
AT5G07240	no change	0.05792196056791481	-0.29677737222926603	AT5G07240	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016604,nuclear body;	--	NP_001332444.1 IQ-domain 24 [Arabidopsis thaliana]	27	16	8	14
AT5G07360	no change	0.5238248842116071	-0.08915767627524637	AT5G07360	--	GO:0003824,catalytic activity; GO:0008150,biological_process;	--	NP_001331984.1 Amidase family protein [Arabidopsis thaliana]	72	137	74	59
AT5G07590	no change	0.15419526382214552	0.00204592754076745	AT5G07590	--	GO:0000070,mitotic sister chromatid segregation; GO:0005515,protein binding; GO:0005815,microtubule organizing center; GO:0072686,mitotic spindle; GO:1902440,protein localization to mitotic spindle pole body; GO:1990811,MWP complex;	--	CAD5331094.1 unnamed protein product [Arabidopsis thaliana]	86	54	58	35
AT5G07940	no change	0.5300229292278845	0.967042572051158	AT5G07940	--	--	--	NP_001331336.1 dentin sialophosphoprotein-like protein [Arabidopsis thaliana]	38	58	90	40
AT5G07950	no change	-0.02793659102380595	0.539896022907129	AT5G07950	--	GO:0008150,biological_process;	--	NP_568186.1 hypothetical protein AT5G07950 [Arabidopsis thaliana]	15	14	16	12
AT5G08280	no change	-0.5739088062987361	-0.344065134717554	AT5G08280	--	GO:0004418,hydroxymethylbilane synthase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016740,transferase activity; GO:0018160,peptidyl-pyrromethane cofactor linkage; GO:0033014,tetrapyrrole biosynthetic process; GO:0048046,apoplast; GO:1900865,chloroplast RNA modification;	hemC, HMBS; hydroxymethylbilane synthase [EC:2.5.1.61]; K01749;	NP_196445.1 hydroxymethylbilane synthase [Arabidopsis thaliana]	773	708	445	330
AT5G08350	no change	0.310244789308345	-0.5504645846656623	AT5G08350	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_196452.1 GRAM domain-containing protein / ABA-responsive protein-like protein [Arabidopsis thaliana]	14	7	9	1
AT5G08390	no change	0.344108347331332	-0.1965830678503541	AT5G08390	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007019,microtubule depolymerization; GO:0008017,microtubule binding; GO:0008352,katanin complex; GO:0015630,microtubule cytoskeleton; GO:0051013,microtubule severing; GO:0051510,regulation of unidimensional cell growth; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	--	NP_568194.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	52	47	31	26
AT5G08510	no change	0.6673256698072362	0.22130385743957412	AT5G08510	--	GO:0005515,protein binding;	--	NP_196468.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	12	16	13	9
AT5G08770	no change	-0.7245460558813801	0.09526210822320834	AT5G08770	--	GO:0008150,biological_process;	--	NP_680159.1 topoisomerase I damage affected-like protein [Arabidopsis thaliana]	12	7	6	7
AT5G08780	no change	-0.27355561810950413	0.7374754434511974	AT5G08780	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_680160.2 winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]	53	33	48	45
AT5G08790	no change	0.5171446877671245	-0.6167005570249025	AT5G08790	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008361,regulation of cell size; GO:0009416,response to light stimulus; GO:0009611,response to wounding; GO:0009620,response to fungus; GO:0009744,response to sucrose; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0009793,embryo development ending in seed dormancy; GO:0010099,regulation of photomorphogenesis; GO:0010150,leaf senescence; GO:0043424,protein histidine kinase binding; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_680161.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Arabidopsis thaliana]	51	56	29	18
AT5G09230	no change	-0.6331190543049109	-0.128025911520908	AT5G09230	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006476,protein deacetylation; GO:0008270,zinc ion binding; GO:0009873,ethylene-activated signaling pathway; GO:0016740,transferase activity; GO:0019213,deacetylase activity; GO:0031348,negative regulation of defense response; GO:0033558,protein lysine deacetylase activity; GO:0034979,NAD-dependent protein deacetylase activity; GO:0042742,defense response to bacterium; GO:0043970,histone H3-K9 acetylation; GO:0046872,metal ion binding; GO:0051287,NAD binding; GO:0070403,NAD+ binding;	SIRT4, SIR2L4; NAD+-dependent protein deacetylase sirtuin 4 [EC:2.3.1.286]; K11414;	NP_568207.1 sirtuin 2 [Arabidopsis thaliana]	55	46	34	27
AT5G09240	no change	-0.04753837387024117	0.3120697428385058	AT5G09240	--	GO:0003677,DNA binding; GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0060261,positive regulation of transcription initiation by RNA polymerase II;	--	NP_850798.2 ssDNA-binding transcriptional regulator [Arabidopsis thaliana]	32	35	29	26
AT5G09660	no change	-0.48198772353988534	-0.4960486243817545	AT5G09660	--	GO:0000325,plant-type vacuole; GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006097,glyoxylate cycle; GO:0006099,tricarboxylic acid cycle; GO:0006108,malate metabolic process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016615,malate dehydrogenase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0030060,L-malate dehydrogenase activity; GO:0031998,regulation of fatty acid beta-oxidation; GO:0042579,microbody; GO:0048046,apoplast; GO:0080093,regulation of photorespiration;	MDH2; malate dehydrogenase [EC:1.1.1.37]; K00026;	NP_196528.1 peroxisomal NAD-malate dehydrogenase 2 [Arabidopsis thaliana]	419	373	216	157
AT5G10060	no change	0.6563845468145763	0.03973967420147901	AT5G10060	--	GO:0000993,RNA polymerase II complex binding; GO:0006397,mRNA processing; GO:0016591,RNA polymerase II, holoenzyme; GO:0031124,mRNA 3'-end processing;	--	NP_196568.2 ENTH/VHS family protein [Arabidopsis thaliana]	56	51	31	40
AT5G10150	no change	0.0570604071569874	-0.528221151160457	AT5G10150	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0009925,basal plasma membrane; GO:0016020,membrane; GO:0031234,extrinsic component of cytoplasmic side of plasma membrane; GO:0042803,protein homodimerization activity; GO:0051258,protein polymerization; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0090708,specification of plant organ axis polarity; GO:1905392,plant organ morphogenesis; GO:2000067,regulation of root morphogenesis;	--	NP_196577.1 UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]	134	135	81	45
AT5G10170	no change	0.125813505512362	-0.1701684064600906	AT5G10170	--	GO:0004512,inositol-3-phosphate synthase activity; GO:0005737,cytoplasm; GO:0006021,inositol biosynthetic process; GO:0006629,lipid metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0009793,embryo development ending in seed dormancy; GO:0016853,isomerase activity;	INO1, ISYNA1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]; K01858;	NP_196579.1 myo-inositol-1-phosphate synthase 3 [Arabidopsis thaliana]	125	106	78	58
AT5G10460	no change	-0.7758627449288482	-0.11143047249955584	AT5G10460	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity;	--	NP_196608.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]	108	67	54	51
AT5G10520	no change	0.7675421090981979	0.43577990081715445	AT5G10520	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006468,protein phosphorylation; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050832,defense response to fungus; GO:0051020,GTPase binding; GO:0071369,cellular response to ethylene stimulus; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity;	--	AAL07235.1 putative Pto kinase interactor [Arabidopsis thaliana]	18	7	13	9
AT5G10540	no change	-0.9549415997075614	0.06856711805121625	AT5G10540	--	GO:0004222,metalloendopeptidase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0006518,peptide metabolic process; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0048046,apoplast;	--	NP_568232.1 Zincin-like metalloproteases family protein [Arabidopsis thaliana]	733	705	554	445
AT5G10610	no change	-0.33225281951254887	-0.596509273674733	AT5G10610	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_196623.1 cytochrome P450, family 81, subfamily K, polypeptide 1 [Arabidopsis thaliana]	33	13	13	7
AT5G10620	no change	0.524556163108245	0.3694056454430811	AT5G10620	--	GO:0003674,molecular_function; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_001318530.1 methyltransferase [Arabidopsis thaliana]	27	17	25	13
AT5G10695	no change	0.6082185858400057	-0.3089061575311732	AT5G10695	--	--	--	NP_568234.1 methionyl-tRNA synthetase [Arabidopsis thaliana]	26	16	6	15
AT5G11060	no change	-0.6208151647699686	0.30958625857003685	AT5G11060	TALE	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009416,response to light stimulus;	--	CAA63131.1 KNAT4 homeobox protein [Arabidopsis thaliana]	110	138	102	101
AT5G11360	no change	0.4138829327915058	0.8189098760678893	AT5G11360	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_196697.2 Interleukin-1 receptor-associated kinase 4 protein [Arabidopsis thaliana]	12	8	7	15
AT5G11550	no change	-0.3251612407566367	0.12336150266770152	AT5G11550	--	--	--	KAG7601939.1 Armadillo-type fold [Arabidopsis thaliana x Arabidopsis arenosa]	105	104	84	67
AT5G11890	no change	-0.3406517519037328	0.2326004934090971	AT5G11890	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_196750.1 harpin-induced protein [Arabidopsis thaliana]	202	117	94	142
AT5G12110	no change	-0.00381906052341412	-0.01351913198772654	AT5G12110	--	GO:0003746,translation elongation factor activity; GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005853,eukaryotic translation elongation factor 1 complex; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009536,plastid; GO:0016020,membrane; GO:0050790,regulation of catalytic activity;	--	NP_196772.1 elongation factor 1-beta 1 [Arabidopsis thaliana]	18	8	11	6
AT5G12120	no change	-0.4982669867327294	-0.03552147325720387	AT5G12120	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0006414,translational elongation;	--	NP_196773.1 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	355	284	219	190
AT5G12360	no change	0.28711598826125023	0.13183946245019318	AT5G12360	--	GO:0005575,cellular_component; GO:0007346,regulation of mitotic cell cycle; GO:0034090,maintenance of meiotic sister chromatid cohesion;	--	NP_001318549.1 hypothetical protein AT5G12360 [Arabidopsis thaliana]	11	6	6	6
AT5G13030	no change	-0.49030795370407665	0.25815767808446366	AT5G13030	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0046872,metal ion binding;	SELENOO, selO; serine/tyrosine/threonine adenylyltransferase [EC:2.7.7.-]; K08997;	NP_196807.2 selenoprotein O [Arabidopsis thaliana]	518	483	474	325
AT5G13180	no change	0.1153087339023685	0.2668127636989717	AT5G13180	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0010089,xylem development; GO:0010150,leaf senescence; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_196822.1 NAC domain containing protein 83 [Arabidopsis thaliana]	98	68	78	54
AT5G13260	no change	0.6029031567758324	0.13827323678504225	AT5G13260	--	GO:0000911,cytokinesis by cell plate formation;	--	NP_196830.2 myosin [Arabidopsis thaliana]	177	153	108	127
AT5G13280	no change	0.03373198729975309	-0.10976728945467595	AT5G13280	--	GO:0000166,nucleotide binding; GO:0004072,aspartate kinase activity; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009088,threonine biosynthetic process; GO:0009089,lysine biosynthetic process via diaminopimelate; GO:0009090,homoserine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	lysC; aspartate kinase [EC:2.7.2.4]; K00928;	NP_196832.1 aspartate kinase 1 [Arabidopsis thaliana]	77	104	66	47
AT5G13290	no change	-0.4216571441504453	0.7637385430950759	AT5G13290	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005102,signaling receptor binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009909,regulation of flower development; GO:0010075,regulation of meristem growth; GO:0010078,maintenance of root meristem identity; GO:0010088,phloem development; GO:0016020,membrane; GO:0033612,receptor serine/threonine kinase binding; GO:0042742,defense response to bacterium; GO:0045595,regulation of cell differentiation;	--	NP_850812.2 Protein kinase superfamily protein [Arabidopsis thaliana]	14	14	20	12
AT5G13510	no change	0.17359218589858605	-0.6914497299475968	AT5G13510	--	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L10, MRPL10, rplJ; large subunit ribosomal protein L10; K02864;	NP_196855.1 Ribosomal protein L10 family protein [Arabidopsis thaliana]	533	421	216	173
AT5G13520	no change	-0.30608444874297613	-0.3541987506761503	AT5G13520	--	GO:0004301,epoxide hydrolase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0016787,hydrolase activity; GO:0019370,leukotriene biosynthetic process; GO:0046872,metal ion binding;	LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]; K01254;	NP_196856.1 peptidase M1 family protein [Arabidopsis thaliana]	239	232	156	92
AT5G13560	no change	0.08024053471476436	-0.15821087765080383	AT5G13560	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009536,plastid;	--	NP_196860.2 structural maintenance of chromosomes protein [Arabidopsis thaliana]	527	459	305	275
AT5G13650	no change	-0.9712290535744976	0.14673975761595937	AT5G13650	--	GO:0000302,response to reactive oxygen species; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0006364,rRNA processing; GO:0006412,translation; GO:0006414,translational elongation; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010468,regulation of gene expression; GO:0031425,chloroplast RNA processing; GO:0050821,protein stabilization; GO:1990904,ribonucleoprotein complex;	typA, bipA; GTP-binding protein; K06207;	NP_568289.3 elongation factor family protein [Arabidopsis thaliana]	984	932	712	679
AT5G13700	no change	-0.44782300185586493	-0.20834170791143924	AT5G13700	--	GO:0005737,cytoplasm; GO:0006598,polyamine catabolic process; GO:0016491,oxidoreductase activity; GO:0046208,spermine catabolic process; GO:0046592,polyamine oxidase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0052894,norspermine:oxygen oxidoreductase activity; GO:0052895,N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity; GO:0052901,spermine:oxygen oxidoreductase (spermidine-forming) activity; GO:0052902,spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity; GO:0052903,N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity; GO:0052904,N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity;	MPAO, PAO1; polyamine oxidase [EC:1.5.3.14 1.5.3.16 1.5.3.-]; K13366;	NP_196874.1 polyamine oxidase 1 [Arabidopsis thaliana]	23	15	9	12
AT5G13720	no change	-0.7917857318045527	-0.3489136896189473	AT5G13720	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane;	--	NP_196876.1 Uncharacterized protein family (UPF0114) [Arabidopsis thaliana]	78	41	35	26
AT5G13780	no change	-0.9547337722046972	0.37118532004094207	AT5G13780	--	GO:0003729,mRNA binding; GO:0004596,peptide alpha-N-acetyltransferase activity; GO:0005829,cytosol; GO:0006474,N-terminal protein amino acid acetylation; GO:0008080,N-acetyltransferase activity; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0031415,NatA complex; GO:1990189,peptide-serine-alpha-N-acetyltransferase activity; GO:1990190,peptide-glutamate-alpha-N-acetyltransferase activity;	--	NP_196882.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	178	163	158	133
AT5G14320	no change	0.1964757594126771	-0.7720342346523905	AT5G14320	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S13, rpsM; small subunit ribosomal protein S13; K02952;	NP_568299.1 Ribosomal protein S13/S18 family [Arabidopsis thaliana]	754	703	320	246
AT5G14430	no change	0.6983789894539378	-0.35020849327307674	AT5G14430	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009505,plant-type cell wall; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_196947.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	279	242	134	133
AT5G14440	no change	-0.26644089774937124	0.7965484115773686	AT5G14440	--	--	--	NP_001031882.1 Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]	62	59	66	71
AT5G14450	no change	0.0688493332402885	0.3955703971911269	AT5G14450	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_196949.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	101	68	57	84
AT5G14460	no change	0.2645979228671951	0.2256619904881972	AT5G14460	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0006396,RNA processing; GO:0006400,tRNA modification; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:1990481,mRNA pseudouridine synthesis;	--	NP_196950.2 Pseudouridine synthase family protein [Arabidopsis thaliana]	88	100	95	54
AT5G14550	no change	-0.7632047272754225	-0.29013947229226283	AT5G14550	--	GO:0000139,Golgi membrane; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_196959.2 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	44	29	32	9
AT5G14570	no change	-0.8957350767419766	-0.06960654677781797	AT5G14570	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0015112,nitrate transmembrane transporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0055085,transmembrane transport; GO:0071249,cellular response to nitrate;	NRT, narK, nrtP, nasA; MFS transporter, NNP family, nitrate/nitrite transporter; K02575;	NP_196961.1 high affinity nitrate transporter 2.7 [Arabidopsis thaliana]	87	78	58	46
AT5G14720	no change	0.5125304876435386	-0.03648442949192131	AT5G14720	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001330554.1 Protein kinase superfamily protein [Arabidopsis thaliana]	182	160	126	95
AT5G14950	no change	-0.12013838907314482	0.2232597763883737	AT5G14950	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0003824,catalytic activity; GO:0004559,alpha-mannosidase activity; GO:0004572,mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006013,mannose metabolic process; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0006491,N-glycan processing; GO:0006517,protein deglycosylation; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0042538,hyperosmotic salinity response; GO:0046872,metal ion binding;	MAN2; alpha-mannosidase II [EC:3.2.1.114]; K01231;	NP_196999.1 golgi alpha-mannosidase II [Arabidopsis thaliana]	383	345	323	241
AT5G15330	no change	0.37521103781988246	0.20821507652868876	AT5G15330	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006950,response to stress; GO:0016036,cellular response to phosphate starvation; GO:0055062,phosphate ion homeostasis; GO:0070417,cellular response to cold;	--	NP_001330175.1 SPX domain-containing protein 4 [Arabidopsis thaliana]	19	16	6	19
AT5G15440	no change	0.29039245135203806	-0.08397706132883179	AT5G15440	--	GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_197048.1 EID1-like 1 [Arabidopsis thaliana]	19	29	20	11
AT5G15450	no change	0.4042382842398259	0.05802910516488231	AT5G15450	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0016887,ATP hydrolysis activity; GO:0034605,cellular response to heat; GO:0042026,protein refolding;	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB; K03695;	NP_568314.1 casein lytic proteinase B3 [Arabidopsis thaliana]	674	582	427	426
AT5G15580	no change	-0.2127702118087777	-0.3849676876870876	AT5G15580	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009826,unidimensional cell growth; GO:0051513,regulation of monopolar cell growth;	--	NP_197062.1 longifolia1 [Arabidopsis thaliana]	194	196	98	98
AT5G15850	no change	-0.6843769645744746	0.31204033712714313	AT5G15850	CO-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009909,regulation of flower development; GO:0042802,identical protein binding; GO:0046872,metal ion binding;	--	NP_197089.1 CONSTANS-like 1 [Arabidopsis thaliana]	20	14	17	11
AT5G16030	no change	0.2901479386819872	0.6978841338022427	AT5G16030	--	--	--	NP_568324.1 mental retardation GTPase activating protein [Arabidopsis thaliana]	68	54	81	51
AT5G16040	no change	-0.4133607697245914	0.3307853036376417	AT5G16040	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0009536,plastid;	--	NP_197108.1 Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]	109	75	75	75
AT5G16150	no change	-0.0036863054882945	-0.3812694757993505	AT5G16150	--	GO:0005351,carbohydrate:proton symporter activity; GO:0008643,carbohydrate transport; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_568328.1 plastidic GLC translocator [Arabidopsis thaliana]	1341	1053	632	570
AT5G16300	no change	0.04944876853659994	-0.10100309485558716	AT5G16300	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0006891,intra-Golgi vesicle-mediated transport; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0017119,Golgi transport complex;	--	NP_197134.1 Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]	381	343	246	200
AT5G16370	no change	-0.9101931993820316	-0.897758598932529	AT5G16370	--	GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_197141.1 acyl activating enzyme 5 [Arabidopsis thaliana]	187	185	71	61
AT5G16780	no change	0.3840701938719761	0.07962225025589813	AT5G16780	--	GO:0000398,mRNA splicing, via spliceosome; GO:0000481,maturation of 5S rRNA; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009908,flower development; GO:0009933,meristem structural organization; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0045292,mRNA cis splicing, via spliceosome; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0048364,root development; GO:0048366,leaf development; GO:0048367,shoot system development; GO:0048528,post-embryonic root development;	SART1, HAF, SNU66; U4/U6.U5 tri-snRNP-associated protein 1; K11984;	NP_001318573.1 SART-1 family [Arabidopsis thaliana]	200	155	143	105
AT5G17290	no change	0.38299118187511705	-0.29241563112467994	AT5G17290	--	GO:0000045,autophagosome assembly; GO:0000422,autophagy of mitochondrion; GO:0005737,cytoplasm; GO:0006501,C-terminal protein lipidation; GO:0006914,autophagy; GO:0006952,defense response; GO:0006995,cellular response to nitrogen starvation; GO:0010150,leaf senescence; GO:0015031,protein transport; GO:0034045,phagophore assembly site membrane; GO:0034274,Atg12-Atg5-Atg16 complex; GO:0042594,response to starvation; GO:0044804,autophagy of nucleus; GO:0050832,defense response to fungus;	ATG5; autophagy-related protein 5; K08339;	NP_197231.1 autophagy protein Apg5 family [Arabidopsis thaliana]	9	17	6	8
AT5G17380	no change	0.19703852334485203	-0.5731243060670125	AT5G17380	--	GO:0000287,magnesium ion binding; GO:0001561,fatty acid alpha-oxidation; GO:0003824,catalytic activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0009536,plastid; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0030976,thiamine pyrophosphate binding; GO:0046872,metal ion binding;	HACL1; 2-hydroxyacyl-CoA lyase 1 [EC:4.1.-.-]; K12261;	NP_197240.1 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [Arabidopsis thaliana]	478	414	220	176
AT5G17540	no change	-0.06010995041923889	-0.6078213829114198	AT5G17540	--	GO:0008150,biological_process; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups;	BEBT, AMAT; benzyl alcohol O-benzoyltransferase [EC:2.3.1.196 2.3.1.232]; K19861;	NP_197256.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	83	32	29	20
AT5G17600	no change	-0.2652482133129646	-0.02790578793149669	AT5G17600	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_197262.1 RING/U-box superfamily protein [Arabidopsis thaliana]	28	30	22	16
AT5G17980	no change	-0.7901596742431795	-0.3596764342566256	AT5G17980	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_197299.1 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]	78	67	38	36
AT5G18110	no change	-0.08026761582342137	0.4943011509918906	AT5G18110	--	GO:0000340,RNA 7-methylguanosine cap binding; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006412,translation; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0009615,response to virus; GO:0016281,eukaryotic translation initiation factor 4F complex;	EIF4E; translation initiation factor 4E; K03259;	NP_197312.1 Putative cap-binding protein [Arabidopsis thaliana]	131	110	135	91
AT5G18240	no change	-0.07980652314815147	-0.3958615569199137	AT5G18240	G2-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010468,regulation of gene expression;	--	NP_850842.1 myb-related protein 1 [Arabidopsis thaliana]	16	14	8	7
AT5G18290	no change	-0.373890438958196	-0.4512637876464179	AT5G18290	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006833,water transport; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_001190329.1 Aquaporin-like superfamily protein [Arabidopsis thaliana]	29	35	16	15
AT5G18470	no change	-0.657743851531776	-0.9451191198451326	AT5G18470	--	GO:0009505,plant-type cell wall; GO:0030246,carbohydrate binding;	--	NP_197348.1 Curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana]	20	27	7	9
AT5G18960	no change	-0.2329630622672874	0.05073569638719929	AT5G18960	FAR1	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_001330829.1 FAR1-related sequence 12 [Arabidopsis thaliana]	177	140	103	110
AT5G18970	no change	-0.03474823835533735	-0.4512510137620602	AT5G18970	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_197398.1 AWPM-19-like family protein [Arabidopsis thaliana]	44	42	25	17
AT5G19000	no change	0.11660241131524648	0.6423274190958872	AT5G19000	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006970,response to osmotic stress; GO:0016567,protein ubiquitination; GO:0042631,cellular response to water deprivation; GO:0042802,identical protein binding; GO:0071472,cellular response to salt stress;	SPOP; speckle-type POZ protein; K10523;	NP_001190334.1 BTB-POZ and MATH domain 1 [Arabidopsis thaliana]	60	67	79	54
AT5G19120	no change	-0.43276603534407454	0.203167181992658	AT5G19120	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0071456,cellular response to hypoxia;	--	NP_197413.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	277	261	222	187
AT5G19140	no change	-0.29209060785344265	-0.3325433363662617	AT5G19140	--	GO:0005886,plasma membrane; GO:0009536,plastid;	--	NP_001031900.1 aluminum induced protein with YGL and LRDR motifs [Arabidopsis thaliana]	932	943	573	420
AT5G19150	no change	0.4174147729824232	0.4102696472763093	AT5G19150	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006734,NADH metabolic process; GO:0006739,NADP metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0046496,nicotinamide nucleotide metabolic process; GO:0047453,ATP-dependent NAD(P)H-hydrate dehydratase activity; GO:0110051,metabolite repair;	CARKD; ATP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.93]; K17757;	NP_568369.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	45	37	46	27
AT5G19220	no change	-0.2177731546623647	-0.3560635914249691	AT5G19220	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0005524,ATP binding; GO:0005978,glycogen biosynthetic process; GO:0008152,metabolic process; GO:0008878,glucose-1-phosphate adenylyltransferase activity; GO:0009058,biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019252,starch biosynthetic process;	glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]; K00975;	NP_197423.1 ADP glucose pyrophosphorylase large subunit 1 [Arabidopsis thaliana]	386	323	206	160
AT5G19290	no change	-0.21312756942803632	-0.07290371811197327	AT5G19290	--	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0016298,lipase activity; GO:0047372,acylglycerol lipase activity;	--	NP_197430.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	548	537	396	291
AT5G19360	no change	0.958070898985353	-0.27796488825784094	AT5G19360	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0080092,regulation of pollen tube growth; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_197437.1 calcium-dependent protein kinase 34 [Arabidopsis thaliana]	11	19	11	6
AT5G19500	no change	0.9100767179357644	-0.92563342748845	AT5G19500	--	GO:0003333,amino acid transmembrane transport; GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009706,chloroplast inner membrane; GO:0016020,membrane;	--	NP_197451.2 Tryptophan/tyrosine permease [Arabidopsis thaliana]	55	41	23	11
AT5G19750	no change	0.3204682776127262	0.35243781233716703	AT5G19750	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane;	MPV17; protein Mpv17; K13348;	NP_197476.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]	46	52	50	34
AT5G19760	no change	-0.0868928327489206	-0.8779711841917445	AT5G19760	--	GO:0000325,plant-type vacuole; GO:0005310,dicarboxylic acid transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006835,dicarboxylic acid transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015142,tricarboxylic acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035674,tricarboxylic acid transmembrane transport; GO:0055085,transmembrane transport;	--	NP_197477.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	898	827	382	246
AT5G19940	no change	-0.9986146127530444	-0.6121364226609307	AT5G19940	--	GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule;	--	NP_197494.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]	294	320	147	120
AT5G19950	no change	-0.07085703426429309	0.2988051117092226	AT5G19950	--	GO:0005634,nucleus; GO:0005739,mitochondrion;	--	NP_568387.1 tudor domain protein (DUF1767) [Arabidopsis thaliana]	82	72	74	52
AT5G20020	no change	-0.28478860399917166	0.8661821995276809	AT5G20020	--	GO:0000054,ribosomal subunit export from nucleus; GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0009536,plastid; GO:0015031,protein transport;	RAN; GTP-binding nuclear protein Ran; K07936;	NP_197502.1 RAS-related GTP-binding nuclear protein 2 [Arabidopsis thaliana]	333	305	431	339
AT5G20140	no change	0.4122151016162275	0.5967764911121078	AT5G20140	--	GO:0005515,protein binding; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0020037,heme binding; GO:0110165,cellular anatomical entity;	--	NP_197514.2 SOUL heme-binding family protein [Arabidopsis thaliana]	60	41	60	41
AT5G20250	no change	0.0914240748420772	0.3179636133407573	AT5G20250	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006979,response to oxidative stress; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0047274,galactinol-sucrose galactosyltransferase activity; GO:0071456,cellular response to hypoxia;	E2.4.1.82; raffinose synthase [EC:2.4.1.82]; K06617;	NP_001031910.1 Raffinose synthase family protein [Arabidopsis thaliana]	1285	1280	1227	904
AT5G20350	no change	0.27715667945483247	-0.4595058138789888	AT5G20350	--	GO:0000035,acyl binding; GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0009932,cell tip growth; GO:0016020,membrane; GO:0016409,palmitoyltransferase activity; GO:0016417,S-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0018345,protein palmitoylation; GO:0019706,protein-cysteine S-palmitoyltransferase activity; GO:0030659,cytoplasmic vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:2000652,regulation of secondary cell wall biogenesis; GO:2001006,regulation of cellulose biosynthetic process;	--	NP_197535.2 Ankyrin repeat family protein with DHHC zinc finger domain-containing protein [Arabidopsis thaliana]	210	250	139	87
AT5G20510	no change	0.21799655947309596	0.8851241185465862	AT5G20510	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003712,transcription coregulator activity; GO:0003714,transcription corepressor activity; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_197551.2 alfin-like 5 [Arabidopsis thaliana]	15	12	19	14
AT5G20590	no change	-0.4135881079507099	-0.3578004414197949	AT5G20590	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	--	NP_197559.1 TRICHOME BIREFRINGENCE-LIKE 5 [Arabidopsis thaliana]	28	22	16	10
AT5G20635	no change	-0.599049653532979	0.3452684242613361	AT5G20635	--	GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009737,response to abscisic acid;	--	NP_680175.2 guanine nucleotide-binding protein subunit gamma [Arabidopsis thaliana]	15	15	23	4
AT5G20720	no change	0.5437276949184221	-0.3862012135820758	AT5G20720	--	GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0009941,chloroplast envelope; GO:0046872,metal ion binding; GO:0046914,transition metal ion binding; GO:0048046,apoplast; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding; GO:0051290,protein heterotetramerization; GO:0140662,ATP-dependent protein folding chaperone; GO:1901671,positive regulation of superoxide dismutase activity;	--	NP_001318614.1 chaperonin 20 [Arabidopsis thaliana]	1228	1138	675	525
AT5G20730	no change	0.8007143393114676	0.07868417091517299	AT5G20730	ARF	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009630,gravitropism; GO:0009638,phototropism; GO:0009723,response to ethylene; GO:0009725,response to hormone; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009785,blue light signaling pathway; GO:0010311,lateral root formation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048366,leaf development; GO:0048527,lateral root development; GO:1990110,callus formation;	K14486, ARF; auxin response factor; K14486;	NP_851047.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein [Arabidopsis thaliana]	172	130	102	105
AT5G20910	no change	0.36928296850643344	0.20926751150658263	AT5G20910	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_197591.1 RING/U-box superfamily protein [Arabidopsis thaliana]	67	59	73	27
AT5G20940	no change	-0.6119061202304525	-0.2826396801377993	AT5G20940	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009251,glucan catabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	bglX; beta-glucosidase [EC:3.2.1.21]; K05349;	NP_197594.2 Glycosyl hydrolase family protein [Arabidopsis thaliana]	82	73	40	43
AT5G20970	no change	0.1562358174836063	-0.06912032415541032	AT5G20970	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	HSP20; HSP20 family protein; K13993;	NP_197597.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]	21	20	15	11
AT5G20980	no change	0.6262954172610592	-0.3143690802739483	AT5G20980	--	GO:0003871,5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity; GO:0008168,methyltransferase activity; GO:0008172,S-methyltransferase activity; GO:0008270,zinc ion binding; GO:0008652,cellular amino acid biosynthetic process; GO:0008705,methionine synthase activity; GO:0009086,methionine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0032259,methylation; GO:0046872,metal ion binding;	metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]; K00549;	NP_001078611.1 methionine synthase 3 [Arabidopsis thaliana]	120	108	77	46
AT5G21100	no change	-0.22886263463366305	0.02363407768530967	AT5G21100	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0006952,defense response; GO:0006979,response to oxidative stress; GO:0008447,L-ascorbate oxidase activity; GO:0009536,plastid; GO:0009615,response to virus; GO:0009651,response to salt stress; GO:0016491,oxidoreductase activity; GO:0019854,L-ascorbic acid catabolic process; GO:0042542,response to hydrogen peroxide; GO:0046872,metal ion binding; GO:0050687,negative regulation of defense response to virus; GO:1901001,negative regulation of response to salt stress;	E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3]; K00423;	NP_197609.1 Plant L-ascorbate oxidase [Arabidopsis thaliana]	332	331	248	199
AT5G21105	no change	0.573277107374968	-0.02606199868146873	AT5G21105	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0008447,L-ascorbate oxidase activity; GO:0009506,plasmodesma; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3]; K00423;	NP_680176.5 Plant L-ascorbate oxidase [Arabidopsis thaliana]	310	298	227	170
AT5G21950	no change	0.870648861891705	-0.6777449895896075	AT5G21950	--	GO:0003674,molecular_function;	--	NP_680183.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	61	40	21	20
AT5G22010	no change	0.4113470153822619	0.10645914668201992	AT5G22010	--	GO:0000003,reproduction; GO:0000166,nucleotide binding; GO:0000712,resolution of meiotic recombination intermediates; GO:0003677,DNA binding; GO:0003689,DNA clamp loader activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005663,DNA replication factor C complex; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0016887,ATP hydrolysis activity; GO:0051321,meiotic cell cycle; GO:0051570,regulation of histone H3-K9 methylation;	RFC1; replication factor C subunit 1; K10754;	NP_680188.1 replication factor C1 [Arabidopsis thaliana]	146	157	142	79
AT5G22050	no change	0.04775311409699284	0.2824534356048293	AT5G22050	--	GO:0004672,protein kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_680192.2 Protein kinase superfamily protein [Arabidopsis thaliana]	79	75	74	51
AT5G22080	no change	-0.2822753451260285	0.06138442091799949	AT5G22080	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001190359.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	208	190	170	108
AT5G22090	no change	-0.02236825365111047	-0.5244323335771258	AT5G22090	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010922,positive regulation of phosphatase activity; GO:0019902,phosphatase binding; GO:0042326,negative regulation of phosphorylation; GO:0047485,protein N-terminus binding;	--	NP_001190360.1 FAF-like protein (DUF3049) [Arabidopsis thaliana]	337	259	159	115
AT5G22300	no change	0.9975801872243696	-0.8053462599841499	AT5G22300	--	GO:0000257,nitrilase activity; GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0018822,nitrile hydratase activity; GO:0019499,cyanide metabolic process; GO:0047427,cyanoalanine nitrilase activity; GO:0047558,3-cyanoalanine hydratase activity; GO:0051410,detoxification of nitrogen compound; GO:0080061,indole-3-acetonitrile nitrilase activity;	NIT4; beta-cyano-L-alanine hydratase/nitrilase [EC:3.5.5.4 4.2.1.65]; K13035;	NP_001330785.1 nitrilase 4 [Arabidopsis thaliana]	74	79	15	40
AT5G22630	no change	-0.16270375813056256	-0.752459406525015	AT5G22630	--	GO:0004664,prephenate dehydratase activity; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009094,L-phenylalanine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0047769,arogenate dehydratase activity;	ADT, PDT; arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51]; K05359;	NP_197655.1 arogenate dehydratase 5 [Arabidopsis thaliana]	219	155	77	68
AT5G22830	no change	0.5440596783756763	-0.40986210190935585	AT5G22830	--	GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010117,photoprotection; GO:0010960,magnesium ion homeostasis; GO:0015095,magnesium ion transmembrane transporter activity; GO:0015693,magnesium ion transport; GO:0016020,membrane; GO:0030001,metal ion transport; GO:0031969,chloroplast membrane; GO:0046873,metal ion transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1903830,magnesium ion transmembrane transport;	--	NP_001332159.1 magnesium (Mg) transporter 10 [Arabidopsis thaliana]	282	221	148	103
AT5G22840	no change	-0.34716448284305373	0.1963321133570076	AT5G22840	--	GO:0000166,nucleotide binding; GO:0000245,spliceosomal complex assembly; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0050684,regulation of mRNA processing;	--	NP_197675.1 Protein kinase superfamily protein [Arabidopsis thaliana]	47	47	48	25
AT5G22880	no change	-0.4587616986753386	-0.3793646170522661	AT5G22880	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0009536,plastid; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2B; histone H2B; K11252;	NP_197679.1 histone B2 [Arabidopsis thaliana]	357	366	210	160
AT5G23060	no change	0.5498475610072648	-0.7368555320587941	AT5G23060	--	GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009704,de-etiolation; GO:0016020,membrane; GO:0071277,cellular response to calcium ion; GO:0090333,regulation of stomatal closure;	--	NP_197697.1 calcium sensing receptor [Arabidopsis thaliana]	488	472	235	151
AT5G23230	no change	-0.4325419949665555	0.370271095939438	AT5G23230	--	GO:0005575,cellular_component; GO:0008936,nicotinamidase activity; GO:0016787,hydrolase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0019674,NAD metabolic process;	--	NP_197714.1 nicotinamidase 2 [Arabidopsis thaliana]	25	11	16	14
AT5G23240	no change	-0.6282774292310805	0.6222149352896401	AT5G23240	--	GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_197715.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	182	128	168	144
AT5G23300	no change	0.2590884740620629	0.09574315826423783	AT5G23300	--	GO:0004152,dihydroorotate dehydrogenase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006207,'de novo' pyrimidine nucleobase biosynthetic process; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0009220,pyrimidine ribonucleotide biosynthetic process; GO:0009536,plastid; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016627,oxidoreductase activity, acting on the CH-CH group of donors; GO:0044205,'de novo' UMP biosynthetic process;	DHODH, pyrD; dihydroorotate dehydrogenase [EC:1.3.5.2]; K00254;	NP_568428.1 pyrimidine d [Arabidopsis thaliana]	176	190	165	99
AT5G23520	no change	0.37737679906703686	0.14261896886367398	AT5G23520	--	GO:0003674,molecular_function; GO:0005737,cytoplasm;	--	NP_001330345.1 smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]	15	15	7	14
AT5G23575	no change	0.251493657773527	0.1841870780213223	AT5G23575	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_680213.1 Transmembrane CLPTM1 family protein [Arabidopsis thaliana]	891	811	685	589
AT5G23680	no change	-0.5423912799471345	-0.30102555911444984	AT5G23680	--	GO:0005515,protein binding;	--	NP_197757.1 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	20	17	12	8
AT5G23940	no change	-0.2531758697160622	-0.44532687856660624	AT5G23940	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0010090,trichome morphogenesis; GO:0010143,cutin biosynthetic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0051179,localization; GO:0090626,plant epidermis morphogenesis;	DCR; BAHD acyltransferase [EC:2.3.1.-]; K19747;	NP_197782.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	3132	3103	1743	1306
AT5G24316	no change	-0.19993656928338577	0.5594934564900197	AT5G24316	--	--	--	NP_568443.1 proline-rich family protein [Arabidopsis thaliana]	8	9	11	6
AT5G24318	no change	-0.33753568517775145	-0.32530358304717866	AT5G24318	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_001031936.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	17	24	7	14
AT5G24430	no change	0.4889704540968276	0.4953084401307589	AT5G24430	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	--	NP_197831.3 Calcium-dependent protein kinase (CDPK) family protein [Arabidopsis thaliana]	94	78	84	75
AT5G24490	no change	-0.2933974746216307	-0.7038622483000901	AT5G24490	--	GO:0003729,mRNA binding; GO:0005840,ribosome; GO:0006417,regulation of translation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0022627,cytosolic small ribosomal subunit; GO:0043022,ribosome binding; GO:0043024,ribosomal small subunit binding; GO:0044238,primary metabolic process; GO:0045900,negative regulation of translational elongation;	--	NP_568447.1 30S ribosomal protein [Arabidopsis thaliana]	516	534	253	178
AT5G24500	no change	-0.3223060125836521	0.5037564314946328	AT5G24500	--	GO:0008150,biological_process;	--	NP_197838.2 fantom protein [Arabidopsis thaliana]	22	18	24	14
AT5G24810	no change	-0.7016014267984179	-0.2311495887944824	AT5G24810	--	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus;	--	NP_568458.1 ABC1 family protein [Arabidopsis thaliana]	214	239	143	114
AT5G24890	no change	0.3516872047591075	0.3563676618805627	AT5G24890	--	GO:0005634,nucleus; GO:0006979,response to oxidative stress; GO:0008150,biological_process; GO:0045893,positive regulation of DNA-templated transcription; GO:0046686,response to cadmium ion;	--	CAA0404670.1 unnamed protein product [Arabidopsis thaliana]	63	49	61	35
AT5G24940	no change	-0.5080673226091069	0.46537937920178274	AT5G24940	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_197876.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	19	16	13	18
AT5G24990	no change	0.7365206853637504	-0.5512636621189031	AT5G24990	--	GO:0003674,molecular_function;	--	NP_197881.1 enhanced disease resistance-like protein (DUF1336) [Arabidopsis thaliana]	16	17	14	2
AT5G25060	no change	0.707144384923677	0.2779818200013617	AT5G25060	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck;	SR140; U2-associated protein SR140; K12842;	NP_568464.1 RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	201	232	190	159
AT5G25265	no change	0.6305092750728588	0.3741628004101709	AT5G25265	--	GO:0000325,plant-type vacuole; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005801,cis-Golgi network; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0102562,hydroxyproline O-arbinofuranose transferase activity; GO:1990585,hydroxyproline O-arabinosyltransferase activity;	HPAT; hydroxyproline O-arabinosyltransferase [EC:2.4.2.58]; K20782;	NP_680219.1 Hyp O-arabinosyltransferase-like protein [Arabidopsis thaliana]	173	129	157	103
AT5G25470	no change	0.25929962040288457	0.11287211377479033	AT5G25470	B3	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_001318648.1 AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]	16	5	5	9
AT5G25610	no change	-0.7596958305844208	0.11323649851850044	AT5G25610	--	GO:0003729,mRNA binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0009651,response to salt stress;	--	NP_197943.1 BURP domain-containing protein [Arabidopsis thaliana]	4196	4278	3488	2621
AT5G25630	no change	0.728960957217088	-0.23337722992923707	AT5G25630	--	GO:0005515,protein binding;	--	NP_001190400.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	122	149	86	68
AT5G25754	no change	-0.539488349329722	-0.18004528319897994	AT5G25754	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003674,molecular_function; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex;	--	NP_680222.1 RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana]	34	22	16	16
AT5G25760	no change	-0.28655899740959895	0.965252234495006	AT5G25760	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0006635,fatty acid beta-oxidation; GO:0007031,peroxisome organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016558,protein import into peroxisome matrix; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061631,ubiquitin conjugating enzyme activity;	--	NP_001031939.1 peroxin4 [Arabidopsis thaliana]	213	210	366	194
AT5G25770	no change	0.02551933371995161	0.734419079851529	AT5G25770	--	GO:0003674,molecular_function;	--	NP_974835.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	57	43	69	42
AT5G25980	no change	0.7075672634654772	0.3524790458795964	AT5G25980	--	GO:0000325,plant-type vacuole; GO:0002213,defense response to insect; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle; GO:0102799,glucosinolate glucohydrolase activity;	E3.2.1.147; myrosinase [EC:3.2.1.147]; K01237;	NP_568479.1 glucoside glucohydrolase 2 [Arabidopsis thaliana]	10018	9217	9317	6995
AT5G26000	no change	-0.1939891560216978	0.7132903542743126	AT5G26000	--	GO:0000325,plant-type vacuole; GO:0002213,defense response to insect; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005773,vacuole; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009625,response to insect; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0099503,secretory vesicle; GO:0102483,scopolin beta-glucosidase activity; GO:0102799,glucosinolate glucohydrolase activity;	E3.2.1.147; myrosinase [EC:3.2.1.147]; K01237;	NP_851077.1 thioglucoside glucohydrolase 1 [Arabidopsis thaliana]	13183	12233	15577	12058
AT5G26340	no change	0.7765979407118216	-0.14511569979301658	AT5G26340	--	GO:0005358,high-affinity glucose:proton symporter activity; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0008645,hexose transmembrane transport; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0009679,hexose:proton symporter activity; GO:0009737,response to abscisic acid; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1904659,glucose transmembrane transport;	--	NP_198006.1 Major facilitator superfamily protein [Arabidopsis thaliana]	272	248	214	105
AT5G26960	no change	-0.7828104812753109	-0.1631468271627976	AT5G26960	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_198048.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	95	85	63	44
AT5G26990	no change	-0.5333122070058084	-0.4461441217741056	AT5G26990	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_198051.1 Drought-responsive family protein [Arabidopsis thaliana]	36	31	21	12
AT5G27270	no change	-0.1659729326006897	-0.3379937589240766	AT5G27270	--	GO:0000373,Group II intron splicing; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009570,chloroplast stroma; GO:0010239,chloroplast mRNA processing;	--	NP_001331484.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	99	62	34	47
AT5G27330	no change	0.00157524700183707	0.3771737197643131	AT5G27330	--	GO:0000137,Golgi cis cisterna; GO:0003735,structural constituent of ribosome; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0016020,membrane;	--	NP_198085.1 Prefoldin chaperone subunit family protein [Arabidopsis thaliana]	98	127	122	76
AT5G27450	no change	0.09222953225149114	-0.1811962649841262	AT5G27450	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0004496,mevalonate kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0008299,isoprenoid biosynthetic process; GO:0016126,sterol biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019287,isopentenyl diphosphate biosynthetic process, mevalonate pathway; GO:0046872,metal ion binding;	E2.7.1.36, MVK, mvaK1; mevalonate kinase [EC:2.7.1.36]; K00869;	NP_001190411.1 mevalonate kinase [Arabidopsis thaliana]	236	176	128	110
AT5G27640	no change	0.7490349910062347	0.2534798115502072	AT5G27640	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0009536,plastid; GO:0016282,eukaryotic 43S preinitiation complex; GO:0031369,translation initiation factor binding; GO:0033290,eukaryotic 48S preinitiation complex;	EIF3B; translation initiation factor 3 subunit B; K03253;	NP_001330567.1 translation initiation factor 3B1 [Arabidopsis thaliana]	744	665	541	554
AT5G27680	no change	-0.4728287605607128	0.8252627485054623	AT5G27680	--	GO:0000166,nucleotide binding; GO:0000724,double-strand break repair via homologous recombination; GO:0003676,nucleic acid binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0006268,DNA unwinding involved in DNA replication; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0009378,four-way junction helicase activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0032508,DNA duplex unwinding; GO:0043138,3'-5' DNA helicase activity; GO:0046872,metal ion binding;	--	NP_001330792.1 RECQ helicase SIM [Arabidopsis thaliana]	20	17	33	12
AT5G27850	no change	-0.2680718811757558	0.34936146361387865	AT5G27850	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L18e, RPL18; large subunit ribosomal protein L18e; K02883;	NP_198137.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]	2431	2374	2334	1741
AT5G27950	no change	-0.7641373374764413	-0.36106403354578015	AT5G27950	--	GO:0000166,nucleotide binding; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0008574,plus-end-directed microtubule motor activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0030705,cytoskeleton-dependent intracellular transport;	--	NP_001332499.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	32	25	15	14
AT5G28060	no change	0.8657959489062633	0.6353493110964886	AT5G28060	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S24e, RPS24; small subunit ribosomal protein S24e; K02974;	NP_198158.1 Ribosomal protein S24e family protein [Arabidopsis thaliana]	675	565	713	559
AT5G28540	no change	-0.9967471506230297	-0.49070887066316704	AT5G28540	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005794,Golgi apparatus; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0016020,membrane; GO:0016592,mediator complex; GO:0016887,ATP hydrolysis activity; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0034663,endoplasmic reticulum chaperone complex; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone;	HSPA5, BIP; endoplasmic reticulum chaperone BiP [EC:3.6.4.10]; K09490;	NP_198206.1 heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]	1974	1712	991	747
AT5G28919	no change	0.7851454879056117	-0.2313058299588064	AT5G28919	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001119297.1 hypothetical protein AT5G28919 [Arabidopsis thaliana]	17	17	15	5
AT5G34940	no change	-0.7349066859262295	-0.26283056478585803	AT5G34940	--	GO:0004566,beta-glucuronidase activity; GO:0005576,extracellular region; GO:0005764,lysosome; GO:0005765,lysosomal membrane; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	HPSE; heparanase [EC:3.2.1.166]; K07964;	NP_851093.1 glucuronidase 3 [Arabidopsis thaliana]	105	141	64	71
AT5G35370	no change	-0.05258169152124623	0.7092877110761165	AT5G35370	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0031625,ubiquitin protein ligase binding; GO:0106310,protein serine kinase activity;	--	NP_198387.2 S-locus lectin protein kinase family protein [Arabidopsis thaliana]	8	5	3	10
AT5G35630	no change	-0.8466100743699745	-0.19677500319864755	AT5G35630	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004356,glutamate-ammonia ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006542,glutamine biosynthetic process; GO:0006807,nitrogen compound metabolic process; GO:0007568,aging; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0019676,ammonia assimilation cycle; GO:0022626,cytosolic ribosome; GO:0043436,oxoacid metabolic process; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:1901149,salicylic acid binding;	glnA, GLUL; glutamine synthetase [EC:6.3.1.2]; K01915;	NP_001031969.1 glutamine synthetase 2 [Arabidopsis thaliana]	3721	3398	2127	1949
AT5G35670	no change	0.9283252490099106	0.31813904157444567	AT5G35670	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_568529.1 IQ-domain 33 [Arabidopsis thaliana]	43	37	32	33
AT5G35735	no change	-0.18594164846104497	0.34761874917035857	AT5G35735	--	GO:0016020,membrane; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_568531.1 Auxin-responsive family protein [Arabidopsis thaliana]	46	40	44	29
AT5G36220	no change	-0.1548094883602456	-0.3292322887006554	AT5G36220	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_568533.2 cytochrome p450 81d1 [Arabidopsis thaliana]	35	14	13	12
AT5G37890	no change	0.8295179024284828	-0.0726303895174576	AT5G37890	--	GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0007275,multicellular organism development; GO:0008270,zinc ion binding; GO:0009411,response to UV; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	SIAH1; E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]; K04506;	NP_198605.2 Protein with RING/U-box and TRAF-like domain [Arabidopsis thaliana]	72	64	61	27
AT5G38210	no change	0.19065134484607535	-0.3785372863247254	AT5G38210	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity;	--	NP_198637.2 Protein kinase family protein [Arabidopsis thaliana]	73	46	34	26
AT5G38630	no change	0.4477866241973581	0.33292378091796726	AT5G38630	--	GO:0000293,ferric-chelate reductase activity; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019852,L-ascorbic acid metabolic process; GO:0046872,metal ion binding; GO:0055085,transmembrane transport; GO:0140571,transmembrane ascorbate ferrireductase activity;	--	NP_198679.1 cytochrome B561-1 [Arabidopsis thaliana]	227	172	186	145
AT5G39050	no change	0.05792196056791481	-0.10447289418559676	AT5G39050	--	GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0047165,flavonol-3-O-beta-glucoside O-malonyltransferase activity; GO:0050736,O-malonyltransferase activity;	--	NP_568561.4 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	150	125	106	65
AT5G39520	no change	0.23988206296747508	-0.13002955005270048	AT5G39520	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0010150,leaf senescence;	--	NP_198768.1 hypothetical protein (DUF1997) [Arabidopsis thaliana]	74	54	49	29
AT5G39570	no change	-0.2157285476388663	-0.7681142951781953	AT5G39570	--	GO:0016020,membrane;	--	NP_001318706.1 transmembrane protein [Arabidopsis thaliana]	1918	1686	765	631
AT5G39590	no change	0.2810947735028851	-0.02586892468761459	AT5G39590	--	GO:0009536,plastid;	--	NP_198775.1 TLD-domain containing nucleolar protein [Arabidopsis thaliana]	169	173	150	78
AT5G39600	no change	0.8856097889373128	0.05446459175192482	AT5G39600	--	GO:0005739,mitochondrion; GO:0005762,mitochondrial large ribosomal subunit; GO:0005840,ribosome; GO:0008150,biological_process; GO:1990904,ribonucleoprotein complex;	--	NP_001318707.1 39S ribosomal protein [Arabidopsis thaliana]	89	55	61	38
AT5G40150	no change	-0.7900807955780239	-0.06573547855665016	AT5G40150	--	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0006979,response to oxidative stress; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity;	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430;	NP_198831.1 Peroxidase superfamily protein [Arabidopsis thaliana]	103	100	63	64
AT5G40155	no change	0.49360742546893127	-0.13565294691833366	AT5G40155	--	GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus;	--	NP_568576.2 Defensin-like (DEFL) family protein [Arabidopsis thaliana]	12	17	6	11
AT5G40340	no change	-0.7720845799011782	0.1632183441319087	AT5G40340	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription; GO:0009506,plasmodesma; GO:0009908,flower development; GO:0035098,ESC/E(Z) complex; GO:0098532,histone H3-K27 trimethylation; GO:2000028,regulation of photoperiodism, flowering;	--	NP_001331897.1 Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]	204	204	204	106
AT5G40660	no change	0.556005067978702	0.3490804912972697	AT5G40660	--	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0033615,mitochondrial proton-transporting ATP synthase complex assembly; GO:0043461,proton-transporting ATP synthase complex assembly;	--	NP_198882.1 ATP12 protein-like protein [Arabidopsis thaliana]	117	109	103	87
AT5G40950	no change	-0.5377857376724539	0.1924365491547615	AT5G40950	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:1990904,ribonucleoprotein complex;	RP-L27, MRPL27, rpmA; large subunit ribosomal protein L27; K02899;	NP_198911.1 ribosomal protein large subunit 27 [Arabidopsis thaliana]	2727	1938	2050	1469
AT5G40970	no change	0.6677380958558045	0.09163181384384549	AT5G40970	--	--	--	NP_001318719.1 hypothetical protein (DUF 3339) [Arabidopsis thaliana]	14	12	14	5
AT5G41020	no change	-0.2243909093075893	0.07413176297124344	AT5G41020	MYB_related	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_198918.1 myb family transcription factor [Arabidopsis thaliana]	39	49	35	27
AT5G41070	no change	-0.8208268867852375	0.37095127372768943	AT5G41070	--	GO:0003723,RNA binding; GO:0003725,double-stranded RNA binding; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_198923.2 dsRNA-binding protein 5 [Arabidopsis thaliana]	27	29	26	22
AT5G41110	no change	-0.7016067706469146	-0.2459181462486995	AT5G41110	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001332177.1 meiosis chromosome segregation family protein [Arabidopsis thaliana]	31	23	17	13
AT5G41610	no change	-0.5434847678873148	-0.21252618147730412	AT5G41610	--	GO:0005770,late endosome; GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006885,regulation of pH; GO:0012505,endomembrane system; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_001332436.1 cation/H+ exchanger 18 [Arabidopsis thaliana]	41	22	23	13
AT5G41810	no change	0.5696813586293946	-0.21368999009518563	AT5G41810	--	--	--	NP_568598.3 Avr9/Cf-9 rapidly elicited protein [Arabidopsis thaliana]	50	67	40	28
AT5G41920	no change	-0.07487540336042191	0.24239003447182456	AT5G41920	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0001714,endodermal cell fate specification; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding; GO:0048366,leaf development; GO:0090610,bundle sheath cell fate specification;	--	NP_199007.1 GRAS family transcription factor [Arabidopsis thaliana]	23	26	13	24
AT5G42020	no change	0.4113153275776442	-0.5976431478576928	AT5G42020	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016020,membrane; GO:0016592,mediator complex; GO:0016887,ATP hydrolysis activity; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0034663,endoplasmic reticulum chaperone complex; GO:0034976,response to endoplasmic reticulum stress; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone;	HSPA5, BIP; endoplasmic reticulum chaperone BiP [EC:3.6.4.10]; K09490;	NP_851119.1 Heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]	1084	919	550	336
AT5G42050	no change	-0.5647819049687447	0.41505147363173744	AT5G42050	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0010941,regulation of cell death; GO:0034976,response to endoplasmic reticulum stress; GO:0071456,cellular response to hypoxia; GO:1902074,response to salt; GO:1904350,regulation of protein catabolic process in the vacuole;	--	NP_568600.1 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]	676	611	647	491
AT5G42090	no change	-0.01582531855056228	-0.07341523757893104	AT5G42090	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_199024.1 Lung seven transmembrane receptor family protein [Arabidopsis thaliana]	1032	895	624	576
AT5G42240	no change	-0.23413284505755652	-0.3805315758778495	AT5G42240	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_199039.1 serine carboxypeptidase-like 42 [Arabidopsis thaliana]	368	461	274	159
AT5G42280	no change	0.02114414288732818	-0.82896590791278	AT5G42280	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001330864.1 Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]	41	36	18	11
AT5G42310	no change	-0.47979889309070534	0.49154074386856633	AT5G42310	--	GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0010239,chloroplast mRNA processing; GO:0042644,chloroplast nucleoid; GO:0042651,thylakoid membrane;	--	NP_199046.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	78	59	72	55
AT5G42320	no change	-0.9062163735186	0.826147411180311	AT5G42320	--	GO:0004181,metallocarboxypeptidase activity; GO:0006508,proteolysis; GO:0008270,zinc ion binding; GO:0016020,membrane;	--	NP_199047.2 Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]	21	27	17	37
AT5G42490	no change	0.7071155702075071	0.22015493544908152	AT5G42490	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding;	--	NP_001332452.1 ATP binding microtubule motor family protein [Arabidopsis thaliana]	15	4	7	7
AT5G42820	no change	-0.3271172385572944	0.09730975608351618	AT5G42820	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0030628,pre-mRNA 3'-splice site binding; GO:0046872,metal ion binding; GO:0048573,photoperiodism, flowering; GO:0089701,U2AF complex;	U2AF1; splicing factor U2AF 35 kDa subunit; K12836;	NP_199096.1 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]	174	130	146	73
AT5G42980	no change	0.376477012024305	-0.3370827401591706	AT5G42980	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010188,response to microbial phytotoxin; GO:0010286,heat acclimation; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0050832,defense response to fungus; GO:0051259,protein complex oligomerization;	trxA; thioredoxin 1; K03671;	NP_199112.1 thioredoxin 3 [Arabidopsis thaliana]	915	844	551	378
AT5G43170	no change	0.24521826746534656	0.7323442965090664	AT5G43170	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009409,response to cold; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_199131.1 zinc-finger protein 3 [Arabidopsis thaliana]	9	3	8	5
AT5G43190	no change	-0.2173328574983461	0.4272026754096594	AT5G43190	--	GO:0005515,protein binding;	--	NP_568622.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	12	16	13	12
AT5G43430	no change	-0.05815508072815623	0.1354223386748259	AT5G43430	--	GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006552,leucine catabolic process; GO:0009055,electron transfer activity; GO:0009536,plastid; GO:0015996,chlorophyll catabolic process; GO:0022900,electron transport chain;	fixA, etfB; electron transfer flavoprotein beta subunit; K03521;	NP_001332757.1 electron transfer flavoprotein beta [Arabidopsis thaliana]	418	429	355	265
AT5G43745	no change	0.0339016784442543	0.10326448962316248	AT5G43745	--	GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0042170,plastid membrane;	--	NP_568628.1 ion channel POLLUX-like protein, putative (DUF1012) [Arabidopsis thaliana]	86	101	59	72
AT5G43760	no change	0.10123031995390729	-0.07578674665104985	AT5G43760	--	GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009922,fatty acid elongase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_199189.1 3-ketoacyl-CoA synthase 20 [Arabidopsis thaliana]	1464	1379	981	803
AT5G43870	no change	0.4918042539157781	0.0609270497674322	AT5G43870	--	GO:0005802,trans-Golgi network; GO:0006892,post-Golgi vesicle-mediated transport; GO:0009734,auxin-activated signaling pathway; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation;	--	NP_199200.1 auxin canalization protein (DUF828) [Arabidopsis thaliana]	147	124	122	68
AT5G44020	no change	-0.8973430895412591	-0.2466521543521644	AT5G44020	--	GO:0000325,plant-type vacuole; GO:0003993,acid phosphatase activity; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0045735,nutrient reservoir activity;	--	NP_199215.1 HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	95	92	61	44
AT5G44030	no change	-0.6664247490753982	-0.413529892602199	AT5G44030	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009833,plant-type primary cell wall biogenesis; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016759,cellulose synthase activity; GO:0016760,cellulose synthase (UDP-forming) activity; GO:0030244,cellulose biosynthetic process; GO:0042742,defense response to bacterium; GO:0042802,identical protein binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0071555,cell wall organization;	--	NP_199216.2 cellulose synthase A4 [Arabidopsis thaliana]	192	173	105	77
AT5G44780	no change	-0.10240712965336791	0.01986681570034938	AT5G44780	--	GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0009536,plastid; GO:0016554,cytidine to uridine editing; GO:0043170,macromolecule metabolic process; GO:0046983,protein dimerization activity; GO:0080156,mitochondrial mRNA modification;	--	NP_001332729.1 high molecular weight subunit-like glutenin [Arabidopsis thaliana]	40	22	23	18
AT5G45020	no change	0.4448451593716441	-0.5665664362468312	AT5G45020	--	GO:0004364,glutathione transferase activity; GO:0005737,cytoplasm; GO:0042221,response to chemical;	ECM4, yqjG; glutathionyl-hydroquinone reductase [EC:1.8.5.7]; K07393;	NP_001190472.1 Glutathione S-transferase family protein [Arabidopsis thaliana]	32	30	17	11
AT5G45030	no change	0.19397856099117844	0.4679030363506129	AT5G45030	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001032013.1 Trypsin family protein [Arabidopsis thaliana]	51	50	43	48
AT5G45040	no change	-0.05880329874800886	0.32714331304626776	AT5G45040	--	GO:0005506,iron ion binding; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0020037,heme binding; GO:0022900,electron transport chain; GO:0046872,metal ion binding;	petJ; cytochrome c6; K08906;	NP_568640.1 Cytochrome c [Arabidopsis thaliana]	35	29	35	19
AT5G45400	no change	0.6903061740864723	0.2996663960653154	AT5G45400	--	GO:0000724,double-strand break repair via homologous recombination; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003684,damaged DNA binding; GO:0005634,nucleus; GO:0005662,DNA replication factor A complex; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006281,DNA repair; GO:0006289,nucleotide-excision repair; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0007004,telomere maintenance via telomerase; GO:0043047,single-stranded telomeric DNA binding; GO:0046872,metal ion binding; GO:0051321,meiotic cell cycle;	RFA1, RPA1, rpa; replication factor A1; K07466;	NP_199353.1 Replication factor-A protein 1-like protein [Arabidopsis thaliana]	65	52	48	46
AT5G45470	no change	-0.4668345872207033	-0.4664355378715472	AT5G45470	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_199360.1 transmembrane protein, putative (DUF594) [Arabidopsis thaliana]	98	64	33	42
AT5G45480	no change	-0.3540573025070292	-0.5496777571246041	AT5G45480	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_199361.1 transmembrane protein, putative (DUF594) [Arabidopsis thaliana]	20	12	12	3
AT5G45930	no change	0.4804617194445696	-0.181779443116612	AT5G45930	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010007,magnesium chelatase complex; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016851,magnesium chelatase activity; GO:0016874,ligase activity; GO:0016887,ATP hydrolysis activity;	chlI, bchI; magnesium chelatase subunit I [EC:6.6.1.1]; K03405;	NP_199405.2 magnesium chelatase i2 [Arabidopsis thaliana]	223	261	150	133
AT5G45940	no change	0.0560175696501623	0.19729785223310023	AT5G45940	--	GO:0000210,NAD+ diphosphatase activity; GO:0003986,acetyl-CoA hydrolase activity; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005829,cytosol; GO:0006753,nucleoside phosphate metabolic process; GO:0008893,guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity; GO:0010945,CoA pyrophosphatase activity; GO:0015937,coenzyme A biosynthetic process; GO:0015938,coenzyme A catabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:2001294,malonyl-CoA catabolic process;	--	NP_001119380.1 nudix hydrolase homolog 11 [Arabidopsis thaliana]	8	28	14	14
AT5G46110	no change	-0.5922161798085052	-0.23378452439609157	AT5G46110	--	GO:0005794,Golgi apparatus; GO:0008643,carbohydrate transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009643,photosynthetic acclimation; GO:0015120,phosphoglycerate transmembrane transporter activity; GO:0015297,antiporter activity; GO:0015605,organophosphate ester transmembrane transporter activity; GO:0015713,phosphoglycerate transmembrane transport; GO:0015748,organophosphate ester transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0035436,triose phosphate transmembrane transport; GO:0055085,transmembrane transport; GO:0071917,triose-phosphate transmembrane transporter activity;	--	NP_851138.1 Glucose-6-phosphate/phosphate translocator-like protein [Arabidopsis thaliana]	3275	2941	1923	1568
AT5G46430	no change	-0.31304880355919207	0.35815104123649577	AT5G46430	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L32e, RPL32; large subunit ribosomal protein L32e; K02912;	NP_199455.1 Ribosomal protein L32e [Arabidopsis thaliana]	279	325	261	250
AT5G46570	no change	0.6730218631609993	-0.48900138840537216	AT5G46570	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	BSK; BR-signaling kinase [EC:2.7.11.1]; K14500;	NP_199469.1 BR-signaling kinase 2 [Arabidopsis thaliana]	92	61	43	29
AT5G46790	no change	0.1850246834994327	0.6208875745205895	AT5G46790	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009536,plastid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0062049,protein phosphatase inhibitor complex; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_001331305.1 PYR1-like 1 [Arabidopsis thaliana]	121	58	91	86
AT5G47060	no change	0.8416233482719828	0.11888987839874324	AT5G47060	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0019900,kinase binding; GO:0019902,phosphatase binding; GO:0042594,response to starvation; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia; GO:1905582,response to mannose;	--	NP_001330022.1 hypothetical protein (DUF581) [Arabidopsis thaliana]	108	87	80	60
AT5G47200	no change	0.5357794574357838	-0.03246525652825836	AT5G47200	--	GO:0000139,Golgi membrane; GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	RAB1A; Ras-related protein Rab-1A; K07874;	NP_568678.1 RAB GTPase homolog 1A [Arabidopsis thaliana]	465	346	320	207
AT5G47210	no change	0.6710583305978686	0.6304765556443395	AT5G47210	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0009536,plastid; GO:0048471,perinuclear region of cytoplasm;	--	NP_199532.1 Hyaluronan / mRNA binding family [Arabidopsis thaliana]	1749	1813	2135	1549
AT5G47430	no change	0.16458502394994304	0.05947148421764441	AT5G47430	--	GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0006397,mRNA processing; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_001330705.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]	66	95	44	65
AT5G47435	no change	-0.3741628740680713	0.6034138540721243	AT5G47435	--	GO:0005739,mitochondrion; GO:0006189,'de novo' IMP biosynthetic process; GO:0006730,one-carbon metabolic process; GO:0008864,formyltetrahydrofolate deformylase activity; GO:0009058,biosynthetic process; GO:0009853,photorespiration; GO:0016787,hydrolase activity; GO:0046653,tetrahydrofolate metabolic process;	purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]; K01433;	NP_568682.1 formyltetrahydrofolate deformylase [Arabidopsis thaliana]	18	12	12	17
AT5G47560	no change	0.4720997067889371	-0.24600646731966644	AT5G47560	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0015140,malate transmembrane transporter activity; GO:0015743,malate transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0051453,regulation of intracellular pH; GO:0055085,transmembrane transport; GO:0071423,malate transmembrane transport; GO:0098656,anion transmembrane transport;	--	NP_199567.1 tonoplast dicarboxylate transporter [Arabidopsis thaliana]	221	239	138	119
AT5G47640	no change	-0.0477472805383208	-0.25643165289254727	AT5G47640	NF-YB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0016602,CCAAT-binding factor complex; GO:0043565,sequence-specific DNA binding; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046982,protein heterodimerization activity; GO:0048574,long-day photoperiodism, flowering;	NFYB, HAP3; nuclear transcription Y subunit beta; K08065;	NP_199575.1 nuclear factor Y, subunit B2 [Arabidopsis thaliana]	74	49	35	32
AT5G47650	no change	0.17478528398934526	-0.05085801265745218	AT5G47650	--	GO:0000210,NAD+ diphosphatase activity; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0016787,hydrolase activity; GO:0035529,NADH pyrophosphatase activity; GO:0046872,metal ion binding; GO:0047631,ADP-ribose diphosphatase activity; GO:0051287,NAD binding;	--	NP_001331650.1 nudix hydrolase homolog 2 [Arabidopsis thaliana]	11	27	14	11
AT5G47720	no change	0.03233016359210487	-0.10431417207366314	AT5G47720	--	GO:0003985,acetyl-CoA C-acetyltransferase activity; GO:0005737,cytoplasm; GO:0006635,fatty acid beta-oxidation; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0046872,metal ion binding;	ACAT, atoB; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; K00626;	NP_851150.1 Thiolase family protein [Arabidopsis thaliana]	57	47	42	23
AT5G47730	no change	-0.9298506509112076	0.07503702114537904	AT5G47730	--	GO:0003674,molecular_function;	--	NP_001330995.1 Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]	25	38	27	18
AT5G47770	no change	-0.9952480277696836	-0.27826274302904536	AT5G47770	--	GO:0004161,dimethylallyltranstransferase activity; GO:0004337,geranyltranstransferase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0006695,cholesterol biosynthetic process; GO:0008202,steroid metabolic process; GO:0008203,cholesterol metabolic process; GO:0008299,isoprenoid biosynthetic process; GO:0009536,plastid; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; GO:0033384,geranyl diphosphate biosynthetic process; GO:0045337,farnesyl diphosphate biosynthetic process; GO:0046872,metal ion binding;	FDPS; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]; K00787;	NP_199588.1 farnesyl diphosphate synthase 1 [Arabidopsis thaliana]	668	561	332	329
AT5G47860	no change	0.08307124995925591	-0.13474415269430606	AT5G47860	--	GO:0003674,molecular_function; GO:0009507,chloroplast;	--	NP_199597.1 Gut esterase (DUF1350) [Arabidopsis thaliana]	169	150	101	90
AT5G47870	no change	0.04301359507479445	-0.3408051208646143	AT5G47870	--	GO:0000724,double-strand break repair via homologous recombination; GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_199598.1 cobalt ion-binding protein [Arabidopsis thaliana]	381	380	202	193
AT5G47910	no change	0.5955436612876253	0.19960685006031695	AT5G47910	--	GO:0000293,ferric-chelate reductase activity; GO:0004601,peroxidase activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007231,osmosensory signaling pathway; GO:0009408,response to heat; GO:0009536,plastid; GO:0009611,response to wounding; GO:0016020,membrane; GO:0016174,NAD(P)H oxidase H2O2-forming activity; GO:0016491,oxidoreductase activity; GO:0033500,carbohydrate homeostasis; GO:0043069,negative regulation of programmed cell death; GO:0046872,metal ion binding; GO:0050664,oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor; GO:0050832,defense response to fungus; GO:0071456,cellular response to hypoxia; GO:0072593,reactive oxygen species metabolic process; GO:0098869,cellular oxidant detoxification;	RBOH; respiratory burst oxidase [EC:1.6.3.- 1.11.1.-]; K13447;	NP_199602.1 respiratory burst oxidase homologue D [Arabidopsis thaliana]	190	201	169	130
AT5G48220	no change	-0.08947631245457043	-0.0986758817622674	AT5G48220	--	GO:0000162,tryptophan biosynthetic process; GO:0004425,indole-3-glycerol-phosphate synthase activity; GO:0004640,phosphoribosylanthranilate isomerase activity; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity;	trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]; K01609;	NP_001190488.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	121	114	58	83
AT5G48230	no change	0.2976587323855076	-0.8426797859588516	AT5G48230	--	GO:0003985,acetyl-CoA C-acetyltransferase activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006635,fatty acid beta-oxidation; GO:0008299,isoprenoid biosynthetic process; GO:0009536,plastid; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0016125,sterol metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0046872,metal ion binding;	ACAT, atoB; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; K00626;	NP_568694.2 acetoacetyl-CoA thiolase 2 [Arabidopsis thaliana]	671	566	263	194
AT5G48480	no change	0.23316428128119984	-0.505465761729295	AT5G48480	--	GO:0005829,cytosol;	--	NP_568698.1 Lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]	1762	1586	869	691
AT5G48580	no change	0.12115676478739112	-0.9960224242416604	AT5G48580	--	GO:0000325,plant-type vacuole; GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005794,Golgi apparatus; GO:0009536,plastid; GO:0009620,response to fungus; GO:0016853,isomerase activity; GO:0034976,response to endoplasmic reticulum stress; GO:0061077,chaperone-mediated protein folding; GO:0071781,endoplasmic reticulum cisternal network; GO:0085035,haustorium;	--	NP_199669.1 FK506- and rapamycin-binding protein 15 kD-2 [Arabidopsis thaliana]	278	271	110	74
AT5G48800	no change	-0.11960549352902974	0.5445777157198789	AT5G48800	--	GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_199691.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	80	58	67	64
AT5G48870	no change	-0.591220394832832	-0.03234539638187841	AT5G48870	--	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000398,mRNA splicing, via spliceosome; GO:0000932,P-body; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005688,U6 snRNP; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0120115,Lsm2-8 complex; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex;	LSM5; U6 snRNA-associated Sm-like protein LSm5; K12624;	NP_199698.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	87	101	76	48
AT5G48880	no change	0.6895273348094216	-0.801568772793266	AT5G48880	--	GO:0003988,acetyl-CoA C-acyltransferase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0006635,fatty acid beta-oxidation; GO:0010124,phenylacetate catabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0031408,oxylipin biosynthetic process;	ACAA1; acetyl-CoA acyltransferase 1 [EC:2.3.1.16]; K07513;	NP_851157.1 peroxisomal 3-keto-acyl-CoA thiolase 2 [Arabidopsis thaliana]	1485	1360	616	467
AT5G49360	no change	0.773626727526043	-0.04460496088243647	AT5G49360	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0009536,plastid; GO:0010214,seed coat development; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; GO:0048046,apoplast;	--	NP_199747.1 beta-xylosidase 1 [Arabidopsis thaliana]	2567	2424	1724	1469
AT5G49530	no change	0.4835781188780708	-0.22747037216175725	AT5G49530	--	GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006351,DNA-templated transcription;	RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5; K14721;	NP_199764.1 SIN-like family protein [Arabidopsis thaliana]	135	88	87	41
AT5G49650	no change	-0.7599776290717968	-0.41536155026289934	AT5G49650	--	GO:0000166,nucleotide binding; GO:0004856,xylulokinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005997,xylulose metabolic process; GO:0009536,plastid; GO:0016117,carotenoid biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0042732,D-xylose metabolic process; GO:0046835,carbohydrate phosphorylation;	xylB, XYLB; xylulokinase [EC:2.7.1.17]; K00854;	NP_199776.1 xylulose kinase-2 [Arabidopsis thaliana]	354	410	202	178
AT5G49945	no change	-0.4001229444072754	-0.3096856976467877	AT5G49945	--	GO:0005509,calcium ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0032469,endoplasmic reticulum calcium ion homeostasis;	--	NP_568716.1 hypothetical protein (DUF1682) [Arabidopsis thaliana]	97	131	98	31
AT5G49950	no change	0.40785245805750014	0.2578167563729112	AT5G49950	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0034338,short-chain carboxylesterase activity; GO:0044255,cellular lipid metabolic process; GO:0047372,acylglycerol lipase activity;	--	NP_199806.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	128	97	88	87
AT5G50240	no change	0.3284834228386067	-0.8163912418804453	AT5G50240	--	GO:0004719,protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006479,protein methylation; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0030091,protein repair; GO:0032259,methylation; GO:0036211,protein modification process;	E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]; K00573;	NP_199835.2 protein-l-isoaspartate methyltransferase 2 [Arabidopsis thaliana]	23	16	5	9
AT5G50250	no change	-0.2833618047832704	-0.1183581764987783	AT5G50250	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0008266,poly(U) RNA binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0045087,innate immune response; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_199836.1 chloroplast RNA-binding protein 31B [Arabidopsis thaliana]	315	280	205	158
AT5G50320	no change	0.6440029764052281	-0.25059333870323564	AT5G50320	--	GO:0000049,tRNA binding; GO:0000791,euchromatin; GO:0002098,tRNA wobble uridine modification; GO:0002926,tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation; GO:0003723,RNA binding; GO:0003824,catalytic activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008033,tRNA processing; GO:0009294,DNA-mediated transformation; GO:0009734,auxin-activated signaling pathway; GO:0010928,regulation of auxin mediated signaling pathway; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0033588,elongator holoenzyme complex; GO:0035265,organ growth; GO:0046872,metal ion binding; GO:0051301,cell division; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0090708,specification of plant organ axis polarity; GO:0106261,tRNA uridine(34) acetyltransferase activity; GO:2000025,regulation of leaf formation;	--	NP_568725.1 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	151	147	92	74
AT5G50920	no change	-0.594554365391468	-0.5449225714478195	AT5G50920	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004176,ATP-dependent peptidase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0015031,protein transport; GO:0016020,membrane; GO:0016887,ATP hydrolysis activity; GO:0031897,Tic complex; GO:0031969,chloroplast membrane; GO:0045036,protein targeting to chloroplast; GO:0045037,protein import into chloroplast stroma;	--	NP_568746.1 CLPC homologue 1 [Arabidopsis thaliana]	6615	6000	3113	2592
AT5G51010	no change	0.02923655080486407	0.49298840916799186	AT5G51010	--	GO:0005506,iron ion binding; GO:0009536,plastid; GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_568749.1 Rubredoxin-like superfamily protein [Arabidopsis thaliana]	67	74	68	63
AT5G51020	no change	-0.39326593889951783	0.09403061644923276	AT5G51020	--	GO:0000302,response to reactive oxygen species; GO:0006952,defense response; GO:0007049,cell cycle; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0016829,lyase activity; GO:0017009,protein-phycocyanobilin linkage; GO:0043572,plastid fission; GO:0046741,transport of virus in host, tissue to tissue; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0098586,cellular response to virus;	--	NP_199915.1 crumpled leaf [Arabidopsis thaliana]	52	32	19	37
AT5G51120	no change	-0.18729990339947825	-0.3207092158471379	AT5G51120	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008143,poly(A) binding; GO:0016020,membrane; GO:0016607,nuclear speck;	PABPN1, PABP2; polyadenylate-binding protein 2; K14396;	NP_001190512.1 polyadenylate-binding protein 1 [Arabidopsis thaliana]	151	209	132	66
AT5G51140	no change	0.7088046500132177	0.3260285011825918	AT5G51140	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_199927.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	56	35	33	40
AT5G51690	no change	0.44140806158762474	0.6982763854944218	AT5G51690	--	GO:0003824,catalytic activity; GO:0004069,L-aspartate:2-oxoglutarate aminotransferase activity; GO:0006520,cellular amino acid metabolic process; GO:0008483,transaminase activity; GO:0008793,aromatic-amino-acid:2-oxoglutarate aminotransferase activity; GO:0009058,biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding;	--	NP_199982.2 1-amino-cyclopropane-1-carboxylate synthase 12 [Arabidopsis thaliana]	18	17	23	15
AT5G51880	no change	-0.7111811848207472	-0.2561213277001059	AT5G51880	--	GO:0004656,procollagen-proline 4-dioxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0018401,peptidyl-proline hydroxylation to 4-hydroxy-L-proline; GO:0031418,L-ascorbic acid binding; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_568767.2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	141	99	74	58
AT5G51980	no change	0.497412297807983	-0.2548904372936807	AT5G51980	C3H	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0046872,metal ion binding;	--	NP_001318784.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	42	51	18	32
AT5G52100	no change	0.4139761268781182	0.07273033379438193	AT5G52100	--	GO:0008652,cellular amino acid biosynthetic process; GO:0008839,4-hydroxy-tetrahydrodipicolinate reductase; GO:0009085,lysine biosynthetic process; GO:0009089,lysine biosynthetic process via diaminopimelate; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0019684,photosynthesis, light reaction; GO:0019877,diaminopimelate biosynthetic process;	CRR1; chloroplast NAD(P)H dehydrogenase [EC:1.6.99.-]; K16908;	NP_200023.1 Dihydrodipicolinate reductase, bacterial/plant [Arabidopsis thaliana]	44	47	32	31
AT5G52110	no change	-0.4613173840941873	-0.7072766251381997	AT5G52110	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane;	--	NP_001032060.1 chaperone (DUF2930) [Arabidopsis thaliana]	28	23	8	12
AT5G52190	no change	-0.07595679316409853	-0.3939185148282115	AT5G52190	--	GO:0005829,cytosol; GO:0016853,isomerase activity; GO:0097367,carbohydrate derivative binding; GO:1901135,carbohydrate derivative metabolic process;	--	NP_200032.1 Sugar isomerase (SIS) family protein [Arabidopsis thaliana]	27	22	16	9
AT5G52310	no change	-0.9016823038660274	-0.23349296596969263	AT5G52310	--	GO:0000302,response to reactive oxygen species; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006970,response to osmotic stress; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0009609,response to symbiotic bacterium; GO:0009611,response to wounding; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0010150,leaf senescence; GO:0010555,response to mannitol; GO:0042538,hyperosmotic salinity response; GO:1902074,response to salt; GO:2000280,regulation of root development;	--	NP_200044.1 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) [Arabidopsis thaliana]	2164	1904	1220	1056
AT5G52420	no change	0.07818570372882927	-0.48086808872900166	AT5G52420	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0009536,plastid; GO:0016020,membrane;	--	NP_568771.1 transmembrane protein [Arabidopsis thaliana]	61	74	49	18
AT5G52470	no change	0.7841767506048286	0.4023119055289187	AT5G52470	--	GO:0000494,box C/D RNA 3'-end processing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0008649,rRNA methyltransferase activity; GO:0009536,plastid; GO:0016740,transferase activity; GO:0030515,snoRNA binding; GO:0031167,rRNA methylation; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0032259,methylation; GO:1990258,histone glutamine methylation; GO:1990259,histone-glutamine methyltransferase activity; GO:1990904,ribonucleoprotein complex;	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]; K14563;	NP_568772.3 fibrillarin 1 [Arabidopsis thaliana]	1167	1182	1108	945
AT5G52840	no change	0.5413174224194878	0.4349782743086463	AT5G52840	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0009536,plastid; GO:0009853,photorespiration; GO:0016020,membrane; GO:0022904,respiratory electron transport chain; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5; K03949;	NP_568778.1 NADH-ubiquinone oxidoreductase-like protein [Arabidopsis thaliana]	426	434	415	354
AT5G52850	no change	0.6284803532285455	-0.5126003044700195	AT5G52850	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0043231,intracellular membrane-bounded organelle;	--	NP_200097.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	26	28	13	12
AT5G53120	no change	0.4644905997680058	-0.08680411987766053	AT5G53120	--	GO:0003824,catalytic activity; GO:0004766,spermidine synthase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006595,polyamine metabolic process; GO:0006596,polyamine biosynthetic process; GO:0006597,spermine biosynthetic process; GO:0016740,transferase activity; GO:0016768,spermine synthase activity; GO:0042742,defense response to bacterium;	speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16]; K00797;	NP_001190527.1 spermidine synthase 3 [Arabidopsis thaliana]	381	291	199	211
AT5G53130	no change	-0.00381889290099195	0.00819561399672382	AT5G53130	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_200125.1 cyclic nucleotide gated channel 1 [Arabidopsis thaliana]	160	141	127	76
AT5G53280	no change	0.9873320451177504	-0.32108100914593907	AT5G53280	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009739,response to gibberellin; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0070273,phosphatidylinositol-4-phosphate binding;	--	NP_200140.1 plastid division1 [Arabidopsis thaliana]	49	46	26	24
AT5G53330	no change	-0.22956615208275513	-0.22627015201055692	AT5G53330	--	GO:0000813,ESCRT I complex; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0006414,translational elongation; GO:0009536,plastid; GO:0043130,ubiquitin binding; GO:0043162,ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway;	--	NP_568790.1 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	32	58	29	23
AT5G53340	no change	-0.4224775638433853	0.4654065780930936	AT5G53340	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008194,UDP-glycosyltransferase activity; GO:0008378,galactosyltransferase activity; GO:0010405,arabinogalactan protein metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0018258,protein O-linked glycosylation via hydroxyproline; GO:1990714,hydroxyproline O-galactosyltransferase activity;	--	NP_568791.1 Galactosyltransferase family protein [Arabidopsis thaliana]	51	46	62	29
AT5G53430	no change	-0.14936255968742013	-0.24855230296894051	AT5G53430	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006357,regulation of transcription by RNA polymerase II; GO:0008168,methyltransferase activity; GO:0009294,DNA-mediated transformation; GO:0009506,plasmodesma; GO:0016570,histone modification; GO:0016740,transferase activity; GO:0018024,histone-lysine N-methyltransferase activity; GO:0031011,Ino80 complex; GO:0032259,methylation; GO:0046872,metal ion binding; GO:0048188,Set1C/COMPASS complex; GO:0051171,regulation of nitrogen compound metabolic process; GO:0051571,positive regulation of histone H3-K4 methylation; GO:0060255,regulation of macromolecule metabolic process; GO:0080090,regulation of primary metabolic process;	--	NP_200155.2 SET domain group 29 [Arabidopsis thaliana]	22	27	7	19
AT5G53440	no change	-0.6846944496042503	0.31705131906204376	AT5G53440	--	GO:0003674,molecular_function;	--	NP_200156.1 LOW protein: zinc finger CCCH domain protein [Arabidopsis thaliana]	173	207	202	119
AT5G53570	no change	0.7130953533211046	0.5515961786956416	AT5G53570	--	GO:0005096,GTPase activator activity; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0006952,defense response; GO:0050790,regulation of catalytic activity; GO:0090630,activation of GTPase activity;	--	NP_200169.1 Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]	93	66	85	68
AT5G53740	no change	0.6702912293095933	0.8817527131563693	AT5G53740	--	GO:0005576,extracellular region; GO:0009567,double fertilization forming a zygote and endosperm; GO:0031982,vesicle; GO:0080155,regulation of double fertilization forming a zygote and endosperm; GO:2000008,regulation of protein localization to cell surface;	--	NP_200185.1 hypothetical protein AT5G53740 [Arabidopsis thaliana]	38	44	63	39
AT5G53900	no change	-0.03037580142243761	-0.1596800107097491	AT5G53900	--	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_200201.3 Serine/threonine-protein kinase WNK (With No Lysine)-like protein [Arabidopsis thaliana]	18	6	14	1
AT5G54080	no change	0.04240183197961912	0.4284308762615728	AT5G54080	--	GO:0004411,homogentisate 1,2-dioxygenase activity; GO:0006520,cellular amino acid metabolic process; GO:0006559,L-phenylalanine catabolic process; GO:0006570,tyrosine metabolic process; GO:0006572,tyrosine catabolic process; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:1902000,homogentisate catabolic process;	HGD, hmgA; homogentisate 1,2-dioxygenase [EC:1.13.11.5]; K00451;	NP_200219.1 homogentisate 1,2-dioxygenase [Arabidopsis thaliana]	348	287	326	240
AT5G54270	no change	-0.3475417567063604	-0.9434900653694872	AT5G54270	--	GO:0005515,protein binding; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009635,response to herbicide; GO:0009644,response to high light intensity; GO:0009737,response to abscisic acid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0010119,regulation of stomatal movement; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0042651,thylakoid membrane; GO:0046872,metal ion binding;	LHCB3; light-harvesting complex II chlorophyll a/b binding protein 3; K08914;	NP_200238.1 light-harvesting chlorophyll B-binding protein 3 [Arabidopsis thaliana]	12455	10989	4535	3532
AT5G54280	no change	-0.29759997315908276	-0.03356552530028357	AT5G54280	--	GO:0000146,microfilament motor activity; GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003779,actin binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0006897,endocytosis; GO:0007015,actin filament organization; GO:0009506,plasmodesma; GO:0015629,actin cytoskeleton; GO:0016459,myosin complex; GO:0030048,actin filament-based movement; GO:0030050,vesicle transport along actin filament; GO:0031982,vesicle; GO:0051015,actin filament binding; GO:0070161,anchoring junction;	MYO5; myosin V; K10357;	NP_568806.3 myosin 2 [Arabidopsis thaliana]	88	51	46	42
AT5G54600	no change	-0.15984705335660632	-0.6163614178753857	AT5G54600	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:1990904,ribonucleoprotein complex;	RP-L24, MRPL24, rplX; large subunit ribosomal protein L24; K02895;	NP_851190.1 Translation protein SH3-like family protein [Arabidopsis thaliana]	377	365	201	124
AT5G54920	no change	0.7033990882010241	0.1478327558876172	AT5G54920	--	GO:0003723,RNA binding; GO:0010494,cytoplasmic stress granule; GO:0034063,stress granule assembly;	--	NP_001119437.1 polyadenylate-binding protein interacting protein [Arabidopsis thaliana]	18	28	23	12
AT5G55200	no change	0.33456898302345156	0.4883103597841365	AT5G55200	--	GO:0000166,nucleotide binding; GO:0000774,adenyl-nucleotide exchange factor activity; GO:0001405,PAM complex, Tim23 associated import motor; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0009411,response to UV; GO:0030150,protein import into mitochondrial matrix; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	--	NP_200331.1 Co-chaperone GrpE family protein [Arabidopsis thaliana]	59	69	63	56
AT5G55210	no change	0.6312179054060624	0.13832724847427208	AT5G55210	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0072598,protein localization to chloroplast;	--	NP_200332.1 hypothetical protein AT5G55210 [Arabidopsis thaliana]	117	110	95	71
AT5G55540	no change	-0.8725066954775594	-0.02268432912964047	AT5G55540	--	GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0009734,auxin-activated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009926,auxin polar transport; GO:0009933,meristem structural organization; GO:0009956,radial pattern formation; GO:0009965,leaf morphogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0010540,basipetal auxin transport; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_200365.1 tornado 1 [Arabidopsis thaliana]	129	148	108	75
AT5G55660	no change	-0.35811257655341083	-0.3592185961229723	AT5G55660	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006325,chromatin organization; GO:0009536,plastid; GO:0042393,histone binding; GO:2000779,regulation of double-strand break repair;	--	NP_200377.1 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]	511	519	280	250
AT5G55700	no change	-0.17228830160047975	0.21030287241576612	AT5G55700	--	GO:0000272,polysaccharide catabolic process; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016161,beta-amylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102229,amylopectin maltohydrolase activity;	--	NP_568829.2 beta-amylase 4 [Arabidopsis thaliana]	77	96	76	58
AT5G55930	no change	0.604914020803523	-0.8845145901018403	AT5G55930	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_200404.1 oligopeptide transporter 1 [Arabidopsis thaliana]	259	215	92	77
AT5G56220	no change	0.6199893732262283	0.24024133506557935	AT5G56220	--	GO:0000725,recombinational repair; GO:0007165,signal transduction; GO:0016787,hydrolase activity;	--	NP_001318809.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	48	71	61	35
AT5G56950	no change	0.8118267029571583	0.18879264355603753	AT5G56950	--	GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0009536,plastid; GO:0016444,somatic cell DNA recombination; GO:0042393,histone binding; GO:0042802,identical protein binding;	--	NP_568844.1 nucleosome assembly protein 1;3 [Arabidopsis thaliana]	254	203	169	170
AT5G56980	no change	-0.2139218755354476	0.04348618900064826	AT5G56980	--	GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009753,response to jasmonic acid; GO:0016020,membrane; GO:0042742,defense response to bacterium;	--	NP_568845.1 cotton fiber protein [Arabidopsis thaliana]	21	27	18	15
AT5G57035	no change	-0.5832731156544473	0.1897000291072057	AT5G57035	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_680448.2 U-box domain-containing protein kinase family protein [Arabidopsis thaliana]	129	118	91	93
AT5G57040	no change	-0.4392965531086086	-0.399222194492764	AT5G57040	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016829,lyase activity;	yaeR; glyoxylase I family protein; K08234;	NP_200514.1 Lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]	60	54	20	35
AT5G57070	no change	0.878725880765194	0.3467366175587145	AT5G57070	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_200517.2 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	162	147	145	115
AT5G57150	no change	-0.38117903729235575	-0.3739798043525052	AT5G57150	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016020,membrane; GO:0046983,protein dimerization activity;	--	NP_001190556.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	9	14	7	5
AT5G57160	no change	0.1286474358958553	0.10975356755386048	AT5G57160	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003909,DNA ligase activity; GO:0003910,DNA ligase (ATP) activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006297,nucleotide-excision repair, DNA gap filling; GO:0006302,double-strand break repair; GO:0006303,double-strand break repair via nonhomologous end joining; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0009506,plasmodesma; GO:0010165,response to X-ray; GO:0016874,ligase activity; GO:0032807,DNA ligase IV complex; GO:0046872,metal ion binding; GO:0051103,DNA ligation involved in DNA repair; GO:0071897,DNA biosynthetic process;	LIG4, DNL4; DNA ligase 4 [EC:6.5.1.1]; K10777;	NP_568851.2 DNA ligase IV [Arabidopsis thaliana]	63	59	53	35
AT5G57240	no change	-0.0440853451210428	0.00191368562710121	AT5G57240	--	GO:0005829,cytosol; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0015248,sterol transporter activity; GO:0015918,sterol transport; GO:0016020,membrane; GO:0032934,sterol binding; GO:0043231,intracellular membrane-bounded organelle;	--	NP_001032088.1 OSBP(oxysterol binding protein)-related protein 4C [Arabidopsis thaliana]	114	108	86	62
AT5G57380	no change	0.25583664159623293	-0.7617268272199528	AT5G57380	--	GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005677,chromatin silencing complex; GO:0006950,response to stress; GO:0009409,response to cold; GO:0010048,vernalization response; GO:0016607,nuclear speck; GO:0040029,epigenetic regulation of gene expression; GO:0045814,negative regulation of gene expression, epigenetic; GO:0046872,metal ion binding; GO:0051571,positive regulation of histone H3-K4 methylation; GO:0061087,positive regulation of histone H3-K27 methylation; GO:0070417,cellular response to cold;	--	NP_200548.2 Fibronectin type III domain-containing protein [Arabidopsis thaliana]	19	37	16	7
AT5G57560	no change	0.4035010413442861	-0.6435639794172023	AT5G57560	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005618,cell wall; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0006073,cellular glucan metabolic process; GO:0008152,metabolic process; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009612,response to mechanical stimulus; GO:0009664,plant-type cell wall organization; GO:0009733,response to auxin; GO:0009741,response to brassinosteroid; GO:0010411,xyloglucan metabolic process; GO:0016740,transferase activity; GO:0016762,xyloglucan:xyloglucosyl transferase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030247,polysaccharide binding; GO:0042546,cell wall biogenesis; GO:0048046,apoplast; GO:0071456,cellular response to hypoxia; GO:0071555,cell wall organization; GO:0099503,secretory vesicle;	TCH4; xyloglucan:xyloglucosyl transferase TCH4 [EC:2.4.1.207]; K14504;	NP_200564.1 Xyloglucan endotransglucosylase/hydrolase family protein [Arabidopsis thaliana]	38	36	21	11
AT5G58070	no change	0.2788925663567923	0.37542543337938	AT5G58070	--	GO:0000302,response to reactive oxygen species; GO:0000325,plant-type vacuole; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006883,cellular sodium ion homeostasis; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009416,response to light stimulus; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009644,response to high light intensity; GO:0009898,cytoplasmic side of plasma membrane; GO:0009941,chloroplast envelope; GO:0010286,heat acclimation; GO:0010431,seed maturation; GO:0016020,membrane; GO:0030644,cellular chloride ion homeostasis; GO:0031969,chloroplast membrane; GO:0042538,hyperosmotic salinity response; GO:0045735,nutrient reservoir activity; GO:0050826,response to freezing; GO:0071456,cellular response to hypoxia; GO:1901002,positive regulation of response to salt stress; GO:1901562,response to paraquat; GO:1902884,positive regulation of response to oxidative stress;	--	NP_200615.1 temperature-induced lipocalin [Arabidopsis thaliana]	927	753	827	615
AT5G58140	no change	0.0877643388927185	0.06039988615129246	AT5G58140	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0007623,circadian rhythm; GO:0009536,plastid; GO:0009637,response to blue light; GO:0009638,phototropism; GO:0009785,blue light signaling pathway; GO:0009881,photoreceptor activity; GO:0009882,blue light photoreceptor activity; GO:0009902,chloroplast relocation; GO:0010118,stomatal movement; GO:0010181,FMN binding; GO:0010362,negative regulation of anion channel activity by blue light; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046777,protein autophosphorylation; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_001318824.1 phototropin 2 [Arabidopsis thaliana]	213	187	166	112
AT5G58150	no change	-0.25144461126185813	-0.41312120822383913	AT5G58150	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane;	--	NP_200623.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	24	30	9	17
AT5G58230	no change	0.3567892028833554	-0.09011283855890864	AT5G58230	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005677,chromatin silencing complex; GO:0006260,DNA replication; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006349,regulation of gene expression by genomic imprinting; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0009908,flower development; GO:0009909,regulation of flower development; GO:0010026,trichome differentiation; GO:0010214,seed coat development; GO:0030154,cell differentiation; GO:0031507,heterochromatin formation; GO:0032991,protein-containing complex; GO:0042393,histone binding; GO:0045787,positive regulation of cell cycle; GO:0048316,seed development; GO:0048366,leaf development; GO:0070176,DRM complex; GO:0070828,heterochromatin organization; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:2000653,regulation of genetic imprinting;	RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4; K10752;	NP_200631.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	390	354	292	177
AT5G58320	no change	-0.00747964724022254	-0.9919483312866776	AT5G58320	--	GO:0003779,actin binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005884,actin filament; GO:0016020,membrane; GO:0110165,cellular anatomical entity;	--	NP_001318828.1 Kinase interacting (KIP1-like) family protein [Arabidopsis thaliana]	21	25	6	9
AT5G58330	no change	0.3027196403643334	-0.5327167282265765	AT5G58330	--	GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0006099,tricarboxylic acid cycle; GO:0006107,oxaloacetate metabolic process; GO:0006108,malate metabolic process; GO:0006734,NADH metabolic process; GO:0008746,NAD(P)+ transhydrogenase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016615,malate dehydrogenase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0030060,L-malate dehydrogenase activity; GO:0046554,malate dehydrogenase (NADP+) activity; GO:0048046,apoplast; GO:0051775,response to redox state;	E1.1.1.82; malate dehydrogenase (NADP+) [EC:1.1.1.82]; K00051;	NP_568875.2 lactate/malate dehydrogenase family protein [Arabidopsis thaliana]	1677	1509	777	673
AT5G58340	no change	-0.0489034076182728	-0.49761030252563593	AT5G58340	MYB_related	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_001190566.1 myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]	14	32	6	15
AT5G58375	no change	0.07244811031250603	0.4369833962483693	AT5G58375	--	GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_568877.1 Methyltransferase-related protein [Arabidopsis thaliana]	43	37	37	34
AT5G58530	no change	-0.5484635436919554	0.30857816042825303	AT5G58530	--	GO:0003729,mRNA binding;	--	NP_200661.1 Glutaredoxin family protein [Arabidopsis thaliana]	46	31	32	30
AT5G58540	no change	-0.1948444369154876	-0.20854591588946617	AT5G58540	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_974960.1 Protein kinase superfamily protein [Arabidopsis thaliana]	8	14	8	5
AT5G58560	no change	-0.5039347949710706	-0.01004186979948504	AT5G58560	--	GO:0006720,isoprenoid metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016487,farnesol metabolic process; GO:0016740,transferase activity; GO:0031969,chloroplast membrane; GO:0048440,carpel development; GO:0052668,CTP:farnesol kinase activity; GO:0052670,geraniol kinase activity; GO:0052671,geranylgeraniol kinase activity; GO:0052672,CTP:geranylgeraniol kinase activity; GO:0102237,ATP:farnesol kinase activity; GO:0102243,ATP:geranylgeraniol phosphotransferase activity;	FOLK; farnesol kinase [EC:2.7.1.216]; K15892;	NP_200664.1 Phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana]	180	137	120	88
AT5G58720	no change	0.6629608890378955	0.6124647218076946	AT5G58720	--	--	--	NP_200680.1 smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]	85	70	75	79
AT5G59030	no change	-0.4799244187393526	-0.1068062679855066	AT5G59030	--	GO:0005375,copper ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0035434,copper ion transmembrane transport; GO:0048235,pollen sperm cell differentiation; GO:0048364,root development;	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1; K14686;	NP_200711.1 copper transporter 1 [Arabidopsis thaliana]	61	63	56	23
AT5G59400	no change	0.37486767511576147	0.8348178283547248	AT5G59400	--	GO:0009535,chloroplast thylakoid membrane; GO:0009773,photosynthetic electron transport in photosystem I; GO:0016020,membrane; GO:0016730,oxidoreductase activity, acting on iron-sulfur proteins as donors;	--	NP_851220.1 PGR5-like A protein [Arabidopsis thaliana]	12	29	24	25
AT5G59450	no change	0.23096205434673517	0.5285640269235751	AT5G59450	GRAS	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_200753.1 GRAS family transcription factor [Arabidopsis thaliana]	48	78	56	64
AT5G59460	no change	0.3903595982315906	0.16007385584504188	AT5G59460	--	GO:0000460,maturation of 5.8S rRNA; GO:0005575,cellular_component;	MPHOSPH6, MPP6; M-phase phosphoprotein 6, animal type; K12593;	NP_568908.1 scarecrow-like transcription factor 11 (SCL11) [Arabidopsis thaliana]	26	42	33	19
AT5G59580	no change	-0.8352582114625609	0.7240296159249899	AT5G59580	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_200766.2 UDP-glucosyl transferase 76E1 [Arabidopsis thaliana]	5	12	5	13
AT5G59610	no change	0.334377135493945	0.09923712417775286	AT5G59610	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042026,protein refolding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_001330548.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	14	26	11	17
AT5G59660	no change	0.7896917377454433	0.8289392408942841	AT5G59660	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_001331676.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	3	8	11	3
AT5G59730	no change	-0.7866493215710676	-0.2742956264607563	AT5G59730	--	GO:0000145,exocyst; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006887,exocytosis; GO:0015031,protein transport;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_200781.1 exocyst subunit exo70 family protein H7 [Arabidopsis thaliana]	304	330	174	171
AT5G60020	no change	-0.6993531850102739	0.08502202448328022	AT5G60020	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009698,phenylpropanoid metabolic process; GO:0009809,lignin biosynthetic process; GO:0016491,oxidoreductase activity; GO:0046274,lignin catabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0052716,hydroquinone:oxygen oxidoreductase activity;	E1.10.3.2; laccase [EC:1.10.3.2]; K05909;	NP_200810.1 laccase 17 [Arabidopsis thaliana]	278	218	201	147
AT5G60390	no change	0.8143884937594092	0.14870475651086182	AT5G60390	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0048471,perinuclear region of cytoplasm;	EEF1A; elongation factor 1-alpha; K03231;	EFH68683.1 T6D22.2 [Arabidopsis lyrata subsp. lyrata]	9636	9517	8165	5993
AT5G60400	no change	-0.20422738285766523	0.23169137303068535	AT5G60400	--	--	--	NP_974968.1 hypothetical protein AT5G60400 [Arabidopsis thaliana]	75	53	62	38
AT5G60630	no change	0.2195234070220041	0.05015055388943858	AT5G60630	--	GO:0016020,membrane;	--	NP_200871.1 transmembrane protein [Arabidopsis thaliana]	18	6	9	7
AT5G60860	no change	-0.3878820827636644	0.1389998474990703	AT5G60860	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	RAB11A; Ras-related protein Rab-11A; K07904;	NP_200894.1 RAB GTPase homolog A1F [Arabidopsis thaliana]	66	73	68	36
AT5G60870	no change	-0.6759248856636819	0.6130905252681408	AT5G60870	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006974,cellular response to DNA damage stimulus; GO:0008380,RNA splicing; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0072702,response to methyl methanesulfonate; GO:2001020,regulation of response to DNA damage stimulus;	--	NP_001078775.1 Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]	23	21	22	22
AT5G61030	no change	-0.07163196307506277	0.19743634598487764	AT5G61030	--	GO:0003676,nucleic acid binding; GO:0003697,single-stranded DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0009409,response to cold; GO:0016554,cytidine to uridine editing; GO:0080156,mitochondrial mRNA modification; GO:1990904,ribonucleoprotein complex;	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3; K12741;	NP_001330940.1 glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]	153	156	135	101
AT5G61190	no change	0.29617883319720245	0.19583489504297943	AT5G61190	--	GO:0003676,nucleic acid binding; GO:0004519,endonuclease activity; GO:0004540,ribonuclease activity; GO:0005777,peroxisome; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0035194,post-transcriptional gene silencing by RNA; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1903231,mRNA base-pairing post-transcriptional repressor activity;	--	NP_001331003.1 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]	60	85	60	51
AT5G61340	no change	-0.3371448510292615	-0.00513418168143027	AT5G61340	--	GO:0016020,membrane;	--	NP_001332684.1 transmembrane protein [Arabidopsis thaliana]	29	22	27	8
AT5G61930	no change	-0.00451745080611162	-0.6071085803872984	AT5G61930	--	GO:0003723,RNA binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_001119475.1 APO RNA-binding protein (DUF794) [Arabidopsis thaliana]	30	21	18	5
AT5G61980	no change	0.00980943337065332	-0.2357730831267656	AT5G61980	--	GO:0005096,GTPase activator activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0007010,cytoskeleton organization; GO:0030139,endocytic vesicle; GO:0035618,root hair; GO:0046872,metal ion binding; GO:0048768,root hair cell tip growth; GO:0050790,regulation of catalytic activity;	ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein; K12489;	NP_201004.2 ARF-GAP domain 1 [Arabidopsis thaliana]	196	63	70	69
AT5G62050	no change	-0.5723773836695039	0.29179476900834406	AT5G62050	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0032977,membrane insertase activity; GO:0032979,protein insertion into mitochondrial inner membrane from matrix; GO:0051205,protein insertion into membrane; GO:0090150,establishment of protein localization to membrane;	yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase; K03217;	NP_201011.1 inner membrane OXA1-like protein [Arabidopsis thaliana]	66	70	79	35
AT5G62140	no change	0.5311301360105494	-0.925970517742576	AT5G62140	--	GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_201020.1 ATP-dependent Clp protease ATP-binding subunit [Arabidopsis thaliana]	60	53	20	19
AT5G62170	no change	0.4473202161123777	-0.21503794799175724	AT5G62170	--	--	--	NP_201023.1 LOW protein: M-phase inducer phosphatase-like protein [Arabidopsis thaliana]	36	40	21	22
AT5G62180	no change	0.1890716199581753	0.2996676017858565	AT5G62180	--	GO:0016787,hydrolase activity; GO:0043722,4-hydroxyphenylacetate decarboxylase activity;	--	NP_201024.1 carboxyesterase 20 [Arabidopsis thaliana]	21	15	21	9
AT5G62360	no change	-0.6683103022549852	-0.279880180912467	AT5G62360	--	GO:0004857,enzyme inhibitor activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009827,plant-type cell wall modification; GO:0043086,negative regulation of catalytic activity;	--	NP_201042.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]	573	431	309	236
AT5G62390	no change	0.2587376424093637	-0.3919284037635452	AT5G62390	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0034605,cellular response to heat; GO:0034620,cellular response to unfolded protein; GO:0070417,cellular response to cold;	--	NP_201045.1 BCL-2-associated athanogene 7 [Arabidopsis thaliana]	603	624	339	281
AT5G62520	no change	0.12356923158519108	-0.5604658603974643	AT5G62520	--	GO:0003950,NAD+ ADP-ribosyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009651,response to salt stress; GO:0016363,nuclear matrix; GO:0071456,cellular response to hypoxia; GO:0072593,reactive oxygen species metabolic process;	--	NP_201058.1 similar to RCD one 5 [Arabidopsis thaliana]	15	6	4	5
AT5G62530	no change	0.5918937158121071	0.19369222108864936	AT5G62530	--	GO:0003842,1-pyrroline-5-carboxylate dehydrogenase activity; GO:0004029,aldehyde dehydrogenase (NAD+) activity; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006560,proline metabolic process; GO:0008270,zinc ion binding; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0010133,proline catabolic process to glutamate; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0050897,cobalt ion binding; GO:0072593,reactive oxygen species metabolic process;	E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]; K00294;	NP_568955.1 aldehyde dehydrogenase 12A1 [Arabidopsis thaliana]	318	348	288	220
AT5G62920	no change	0.8218487248270334	-0.24245839052916865	AT5G62920	--	GO:0000156,phosphorelay response regulator activity; GO:0000160,phosphorelay signal transduction system; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009735,response to cytokinin; GO:0009736,cytokinin-activated signaling pathway;	ARR-A; two-component response regulator ARR-A family; K14492;	NP_201097.1 response regulator 6 [Arabidopsis thaliana]	31	20	20	9
AT5G63010	no change	-0.5200230023543372	0.5593451269525455	AT5G63010	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0017183,peptidyl-diphthamide biosynthetic process from peptidyl-histidine; GO:0061685,diphthine methylesterase activity; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	--	NP_201106.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	21	18	11	25
AT5G63020	no change	0.7891105402304467	-0.1312491505722213	AT5G63020	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0043531,ADP binding;	--	NP_201107.2 Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]	41	35	21	24
AT5G63300	no change	-0.08930350641539822	0.06148690452299073	AT5G63300	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex;	--	NP_201135.2 Ribosomal protein S21 family protein [Arabidopsis thaliana]	8	10	4	8
AT5G63375	no change	-0.77084198226074	0.489914014722622	AT5G63375	--	--	--	NP_001331511.1 hypothetical protein AT5G63375 [Arabidopsis thaliana]	10	3	8	4
AT5G63480	no change	0.5287684555636696	0.5010893061096342	AT5G63480	--	GO:0005634,nucleus; GO:0016592,mediator complex;	--	NP_001332538.1 mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]	18	19	10	23
AT5G63530	no change	0.29010027809789307	-0.06632937011508193	AT5G63530	--	GO:0046872,metal ion binding; GO:0046914,transition metal ion binding; GO:0046916,cellular transition metal ion homeostasis;	--	NP_568974.1 farnesylated protein 3 [Arabidopsis thaliana]	189	231	134	131
AT5G63640	no change	-0.3038685120083884	-0.08377100638670407	AT5G63640	--	GO:0005737,cytoplasm; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding; GO:0043130,ubiquitin binding; GO:0043328,protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway;	--	NP_001331835.1 ENTH/VHS/GAT family protein [Arabidopsis thaliana]	51	51	47	19
AT5G63650	no change	0.4222902909997824	-0.3543392770594993	AT5G63650	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0006970,response to osmotic stress; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1]; K14498;	NP_201170.1 SNF1-related protein kinase 2.5 [Arabidopsis thaliana]	226	163	112	88
AT5G63790	no change	-0.328583772385509	0.6607958594804302	AT5G63790	NAC	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0019760,glucosinolate metabolic process; GO:0071456,cellular response to hypoxia;	--	NP_201184.2 NAC domain containing protein 102 [Arabidopsis thaliana]	52	50	55	51
AT5G63800	no change	-0.16973098816050325	0.07139975048712342	AT5G63800	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0009827,plant-type cell wall modification; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast; GO:0048354,mucilage biosynthetic process involved in seed coat development;	--	NP_568978.2 Glycosyl hydrolase family 35 protein [Arabidopsis thaliana]	342	372	277	222
AT5G64150	no change	0.6932525747066921	-0.2912182981080453	AT5G64150	--	GO:0003676,nucleic acid binding; GO:0005515,protein binding; GO:0006479,protein methylation; GO:0008168,methyltransferase activity; GO:0008276,protein methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0019538,protein metabolic process; GO:0032259,methylation; GO:0043414,macromolecule methylation;	--	NP_201220.1 RNA methyltransferase family protein [Arabidopsis thaliana]	67	32	32	21
AT5G64160	no change	0.9608152392586946	0.5136176319226495	AT5G64160	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_568986.1 plant/protein [Arabidopsis thaliana]	40	58	53	41
AT5G64250	no change	0.1111826454119308	0.31628286290842295	AT5G64250	--	GO:0005829,cytosol; GO:0009610,response to symbiotic fungus; GO:0018580,nitronate monooxygenase activity; GO:0046686,response to cadmium ion; GO:0051213,dioxygenase activity;	--	NP_568988.2 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	79	64	58	58
AT5G64270	no change	-0.9303147644967396	0.1408573260145938	AT5G64270	--	GO:0000245,spliceosomal complex assembly; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005686,U2 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0009536,plastid; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3B1, SAP155; splicing factor 3B subunit 1; K12828;	NP_201232.1 splicing factor [Arabidopsis thaliana]	1232	999	976	660
AT5G64330	no change	0.06920282062277076	-0.18553779655576455	AT5G64330	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009638,phototropism; GO:0009785,blue light signaling pathway; GO:0016020,membrane; GO:0016567,protein ubiquitination;	--	NP_568989.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	231	221	166	101
AT5G64430	no change	-0.9798980219848884	0.3645742585922797	AT5G64430	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0009536,plastid; GO:0009941,chloroplast envelope;	--	NP_201248.1 Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]	354	206	240	226
AT5G64570	no change	-0.941104014749882	-0.3829300908150363	AT5G64570	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0009627,systemic acquired resistance; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; GO:0048046,apoplast;	XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K15920;	NP_201262.1 beta-D-xylosidase 4 [Arabidopsis thaliana]	1506	1581	882	693
AT5G64960	no change	0.36557281942838216	0.44600261753066434	AT5G64960	--	GO:0000166,nucleotide binding; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004693,cyclin-dependent protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006397,mRNA processing; GO:0006468,protein phosphorylation; GO:0008353,RNA polymerase II CTD heptapeptide repeat kinase activity; GO:0009414,response to water deprivation; GO:0009615,response to virus; GO:0009908,flower development; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016604,nuclear body; GO:0016740,transferase activity; GO:0032968,positive regulation of transcription elongation by RNA polymerase II; GO:0048440,carpel development; GO:0050792,regulation of viral process; GO:0051726,regulation of cell cycle; GO:0070816,phosphorylation of RNA polymerase II C-terminal domain; GO:0106310,protein serine kinase activity;	--	NP_001078797.1 cyclin dependent kinase group C2 [Arabidopsis thaliana]	363	387	392	290
AT5G64970	no change	0.8967772916296463	-0.5087238976698433	AT5G64970	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_201302.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	14	17	5	9
AT5G65480	no change	0.4468081904767609	-0.8698036577135368	AT5G65480	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0035091,phosphatidylinositol binding;	--	NP_201351.1 hypothetical protein AT5G65480 [Arabidopsis thaliana]	43	39	24	7
AT5G65490	no change	-0.20192016144589023	0.03559388806072212	AT5G65490	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_201352.1 suppressor-like protein [Arabidopsis thaliana]	83	81	65	47
AT5G65520	no change	-0.153149657988375	0.1741176503324004	AT5G65520	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_201355.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	23	32	20	21
AT5G65620	no change	-0.4313604854071135	-0.0997778020197682	AT5G65620	--	GO:0004222,metalloendopeptidase activity; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006508,proteolysis; GO:0006518,peptide metabolic process; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_001332654.1 Zincin-like metalloproteases family protein [Arabidopsis thaliana]	1051	985	689	567
AT5G65630	no change	-0.9314137696446392	0.09722392670175618	AT5G65630	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009294,DNA-mediated transformation;	--	NP_201366.3 global transcription factor group E7 [Arabidopsis thaliana]	103	79	76	53
AT5G65710	no change	-0.5710631682445577	-0.295572765470021	AT5G65710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010102,lateral root morphogenesis; GO:0010468,regulation of gene expression; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050829,defense response to Gram-negative bacterium; GO:0060866,leaf abscission; GO:0106310,protein serine kinase activity;	--	NP_201372.2 HAESA-like 2 [Arabidopsis thaliana]	166	101	73	68
AT5G65830	no change	-0.3746848886533757	0.666548861371817	AT5G65830	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_201384.1 receptor like protein 57 [Arabidopsis thaliana]	18	11	11	18
AT5G66000	no change	-0.652481352459611	-0.13239518302413206	AT5G66000	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_569024.1 hypothetical protein AT5G66000 [Arabidopsis thaliana]	8	13	13	1
AT5G66040	no change	-0.4448193368847382	0.01830512876417403	AT5G66040	--	GO:0004792,thiosulfate sulfurtransferase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity;	--	NP_851278.1 sulfurtransferase protein 16 [Arabidopsis thaliana]	30	36	27	18
AT5G66055	no change	-0.2754633725109813	0.2724391207709413	AT5G66055	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0140693,molecular condensate scaffold activity;	--	NP_569027.2 ankyrin repeat protein [Arabidopsis thaliana]	139	95	96	88
AT5G66180	no change	-0.530426225240975	0.5567062081198297	AT5G66180	--	GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_201419.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	18	19	14	21
AT5G66190	no change	0.0064987692332475	0.1605619430224567	AT5G66190	--	GO:0004324,ferredoxin-NADP+ reductase activity; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009767,photosynthetic electron transport chain; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0045157,electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast; GO:0098807,chloroplast thylakoid membrane protein complex;	petH; ferredoxin--NADP+ reductase [EC:1.18.1.2]; K02641;	NP_001078805.1 ferredoxin-NADP[+]-oxidoreductase 1 [Arabidopsis thaliana]	1462	1406	1145	972
AT5G66280	no change	-0.5327326464280844	-0.20513108586372775	AT5G66280	--	GO:0005515,protein binding; GO:0008446,GDP-mannose 4,6-dehydratase activity; GO:0009536,plastid; GO:0016829,lyase activity; GO:0019673,GDP-mannose metabolic process; GO:0042350,GDP-L-fucose biosynthetic process; GO:0042351,'de novo' GDP-L-fucose biosynthetic process;	gmd, GMDS; GDPmannose 4,6-dehydratase [EC:4.2.1.47]; K01711;	NP_201429.1 GDP-D-mannose 4,6-dehydratase 1 [Arabidopsis thaliana]	33	19	14	15
AT5G66330	no change	-0.47064922791790886	-0.03553584310366674	AT5G66330	--	GO:0005515,protein binding;	--	NP_201434.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	119	106	80	65
AT5G66450	no change	-0.5369406366997481	0.4300629299071783	AT5G66450	--	GO:0005789,endoplasmic reticulum membrane; GO:0006487,protein N-linked glycosylation; GO:0006651,diacylglycerol biosynthetic process; GO:0008195,phosphatidate phosphatase activity; GO:0008610,lipid biosynthetic process; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0044238,primary metabolic process; GO:0044249,cellular biosynthetic process; GO:0047874,dolichyldiphosphatase activity; GO:1901576,organic substance biosynthetic process;	--	NP_001078807.1 Phosphatidic acid phosphatase (PAP2) family protein [Arabidopsis thaliana]	31	29	27	26
AT5G66530	no change	-0.8300598282905443	-0.29525408530211544	AT5G66530	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016853,isomerase activity; GO:0030246,carbohydrate binding; GO:0047938,glucose-6-phosphate 1-epimerase activity; GO:0048046,apoplast;	E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]; K01792;	NP_001190635.1 Galactose mutarotase-like superfamily protein [Arabidopsis thaliana]	166	191	82	107
AT5G66520	no change	-0.4777182092022375	-0.4713157082766586	AT5G66520	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0016554,cytidine to uridine editing; GO:1900865,chloroplast RNA modification;	--	NP_201453.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	18	9	9	4
AT5G66560	no change	-0.411009698315605	0.2867508983818338	AT5G66560	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_201457.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	192	176	186	115
AT5G66570	no change	-0.8970423139159195	0.15123692374316752	AT5G66570	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010205,photoinhibition; GO:0010207,photosystem II assembly; GO:0010242,oxygen evolving activity; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019684,photosynthesis, light reaction; GO:0031977,thylakoid lumen; GO:0035304,regulation of protein dephosphorylation; GO:0042549,photosystem II stabilization; GO:0048046,apoplast; GO:0055035,plastid thylakoid membrane;	psbO; photosystem II oxygen-evolving enhancer protein 1; K02716;	NP_201458.1 PS II oxygen-evolving complex 1 [Arabidopsis thaliana]	19951	15404	13975	11760
AT5G66600	no change	0.8809810344328874	0.4529263337981109	AT5G66600	--	--	--	NP_001330057.1 electron transporter, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]	17	19	14	18
AT5G67100	no change	0.24429560943110953	-0.6254761581095027	AT5G67100	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003688,DNA replication origin binding; GO:0003697,single-stranded DNA binding; GO:0003887,DNA-directed DNA polymerase activity; GO:0003896,DNA primase activity; GO:0005634,nucleus; GO:0005658,alpha DNA polymerase:primase complex; GO:0006260,DNA replication; GO:0006269,DNA replication, synthesis of RNA primer; GO:0006270,DNA replication initiation; GO:0006272,leading strand elongation; GO:0006273,lagging strand elongation; GO:0009965,leaf morphogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:1902975,mitotic DNA replication initiation;	POLA1; DNA polymerase alpha subunit A [EC:2.7.7.7]; K02320;	NP_001331725.1 DNA-directed DNA polymerase [Arabidopsis thaliana]	148	141	74	51
AT5G67110	no change	0.30211681761863063	0.11181330256555552	AT5G67110	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010047,fruit dehiscence; GO:0046983,protein dimerization activity;	--	NP_201512.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	47	56	40	34
AT5G67160	no change	-0.6270165154205946	0.223801188673205	AT5G67160	--	GO:0006952,defense response; GO:0009617,response to bacterium; GO:0009697,salicylic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:1900150,regulation of defense response to fungus; GO:1900424,regulation of defense response to bacterium;	--	NP_201517.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	104	79	75	65
AT5G67180	no change	0.3652321806894385	-0.09497376073298212	AT5G67180	AP2	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway;	--	NP_201519.1 target of early activation tagged (EAT) 3 [Arabidopsis thaliana]	42	35	18	28
AT5G67230	no change	0.47025097942086774	0.4512687676965697	AT5G67230	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0009834,plant-type secondary cell wall biogenesis; GO:0010417,glucuronoxylan biosynthetic process; GO:0015018,galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042285,xylosyltransferase activity; GO:0071555,cell wall organization;	--	NP_201524.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	40	33	27	37
AT5G67420	no change	-0.4064735837947071	0.14221283212539357	AT5G67420	LBD	GO:0000976,transcription cis-regulatory region binding; GO:0006807,nitrogen compound metabolic process; GO:0010468,regulation of gene expression; GO:0060776,simple leaf morphogenesis;	--	NP_001318897.1 LOB domain-containing protein 37 [Arabidopsis thaliana]	40	38	37	21
AT5G67600	no change	0.6381270731330108	0.00962928752612014	AT5G67600	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009554,megasporogenesis; GO:0016020,membrane; GO:0042803,protein homodimerization activity; GO:0043621,protein self-association;	--	NP_569052.1 cysteine-rich TM module stress tolerance protein [Arabidopsis thaliana]	120	83	85	51