ID	TEstatus	log2FC_TE	pvalue	p.adjust	Name	TF	GO	KEGG	Nr	wt_1	wt_2	h3_1	h3_2
AT1G64790	down	-6.013126872578892	8.845240655164248e-186	2.2511137467393006e-182	AT1G64790	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009627,systemic acquired resistance; GO:0009682,induced systemic resistance; GO:0019887,protein kinase regulator activity; GO:0019901,protein kinase binding; GO:0033674,positive regulation of kinase activity; GO:0034198,cellular response to amino acid starvation; GO:0042742,defense response to bacterium; GO:0043022,ribosome binding; GO:0045087,innate immune response;	--	NP_001322207.1 ILITYHIA [Arabidopsis thaliana]	731	744	630	510
AT3G28900	down	-7.200276632159319	6.045667871075857e-116	7.69311236594403e-113	AT3G28900	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042254,ribosome biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L34e, RPL34; large subunit ribosomal protein L34e; K02915;	NP_189532.1 Ribosomal protein L34e superfamily protein [Arabidopsis thaliana]	290	263	277	188
AT1G74550	down	-3.170062872113195	2.0608076921863752e-32	1.748251858871442e-29	AT1G74550	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity;	CYP98A9; cytochrome P450 family 98 subfamily A polypeptide 9 [EC:1.14.13.-]; K23662;	NP_177595.1 cytochrome P450, family 98, subfamily A, polypeptide 9 [Arabidopsis thaliana]	458	372	113	83
AT4G23800	down	-3.074612387211685	7.459396622919407e-27	4.746041101332472e-24	AT4G23800	--	GO:0000793,condensed chromosome; GO:0000794,condensed nuclear chromosome; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_194111.1 HMG (high mobility group) box protein [Arabidopsis thaliana]	475	404	276	230
AT5G44180	down	-5.403629606061854	4.6804750134315336e-24	2.38236178183665e-21	AT5G44180	HB-other	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0031010,ISWI-type complex; GO:0043229,intracellular organelle; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001318738.1 Homeodomain-like transcriptional regulator [Arabidopsis thaliana]	161	134	100	87
AT1G12840	down	-1.5666369116776793	1.319531121942205e-19	5.59701117557152e-17	AT1G12840	--	GO:0000221,vacuolar proton-transporting V-type ATPase, V1 domain; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009826,unidimensional cell growth; GO:0015078,proton transmembrane transporter activity; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C; K02148;	NP_563916.1 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) [Arabidopsis thaliana]	894	778	561	403
AT5G46700	down	-3.1039366902318877	2.3003274400748845e-17	8.36333333570083e-15	AT5G46700	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009554,megasporogenesis; GO:0009734,auxin-activated signaling pathway; GO:0009933,meristem structural organization; GO:0009934,regulation of meristem structural organization; GO:0009956,radial pattern formation; GO:0010015,root morphogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_199482.1 Tetraspanin family protein [Arabidopsis thaliana]	154	174	81	86
AT2G17695	down	-6.435321374441748	5.981237852432756e-16	1.9027812918051705e-13	AT2G17695	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope;	--	NP_001118341.1 outer envelope protein [Arabidopsis thaliana]	30	45	25	19
AT1G21160	up	3.3256158158740106	4.214093103130005e-15	1.1916518830517625e-12	AT1G21160	--	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process;	EIF5B; translation initiation factor 5B; K03243;	NP_173540.2 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]	37	16	296	222
AT3G10720	down	-2.572524854546513	6.282498432577117e-14	1.5988958510908762e-11	AT3G10720	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_187683.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	187	171	98	92
AT1G03140	up	3.729770365680059	1.4206440862555306e-13	3.2868538177457494e-11	AT1G03140	--	GO:0000350,generation of catalytic spliceosome for second transesterification step; GO:0000380,alternative mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071021,U2-type post-spliceosomal complex; GO:0110165,cellular anatomical entity;	PRPF18, PRP18; pre-mRNA-splicing factor 18; K12817;	NP_563676.1 splicing factor Prp18 family protein [Arabidopsis thaliana]	188	172	165	138
AT5G48880	no change	-1.4911538913054685	6.740350369633102e-13	1.429515974226354e-10	AT5G48880	--	GO:0003988,acetyl-CoA C-acyltransferase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0006635,fatty acid beta-oxidation; GO:0010124,phenylacetate catabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0031408,oxylipin biosynthetic process;	ACAA1; acetyl-CoA acyltransferase 1 [EC:2.3.1.16]; K07513;	NP_851157.1 peroxisomal 3-keto-acyl-CoA thiolase 2 [Arabidopsis thaliana]	1485	1360	616	467
AT1G14650	down	-3.436389480566657	7.724384320296391e-13	1.512196776550332e-10	AT1G14650	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005684,U2-type spliceosomal complex; GO:0005686,U2 snRNP; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0045292,mRNA cis splicing, via spliceosome; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3A1, SAP114; splicing factor 3A subunit 1; K12825;	AAF63169.1 T5E21.13 [Arabidopsis thaliana]	319	278	290	177
AT5G37500	down	-4.2626336070841795	1.0159146594444977e-12	1.8467877202044614e-10	AT5G37500	--	GO:0005216,ion channel activity; GO:0005244,voltage-gated ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005267,potassium channel activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009753,response to jasmonic acid; GO:0015075,ion transmembrane transporter activity; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0034765,regulation of ion transmembrane transport; GO:0051592,response to calcium ion; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport;	--	NP_001332118.1 gated outwardly-rectifying K+ channel [Arabidopsis thaliana]	67	59	68	31
AT3G61630	up	3.037714462609456	5.082246598930265e-12	8.622878396185014e-10	AT3G61630	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development; GO:0048825,cotyledon development;	--	NP_191722.1 cytokinin response factor 6 [Arabidopsis thaliana]	29	20	156	92
AT1G23400	down	-2.153486596100449	5.449678704328905e-12	8.668395189073163e-10	AT1G23400	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:1990904,ribonucleoprotein complex;	--	NP_173754.2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]	156	165	151	107
AT5G51180	down	-4.025879642662801	5.815352145794851e-12	8.70592424179288e-10	AT5G51180	--	GO:0003674,molecular_function; GO:0044255,cellular lipid metabolic process;	--	NP_568754.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	60	110	53	49
AT1G07510	no change	-1.4148179528048357	1.0340560006606842e-11	1.4391182361869363e-9	AT1G07510	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005745,m-AAA complex; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0034982,mitochondrial protein processing; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	AFG3; AFG3 family protein [EC:3.4.24.-]; K08956;	NP_172231.2 FTSH protease 10 [Arabidopsis thaliana]	466	433	309	235
AT4G00170	down	-4.246497332891658	1.0743908246582236e-11	1.4391182361869363e-9	AT4G00170	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization;	--	NP_567153.1 Plant VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana]	47	69	28	43
AT1G49140	down	-3.2956451852895396	3.1232702415863063e-11	3.9743613824185755e-9	AT1G49140	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFB10; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10; K03966;	NP_001321329.1 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-B-like protein (Complex I subunit NDUFS6) [Arabidopsis thaliana]	74	92	43	48
AT1G07770	no change	1.3547151538576023	7.341747156903184e-11	8.897498340151716e-9	AT1G07770	--	GO:0000325,plant-type vacuole; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S15Ae, RPS15A; small subunit ribosomal protein S15Ae; K02957;	NP_001318947.1 ribosomal protein S15A [Arabidopsis thaliana]	524	465	729	576
AT3G23490	up	3.3935799704266536	2.1983926507420022e-10	2.5431405891538164e-8	AT3G23490	--	GO:0003677,DNA binding; GO:0005829,cytosol; GO:0008824,cyanate hydratase activity; GO:0009439,cyanate metabolic process; GO:0009440,cyanate catabolic process; GO:0009651,response to salt stress; GO:0016020,membrane; GO:0016829,lyase activity; GO:0042802,identical protein binding;	cynS; cyanate lyase [EC:4.2.1.104]; K01725;	NP_001327887.1 cyanase [Arabidopsis thaliana]	107	133	126	62
AT1G16890	no change	1.1394305490080927	5.907626872722084e-10	6.536917561338132e-8	AT1G16890	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006301,postreplication repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010039,response to iron ion; GO:0010053,root epidermal cell differentiation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031372,UBC13-MMS2 complex; GO:0061631,ubiquitin conjugating enzyme activity; GO:0070534,protein K63-linked ubiquitination;	UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]; K10580;	NP_001185017.1 ubiquitin-conjugating enzyme 36 [Arabidopsis thaliana]	1739	1541	1710	1426
AT4G04460	down	-1.613485993275555	1.9854798412751582e-9	2.105435915018866e-7	AT4G04460	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0006629,lipid metabolic process; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; GO:0046686,response to cadmium ion;	--	NP_001190671.1 Saposin-like aspartyl protease family protein [Arabidopsis thaliana]	4491	3947	1687	1234
AT2G17880	down	-1.7506641124267484	5.7774341579468065e-9	5.881427972789848e-7	AT2G17880	--	GO:0009507,chloroplast;	--	NP_179378.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	467	412	211	157
AT2G21340	down	-2.345786140128063	6.6715779747437105e-9	6.530448440662593e-7	AT2G21340	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_565509.4 MATE efflux family protein [Arabidopsis thaliana]	127	115	83	49
AT4G26300	down	-1.5674582492241382	8.71751672457817e-9	8.217066690389423e-7	AT4G26300	--	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004814,arginine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006420,arginyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0016874,ligase activity; GO:0048608,reproductive structure development;	RARS, argS; arginyl-tRNA synthetase [EC:6.1.1.19]; K01887;	NP_194360.1 Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana]	424	301	343	330
AT4G34560	down	-10.104440060478137	1.1269205299716081e-8	1.0242902674206222e-6	AT4G34560	--	GO:0016020,membrane;	--	NP_195182.2 transmembrane protein [Arabidopsis thaliana]	18	21	3	7
AT3G61070	down	-1.7750478161534264	1.513234122288891e-8	1.3279933935259406e-6	AT3G61070	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0005829,cytosol; GO:0007031,peroxisome organization; GO:0007623,circadian rhythm; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size;	--	NP_001078322.1 peroxin 11E [Arabidopsis thaliana]	180	235	147	107
AT3G63130	no change	1.2530516643427003	3.011072825736557e-8	2.5543934471665124e-6	AT3G63130	--	GO:0000911,cytokinesis by cell plate formation; GO:0005096,GTPase activator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0006606,protein import into nucleus; GO:0009504,cell plate; GO:0009524,phragmoplast; GO:0016020,membrane; GO:0031965,nuclear membrane; GO:0032153,cell division site; GO:0050790,regulation of catalytic activity;	RANGAP1; Ran GTPase-activating protein 1; K14319;	NP_001190166.1 RAN GTPase activating protein 1 [Arabidopsis thaliana]	358	318	267	222
AT3G46640	up	2.2195213436220804	4.4549617771611895e-8	3.657379910604912e-6	AT3G46640	G2-like	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0010468,regulation of gene expression; GO:0042752,regulation of circadian rhythm; GO:0042753,positive regulation of circadian rhythm; GO:0048511,rhythmic process;	--	NP_001030823.1 Homeodomain-like superfamily protein [Arabidopsis thaliana]	160	147	127	110
AT3G15040	up	3.8965326936121087	7.717224234692991e-8	6.13760489915427e-6	AT3G15040	--	GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0010150,leaf senescence;	--	KAG7625290.1 Senescence regulator S40 [Arabidopsis thaliana x Arabidopsis arenosa]	130	95	103	59
AT1G65960	no change	-1.149604828128454	9.247886738992173e-8	7.1320823487076e-6	AT1G65960	--	GO:0003824,catalytic activity; GO:0004351,glutamate decarboxylase activity; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006536,glutamate metabolic process; GO:0006538,glutamate catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0016831,carboxy-lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030170,pyridoxal phosphate binding;	E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase [EC:4.1.1.15]; K01580;	NP_001319328.1 glutamate decarboxylase 2 [Arabidopsis thaliana]	1876	1804	947	818
AT3G20300	up	5.131013766203324	1.0963985448199999e-7	8.20686557813794e-6	AT3G20300	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_566658.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]	29	19	25	20
AT2G42690	down	-1.5385959047909843	1.2040760227156402e-7	8.755352793746584e-6	AT2G42690	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0009650,UV protection; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0071493,cellular response to UV-B;	--	NP_181797.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	285	217	146	94
AT5G46280	up	2.9837984741192685	2.3406391063046194e-7	1.65470181265146e-5	AT5G46280	--	GO:0000166,nucleotide binding; GO:0000347,THO complex; GO:0000727,double-strand break repair via break-induced replication; GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003697,single-stranded DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006270,DNA replication initiation; GO:0006271,DNA strand elongation involved in DNA replication; GO:0007049,cell cycle; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0042555,MCM complex; GO:1902975,mitotic DNA replication initiation;	MCM3; DNA replication licensing factor MCM3 [EC:3.6.4.12]; K02541;	NP_199440.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	342	297	223	111
AT5G16930	up	2.502042628765514	2.569100486741609e-7	1.7671245239884848e-5	AT5G16930	--	GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0016887,ATP hydrolysis activity;	--	NP_197195.2 AAA-type ATPase family protein [Arabidopsis thaliana]	68	65	79	67
AT4G13170	no change	1.1647454930673138	3.147798665592138e-7	2.1081967378768396e-5	AT4G13170	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0015934,large ribosomal subunit; GO:0017148,negative regulation of translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae; K02872;	NP_193053.1 Ribosomal protein L13 family protein [Arabidopsis thaliana]	418	302	471	390
AT2G19680	down	-2.5994639824678956	4.040863134673702e-7	2.636922225062711e-5	AT2G19680	--	GO:0000276,mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); GO:0005739,mitochondrion; GO:0006811,ion transport; GO:0015078,proton transmembrane transporter activity; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045263,proton-transporting ATP synthase complex, coupling factor F(o); GO:1902600,proton transmembrane transport;	ATPeFG, ATP5L, ATP20; F-type H+-transporting ATPase subunit g; K02140;	NP_001077919.1 Mitochondrial ATP synthase subunit G protein [Arabidopsis thaliana]	72	72	38	31
AT2G31890	down	-2.2916366562441395	4.330880963522914e-7	2.7555230130414534e-5	AT2G31890	--	GO:0000963,mitochondrial RNA processing; GO:0003723,RNA binding; GO:0005759,mitochondrial matrix; GO:0006364,rRNA processing; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0035770,ribonucleoprotein granule; GO:0042644,chloroplast nucleoid; GO:0042646,plastid nucleoid; GO:0044528,regulation of mitochondrial mRNA stability; GO:1901259,chloroplast rRNA processing;	--	NP_850176.1 RAP [Arabidopsis thaliana]	99	96	43	39
AT5G51950	down	-1.8876464379039204	4.777305452797408e-7	2.9654249700900986e-5	AT5G51950	--	GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding;	--	NP_200008.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]	1055	852	459	318
AT2G47980	down	-1.8159124500695376	5.050455464530641e-7	3.0603355136263054e-5	AT2G47980	--	GO:0000278,mitotic cell cycle; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0007049,cell cycle; GO:0007059,chromosome segregation; GO:0007062,sister chromatid cohesion; GO:0008278,cohesin complex; GO:0051301,cell division; GO:0051455,monopolar spindle attachment to meiosis I kinetochore; GO:0051754,meiotic sister chromatid cohesion, centromeric;	STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2; K06671;	NP_566119.1 sister-chromatid cohesion protein 3 [Arabidopsis thaliana]	401	360	304	193
AT3G56960	down	-4.110845597044916	7.759567607377912e-7	4.592581293203904e-5	AT3G56960	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0007164,establishment of tissue polarity; GO:0009827,plant-type cell wall modification; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016307,phosphatidylinositol phosphate kinase activity; GO:0016308,1-phosphatidylinositol-4-phosphate 5-kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0044238,primary metabolic process; GO:0046488,phosphatidylinositol metabolic process; GO:0046854,phosphatidylinositol phosphate biosynthetic process; GO:0071704,organic substance metabolic process; GO:0090406,pollen tube;	PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68]; K00889;	KAG7634709.1 Phosphatidylinositol-4-phosphate 5-kinase core [Arabidopsis suecica]	36	38	9	22
AT3G13060	down	-1.7487597140783446	9.662913520128905e-7	5.589117024710923e-5	AT3G13060	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_001327857.1 evolutionarily conserved C-terminal region 5 [Arabidopsis thaliana]	149	136	78	70
AT5G40440	up	1.7339914183674896	1.1433386134815e-6	6.466215047356484e-5	AT5G40440	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0004708,MAP kinase kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009864,induced systemic resistance, jasmonic acid mediated signaling pathway; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0080027,response to herbivore; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	MKK3; mitogen-activated protein kinase kinase 3 [EC:2.7.12.2]; K20607;	NP_001332250.1 mitogen-activated protein kinase kinase 3 [Arabidopsis thaliana]	163	127	86	101
AT3G16250	up	2.016329358387927	1.2712165016586382e-6	7.033143471133118e-5	AT3G16250	--	GO:0005829,cytosol; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0140647,P450-containing electron transport chain;	--	NP_188246.1 NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]	84	89	102	82
AT4G09010	no change	-1.3686375261322672	1.440569863348898e-6	7.80053255792116e-5	AT4G09010	--	GO:0000302,response to reactive oxygen species; GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0031977,thylakoid lumen; GO:0034599,cellular response to oxidative stress; GO:0042744,hydrogen peroxide catabolic process; GO:0098869,cellular oxidant detoxification;	E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11]; K00434;	NP_192640.1 ascorbate peroxidase 4 [Arabidopsis thaliana]	306	265	99	95
AT2G25800	down	-2.464512059171372	1.966728056475928e-6	1.0427756049440076e-4	AT2G25800	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation;	--	NP_180151.3 elongation factor Ts (DUF810) [Arabidopsis thaliana]	341	304	197	138
AT2G37230	up	2.583575127830372	2.2212776301034144e-6	1.1359760300634613e-4	AT2G37230	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009409,response to cold; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane;	--	NP_181260.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	421	352	321	297
AT3G03910	down	-2.6174677483413276	2.231780019771044e-6	1.1359760300634613e-4	AT3G03910	--	GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0051171,regulation of nitrogen compound metabolic process;	GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261;	NP_187041.1 glutamate dehydrogenase 3 [Arabidopsis thaliana]	59	70	51	23
AT1G54040	up	3.0545304879011166	2.6147069311608935e-6	1.304790027412642e-4	AT1G54040	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0042742,defense response to bacterium; GO:0050790,regulation of catalytic activity; GO:0080028,nitrile biosynthetic process;	--	NP_175806.3 epithiospecifier protein [Arabidopsis thaliana]	30	43	86	45
AT5G58060	down	-1.7710417117548074	2.9694040797499206e-6	1.453294881339144e-4	AT5G58060	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006906,vesicle fusion; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0031982,vesicle;	YKT6; synaptobrevin homolog YKT6; K08516;	NP_001154785.1 SNARE-like superfamily protein [Arabidopsis thaliana]	142	151	64	67
AT1G71440	down	-2.105371705724718	3.106645938559153e-6	1.4917762101194425e-4	AT1G71440	--	GO:0000226,microtubule cytoskeleton organization; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0007021,tubulin complex assembly; GO:0007023,post-chaperonin tubulin folding pathway; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0043014,alpha-tubulin binding;	--	NP_565017.1 tubulin folding cofactor E / Pfifferling (PFI) [Arabidopsis thaliana]	121	90	70	43
AT1G74540	down	-1.7752532295581025	4.461651320085631e-6	2.102759742521839e-4	AT1G74540	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072532,tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity; GO:0072550,triferuloylspermidine meta-hydroxylase activity; GO:0072551,diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0072552,monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0080088,spermidine hydroxycinnamate conjugate biosynthetic process;	CYP98A8; cytochrome P450 family 98 subfamily A polypeptide 8 [EC:1.14.13.-]; K15506;	NP_177594.1 cytochrome P450, family 98, subfamily A, polypeptide 8 [Arabidopsis thaliana]	717	530	226	187
AT2G23120	down	-2.4495272800676355	4.629627984221018e-6	2.1422551308804532e-4	AT2G23120	--	GO:0005773,vacuole; GO:0005829,cytosol;	--	NP_565548.1 Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana]	280	274	140	101
AT2G32280	up	3.2406316888103746	5.177508886015669e-6	2.352992877662478e-4	AT2G32280	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009855,determination of bilateral symmetry; GO:0010087,phloem or xylem histogenesis; GO:0010252,auxin homeostasis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0016020,membrane; GO:0048366,leaf development; GO:0048825,cotyledon development; GO:0051302,regulation of cell division;	--	NP_001323429.1 GPI inositol-deacylase C, putative (DUF1218) [Arabidopsis thaliana]	43	25	22	26
AT1G62750	down	-1.633795236084378	6.184520425115844e-6	2.7613341196350565e-4	AT1G62750	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005524,ATP binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009791,post-embryonic development; GO:0009845,seed germination; GO:0009941,chloroplast envelope; GO:0032543,mitochondrial translation; GO:0032790,ribosome disassembly; GO:0048046,apoplast;	--	NP_564801.1 Translation elongation factor EFG/EF2 protein [Arabidopsis thaliana]	1386	1261	561	482
AT1G15240	down	-2.029168787871275	6.7528762138453425e-6	2.963115511075241e-4	AT1G15240	--	GO:0005768,endosome; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding;	SNX13; sorting nexin-13; K17925;	NP_001319008.1 phox (PX) domain-containing protein [Arabidopsis thaliana]	88	91	49	61
AT1G77122	down	-3.2474908772050153	8.652079852400245e-6	3.732125970230275e-4	AT1G77122	--	GO:0008150,biological_process;	--	NP_849898.1 Uncharacterized protein family UPF0090 [Arabidopsis thaliana]	62	48	21	39
AT4G26600	up	2.3648265096381618	9.15369362218126e-6	3.8826917114085513e-4	AT4G26600	--	GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; GO:0070475,rRNA base methylation;	--	NP_001328282.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	84	79	122	84
AT5G58270	no change	1.352211893764486	9.352210996777263e-6	3.9018650798029736e-4	AT5G58270	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0006811,ion transport; GO:0006879,cellular iron ion homeostasis; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010288,response to lead ion; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0046686,response to cadmium ion; GO:0048364,root development; GO:0050790,regulation of catalytic activity; GO:0051276,chromosome organization; GO:0055072,iron ion homeostasis; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCB7; ATP-binding cassette, subfamily B (MDR/TAP), member 7; K05662;	NP_200635.1 ABC transporter of the mitochondrion 3 [Arabidopsis thaliana]	281	170	140	147
AT1G10490	no change	1.0516329671916456	1.00876333557098e-5	4.140810788755071e-4	AT1G10490	--	GO:0000049,tRNA binding; GO:0000154,rRNA modification; GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0008033,tRNA processing; GO:0008080,N-acetyltransferase activity; GO:0016072,rRNA metabolic process; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0034470,ncRNA processing; GO:0042274,ribosomal small subunit biogenesis; GO:0043412,macromolecule modification; GO:0044238,primary metabolic process; GO:0051391,tRNA acetylation; GO:1904812,rRNA acetylation involved in maturation of SSU-rRNA; GO:1990883,rRNA cytidine N-acetyltransferase activity;	NAT10, KRE33; N-acetyltransferase 10 [EC:2.3.1.-]; K14521;	NP_001318971.1 GNAT acetyltransferase (DUF699) [Arabidopsis thaliana]	232	193	279	224
AT2G16660	up	2.7562459841981912	1.1290455622036114e-5	4.560985644139986e-4	AT2G16660	--	GO:0016020,membrane;	--	NP_179257.1 Major facilitator superfamily protein [Arabidopsis thaliana]	564	469	715	527
AT1G70770	no change	0.81337557478057	1.1716915859252582e-5	4.6593048221559095e-4	AT1G70770	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane;	--	NP_001185367.1 transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Arabidopsis thaliana]	1611	1393	1056	782
AT5G51550	down	-1.8021680975684489	1.236780991688352e-5	4.8424732674567017e-4	AT5G51550	--	GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0048046,apoplast;	--	NP_199968.1 EXORDIUM like 3 [Arabidopsis thaliana]	542	452	259	191
AT1G80760	down	-2.789830710807154	1.2909741055045896e-5	4.978074391680577e-4	AT1G80760	--	GO:0005886,plasma membrane; GO:0015168,glycerol transmembrane transporter activity; GO:0015204,urea transmembrane transporter activity; GO:0015267,channel activity; GO:0015793,glycerol transmembrane transport; GO:0016020,membrane; GO:0035445,borate transmembrane transport; GO:0046713,borate transport; GO:0046715,active borate transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071918,urea transmembrane transport; GO:0080029,cellular response to boron-containing substance levels;	--	NP_178191.1 NOD26-like intrinsic protein 6;1 [Arabidopsis thaliana]	62	48	32	13
AT1G06670	up	3.043418950378392	1.3358453911176024e-5	5.062026542016215e-4	AT1G06670	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0032508,DNA duplex unwinding;	DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]; K14442;	NP_172152.1 nuclear DEIH-boxhelicase [Arabidopsis thaliana]	305	300	275	252
AT1G21640	down	-1.9536507703213863	1.3525257558235856e-5	5.062026542016215e-4	AT1G21640	--	GO:0000166,nucleotide binding; GO:0003951,NAD+ kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0006741,NADP biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019674,NAD metabolic process;	ppnK, NADK; NAD+ kinase [EC:2.7.1.23]; K00858;	NP_001185057.1 NAD kinase 2 [Arabidopsis thaliana]	150	120	58	57
AT5G48480	no change	-0.7389628672888374	1.791327282179928e-5	6.60714193209843e-4	AT5G48480	--	GO:0005829,cytosol;	--	NP_568698.1 Lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]	1762	1586	869	691
AT2G04380	up	1.5880268756958014	1.9361935196624097e-5	7.039446439344046e-4	AT2G04380	--	GO:0008150,biological_process;	--	NP_178519.1 hypothetical protein AT2G04380 [Arabidopsis thaliana]	73	44	184	108
AT2G39010	no change	-1.1967540292867227	2.216957691496444e-5	7.946700457547113e-4	AT2G39010	--	GO:0003729,mRNA binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009624,response to nematode; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_001324169.1 plasma membrane intrinsic protein 2E [Arabidopsis thaliana]	1115	1018	561	507
AT1G50900	down	-1.653482048201078	2.298946521104943e-5	8.126137355850111e-4	AT1G50900	--	GO:0005515,protein binding; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0090391,granum assembly;	--	NP_564580.1 Ankyrin repeat family protein [Arabidopsis thaliana]	206	149	79	52
AT3G63450	up	2.5223412902391473	2.6823607606731317e-5	9.351517994401534e-4	AT3G63450	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding;	--	NP_001190170.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	38	38	35	33
AT3G11810	up	3.946383345141392	2.7811646732013133e-5	9.56495147742884e-4	AT3G11810	--	GO:0016020,membrane;	--	NP_187787.1 transmembrane protein [Arabidopsis thaliana]	59	25	33	31
AT5G43130	up	2.042507685607063	3.077388503291876e-5	0.0010341460712745	AT5G43130	--	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0006367,transcription initiation at RNA polymerase II promoter; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0046982,protein heterodimerization activity;	TAF4; transcription initiation factor TFIID subunit 4; K03129;	NP_199127.3 TBP-associated factor 4 [Arabidopsis thaliana]	114	88	109	83
AT5G08400	up	2.0088641408680816	3.088216165692039e-5	0.0010341460712745	AT5G08400	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001031856.1 structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]	35	47	81	61
AT1G65590	down	-2.398340421693644	3.502502858357336e-5	0.00115764542526226	AT1G65590	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004563,beta-N-acetylhexosaminidase activity; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0015929,hexosaminidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030203,glycosaminoglycan metabolic process; GO:0102148,N-acetyl-beta-D-galactosaminidase activity;	HEXA_B; hexosaminidase [EC:3.2.1.52]; K12373;	NP_176737.2 beta-hexosaminidase 3 [Arabidopsis thaliana]	133	162	116	46
AT5G01180	down	-2.2487590620310485	4.9342917262184945e-5	0.00159554539167683	AT5G01180	--	GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035442,dipeptide transmembrane transport; GO:0042937,tripeptide transmembrane transporter activity; GO:0042938,dipeptide transport; GO:0042939,tripeptide transport; GO:0055085,transmembrane transport; GO:0071916,dipeptide transmembrane transporter activity;	--	NP_001331271.1 peptide transporter 5 [Arabidopsis thaliana]	70	77	25	43
AT5G09730	no change	-1.4246267580376126	4.952773514438883e-5	0.00159554539167683	AT5G09730	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity;	XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K15920;	NP_196535.1 beta-xylosidase 3 [Arabidopsis thaliana]	1763	1421	1183	850
AT3G14210	up	3.0086491580288524	5.449093373035253e-5	0.00172466019615371	AT3G14210	--	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009625,response to insect; GO:0009941,chloroplast envelope; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_188037.1 GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]	536	601	1877	1333
AT5G14320	no change	-0.9674734154400276	5.489095319781955e-5	0.00172466019615371	AT5G14320	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S13, rpsM; small subunit ribosomal protein S13; K02952;	NP_568299.1 Ribosomal protein S13/S18 family [Arabidopsis thaliana]	754	703	320	246
AT2G01410	no change	1.1912060767379216	5.715388483599309e-5	0.00177386142570246	AT2G01410	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_178250.1 NHL domain-containing protein [Arabidopsis thaliana]	218	152	234	160
AT5G63890	down	-2.245244304072168	6.06339782028645e-5	0.00185919848826855	AT5G63890	--	GO:0000105,histidine biosynthetic process; GO:0004399,histidinol dehydrogenase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009411,response to UV; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046872,metal ion binding; GO:0051287,NAD binding;	hisD; histidinol dehydrogenase [EC:1.1.1.23]; K00013;	NP_568981.2 histidinol dehydrogenase [Arabidopsis thaliana]	167	165	175	137
AT4G22530	down	-2.0477455423485926	6.29234387257973e-5	0.0019064303756804	AT4G22530	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_001329270.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	68	66	50	28
AT5G55930	no change	-1.488117274365464	6.655024933944e-5	0.00199259275963382	AT5G55930	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_200404.1 oligopeptide transporter 1 [Arabidopsis thaliana]	259	215	92	77
AT4G21810	down	-2.1697138172911754	6.805726169348221e-5	0.00201402012802223	AT4G21810	--	GO:0000839,Hrd1p ubiquitin ligase ERAD-L complex; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006950,response to stress; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0051787,misfolded protein binding; GO:1990381,ubiquitin-specific protease binding;	DERL2_3; Derlin-2/3; K13989;	NP_193912.3 DERLIN-2.1 [Arabidopsis thaliana]	91	117	55	19
AT1G08460	up	2.0659285466360764	6.913574446346083e-5	0.00202241919148859	AT1G08460	--	GO:0004407,histone deacetylase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_001320319.1 histone deacetylase 8 [Arabidopsis thaliana]	86	65	62	43
AT2G46225	down	-1.6518378382324237	7.154095337769142e-5	0.00206555372145888	AT2G46225	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0010090,trichome morphogenesis; GO:0031209,SCAR complex; GO:0045010,actin nucleation; GO:0110165,cellular anatomical entity;	--	NP_001189756.1 ABI-1-like 1 [Arabidopsis thaliana]	98	126	82	67
AT5G67490	up	1.9510386897496907	7.223350931624384e-5	0.00206555372145888	AT5G67490	--	GO:0005739,mitochondrion; GO:0006099,tricarboxylic acid cycle; GO:0034553,mitochondrial respiratory chain complex II assembly;	--	NP_569049.1 succinate dehydrogenase assembly factor [Arabidopsis thaliana]	686	603	447	426
AT5G64270	no change	1.0729480507417692	8.56907789437381e-5	0.0024231448045757	AT5G64270	--	GO:0000245,spliceosomal complex assembly; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005686,U2 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0009536,plastid; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3B1, SAP155; splicing factor 3B subunit 1; K12828;	NP_201232.1 splicing factor [Arabidopsis thaliana]	1232	999	976	660
AT4G35420	down	-2.3841952250721157	8.895197586027705e-5	0.00248772284136708	AT4G35420	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009555,pollen development; GO:0010584,pollen exine formation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0048316,seed development; GO:0080110,sporopollenin biosynthetic process;	--	NP_195268.2 dihydroflavonol 4-reductase-like1 [Arabidopsis thaliana]	199	221	62	43
AT5G61480	no change	1.4530395998232422	9.279802843978232e-5	0.00256707589542658	AT5G61480	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0010089,xylem development; GO:0010223,secondary shoot formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0051301,cell division; GO:0106310,protein serine kinase activity;	--	NP_200956.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	349	404	318	257
AT5G58640	down	-1.526736570212179	9.594232626431955e-5	0.00262551849830853	AT5G58640	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	SELENOT; thioredoxin reductase-like selenoprotein T; K22366;	NP_200672.1 Selenoprotein, Rdx type [Arabidopsis thaliana]	153	101	78	69
AT2G38780	down	-3.364246057343518	9.703624876531934e-5	0.00262720482029508	AT2G38780	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016020,membrane;	--	NP_001324243.1 cytochrome C oxidase subunit [Arabidopsis thaliana]	45	27	12	6
AT5G48580	no change	-1.1191029005095912	1.0543957014222238e-4	0.00282467058959953	AT5G48580	--	GO:0000325,plant-type vacuole; GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005794,Golgi apparatus; GO:0009536,plastid; GO:0009620,response to fungus; GO:0016853,isomerase activity; GO:0034976,response to endoplasmic reticulum stress; GO:0061077,chaperone-mediated protein folding; GO:0071781,endoplasmic reticulum cisternal network; GO:0085035,haustorium;	--	NP_199669.1 FK506- and rapamycin-binding protein 15 kD-2 [Arabidopsis thaliana]	278	271	110	74
AT5G13780	no change	1.330009063460575	1.1050631937887994e-4	0.00292956857103384	AT5G13780	--	GO:0003729,mRNA binding; GO:0004596,peptide alpha-N-acetyltransferase activity; GO:0005829,cytosol; GO:0006474,N-terminal protein amino acid acetylation; GO:0008080,N-acetyltransferase activity; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0031415,NatA complex; GO:1990189,peptide-serine-alpha-N-acetyltransferase activity; GO:1990190,peptide-glutamate-alpha-N-acetyltransferase activity;	--	NP_196882.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	178	163	158	133
AT5G22650	down	-2.013719038356431	1.1345447288753736e-4	0.00297671787112147	AT5G22650	--	GO:0000325,plant-type vacuole; GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0048364,root development;	--	NP_851056.1 histone deacetylase 2B [Arabidopsis thaliana]	1079	962	849	696
AT1G29940	no change	1.1451119332760755	1.1853401965038604e-4	0.00307825591847175	AT1G29940	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0009561,megagametogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0032549,ribonucleoside binding; GO:0042254,ribosome biogenesis; GO:0046872,metal ion binding;	RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]; K03002;	NP_564341.2 nuclear RNA polymerase A2 [Arabidopsis thaliana]	198	199	322	176
AT3G20790	down	-1.839168163470336	1.494462327152146e-4	0.00384182487131536	AT3G20790	--	GO:0000166,nucleotide binding; GO:0006740,NADPH regeneration; GO:0016491,oxidoreductase activity;	--	NP_188715.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	357	556	152	158
AT2G47390	no change	-0.874588557063799	1.7201211349960677e-4	0.00437770828856499	AT2G47390	--	GO:0006508,proteolysis; GO:0008236,serine-type peptidase activity;	--	KAG7640041.1 Alpha/Beta hydrolase fold [Arabidopsis thaliana x Arabidopsis arenosa]	841	784	639	499
AT2G40770	down	-2.07526093779883	1.77333322380575e-4	0.00446844856889666	AT2G40770	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006338,chromatin remodeling; GO:0008150,biological_process; GO:0046872,metal ion binding; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_001318395.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]	84	60	29	19
AT1G20450	no change	-1.0417458822047796	1.836322168761462e-4	0.00457803817250694	AT1G20450	--	GO:0001786,phosphatidylserine binding; GO:0003779,actin binding; GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009506,plasmodesma; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0009992,cellular water homeostasis; GO:0010029,regulation of seed germination; GO:0015629,actin cytoskeleton; GO:0016020,membrane; GO:0016151,nickel cation binding; GO:0019898,extrinsic component of membrane; GO:0031210,phosphatidylcholine binding; GO:0044183,protein folding chaperone; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0090559,regulation of membrane permeability;	--	NP_850947.1 Dehydrin family protein [Arabidopsis thaliana]	2257	1752	1072	766
AT5G04770	down	-2.3478805523344795	1.852801303607919e-4	0.00457803817250694	AT5G04770	--	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0015171,amino acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport;	--	NP_196097.1 cationic amino acid transporter 6 [Arabidopsis thaliana]	101	75	35	41
AT4G37260	up	1.867918561265146	1.9919839688050487e-4	0.00487461461597004	AT4G37260	MYB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0019760,glucosinolate metabolic process; GO:1901001,negative regulation of response to salt stress;	--	NP_195443.1 myb domain protein 73 [Arabidopsis thaliana]	223	230	194	151
AT2G25280	down	-1.7542933731595145	2.105340637862824e-4	0.00510294468891513	AT2G25280	--	--	--	NP_565590.1 AmmeMemoRadiSam system protein B [Arabidopsis thaliana]	187	145	78	30
AT5G02820	up	2.408682768887738	2.1578131557110436e-4	0.00518078724649491	AT5G02820	--	GO:0000166,nucleotide binding; GO:0000228,nuclear chromosome; GO:0000287,magnesium ion binding; GO:0000706,meiotic DNA double-strand break processing; GO:0003677,DNA binding; GO:0003824,catalytic activity; GO:0003916,DNA topoisomerase activity; GO:0003918,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006259,DNA metabolic process; GO:0006265,DNA topological change; GO:0007131,reciprocal meiotic recombination; GO:0009330,DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex; GO:0009957,epidermal cell fate specification; GO:0016853,isomerase activity; GO:0042138,meiotic DNA double-strand break formation; GO:0042802,identical protein binding; GO:0046872,metal ion binding;	SPO11; meiotic recombination protein SPO11; K10878;	NP_195902.1 Spo11/DNA topoisomerase VI, subunit A protein [Arabidopsis thaliana]	55	39	40	25
AT5G10790	up	2.8995625087837213	2.247610547475648e-4	0.00529849954520683	AT5G10790	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006508,proteolysis; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0008270,zinc ion binding; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0070461,SAGA-type complex;	--	NP_001332186.1 ubiquitin-specific protease 22 [Arabidopsis thaliana]	15	42	35	18
AT5G41860	up	1.57055685851633	2.2484791783196017e-4	0.00529849954520683	AT5G41860	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_199001.1 transmembrane protein [Arabidopsis thaliana]	66	50	81	80
AT1G73880	no change	-1.4755216324593512	2.2735555576420817e-4	0.00530843935247623	AT1G73880	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_177529.2 UDP-glucosyl transferase 89B1 [Arabidopsis thaliana]	148	125	50	37
AT5G10540	no change	1.0255069648260546	2.4016793906244652e-4	0.00555661277194478	AT5G10540	--	GO:0004222,metalloendopeptidase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0006518,peptide metabolic process; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0048046,apoplast;	--	NP_568232.1 Zincin-like metalloproteases family protein [Arabidopsis thaliana]	733	705	554	445
AT3G09440	no change	-1.288135135673758	2.759578480565907e-4	0.00632714165138759	AT3G09440	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0016363,nuclear matrix; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone;	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283;	NP_001189847.1 Heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]	2533	2289	994	844
AT1G22850	down	-2.0706720751318075	2.972877109037259e-4	0.00675533235937484	AT1G22850	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016020,membrane;	--	VYS46932.1 unnamed protein product [Arabidopsis thaliana]	78	57	43	21
AT1G02110	up	1.7271911562758149	3.474828645953345e-4	0.0078260521273905	AT1G02110	--	--	--	NP_171713.2 bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]	96	52	84	61
AT3G46620	up	2.2615849324079136	3.57789376142402e-4	0.00798749089721415	AT3G46620	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051865,protein autoubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_190246.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	109	80	85	74
AT5G48230	no change	-1.1388739030003725	3.662850144747397e-4	0.0081060466246801	AT5G48230	--	GO:0003985,acetyl-CoA C-acetyltransferase activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006635,fatty acid beta-oxidation; GO:0008299,isoprenoid biosynthetic process; GO:0009536,plastid; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0016125,sterol metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0046872,metal ion binding;	ACAT, atoB; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; K00626;	NP_568694.2 acetoacetyl-CoA thiolase 2 [Arabidopsis thaliana]	671	566	263	194
AT1G78000	down	-2.0829252198800887	3.7089035968896006e-4	0.0081372065983483	AT1G78000	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0009970,cellular response to sulfate starvation; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_001321366.1 sulfate transporter 1;2 [Arabidopsis thaliana]	47	47	30	31
AT3G18035	no change	-1.083449239843955	3.774534792356774e-4	0.00821041969790426	AT3G18035	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_188431.3 winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]	593	537	511	351
AT1G76150	no change	-0.831897858095018	3.812895102329456e-4	0.00821265756315756	AT1G76150	--	GO:0003857,3-hydroxyacyl-CoA dehydrogenase activity; GO:0004300,enoyl-CoA hydratase activity; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0016491,oxidoreductase activity; GO:0016829,lyase activity; GO:0033542,fatty acid beta-oxidation, unsaturated, even number; GO:0044594,17-beta-hydroxysteroid dehydrogenase (NAD+) activity; GO:0080023,3R-hydroxyacyl-CoA dehydratase activity;	ECH2; peroxisomal enoyl-CoA hydratase 2 [EC:4.2.1.119]; K19658;	NP_177742.2 enoyl-CoA hydratase 2 [Arabidopsis thaliana]	423	412	265	224
AT3G10130	down	-2.219177024891966	3.8401031434803535e-4	0.00821265756315756	AT3G10130	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0020037,heme binding; GO:0110165,cellular anatomical entity;	--	NP_187624.1 SOUL heme-binding family protein [Arabidopsis thaliana]	55	44	21	24
AT1G07050	up	2.8916788836350733	4.029041406534829e-4	0.00854492531635928	AT1G07050	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_001320785.1 CCT motif family protein [Arabidopsis thaliana]	47	51	77	52
AT4G02130	up	2.014262310077811	4.346646340619049e-4	0.00914232639411196	AT4G02130	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	--	NP_001031573.1 galacturonosyltransferase 6 [Arabidopsis thaliana]	90	99	67	65
AT1G78040	down	-1.8093529241762285	4.3862633220152834e-4	0.00915003291354827	AT1G78040	--	GO:0005515,protein binding;	--	NP_001077838.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	3616	3591	1995	1640
AT2G31560	down	-2.120875755168372	4.6587430108754424e-4	0.00963943167697398	AT2G31560	--	--	--	NP_001325346.1 signal transducer/transcription protein, putative (DUF1685) [Arabidopsis thaliana]	87	71	60	28
AT3G32940	up	1.681737507566499	4.746008342013199e-4	0.00974079937937386	AT3G32940	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0048024,regulation of mRNA splicing, via spliceosome;	--	NP_189783.2 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	64	59	79	56
AT3G59970	no change	-1.06978130658422	4.7885386345284314e-4	0.00974946465989988	AT3G59970	--	GO:0004489,methylenetetrahydrofolate reductase (NAD(P)H) activity; GO:0005829,cytosol; GO:0006555,methionine metabolic process; GO:0009086,methionine biosynthetic process; GO:0016491,oxidoreductase activity; GO:0035999,tetrahydrofolate interconversion; GO:0071949,FAD binding; GO:0106312,methylenetetrahydrofolate reductase NADH activity; GO:0106313,methylenetetrahydrofolate reductase NADPH activity;	metF, MTHFR; methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]; K00297;	NP_191556.1 methylenetetrahydrofolate reductase 1 [Arabidopsis thaliana]	2313	2144	1343	1122
AT3G62720	up	1.9406507426209672	5.02348937154478e-4	0.01014665115125513	AT3G62720	--	GO:0000139,Golgi membrane; GO:0000271,polysaccharide biosynthetic process; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006486,protein glycosylation; GO:0009969,xyloglucan biosynthetic process; GO:0010411,xyloglucan metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0033843,xyloglucan 6-xylosyltransferase activity; GO:0035252,UDP-xylosyltransferase activity; GO:0046872,metal ion binding;	--	NP_001030917.1 xylosyltransferase 1 [Arabidopsis thaliana]	132	146	122	110
AT3G51070	no change	-1.319917524313051	5.521522912333862e-4	0.01106478410385014	AT3G51070	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_190676.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	197	157	78	35
AT3G05750	up	2.386756475821361	5.711937235105268e-4	0.01135693770573664	AT3G05750	--	GO:0000132,establishment of mitotic spindle orientation; GO:0000913,preprophase band assembly; GO:0009574,preprophase band;	--	NP_187226.2 serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]	48	37	44	31
AT3G10180	up	2.6946568626586433	6.033101192112326e-4	0.01190251359219059	AT3G10180	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0016787,hydrolase activity;	--	NP_187629.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	62	39	46	24
AT3G61540	up	3.2555399105397953	6.233942150529419e-4	0.01220414059469028	AT3G61540	--	GO:0004177,aminopeptidase activity; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_191713.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	84	92	88	67
AT1G76180	down	-1.631210346690799	6.303685479549907e-4	0.01224647293546146	AT1G76180	--	GO:0001786,phosphatidylserine binding; GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0008289,lipid binding; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009507,chloroplast; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031210,phosphatidylcholine binding; GO:0044183,protein folding chaperone; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0051179,localization; GO:0090559,regulation of membrane permeability;	--	NP_001185408.1 Dehydrin family protein [Arabidopsis thaliana]	3966	3847	1910	1378
AT5G20720	no change	-0.928957331597613	6.50283811895375e-4	0.0125376689490434	AT5G20720	--	GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0009941,chloroplast envelope; GO:0046872,metal ion binding; GO:0046914,transition metal ion binding; GO:0048046,apoplast; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding; GO:0051290,protein heterotetramerization; GO:0140662,ATP-dependent protein folding chaperone; GO:1901671,positive regulation of superoxide dismutase activity;	--	NP_001318614.1 chaperonin 20 [Arabidopsis thaliana]	1228	1138	675	525
AT1G10500	down	-1.6890794116409076	6.568357919200472e-4	0.01256877511606406	AT1G10500	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0030674,protein-macromolecule adaptor activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding;	--	NP_172520.1 chloroplast-localized ISCA-like protein [Arabidopsis thaliana]	202	210	104	76
AT1G49780	down	-1.7302522185840743	7.051778320900387e-4	0.01332102623308809	AT1G49780	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity; GO:0098542,defense response to other organism;	--	NP_175400.1 plant U-box 26 [Arabidopsis thaliana]	83	73	30	29
AT2G40430	no change	1.0190312473876777	7.066163227767753e-4	0.01332102623308809	AT2G40430	--	GO:0000027,ribosomal large subunit assembly; GO:0000460,maturation of 5.8S rRNA; GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008097,5S rRNA binding; GO:0008150,biological_process; GO:0010971,positive regulation of G2/M transition of mitotic cell cycle; GO:0042254,ribosome biogenesis; GO:0051781,positive regulation of cell division;	--	NP_001318390.1 Nop53 protein [Arabidopsis thaliana]	169	185	200	149
AT1G73970	down	-2.0970083430005904	7.27477611212514e-4	0.01361345970982241	AT1G73970	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_177537.2 obscurin-like protein [Arabidopsis thaliana]	280	116	64	67
AT4G34670	down	-1.8700418089205613	7.554119561591411e-4	0.01403301772573003	AT4G34670	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae; K02984;	NP_195193.1 Ribosomal protein S3Ae [Arabidopsis thaliana]	2426	2334	1723	1332
AT5G65990	down	-1.9908506356751765	7.623494903786746e-4	0.01405927139865019	AT5G65990	--	GO:0003333,amino acid transmembrane transport; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006865,amino acid transport; GO:0015173,aromatic amino acid transmembrane transporter activity; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015801,aromatic amino acid transport; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport;	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209;	NP_201400.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	162	175	93	75
AT4G15545	up	2.203738607164574	7.823501912314205e-4	0.01432432544376953	AT4G15545	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0010168,ER body; GO:0043621,protein self-association; GO:0080119,ER body organization;	--	NP_567470.1 PH-response transcription factor [Arabidopsis thaliana]	49	52	45	17
AT5G18748	up	2.69843158185495	8.300921256419005e-4	0.01508988899827597	AT5G18748	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001119250.1 hypothetical protein AT5G18748 [Arabidopsis thaliana]	12	5	30	36
AT5G64030	down	-1.8748231781730451	8.429585062528157e-4	0.0152151021164072	AT5G64030	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_201208.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	910	769	425	302
AT3G15260	up	2.53194838781723	8.582708787887802e-4	0.0153823900458975	AT3G15260	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding;	--	NP_188144.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	36	56	47	19
AT2G35940	no change	1.1470626674029267	9.124360776618868e-4	0.01623880991363288	AT2G35940	TALE	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009610,response to symbiotic fungus; GO:0009737,response to abscisic acid; GO:0010197,polar nucleus fusion; GO:0010201,response to continuous far red light stimulus by the high-irradiance response system; GO:0042803,protein homodimerization activity; GO:0046982,protein heterodimerization activity;	--	CAA0374919.1 unnamed protein product [Arabidopsis thaliana]	141	142	123	104
AT3G54600	up	2.9452207766561855	0.00101473929444629	0.01793410766920711	AT3G54600	--	GO:0003674,molecular_function; GO:0005829,cytosol;	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881;	NP_191023.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	74	69	69	66
AT5G42980	no change	-0.7126552156596748	0.00103004569409517	0.01807907787222212	AT5G42980	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010188,response to microbial phytotoxin; GO:0010286,heat acclimation; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0050832,defense response to fungus; GO:0051259,protein complex oligomerization;	trxA; thioredoxin 1; K03671;	NP_199112.1 thioredoxin 3 [Arabidopsis thaliana]	915	844	551	378
AT3G27230	down	-1.923012223793613	0.00106833207865184	0.01862263794636261	AT3G27230	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0032259,methylation;	--	NP_566813.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	150	124	54	54
AT3G02780	no change	-0.7223928957479191	0.00107650636813765	0.01863747419666887	AT3G02780	--	GO:0004452,isopentenyl-diphosphate delta-isomerase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009240,isopentenyl diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009908,flower development; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016853,isomerase activity; GO:0046872,metal ion binding; GO:0050992,dimethylallyl diphosphate biosynthetic process;	idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]; K01823;	NP_186927.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 [Arabidopsis thaliana]	347	331	340	219
AT3G10850	no change	-0.9571093906272732	0.00110662301433956	0.01898490377174796	AT3G10850	--	GO:0004416,hydroxyacylglutathione hydrolase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0019243,methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione; GO:0046872,metal ion binding; GO:0099503,secretory vesicle;	gloB, gloC, HAGH; hydroxyacylglutathione hydrolase [EC:3.1.2.6]; K01069;	NP_187696.1 Metallo-hydrolase/oxidoreductase superfamily protein [Arabidopsis thaliana]	402	367	234	185
AT4G18100	no change	-1.2441371784269633	0.00111149338388622	0.01898490377174796	AT4G18100	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L32e, RPL32; large subunit ribosomal protein L32e; K02912;	NP_193544.1 Ribosomal protein L32e [Arabidopsis thaliana]	1067	928	688	561
AT3G21750	no change	0.9434230558859564	0.00116442031427794	0.01950516057019802	AT3G21750	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_188812.1 UDP-glucosyl transferase 71B1 [Arabidopsis thaliana]	303	344	218	174
AT4G01690	no change	-1.202507301400609	0.00116545776875685	0.01950516057019802	AT4G01690	--	GO:0004729,oxygen-dependent protoporphyrinogen oxidase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity;	PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]; K00231;	NP_192078.1 Flavin containing amine oxidoreductase family [Arabidopsis thaliana]	341	304	231	194
AT5G47970	no change	-1.3888911712061276	0.00116720448506452	0.01950516057019802	AT5G47970	--	GO:0002943,tRNA dihydrouridine synthesis; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008033,tRNA processing; GO:0009524,phragmoplast; GO:0016491,oxidoreductase activity; GO:0017150,tRNA dihydrouridine synthase activity; GO:0050660,flavin adenine dinucleotide binding;	--	NP_001078731.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	70	87	83	80
AT3G02200	no change	-0.7148177028016105	0.00117260886728498	0.01950516057019802	AT3G02200	--	GO:0000502,proteasome complex; GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m;	--	NP_001319448.1 Proteasome component (PCI) domain protein [Arabidopsis thaliana]	371	312	389	273
AT2G44850	down	-3.051466539856319	0.0011937184878125	0.01964072357684055	AT2G44850	--	GO:0005739,mitochondrion;	--	NP_182012.1 hypothetical protein AT2G44850 [Arabidopsis thaliana]	20	34	9	8
AT5G56120	down	-2.1895408882679765	0.00119619338090777	0.01964072357684055	AT5G56120	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_200423.2 RNA polymerase II elongation factor [Arabidopsis thaliana]	86	78	24	30
AT5G18170	down	-1.7451339031537474	0.00128049908374153	0.02083971532222701	AT5G18170	--	GO:0000166,nucleotide binding; GO:0004352,glutamate dehydrogenase (NAD+) activity; GO:0004353,glutamate dehydrogenase [NAD(P)+] activity; GO:0004354,glutamate dehydrogenase (NADP+) activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006520,cellular amino acid metabolic process; GO:0006538,glutamate catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009536,plastid; GO:0009646,response to absence of light; GO:0016491,oxidoreductase activity; GO:0016639,oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor; GO:0050897,cobalt ion binding;	GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]; K00261;	NP_197318.1 glutamate dehydrogenase 1 [Arabidopsis thaliana]	137	107	76	43
AT3G48330	no change	-1.2531788985070498	0.00128913820856502	0.02083971532222701	AT3G48330	--	GO:0004719,protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; GO:0005737,cytoplasm; GO:0006479,protein methylation; GO:0007568,aging; GO:0008168,methyltransferase activity; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009845,seed germination; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0030091,protein repair; GO:0032259,methylation; GO:0036211,protein modification process;	E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]; K00573;	NP_680112.2 protein-l-isoaspartate methyltransferase 1 [Arabidopsis thaliana]	125	98	74	71
AT5G37490	down	-5.777983088401985	0.00129378193356065	0.02083971532222701	AT5G37490	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity;	--	NP_198565.1 ARM repeat superfamily protein [Arabidopsis thaliana]	9	16	5	0
AT1G78180	down	-2.9719838671945755	0.00132309651398086	0.02117786558541703	AT1G78180	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_565171.4 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	38	14	25	8
AT1G79720	no change	1.1953852751969158	0.00133164387843363	0.02118146044133501	AT1G79720	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0048046,apoplast;	--	NP_565219.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	128	129	74	61
AT3G54080	no change	-0.7103951669468285	0.00137383643518323	0.0217168554505673	AT3G54080	--	GO:0003674,molecular_function; GO:0016020,membrane; GO:0030246,carbohydrate binding; GO:0050896,response to stimulus;	--	NP_190976.1 Concanavalin A-like lectin family protein [Arabidopsis thaliana]	405	322	262	203
AT2G02760	no change	1.2567679581070088	0.00146128273980957	0.02295657143713196	AT2G02760	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016567,protein ubiquitination; GO:0016574,histone ubiquitination; GO:0016740,transferase activity; GO:0033523,histone H2B ubiquitination; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0061631,ubiquitin conjugating enzyme activity;	UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]; K10573;	NP_001288862.1 ubiquitin-conjugating enzyme E2 2 [Brassica rapa]	312	292	231	107
AT3G26730	no change	0.8254204289532938	0.00151280600063966	0.02362019185047823	AT3G26730	--	GO:0000976,transcription cis-regulatory region binding; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_189307.2 RING/U-box superfamily protein [Arabidopsis thaliana]	152	151	299	291
AT2G15690	no change	0.930552507606901	0.00163624130702705	0.02539167150234054	AT2G15690	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0043231,intracellular membrane-bounded organelle;	--	NP_565377.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	300	222	218	154
AT5G35360	down	-1.800566424201147	0.00169050787093753	0.02607480322143051	AT5G35360	--	GO:0000166,nucleotide binding; GO:0003989,acetyl-CoA carboxylase activity; GO:0004075,biotin carboxylase activity; GO:0005524,ATP binding; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0046872,metal ion binding; GO:2001295,malonyl-CoA biosynthetic process;	accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]; K01961;	NP_198386.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit [Arabidopsis thaliana]	1668	1583	1279	963
AT3G02560	up	1.8437456208673415	0.00172574598058254	0.02645797301555767	AT3G02560	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0009507,chloroplast; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0032040,small-subunit processome; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex;	RP-S7e, RPS7; small subunit ribosomal protein S7e; K02993;	NP_001319452.1 Ribosomal protein S7e family protein [Arabidopsis thaliana]	480	487	582	479
AT1G48100	down	-1.8219616601779416	0.00177934353495807	0.02710982770484794	AT1G48100	--	GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009831,plant-type cell wall modification involved in multidimensional cell growth; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0071555,cell wall organization;	--	NP_175244.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	218	182	68	39
AT1G10850	down	-1.601305882095093	0.00179784323132732	0.02710982770484794	AT1G10850	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001077512.4 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	79	96	50	21
AT5G40450	up	1.8800339302405664	0.00180022038590149	0.02710982770484794	AT5G40450	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0080171,lytic vacuole organization;	--	NP_001330812.1 A-kinase anchor-like protein [Arabidopsis thaliana]	722	609	619	503
AT2G46520	up	2.9391108597337876	0.00182889691494852	0.02737966263849404	AT2G46520	--	GO:0005049,nuclear export signal receptor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006611,protein export from nucleus; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0031267,small GTPase binding;	CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter); K18423;	NP_182175.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter [Arabidopsis thaliana]	423	403	303	320
AT3G21360	up	2.122837190915507	0.00187337027276647	0.02788144645725537	AT3G21360	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_188773.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	30	40	25	21
AT4G01800	no change	-1.3314136014793805	0.00191375442816302	0.02814112589495319	AT4G01800	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009646,response to absence of light; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010090,trichome morphogenesis; GO:0010109,regulation of photosynthesis; GO:0015031,protein transport; GO:0015462,ABC-type protein transporter activity; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0017038,protein import; GO:0071806,protein transmembrane transport;	secA; preprotein translocase subunit SecA [EC:7.4.2.8]; K03070;	NP_001328302.1 Albino or Glassy Yellow 1 [Arabidopsis thaliana]	461	468	386	278
AT3G52230	up	1.9025901857954768	0.00191878086210938	0.02814112589495319	AT3G52230	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope;	--	NP_566963.1 hypothetical protein AT3G52230 [Arabidopsis thaliana]	207	145	241	182
AT2G22870	down	-1.8997438814778944	0.00193221820645885	0.02814112589495319	AT2G22870	--	GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0046872,metal ion binding;	--	NP_565543.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	29	43	51	26
AT1G14890	down	-1.52991868688928	0.00193938957121212	0.02814112589495319	AT1G14890	--	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity;	--	NP_563960.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]	107	143	77	49
AT3G18750	down	-2.3885751333263636	0.00194610536640933	0.02814112589495319	AT3G18750	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	--	NP_001189928.1 with no lysine (K) kinase 6 [Arabidopsis thaliana]	37	33	11	21
AT3G12400	no change	-1.4090093647844435	0.00202529006327373	0.02912069610752344	AT3G12400	--	GO:0000813,ESCRT I complex; GO:0005515,protein binding; GO:0005768,endosome; GO:0005769,early endosome; GO:0005770,late endosome; GO:0008333,endosome to lysosome transport; GO:0010091,trichome branching; GO:0015031,protein transport; GO:0032991,protein-containing complex; GO:0036211,protein modification process; GO:0043130,ubiquitin binding; GO:0051301,cell division; GO:0110165,cellular anatomical entity;	TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101; K12183;	NP_001327160.1 Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]	113	105	73	59
AT3G59410	down	-2.033718324236064	0.00205579687690424	0.02920615926355047	AT3G59410	--	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004694,eukaryotic translation initiation factor 2alpha kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006417,regulation of translation; GO:0006468,protein phosphorylation; GO:0006521,regulation of cellular amino acid metabolic process; GO:0009635,response to herbicide; GO:0010998,regulation of translational initiation by eIF2 alpha phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0034198,cellular response to amino acid starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0070301,cellular response to hydrogen peroxide; GO:0072755,cellular response to benomyl; GO:0080090,regulation of primary metabolic process; GO:0106310,protein serine kinase activity; GO:1990451,cellular stress response to acidic pH;	EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1]; K16196;	NP_001326041.1 protein kinase family protein [Arabidopsis thaliana]	61	48	18	11
AT3G05900	no change	-1.3667104602565887	0.00206558277807446	0.02920615926355047	AT3G05900	--	GO:0003674,molecular_function; GO:0005829,cytosol;	--	NP_187241.2 neurofilament protein-like protein [Arabidopsis thaliana]	557	542	431	309
AT1G76990	no change	1.337226346234922	0.00207028986060644	0.02920615926355047	AT1G76990	--	GO:0005829,cytosol; GO:0016597,amino acid binding;	--	NP_001031289.1 ACT domain repeat 3 [Arabidopsis thaliana]	347	330	343	294
AT5G65460	up	1.7106776661645569	0.00207713745646469	0.02920615926355047	AT5G65460	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007017,microtubule-based process; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement; GO:0015630,microtubule cytoskeleton; GO:0016020,membrane; GO:0031022,nuclear migration along microfilament;	--	NP_001331384.1 kinesin like protein for actin based chloroplast movement 2 [Arabidopsis thaliana]	138	156	137	123
AT3G28730	no change	1.0268002353335055	0.00218174989353082	0.0305085355990986	AT3G28730	--	GO:0000741,karyogamy; GO:0000791,euchromatin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006355,regulation of DNA-templated transcription; GO:0006974,cellular response to DNA damage stimulus; GO:0010197,polar nucleus fusion; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016043,cellular component organization; GO:0031491,nucleosome binding; GO:0035101,FACT complex; GO:0042393,histone binding;	--	NP_189515.1 high mobility group [Arabidopsis thaliana]	413	376	343	268
AT5G63780	no change	1.384748916715906	0.00222882336993146	0.0309795192548034	AT5G63780	--	GO:0008270,zinc ion binding; GO:0010492,maintenance of shoot apical meristem identity; GO:0016020,membrane; GO:0048507,meristem development;	--	NP_001331890.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	128	94	89	82
AT4G14540	up	1.5815894485111377	0.00224332741574632	0.0309795192548034	AT4G14540	NF-YB	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0016602,CCAAT-binding factor complex; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046982,protein heterodimerization activity;	NFYB, HAP3; nuclear transcription Y subunit beta; K08065;	NP_193190.1 nuclear factor Y, subunit B3 [Arabidopsis thaliana]	94	97	140	79
AT2G35820	up	1.9321730016323508	0.00225194933679317	0.0309795192548034	AT2G35820	--	GO:0004848,ureidoglycolate hydrolase activity; GO:0005829,cytosol; GO:0016787,hydrolase activity;	--	NP_001325071.1 ureidoglycolate hydrolase [Arabidopsis thaliana]	50	33	24	34
AT5G19780	down	-3.2283035726538767	0.0022695633015898	0.03105397098143045	AT5G19780	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0005200,structural constituent of cytoskeleton; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	TUBA; tubulin alpha; K07374;	NP_197478.1 tubulin alpha-3 [Arabidopsis thaliana]	826	836	650	526
AT3G02910	up	1.5015948358631643	0.00228317597883103	0.03107317040708545	AT3G02910	--	GO:0005829,cytosol; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0061929,gamma-glutamylaminecyclotransferase activity;	GGACT; gamma-glutamylaminecyclotransferase [EC:2.3.2.-]; K19761;	NP_566187.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]	53	71	84	80
AT2G26440	down	-1.6517264226495243	0.00241359585573381	0.03267341198320506	AT2G26440	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0009617,response to bacterium; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	--	NP_180212.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	390	340	238	154
AT4G17870	down	-1.7382155484118318	0.0025219759695875002	0.03366443877157381	AT4G17870	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0044389,ubiquitin-like protein ligase binding; GO:0062049,protein phosphatase inhibitor complex; GO:0080163,regulation of protein serine/threonine phosphatase activity; GO:1902584,positive regulation of response to water deprivation;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_193521.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	69	89	53	21
AT4G34120	no change	-1.196569547684896	0.00252534364034376	0.03366443877157381	AT4G34120	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0045454,cell redox homeostasis;	--	NP_567952.1 Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]	338	288	140	111
AT5G66570	no change	1.0498625267092665	0.00252648636753265	0.03366443877157381	AT5G66570	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010205,photoinhibition; GO:0010207,photosystem II assembly; GO:0010242,oxygen evolving activity; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019684,photosynthesis, light reaction; GO:0031977,thylakoid lumen; GO:0035304,regulation of protein dephosphorylation; GO:0042549,photosystem II stabilization; GO:0048046,apoplast; GO:0055035,plastid thylakoid membrane;	psbO; photosystem II oxygen-evolving enhancer protein 1; K02716;	NP_201458.1 PS II oxygen-evolving complex 1 [Arabidopsis thaliana]	19951	15404	13975	11760
AT2G39800	no change	-1.2978278746763214	0.0026595331493989	0.03525266596468858	AT2G39800	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004349,glutamate 5-kinase activity; GO:0004350,glutamate-5-semialdehyde dehydrogenase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006561,proline biosynthetic process; GO:0006979,response to oxidative stress; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009084,glutamine family amino acid biosynthetic process; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009555,pollen development; GO:0009651,response to salt stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0016740,transferase activity; GO:0017084,delta1-pyrroline-5-carboxylate synthetase activity; GO:0042538,hyperosmotic salinity response; GO:0048364,root development; GO:0055129,L-proline biosynthetic process;	ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase [EC:2.7.2.11 1.2.1.41]; K12657;	NP_001189715.1 delta1-pyrroline-5-carboxylate synthase 1 [Arabidopsis thaliana]	1289	1225	1216	1005
AT5G13090	down	-2.1127794154406994	0.00276721188043815	0.03648991831976737	AT5G13090	--	--	--	KAG7602071.1 hypothetical protein ISN45_At05g011820 [Arabidopsis thaliana x Arabidopsis arenosa]	33	40	44	48
AT4G40060	no change	1.292929094697164	0.00286081511349758	0.03752976527758425	AT4G40060	HD-ZIP	GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009637,response to blue light; GO:0030308,negative regulation of cell growth; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0048573,photoperiodism, flowering;	--	NP_195716.1 homeobox protein 16 [Arabidopsis thaliana]	128	112	137	106
AT1G60870	no change	0.9721891803044986	0.00292306078126431	0.0381496907093215	AT1G60870	--	GO:0009506,plasmodesma; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy;	--	NP_564765.1 maternal effect embryo arrest 9 [Arabidopsis thaliana]	142	166	163	94
AT5G22300	down	-1.811017060026864	0.00297006017913938	0.03856532222402922	AT5G22300	--	GO:0000257,nitrilase activity; GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0018822,nitrile hydratase activity; GO:0019499,cyanide metabolic process; GO:0047427,cyanoalanine nitrilase activity; GO:0047558,3-cyanoalanine hydratase activity; GO:0051410,detoxification of nitrogen compound; GO:0080061,indole-3-acetonitrile nitrilase activity;	NIT4; beta-cyano-L-alanine hydratase/nitrilase [EC:3.5.5.4 4.2.1.65]; K13035;	NP_001330785.1 nitrilase 4 [Arabidopsis thaliana]	74	79	15	40
AT3G46550	no change	1.0891095747619852	0.00311764388931099	0.04027616090505834	AT3G46550	--	GO:0005886,plasma membrane; GO:0007155,cell adhesion; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009897,external side of plasma membrane; GO:0010192,mucilage biosynthetic process; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0048354,mucilage biosynthetic process involved in seed coat development;	--	NP_190239.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	231	141	158	88
AT3G16370	no change	0.9437001282537842	0.00330220968829592	0.04244506897329869	AT3G16370	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0048046,apoplast;	--	NP_188258.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	3357	2932	2701	2037
AT5G56870	down	-1.6806075211087288	0.00332036541774055	0.04246396978969703	AT5G56870	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast;	--	NP_200498.1 beta-galactosidase 4 [Arabidopsis thaliana]	1139	1081	663	528
AT1G06560	no change	1.3917430576230396	0.00338911765126597	0.04312652211235954	AT1G06560	--	GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis;	--	NP_172143.3 NOL1/NOP2/sun family protein [Arabidopsis thaliana]	48	46	62	62
AT4G19120	up	2.271144802424118	0.00353501259899932	0.04475923912663322	AT4G19120	--	GO:0000138,Golgi trans cisterna; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_567575.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	634	635	520	347
AT1G28610	up	2.452113755471533	0.00369277702594828	0.04652533431207122	AT1G28610	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_973932.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	21	12	20	19
AT2G44310	up	1.5431802688226242	0.00372941867881991	0.04675551988963882	AT2G44310	--	GO:0005509,calcium ion binding; GO:0005829,cytosol;	--	NP_566015.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]	239	240	253	214
AT5G58840	down	-3.3109039013671975	0.00377776790147161	0.04712950641786889	AT5G58840	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_568890.2 Subtilase family protein [Arabidopsis thaliana]	32	27	2	2
AT1G33240	no change	1.1432191241750376	0.00387853599817911	0.04805609245935538	AT1G33240	Trihelix	--	--	NP_001322395.1 GT-2-like 1 [Arabidopsis thaliana]	111	109	73	50
AT4G38770	no change	1.3386893563070146	0.00388980551930342	0.04805609245935538	AT4G38770	--	GO:0005576,extracellular region;	--	NP_195588.1 proline-rich protein 4 [Arabidopsis thaliana]	2250	2171	1797	1307
AT2G47010	no change	-1.3365347119839566	0.00392742665480138	0.0482864774708673	AT2G47010	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_566093.4 calcium/calcium/calmodulin-dependent Serine/Threonine-kinase [Arabidopsis thaliana]	110	111	43	44
AT5G04930	down	-1.713094360472791	0.00396202515710091	0.04834810793812601	AT5G04930	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity;	--	NP_568146.1 aminophospholipid ATPase 1 [Arabidopsis thaliana]	162	142	80	50
AT3G46520	no change	-0.7057060395873869	0.00397043401142174	0.04834810793812601	AT3G46520	--	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0007010,cytoskeleton organization; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016787,hydrolase activity;	--	NP_001327017.1 actin-12 [Arabidopsis thaliana]	413	386	161	171
AT5G57250	down	-2.561611247445681	0.00412955088776697	0.05004622385412828	AT5G57250	--	GO:0005515,protein binding; GO:0005739,mitochondrion;	--	BAA96948.1 salt-inducible protein-like [Arabidopsis thaliana]	23	23	10	14
AT1G26120	up	1.5750652139813075	0.00424545417089454	0.05120701831718781	AT1G26120	--	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0010296,prenylcysteine methylesterase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	PCME; prenylcysteine alpha-carboxyl methylesterase [EC:3.1.1.-]; K15889;	NP_173937.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	195	150	227	214
AT4G33355	no change	-1.4644867216048425	0.00431908458696958	0.05171748320135326	AT4G33355	--	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding;	--	NP_680758.3 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	315	304	58	53
AT4G21180	no change	-0.8622580690196475	0.00432841804396394	0.05171748320135326	AT4G21180	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0008320,protein transmembrane transporter activity; GO:0015031,protein transport; GO:0016020,membrane; GO:0031207,Sec62/Sec63 complex; GO:0071806,protein transmembrane transport;	SEC63, DNAJC23; translocation protein SEC63; K09540;	NP_567621.1 DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]	332	216	182	143
AT4G12800	up	2.3195856198397067	0.00437688678892055	0.05205222840094773	AT4G12800	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0031969,chloroplast membrane;	psaL; photosystem I subunit XI; K02699;	NP_001328992.1 photosystem I subunit l [Arabidopsis thaliana]	3690	3748	3811	2855
AT2G44790	down	-2.2558433821450325	0.00451113648705981	0.05339926678868472	AT2G44790	--	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding;	--	NP_182006.1 uclacyanin 2 [Arabidopsis thaliana]	49	44	15	11
AT3G52380	no change	-1.187411689094542	0.00456331424253491	0.05376682753357115	AT3G52380	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0031425,chloroplast RNA processing; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_190806.1 chloroplast RNA-binding protein 33 [Arabidopsis thaliana]	199	176	113	103
AT1G08260	no change	1.1187802366584458	0.00461024312248352	0.05406944122912706	AT1G08260	--	GO:0000166,nucleotide binding; GO:0000278,mitotic cell cycle; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003887,DNA-directed DNA polymerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006272,leading strand elongation; GO:0006281,DNA repair; GO:0006287,base-excision repair, gap-filling; GO:0006297,nucleotide-excision repair, DNA gap filling; GO:0008270,zinc ion binding; GO:0008310,single-stranded DNA 3'-5' exodeoxyribonuclease activity; GO:0008622,epsilon DNA polymerase complex; GO:0010086,embryonic root morphogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0045004,DNA replication proofreading; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0048579,negative regulation of long-day photoperiodism, flowering; GO:0051302,regulation of cell division; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0071897,DNA biosynthetic process; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0110165,cellular anatomical entity;	POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]; K02324;	NP_172303.5 DNA polymerase epsilon catalytic subunit [Arabidopsis thaliana]	119	94	108	53
AT5G64920	up	2.1853687899417835	0.00487833651438039	0.05695122215182621	AT5G64920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_201297.1 COP1-interacting protein 8 [Arabidopsis thaliana]	38	38	40	56
AT3G63210	up	1.9827025153009608	0.00511572500235946	0.05944986361189423	AT3G63210	--	GO:0000932,P-body; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0010162,seed dormancy process; GO:0010494,cytoplasmic stress granule; GO:0019900,kinase binding; GO:0046872,metal ion binding; GO:1905582,response to mannose;	--	NP_567143.1 mediator of aba-regulated dormancy protein (DUF581) [Arabidopsis thaliana]	19	28	46	30
AT5G25760	no change	1.2568749330022406	0.00518527272559619	0.05998417766655598	AT5G25760	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0006635,fatty acid beta-oxidation; GO:0007031,peroxisome organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016558,protein import into peroxisome matrix; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061631,ubiquitin conjugating enzyme activity;	--	NP_001031939.1 peroxin4 [Arabidopsis thaliana]	213	210	366	194
AT4G02610	no change	-0.8765893757225598	0.00529762856741329	0.06100662762021191	AT4G02610	--	GO:0000162,tryptophan biosynthetic process; GO:0004834,tryptophan synthase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009851,auxin biosynthetic process; GO:0016829,lyase activity; GO:0033984,indole-3-glycerol-phosphate lyase activity;	trpA; tryptophan synthase alpha chain [EC:4.2.1.20]; K01695;	NP_192170.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	209	140	176	128
AT1G75300	no change	-0.7948337708716497	0.00535344240758909	0.06137167084375784	AT1G75300	--	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_177665.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	460	435	128	150
AT3G02570	down	-1.677161342283381	0.0053892980952758	0.06150566660303552	AT3G02570	--	GO:0004476,mannose-6-phosphate isomerase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008270,zinc ion binding; GO:0009298,GDP-mannose biosynthetic process; GO:0009416,response to light stimulus; GO:0009793,embryo development ending in seed dormancy; GO:0010043,response to zinc ion; GO:0016853,isomerase activity; GO:0032025,response to cobalt ion; GO:0033591,response to L-ascorbic acid; GO:0046686,response to cadmium ion; GO:0046872,metal ion binding;	manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8]; K01809;	NP_186906.1 Mannose-6-phosphate isomerase, type I [Arabidopsis thaliana]	175	131	98	76
AT1G76880	no change	1.3572768779691398	0.00549603239912922	0.06244376096332089	AT1G76880	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010192,mucilage biosynthetic process; GO:0019760,glucosinolate metabolic process;	--	NP_177814.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	131	80	109	89
AT5G01600	no change	0.7312536498268045	0.00553802751890463	0.06264124460272129	AT5G01600	--	GO:0000302,response to reactive oxygen species; GO:0004322,ferroxidase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006826,iron ion transport; GO:0006879,cellular iron ion homeostasis; GO:0006880,intracellular sequestering of iron ion; GO:0008198,ferrous iron binding; GO:0008199,ferric iron binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009617,response to bacterium; GO:0009908,flower development; GO:0010039,response to iron ion; GO:0010043,response to zinc ion; GO:0015979,photosynthesis; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0042542,response to hydrogen peroxide; GO:0042802,identical protein binding; GO:0046872,metal ion binding; GO:0048366,leaf development; GO:0055072,iron ion homeostasis;	FTH1; ferritin heavy chain [EC:1.16.3.2]; K00522;	NP_195780.1 ferretin 1 [Arabidopsis thaliana]	1190	1000	954	665
AT1G76100	no change	-1.1651014264456756	0.0055887439867356	0.0629351922400093	AT1G76100	--	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046872,metal ion binding;	petE; plastocyanin; K02638;	NP_001321069.1 plastocyanin 1 [Arabidopsis thaliana]	181	167	74	61
AT2G43540	up	2.7474598348804076	0.00569296422947835	0.06379214962050199	AT2G43540	--	GO:0016020,membrane;	--	NP_566001.1 transmembrane protein [Arabidopsis thaliana]	11	5	25	13
AT1G28190	down	-2.753128766869379	0.00571497450431216	0.06379214962050199	AT1G28190	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009620,response to fungus;	--	NP_174140.1 hypothetical protein AT1G28190 [Arabidopsis thaliana]	34	11	11	9
AT5G64620	down	-1.584160828214551	0.00600590296848922	0.06674682556683434	AT5G64620	--	GO:0004857,enzyme inhibitor activity; GO:0005773,vacuole; GO:0043086,negative regulation of catalytic activity;	--	NP_201267.1 cell wall / vacuolar inhibitor of fructosidase 2 [Arabidopsis thaliana]	280	151	100	108
AT4G02400	no change	1.2634715799998195	0.00613480549878156	0.06713384884256382	AT4G02400	--	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:1990904,ribonucleoprotein complex;	UTP14; U3 small nucleolar RNA-associated protein 14; K14567;	NP_567232.3 U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]	136	138	222	131
AT5G13310	up	2.602501078980602	0.00616238421500405	0.06713384884256382	AT5G13310	--	GO:0003674,molecular_function;	--	NP_001331631.1 hypothetical protein AT5G13310 [Arabidopsis thaliana]	42	35	37	29
AT2G37480	no change	1.3645015428090446	0.0061707080066057	0.06713384884256382	AT2G37480	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_850283.1 hypothetical protein AT2G37480 [Arabidopsis thaliana]	56	68	136	100
AT1G23560	down	-1.9862221514309644	0.00617110551110303	0.06713384884256382	AT1G23560	--	--	--	NP_001320352.1 OBP32pep, putative (DUF220) [Arabidopsis thaliana]	57	53	16	19
AT5G19500	down	-1.847874466541505	0.00617262107236146	0.06713384884256382	AT5G19500	--	GO:0003333,amino acid transmembrane transport; GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009706,chloroplast inner membrane; GO:0016020,membrane;	--	NP_197451.2 Tryptophan/tyrosine permease [Arabidopsis thaliana]	55	41	23	11
AT3G19040	up	2.4021297857067516	0.00630189914779439	0.06824822694100738	AT3G19040	--	GO:0001091,RNA polymerase II general transcription initiation factor binding; GO:0004402,histone acetyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006325,chromatin organization; GO:0006366,transcription by RNA polymerase II; GO:0009416,response to light stimulus; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0016570,histone modification; GO:0016573,histone acetylation; GO:0017025,TBP-class protein binding; GO:0051123,RNA polymerase II preinitiation complex assembly;	TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]; K03125;	NP_001327580.1 histone acetyltransferase of the TAFII250 family 2 [Arabidopsis thaliana]	86	60	66	65
AT1G47260	no change	-0.4909106819008184	0.00641254071343047	0.06901560348030644	AT1G47260	--	GO:0004089,carbonate dehydratase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0009853,photorespiration; GO:0009901,anther dehiscence; GO:0016020,membrane; GO:0016829,lyase activity; GO:0031966,mitochondrial membrane; GO:0042802,identical protein binding; GO:0045271,respiratory chain complex I; GO:0046872,metal ion binding; GO:0070207,protein homotrimerization; GO:2000377,regulation of reactive oxygen species metabolic process;	GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-]; K01726;	NP_175159.1 gamma carbonic anhydrase 2 [Arabidopsis thaliana]	970	965	587	486
AT5G49100	up	1.8535890362640792	0.00642699332999317	0.06901560348030644	AT5G49100	--	--	--	NP_568706.1 vitellogenin-like protein [Arabidopsis thaliana]	130	97	88	80
AT1G10760	up	2.3195324382900537	0.00646967937584192	0.06918207567864575	AT1G10760	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009610,response to symbiotic fungus; GO:0009631,cold acclimation; GO:0009941,chloroplast envelope; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0050521,alpha-glucan, water dikinase activity; GO:0102216,maltodextrin water dikinase; GO:0102218,starch, H2O dikinase activity;	R1; alpha-glucan, water dikinase [EC:2.7.9.4]; K08244;	NP_001318975.1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein [Arabidopsis thaliana]	1123	1100	1121	818
AT1G32460	no change	1.2446843757927937	0.00670849414133491	0.07143400748816744	AT1G32460	--	--	--	NP_564403.1 hypothetical protein AT1G32460 [Arabidopsis thaliana]	52	57	79	51
AT5G67250	up	1.975086226018821	0.0067364093505541	0.07143400748816744	AT5G67250	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_569047.1 SKP1/ASK1-interacting protein 2 [Arabidopsis thaliana]	112	122	106	109
AT1G76090	up	1.7609152940709087	0.00700216795609071	0.07394405580187086	AT1G76090	--	GO:0003838,sterol 24-C-methyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008168,methyltransferase activity; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0030797,24-methylenesterol C-methyltransferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143]; K08242;	NP_177736.1 sterol methyltransferase 3 [Arabidopsis thaliana]	320	240	198	138
AT5G53050	up	1.549811271727295	0.0070865048487318	0.0741472943577812	AT5G53050	--	GO:0003824,catalytic activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_001032065.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	55	52	27	29
AT1G18640	no change	-1.1067136132886324	0.0071155041961155	0.0741472943577812	AT1G18640	--	GO:0000096,sulfur amino acid metabolic process; GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0006563,L-serine metabolic process; GO:0006564,L-serine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016311,dephosphorylation; GO:0016787,hydrolase activity; GO:0036424,L-phosphoserine phosphatase activity; GO:0046872,metal ion binding; GO:0048364,root development;	serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3]; K01079;	NP_973858.1 3-phosphoserine phosphatase [Arabidopsis thaliana]	129	89	85	52
AT4G37310	no change	1.1840980864564663	0.00711793737272764	0.0741472943577812	AT4G37310	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_568024.2 cytochrome P450, family 81, subfamily H, polypeptide 1 [Arabidopsis thaliana]	88	56	127	53
AT1G78770	no change	-1.4961215320065762	0.00713795171617147	0.0741472943577812	AT1G78770	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0007091,metaphase/anaphase transition of mitotic cell cycle; GO:0010087,phloem or xylem histogenesis; GO:0016567,protein ubiquitination; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0032875,regulation of DNA endoreduplication; GO:0045842,positive regulation of mitotic metaphase/anaphase transition; GO:0051301,cell division;	APC6, CDC16; anaphase-promoting complex subunit 6; K03353;	NP_565188.1 anaphase promoting complex 6 [Arabidopsis thaliana]	137	113	69	91
AT3G05800	no change	1.457539407610568	0.0072100903709437	0.07433370770604145	AT3G05800	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity;	--	NP_566260.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 [Arabidopsis thaliana]	44	46	67	61
AT1G30020	no change	-1.2900508359639868	0.00723932165552952	0.07433370770604145	AT1G30020	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_174295.1 hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]	97	74	35	37
AT1G15750	no change	-0.9556815460100232	0.00724352043658085	0.07433370770604145	AT1G15750	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009791,post-embryonic development; GO:0009867,jasmonic acid mediated signaling pathway; GO:0010051,xylem and phloem pattern formation; GO:0010072,primary shoot apical meristem specification; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0048367,shoot system development; GO:0048608,reproductive structure development;	--	NP_001031050.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	767	510	431	296
AT3G16460	down	-2.9777071116861187	0.0073100990915344	0.07453471930656069	AT3G16460	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding;	--	NP_188267.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	23	30	3	3
AT3G09550	down	-2.161227837329001	0.00734746883772449	0.07453471930656069	AT3G09550	--	GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001319511.1 Ankyrin repeat family protein [Arabidopsis thaliana]	37	45	8	8
AT4G02440	no change	-1.3103217767710746	0.00735854443431281	0.07453471930656069	AT4G02440	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009585,red, far-red light phototransduction; GO:0010017,red or far-red light signaling pathway; GO:0010099,regulation of photomorphogenesis; GO:0016567,protein ubiquitination; GO:0048366,leaf development; GO:0048573,photoperiodism, flowering;	--	NP_192153.1 F-box family protein [Arabidopsis thaliana]	88	96	93	59
AT1G14380	no change	-1.3134206739611392	0.00738025511404844	0.07453471930656069	AT1G14380	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex;	--	NP_001031046.1 IQ-domain 28 [Arabidopsis thaliana]	126	141	106	74
AT3G62030	no change	-0.8906876432772206	0.0074387356980532	0.07482838874128621	AT3G62030	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003729,mRNA binding; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0006979,response to oxidative stress; GO:0007165,signal transduction; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009642,response to light intensity; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0010555,response to mannitol; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity; GO:0019344,cysteine biosynthetic process; GO:0022626,cytosolic ribosome; GO:0031977,thylakoid lumen; GO:0048046,apoplast;	--	NP_001154684.1 rotamase CYP 4 [Arabidopsis thaliana]	1312	1110	590	505
AT4G22320	down	-2.0051732455528946	0.00761318792675028	0.07600034735064626	AT4G22320	--	GO:0008150,biological_process;	--	NP_001190798.1 golgin family A protein [Arabidopsis thaliana]	39	40	20	8
AT3G27700	no change	1.3843664399481668	0.00761496604102742	0.07600034735064626	AT3G27700	--	GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0046872,metal ion binding;	--	NP_189407.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	74	48	39	59
AT5G27850	no change	0.618130087412093	0.00795327761481526	0.07906676378790951	AT5G27850	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L18e, RPL18; large subunit ribosomal protein L18e; K02883;	NP_198137.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]	2431	2374	2334	1741
AT1G03440	no change	1.0354237949405976	0.00818382718612334	0.0810421797225055	AT1G03440	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0006952,defense response;	--	NP_563685.2 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	89	93	100	68
AT2G47210	no change	-1.0402797528458327	0.00824846433868762	0.08107524082783714	AT2G47210	MYB_related	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000812,Swr1 complex; GO:0003677,DNA binding; GO:0003714,transcription corepressor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0035267,NuA4 histone acetyltransferase complex; GO:0043967,histone H4 acetylation; GO:0043968,histone H2A acetylation; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001323962.1 myb-like transcription factor family protein [Arabidopsis thaliana]	138	131	123	84
AT3G27350	no change	-1.265782889976948	0.00825087912550484	0.08107524082783714	AT3G27350	--	--	--	NP_001189988.1 transcriptional regulator ATRX-like protein [Arabidopsis thaliana]	78	48	59	44
AT2G28080	no change	1.43404481183563	0.0082964662792291	0.08120964107937721	AT2G28080	--	GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_180375.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	121	105	102	50
AT1G70330	no change	-1.357178630032477	0.00836370951605187	0.08155417899751727	AT1G70330	--	GO:0000325,plant-type vacuole; GO:0005337,nucleoside transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1901642,nucleoside transmembrane transport;	SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3; K15014;	NP_564987.2 equilibrative nucleotide transporter 1 [Arabidopsis thaliana]	429	384	344	219
AT5G02500	no change	1.3359623525625697	0.00851216424911879	0.08268495425193637	AT5G02500	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0006952,defense response; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0010187,negative regulation of seed germination; GO:0010286,heat acclimation; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0042742,defense response to bacterium; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0090332,stomatal closure; GO:0098542,defense response to other organism; GO:0140662,ATP-dependent protein folding chaperone;	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283;	NP_195870.1 heat shock cognate protein 70-1 [Arabidopsis thaliana]	11030	9043	7633	6039
AT1G54410	no change	-0.7491754351535189	0.00856904074351254	0.08292094559786849	AT1G54410	--	GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0010730,negative regulation of hydrogen peroxide biosynthetic process; GO:0016151,nickel cation binding; GO:0046872,metal ion binding; GO:0050897,cobalt ion binding;	--	NP_175843.1 dehydrin family protein [Arabidopsis thaliana]	10184	6126	4656	4274
AT1G48970	no change	1.1604897019144804	0.00871447339805801	0.08381492576553123	AT1G48970	--	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0006413,translational initiation; GO:0016740,transferase activity; GO:0044237,cellular metabolic process;	EIF2B4; translation initiation factor eIF-2B subunit delta; K03680;	NP_175327.3 NagB/RpiA/CoA transferase-like superfamily protein [Arabidopsis thaliana]	83	78	63	42
AT3G28930	up	2.0008632362053547	0.00872729089503567	0.08381492576553123	AT3G28930	--	GO:0005829,cytosol; GO:0009617,response to bacterium; GO:0016740,transferase activity; GO:0016746,acyltransferase activity;	--	NP_001326184.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]	57	31	52	22
AT5G27430	down	-1.7563819590268022	0.00897495615231314	0.08586941130690583	AT5G27430	--	GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER;	SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948;	NP_198095.1 Signal peptidase subunit [Arabidopsis thaliana]	47	68	25	9
AT2G36790	up	2.167454743635643	0.00909379902332588	0.08651226547883133	AT2G36790	--	GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity;	UGT73C6; flavonol-3-O-L-rhamnoside-7-O-glucosyltransferase [EC:2.4.1.-]; K22771;	NP_181217.1 UDP-glucosyl transferase 73C6 [Arabidopsis thaliana]	11	12	19	33
AT5G64000	no change	1.2661885737814167	0.00911292697117793	0.08651226547883133	AT5G64000	--	GO:0000103,sulfate assimilation; GO:0003824,catalytic activity; GO:0004441,inositol-1,4-bisphosphate 1-phosphatase activity; GO:0006790,sulfur compound metabolic process; GO:0008152,metabolic process; GO:0008441,3'(2'),5'-bisphosphate nucleotidase activity; GO:0016312,inositol bisphosphate phosphatase activity; GO:0016787,hydrolase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046872,metal ion binding;	SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57]; K15422;	NP_201205.1 Inositol monophosphatase family protein [Arabidopsis thaliana]	121	74	40	48
AT1G13690	down	-1.6074115422737716	0.00914412550640692	0.08651226547883133	AT1G13690	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0008150,biological_process;	--	NP_563931.2 ATPase E1 [Arabidopsis thaliana]	216	162	106	90
AT4G14100	down	-2.1914552229536284	0.00952753998731327	0.08980588617671216	AT4G14100	--	GO:0000325,plant-type vacuole; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0099503,secretory vesicle;	--	NP_567420.1 transferases, transferring glycosyl groups [Arabidopsis thaliana]	70	54	33	5
AT4G16695	no change	-1.48256824456113	0.00962283104134511	0.09036939114473548	AT4G16695	--	GO:0000138,Golgi trans cisterna; GO:0005794,Golgi apparatus; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001328627.1 transmembrane protein [Arabidopsis thaliana]	83	45	32	27
AT5G05440	down	-1.6876930596822015	0.0097939492512352	0.09146572479217194	AT5G05440	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0043086,negative regulation of catalytic activity; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_196163.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	66	52	25	19
AT4G36040	no change	-1.2458592068404686	0.009811451028787	0.09146572479217194	AT4G36040	--	GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma;	--	NP_195328.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	329	288	184	138
AT3G50960	down	-1.8015652112325755	0.01026007496923654	0.09519516292763648	AT3G50960	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005874,microtubule; GO:0043622,cortical microtubule organization; GO:0048487,beta-tubulin binding;	--	NP_001325881.1 thioredoxin domain PLP3A-like protein [Arabidopsis thaliana]	31	41	28	14
AT2G19780	up	2.478844136415347	0.01028631426526523	0.09519516292763648	AT2G19780	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_179568.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	84	64	55	54
AT1G21670	no change	1.1209073429579393	0.01042343352346518	0.09611463158412648	AT1G21670	--	GO:0099503,secretory vesicle;	--	NP_564146.1 DPP6 amino-terminal domain protein [Arabidopsis thaliana]	154	140	66	61
AT4G26790	no change	1.1247102505040982	0.01096287700392029	0.10072390604684887	AT4G26790	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_567758.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	70	101	70	53
AT3G63400	no change	1.137990384778444	0.01114584784181248	0.10181997933984778	AT3G63400	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0008380,RNA splicing; GO:0016018,cyclosporin A binding; GO:0016607,nuclear speck; GO:0016853,isomerase activity;	--	NP_001190169.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	92	96	101	100
AT5G13050	no change	-1.1382080413046691	0.01118307330504032	0.10181997933984778	AT5G13050	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0006952,defense response; GO:0009396,folic acid-containing compound biosynthetic process; GO:0016874,ligase activity; GO:0030272,5-formyltetrahydrofolate cyclo-ligase activity; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046872,metal ion binding;	MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]; K01934;	NP_568284.1 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana]	94	116	62	79
AT2G01420	no change	-1.25987790952506	0.01120219811990466	0.10181997933984778	AT2G01420	--	GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0009630,gravitropism; GO:0009734,auxin-activated signaling pathway; GO:0009926,auxin polar transport; GO:0010015,root morphogenesis; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0048364,root development; GO:0055085,transmembrane transport; GO:0060918,auxin transport;	--	NP_565261.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	137	113	64	58
AT1G48620	up	1.5116766843237863	0.01128234096818139	0.10218347958726565	AT1G48620	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_175295.1 high mobility group A5 [Arabidopsis thaliana]	234	264	231	176
AT1G80910	no change	-1.346106746748137	0.01141438256443575	0.1029994144514399	AT1G80910	--	GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0016192,vesicle-mediated transport; GO:0035658,Mon1-Ccz1 complex; GO:0043231,intracellular membrane-bounded organelle; GO:0050790,regulation of catalytic activity;	--	AAF14679.1 F23A5.27 [Arabidopsis thaliana]	56	68	39	28
AT5G23060	no change	-1.284877959358913	0.01145337300186934	0.1029994144514399	AT5G23060	--	GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009704,de-etiolation; GO:0016020,membrane; GO:0071277,cellular response to calcium ion; GO:0090333,regulation of stomatal closure;	--	NP_197697.1 calcium sensing receptor [Arabidopsis thaliana]	488	472	235	151
AT1G27210	no change	1.27413446609658	0.011510082426343	0.10314492878536252	AT1G27210	--	GO:0005515,protein binding; GO:0005874,microtubule; GO:0008017,microtubule binding;	--	NP_564273.1 ARM repeat superfamily protein [Arabidopsis thaliana]	151	99	94	82
AT5G19510	up	1.671746190326289	0.01173409585958227	0.10478341741276095	AT5G19510	--	GO:0003746,translation elongation factor activity; GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005853,eukaryotic translation elongation factor 1 complex; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity;	--	NP_568375.2 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	1171	1140	1081	807
AT4G27860	up	1.7061841320228135	0.01191542173757943	0.10603058853894982	AT4G27860	--	GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006880,intracellular sequestering of iron ion; GO:0010168,ER body; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0071421,manganese ion transmembrane transport;	--	NP_001190855.1 vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]	20	19	31	35
AT1G72300	down	-2.4705006551634305	0.01199722356978543	0.1063865295648221	AT1G72300	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004888,transmembrane signaling receptor activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009826,unidimensional cell growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031347,regulation of defense response; GO:0042802,identical protein binding; GO:0045851,pH reduction; GO:0106310,protein serine kinase activity;	--	CAD5316993.1 unnamed protein product [Arabidopsis thaliana]	25	30	5	6
AT2G17300	up	2.2765167077915507	0.0121351572902803	0.10723602536028952	AT2G17300	--	--	--	NP_179322.1 hypothetical protein AT2G17300 [Arabidopsis thaliana]	88	68	74	53
AT1G31330	no change	1.053905888610001	0.01243443813179663	0.109367418142409	AT1G31330	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding;	psaF; photosystem I subunit III; K02694;	NP_174418.1 photosystem I subunit F [Arabidopsis thaliana]	1912	1850	1390	944
AT1G16750	down	-1.623014632396223	0.01246229912035308	0.109367418142409	AT1G16750	--	--	--	NP_564005.2 GPI-anchored adhesin-like protein, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]	87	67	47	46
AT5G09760	up	2.069456885663641	0.01259340860317386	0.1101228081842824	AT5G09760	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	--	NP_001331158.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	252	232	211	138
AT4G12080	up	1.9445815413473913	0.01263491551662493	0.1101228081842824	AT4G12080	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0043565,sequence-specific DNA binding; GO:0098687,chromosomal region;	--	NP_192945.2 AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana]	12	8	39	23
AT2G26920	no change	1.230109977790005	0.01278218577027984	0.11083153331548563	AT2G26920	--	GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0006414,translational elongation;	--	NP_180260.1 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	104	103	107	80
AT3G17030	up	2.692350060039301	0.01280332840658262	0.11083153331548563	AT3G17030	--	GO:0003674,molecular_function;	--	NP_188328.5 Nucleic acid-binding proteins superfamily [Arabidopsis thaliana]	13	12	10	10
AT3G06780	no change	-1.362111667626277	0.01314057817778661	0.11301793710564316	AT3G06780	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_566293.1 glycine-rich protein [Arabidopsis thaliana]	72	70	61	29
AT5G50320	no change	-0.8933000358855123	0.0131562681420225	0.11301793710564316	AT5G50320	--	GO:0000049,tRNA binding; GO:0000791,euchromatin; GO:0002098,tRNA wobble uridine modification; GO:0002926,tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation; GO:0003723,RNA binding; GO:0003824,catalytic activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008033,tRNA processing; GO:0009294,DNA-mediated transformation; GO:0009734,auxin-activated signaling pathway; GO:0010928,regulation of auxin mediated signaling pathway; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0033588,elongator holoenzyme complex; GO:0035265,organ growth; GO:0046872,metal ion binding; GO:0051301,cell division; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0090708,specification of plant organ axis polarity; GO:0106261,tRNA uridine(34) acetyltransferase activity; GO:2000025,regulation of leaf formation;	--	NP_568725.1 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana]	151	147	92	74
AT2G29960	no change	-0.9381005329541584	0.0131891266484778	0.11301793710564316	AT2G29960	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005771,multivesicular body; GO:0005777,peroxisome; GO:0005783,endoplasmic reticulum; GO:0005795,Golgi stack; GO:0005829,cytosol; GO:0006457,protein folding; GO:0016018,cyclosporin A binding; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0061083,regulation of protein refolding; GO:0099503,secretory vesicle;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_001318316.1 cyclophilin 5 [Arabidopsis thaliana]	396	357	205	128
AT1G64710	up	2.340094337689372	0.01342739737602007	0.11450748348724524	AT1G64710	--	GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity;	E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1]; K00001;	NP_176652.3 GroES-like zinc-binding alcohol dehydrogenase family protein [Arabidopsis thaliana]	15	18	21	8
AT5G56590	no change	-1.2810938982328954	0.01345294206785317	0.11450748348724524	AT5G56590	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_200470.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	69	58	66	50
AT5G60250	no change	1.0294255100123315	0.01360165974542232	0.1153874135069994	AT5G60250	--	GO:0000151,ubiquitin ligase complex; GO:0000209,protein polyubiquitination; GO:0003676,nucleic acid binding; GO:0004523,RNA-DNA hybrid ribonuclease activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	--	NP_200833.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	34	44	126	91
AT3G21760	no change	0.9477056572621853	0.01389650830912636	0.11749705530473951	AT3G21760	--	GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_188813.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	121	107	70	83
AT3G63470	down	-1.5222243986055677	0.01413391708841487	0.11890920978230345	AT3G63470	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_191906.1 serine carboxypeptidase-like 40 [Arabidopsis thaliana]	166	171	98	60
AT3G02170	up	1.52815799709769	0.01419248428997567	0.11890920978230345	AT3G02170	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0008017,microtubule binding; GO:0009826,unidimensional cell growth; GO:0051513,regulation of monopolar cell growth;	--	NP_566165.2 longifolia2 [Arabidopsis thaliana]	298	280	223	196
AT4G03260	no change	1.302133782774912	0.01420473916331691	0.11890920978230345	AT4G03260	--	GO:0000226,microtubule cytoskeleton organization; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008017,microtubule binding; GO:0009819,drought recovery; GO:0019901,protein kinase binding; GO:0045926,negative regulation of growth; GO:0046777,protein autophosphorylation;	--	NP_001118925.1 Outer arm dynein light chain 1 protein [Arabidopsis thaliana]	34	24	77	43
AT2G42940	down	-1.891722737701354	0.01425041610357664	0.11890920978230345	AT2G42940	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010208,pollen wall assembly; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010529,negative regulation of transposition; GO:0031490,chromatin DNA binding; GO:0035067,negative regulation of histone acetylation; GO:1900111,positive regulation of histone H3-K9 dimethylation;	--	NP_181822.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	49	55	6	7
AT5G57780	up	2.7149481158160143	0.01437666787084453	0.11957065271666452	AT5G57780	--	GO:0006355,regulation of DNA-templated transcription;	--	NP_200586.1 transcription factor [Arabidopsis thaliana]	3	5	18	16
AT4G19000	up	3.6807159105111182	0.01451071173777529	0.1198159888992991	AT4G19000	--	GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0006414,translational elongation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032784,regulation of DNA-templated transcription elongation;	--	NP_001319989.1 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]	2	1	10	12
AT5G53440	no change	1.008362767269297	0.01453322499842489	0.1198159888992991	AT5G53440	--	GO:0003674,molecular_function;	--	NP_200156.1 LOW protein: zinc finger CCCH domain protein [Arabidopsis thaliana]	173	207	202	119
AT4G26540	no change	1.3897667699491052	0.01454740297441391	0.1198159888992991	AT4G26540	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010074,maintenance of meristem identity; GO:0010078,maintenance of root meristem identity; GO:0010082,regulation of root meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042277,peptide binding; GO:0106310,protein serine kinase activity; GO:2000280,regulation of root development;	--	NP_567748.5 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	36	32	41	41
AT4G34290	no change	-1.3976102245009976	0.01465012972187291	0.12027283916827924	AT4G34290	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005886,plasma membrane;	--	NP_195155.1 SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]	324	289	160	117
AT3G27770	down	-1.8186583845727384	0.01475286821750335	0.12064548464433668	AT3G27770	--	GO:0016020,membrane;	--	NP_566825.1 plant/protein [Arabidopsis thaliana]	49	56	18	13
AT4G29580	up	2.867918368521863	0.01479033053400119	0.12064548464433668	AT4G29580	--	GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005829,cytosol; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process;	--	NP_001154274.1 Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]	5	2	16	15
AT4G15490	no change	1.003574151957503	0.01485654397452623	0.1207984166618826	AT4G15490	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0047218,hydroxycinnamate 4-beta-glucosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0050412,cinnamate beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_193284.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	116	110	52	45
AT3G49940	down	-2.0556982660000536	0.01499288125618076	0.12151873502222944	AT3G49940	LBD	GO:0005515,protein binding; GO:0010468,regulation of gene expression;	--	NP_190563.1 LOB domain-containing protein 38 [Arabidopsis thaliana]	17	26	15	17
AT5G06940	up	1.9263311538652592	0.01522195295957114	0.122983715181297	AT5G06940	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_196311.1 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	39	42	24	31
AT3G63410	no change	1.2414298373700277	0.01529769075213342	0.12320450305120116	AT3G63410	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010189,vitamin E biosynthetic process; GO:0010236,plastoquinone biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; GO:0051741,2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity; GO:0051742,2-methyl-6-solanyl-1,4-benzoquinone methyltransferase activity; GO:0071704,organic substance metabolic process; GO:0102550,2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity;	VTE3, APG1; MPBQ/MSBQ methyltransferase [EC:2.1.1.295]; K12502;	NP_191900.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	980	838	1108	885
AT5G62140	no change	-1.4672121211204736	0.01547446189669197	0.12423503320845763	AT5G62140	--	GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_201020.1 ATP-dependent Clp protease ATP-binding subunit [Arabidopsis thaliana]	60	53	20	19
AT4G00895	no change	-1.2413235453794842	0.01570060942410427	0.1256542483784446	AT4G00895	--	GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport;	--	NP_567198.1 ATPase, F1 complex, OSCP/delta subunit protein [Arabidopsis thaliana]	105	135	54	42
AT1G27640	up	1.7164636973676828	0.0159020173636711	0.1268671918198839	AT1G27640	--	GO:0003674,molecular_function;	--	NP_174085.1 hypothetical protein AT1G27640 [Arabidopsis thaliana]	14	17	47	23
AT1G67440	down	-1.7312921740253715	0.01595459611620387	0.12688889723668398	AT1G67440	--	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005739,mitochondrion; GO:0009658,chloroplast organization; GO:0016787,hydrolase activity; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis; GO:0046872,metal ion binding;	rsgA, engC; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]; K06949;	NP_001322691.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	33	47	15	17
AT1G01300	no change	-0.7637514244101924	0.01602800610530154	0.12707562472894837	AT1G01300	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity;	--	NP_171637.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	1626	1377	1137	950
AT5G24830	down	-2.2211324433187087	0.01623712843152033	0.1281288410390198	AT5G24830	--	GO:0005515,protein binding;	--	NP_568460.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	36	13	16	8
AT2G16910	no change	-1.4853767539493674	0.01626153856801705	0.1281288410390198	AT2G16910	bHLH	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0043565,sequence-specific DNA binding; GO:0046983,protein dimerization activity; GO:0048658,anther wall tapetum development;	--	NP_179283.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	488	462	165	137
AT1G03130	no change	-0.9849047156098704	0.01636770126838657	0.12856728311124638	AT1G03130	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding;	psaD; photosystem I subunit II; K02692;	NP_171812.1 photosystem I subunit D-2 [Arabidopsis thaliana]	636	741	247	191
AT1G09770	no change	0.47811489732818147	0.01678138743191093	0.1314111723514256	AT1G09770	MYB	GO:0000398,mRNA splicing, via spliceosome; GO:0000974,Prp19 complex; GO:0002376,immune system process; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006281,DNA repair; GO:0006355,regulation of DNA-templated transcription; GO:0006397,mRNA processing; GO:0006952,defense response; GO:0006974,cellular response to DNA damage stimulus; GO:0007049,cell cycle; GO:0008380,RNA splicing; GO:0042742,defense response to bacterium; GO:0045087,innate immune response; GO:0050832,defense response to fungus;	CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1; K12860;	NP_172448.1 cell division cycle 5 [Arabidopsis thaliana]	452	331	473	370
AT4G09000	no change	0.554436814084267	0.01694079432488879	0.13225252011301222	AT4G09000	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016020,membrane; GO:0019222,regulation of metabolic process; GO:0045309,protein phosphorylated amino acid binding; GO:0048046,apoplast;	YWHAE; 14-3-3 protein epsilon; K06630;	NP_001154216.1 general regulatory factor 1 [Arabidopsis thaliana]	1586	1552	777	598
AT1G15030	no change	-1.1845395411814312	0.0173448504895814	0.13499279662380637	AT1G15030	--	GO:0008150,biological_process;	--	NP_001320245.1 hypothetical protein (DUF789) [Arabidopsis thaliana]	53	76	70	40
AT1G74310	no change	1.4946058149395451	0.01745031246545475	0.13539952812372663	AT1G74310	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009408,response to heat; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016887,ATP hydrolysis activity; GO:0034605,cellular response to heat; GO:0043335,protein unfolding; GO:0045727,positive regulation of translation; GO:0071456,cellular response to hypoxia;	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB; K03695;	NP_565083.1 heat shock protein 101 [Arabidopsis thaliana]	58	49	51	49
AT1G56110	no change	-1.0640518833570385	0.01779313335576388	0.13763989176419172	AT1G56110	--	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex;	NOP56; nucleolar protein 56; K14564;	NP_176007.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	1470	1101	1411	964
AT1G13150	no change	1.4638426552800468	0.01785274244907063	0.13768251373601442	AT1G13150	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172774.1 cytochrome P450, family 86, subfamily C, polypeptide 4 [Arabidopsis thaliana]	86	43	30	35
AT5G67100	no change	-0.8675504339088631	0.01810326279032021	0.13919276072919926	AT5G67100	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003688,DNA replication origin binding; GO:0003697,single-stranded DNA binding; GO:0003887,DNA-directed DNA polymerase activity; GO:0003896,DNA primase activity; GO:0005634,nucleus; GO:0005658,alpha DNA polymerase:primase complex; GO:0006260,DNA replication; GO:0006269,DNA replication, synthesis of RNA primer; GO:0006270,DNA replication initiation; GO:0006272,leading strand elongation; GO:0006273,lagging strand elongation; GO:0009965,leaf morphogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:1902975,mitotic DNA replication initiation;	POLA1; DNA polymerase alpha subunit A [EC:2.7.7.7]; K02320;	NP_001331725.1 DNA-directed DNA polymerase [Arabidopsis thaliana]	148	141	74	51
AT2G23610	down	-2.3403306450782484	0.01851248522554821	0.14191046656331385	AT2G23610	--	GO:0005773,vacuole; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0031408,oxylipin biosynthetic process; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_179942.1 methyl esterase 3 [Arabidopsis thaliana]	19	25	9	6
AT3G05010	down	-1.581485147859948	0.01869478419582811	0.1428775548900377	AT3G05010	--	GO:0002237,response to molecule of bacterial origin; GO:0004930,G protein-coupled receptor activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0008502,melatonin receptor activity; GO:0010015,root morphogenesis; GO:0016020,membrane; GO:0019236,response to pheromone; GO:0090333,regulation of stomatal closure; GO:1904408,melatonin binding;	--	NP_566244.1 Protein of unknown function, transmembrane-40 [Arabidopsis thaliana]	81	56	41	28
AT2G47910	up	1.5223041444144991	0.01893732307951878	0.14429786598016553	AT2G47910	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010275,NAD(P)H dehydrogenase complex assembly;	--	NP_973713.1 chlororespiratory reduction 6 [Arabidopsis thaliana]	44	24	26	39
AT4G34138	no change	-1.4465798787688318	0.01909808788170037	0.1450884586833655	AT4G34138	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567955.1 UDP-glucosyl transferase 73B1 [Arabidopsis thaliana]	54	40	46	31
AT1G78130	up	2.767441649234069	0.01971715910309425	0.14934574380171092	AT1G78130	--	GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_177937.1 Major facilitator superfamily protein [Arabidopsis thaliana]	3	9	17	10
AT3G56030	up	2.6994861113200503	0.02042038652997094	0.15379987292628916	AT3G56030	--	GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_191162.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	7	5	15	10
AT2G21180	no change	-1.40680296512911	0.0204494994039222	0.15379987292628916	AT2G21180	--	GO:0016020,membrane;	--	NP_565499.1 transmembrane protein [Arabidopsis thaliana]	96	70	26	26
AT2G01750	no change	0.9000150516359877	0.02053276603824315	0.15379987292628916	AT2G01750	--	GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0008017,microtubule binding;	--	NP_178284.1 microtubule-associated proteins 70-3 [Arabidopsis thaliana]	86	100	86	78
AT1G72660	no change	-1.3749262989467006	0.02054693783691093	0.15379987292628916	AT1G72660	--	GO:0000166,nucleotide binding; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0016787,hydrolase activity; GO:0019003,GDP binding;	K06944; uncharacterized protein; K06944;	NP_001031270.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	125	122	31	55
AT5G42320	up	1.73382096111622	0.02119837234139581	0.15821072612566672	AT5G42320	--	GO:0004181,metallocarboxypeptidase activity; GO:0006508,proteolysis; GO:0008270,zinc ion binding; GO:0016020,membrane;	--	NP_199047.2 Zn-dependent exopeptidases superfamily protein [Arabidopsis thaliana]	21	27	17	37
AT1G55480	no change	-0.7674954114209664	0.02130717497790517	0.15855777870984988	AT1G55480	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009575,chromoplast stroma; GO:0009579,thylakoid; GO:0009611,response to wounding; GO:0009644,response to high light intensity; GO:0009941,chloroplast envelope; GO:0010206,photosystem II repair; GO:0010207,photosystem II assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0035448,extrinsic component of thylakoid membrane;	--	NP_564691.1 protein containing PDZ domain, a K-box domain, and a TPR region [Arabidopsis thaliana]	177	162	92	83
AT3G21790	up	1.6210728551307731	0.02143233286038916	0.15902416072796044	AT3G21790	--	GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	BAB02841.1 UTP-glucose glucosyltransferase [Arabidopsis thaliana]	43	42	40	25
AT4G26240	no change	-1.0863155636534216	0.0217786347594567	0.16097572354496523	AT4G26240	--	GO:0016020,membrane;	--	NP_567740.1 histone-lysine N-methyltransferase [Arabidopsis thaliana]	83	54	50	49
AT4G31700	no change	-1.2110941089759557	0.02182185643340393	0.16097572354496523	AT4G31700	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S6e, RPS6; small subunit ribosomal protein S6e; K02991;	NP_194898.1 ribosomal protein S6 [Arabidopsis thaliana]	1698	1324	1782	1374
AT1G03750	down	-2.038657899648074	0.02248481387665384	0.1653868535146937	AT1G03750	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0006974,cellular response to DNA damage stimulus; GO:0016787,hydrolase activity; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_171871.2 switch 2 [Arabidopsis thaliana]	19	22	21	8
AT5G23240	no change	1.258154963475974	0.02277369894683995	0.16699469500392783	AT5G23240	--	GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_197715.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	182	128	168	144
AT4G37670	down	-2.0535689481172703	0.02283463805947618	0.16699469500392783	AT4G37670	--	GO:0004042,acetyl-CoA:L-glutamate N-acetyltransferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006526,arginine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0103045,methione N-acyltransferase activity;	argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]; K14682;	NP_974701.1 N-acetyl-l-glutamate synthase 2 [Arabidopsis thaliana]	24	21	22	7
AT5G26000	no change	0.9085996604291068	0.02299415541674293	0.1676794427954463	AT5G26000	--	GO:0000325,plant-type vacuole; GO:0002213,defense response to insect; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005773,vacuole; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009625,response to insect; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0099503,secretory vesicle; GO:0102483,scopolin beta-glucosidase activity; GO:0102799,glucosinolate glucohydrolase activity;	E3.2.1.147; myrosinase [EC:3.2.1.147]; K01237;	NP_851077.1 thioglucoside glucohydrolase 1 [Arabidopsis thaliana]	13183	12233	15577	12058
AT5G53880	up	1.847892013460697	0.02313999968983405	0.16824458566132944	AT5G53880	--	GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_568802.1 hypothetical protein AT5G53880 [Arabidopsis thaliana]	106	69	71	49
AT3G44380	up	1.726211026837099	0.02320387016390044	0.16824458566132944	AT3G44380	--	GO:0005575,cellular_component; GO:0009269,response to desiccation;	--	NP_190024.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	25	36	35	32
AT4G24220	no change	-0.7784060511952382	0.02365009436111899	0.17076537182774654	AT4G24220	--	GO:0005829,cytosol; GO:0008202,steroid metabolic process; GO:0009611,response to wounding; GO:0010051,xylem and phloem pattern formation; GO:0016491,oxidoreductase activity; GO:0035671,enone reductase activity; GO:0046983,protein dimerization activity; GO:0047787,delta4-3-oxosteroid 5beta-reductase activity;	VEP1; Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3]; K22419;	NP_194153.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	416	306	240	222
AT1G13110	up	2.010738513892804	0.02373885231373389	0.17076537182774654	AT1G13110	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172770.1 cytochrome P450, family 71 subfamily B, polypeptide 7 [Arabidopsis thaliana]	7	6	18	38
AT1G43670	up	1.7953859274711803	0.02375282578664922	0.17076537182774654	AT1G43670	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0005986,sucrose biosynthetic process; GO:0006000,fructose metabolic process; GO:0006002,fructose 6-phosphate metabolic process; GO:0006094,gluconeogenesis; GO:0009737,response to abscisic acid; GO:0009750,response to fructose; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0042132,fructose 1,6-bisphosphate 1-phosphatase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046872,metal ion binding;	FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11]; K03841;	NP_175032.1 Inositol monophosphatase family protein [Arabidopsis thaliana]	458	431	239	232
AT1G78100	no change	-1.2180394696358112	0.02389200741561476	0.17128213766968894	AT1G78100	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009736,cytokinin-activated signaling pathway; GO:0010540,basipetal auxin transport; GO:0010541,acropetal auxin transport; GO:0016567,protein ubiquitination;	--	NP_565169.1 F-box family protein [Arabidopsis thaliana]	100	84	65	42
AT2G46200	up	1.6408649852609756	0.02398036647198158	0.17143267604267734	AT2G46200	--	GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:1990904,ribonucleoprotein complex;	--	NP_850448.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]	25	13	25	36
AT4G29380	no change	-0.7426680267340364	0.02406049813136811	0.1715237191717979	AT4G29380	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005770,late endosome; GO:0005794,Golgi apparatus; GO:0005942,phosphatidylinositol 3-kinase complex; GO:0006468,protein phosphorylation; GO:0006623,protein targeting to vacuole; GO:0006914,autophagy; GO:0009555,pollen development; GO:0009846,pollen germination; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016236,macroautophagy; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030242,autophagy of peroxisome; GO:0032991,protein-containing complex; GO:0034271,phosphatidylinositol 3-kinase complex, class III, type I; GO:0034272,phosphatidylinositol 3-kinase complex, class III, type II; GO:0045324,late endosome to vacuole transport; GO:0048015,phosphatidylinositol-mediated signaling; GO:0071561,nucleus-vacuole junction; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:0106310,protein serine kinase activity;	PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]; K08333;	NP_194667.1 protein kinase family protein / WD-40 repeat family protein [Arabidopsis thaliana]	115	156	155	122
AT3G50430	down	-2.5719159996404706	0.02515280639815638	0.1786134809402114	AT3G50430	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190612.3 golgin [Arabidopsis thaliana]	20	20	4	4
AT5G13650	no change	1.120393136404639	0.02527663839761234	0.1786134809402114	AT5G13650	--	GO:0000302,response to reactive oxygen species; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0006364,rRNA processing; GO:0006412,translation; GO:0006414,translational elongation; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010468,regulation of gene expression; GO:0031425,chloroplast RNA processing; GO:0050821,protein stabilization; GO:1990904,ribonucleoprotein complex;	typA, bipA; GTP-binding protein; K06207;	NP_568289.3 elongation factor family protein [Arabidopsis thaliana]	984	932	712	679
AT2G41940	up	2.415267771356719	0.02539312744420607	0.1786134809402114	AT2G41940	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010026,trichome differentiation; GO:0010090,trichome morphogenesis; GO:0030154,cell differentiation; GO:0046872,metal ion binding;	--	NP_181725.1 zinc finger protein 8 [Arabidopsis thaliana]	9	7	13	13
AT5G23590	no change	-1.1896420742425509	0.02540594369838953	0.1786134809402114	AT5G23590	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding;	--	NP_001031930.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	63	50	46	34
AT2G04410	up	1.7256776488457497	0.02543636241072417	0.1786134809402114	AT2G04410	--	GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0009506,plasmodesma;	--	NP_178522.2 RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]	87	104	88	97
AT1G06730	no change	-1.493298835132232	0.02567504557699867	0.1786134809402114	AT1G06730	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_172158.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	75	72	30	33
AT3G53950	no change	1.300834819430996	0.02568197611650859	0.1786134809402114	AT3G53950	--	GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190963.1 glyoxal oxidase-related protein [Arabidopsis thaliana]	97	85	60	63
AT5G66560	no change	0.70060142506957	0.0256820925502946	0.1786134809402114	AT5G66560	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_201457.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	192	176	186	115
AT3G12780	no change	1.2870930803420038	0.02568665384051763	0.1786134809402114	AT3G12780	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004618,phosphoglycerate kinase activity; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010319,stromule; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019375,galactolipid biosynthetic process; GO:0043531,ADP binding; GO:0048046,apoplast;	PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3]; K00927;	NP_187884.1 phosphoglycerate kinase 1 [Arabidopsis thaliana]	1991	1899	1239	966
AT5G49700	no change	-1.4833268826651371	0.02598071759164265	0.18016601163686796	AT5G49700	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_199781.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]	34	51	26	20
AT5G54090	up	1.92609650023401	0.02636027951510678	0.18192566209344888	AT5G54090	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0004519,endonuclease activity; GO:0005524,ATP binding; GO:0006298,mismatch repair; GO:0016887,ATP hydrolysis activity; GO:0030983,mismatched DNA binding; GO:0045910,negative regulation of DNA recombination; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0140664,ATP-dependent DNA damage sensor activity;	--	NP_200220.2 DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana]	12	11	24	17
AT1G09760	no change	1.3050010981441815	0.02643694061572553	0.18192566209344888	AT1G09760	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0015030,Cajal body; GO:0030620,U2 snRNA binding; GO:1990904,ribonucleoprotein complex;	SNRPA1; U2 small nuclear ribonucleoprotein A'; K11092;	NP_172447.1 U2 small nuclear ribonucleoprotein A [Arabidopsis thaliana]	142	121	174	151
AT5G65630	no change	1.0382230118308169	0.02654746291193152	0.18192566209344888	AT5G65630	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009294,DNA-mediated transformation;	--	NP_201366.3 global transcription factor group E7 [Arabidopsis thaliana]	103	79	76	53
AT3G26450	no change	1.3170340466656487	0.02655229101501866	0.18192566209344888	AT3G26450	--	GO:0005829,cytosol; GO:0006952,defense response;	--	NP_189276.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	81	61	74	46
AT4G34950	no change	1.287163222163514	0.02659188459676345	0.18192566209344888	AT4G34950	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_195221.1 Major facilitator superfamily protein [Arabidopsis thaliana]	384	396	502	337
AT3G05820	down	-1.67081136391924	0.0272162555146972	0.18569804365926107	AT3G05820	--	GO:0004564,beta-fructofuranosidase activity; GO:0004575,sucrose alpha-glucosidase activity; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0005987,sucrose catabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033926,glycopeptide alpha-N-acetylgalactosaminidase activity;	--	NP_001326532.1 invertase H [Arabidopsis thaliana]	49	36	34	17
AT4G26690	no change	0.9759804122308128	0.02732496988610362	0.18594130577575865	AT4G26690	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity; GO:0008889,glycerophosphodiester phosphodiesterase activity; GO:0009932,cell tip growth; GO:0010053,root epidermal cell differentiation; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0048765,root hair cell differentiation; GO:0071555,cell wall organization;	--	CAB36515.1 putative protein [Arabidopsis thaliana]	622	534	479	504
AT1G43170	no change	-1.0620427057552773	0.02748898523444602	0.18655857979110704	AT1G43170	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L3e, RPL3; large subunit ribosomal protein L3e; K02925;	NP_001031146.1 ribosomal protein 1 [Arabidopsis thaliana]	3002	2792	3355	2438
AT3G11650	no change	-1.1080487728690889	0.02780726625723734	0.188216735703907	AT3G11650	--	GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0016020,membrane; GO:0051607,defense response to virus; GO:0098542,defense response to other organism;	--	NP_566395.1 NDR1/HIN1-like 2 [Arabidopsis thaliana]	108	99	53	28
AT2G25880	up	2.0024710520908826	0.02789947384456704	0.18833994942817808	AT2G25880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_001325078.1 ataurora2 [Arabidopsis thaliana]	29	35	22	20
AT3G45140	up	1.555578191751124	0.02812150650872944	0.18884627983643665	AT3G45140	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0009695,jasmonic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0009941,chloroplast envelope; GO:0010597,green leaf volatile biosynthetic process; GO:0016165,linoleate 13S-lipoxygenase activity; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0031408,oxylipin biosynthetic process; GO:0034440,lipid oxidation; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0080027,response to herbivore; GO:1901149,salicylic acid binding;	LOX2S; lipoxygenase [EC:1.13.11.12]; K00454;	NP_566875.1 lipoxygenase 2 [Arabidopsis thaliana]	7418	7766	7296	5431
AT1G04040	no change	1.220464248793995	0.02820814678840454	0.18884627983643665	AT1G04040	--	GO:0000325,plant-type vacuole; GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0045735,nutrient reservoir activity;	--	NP_563698.1 HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	39	42	45	48
AT1G47250	no change	-0.9532578046231888	0.02824384997654802	0.18884627983643665	AT1G47250	--	GO:0000502,proteasome complex; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005839,proteasome core complex; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009506,plasmodesma; GO:0010498,proteasomal protein catabolic process; GO:0019773,proteasome core complex, alpha-subunit complex; GO:0051603,proteolysis involved in protein catabolic process;	PSMA1; 20S proteasome subunit alpha 6 [EC:3.4.25.1]; K02725;	NP_175158.1 20S proteasome alpha subunit F2 [Arabidopsis thaliana]	165	154	110	73
AT1G15820	no change	-0.6039073220105866	0.02829833400551414	0.18884627983643665	AT1G15820	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009783,photosystem II antenna complex; GO:0009941,chloroplast envelope; GO:0010196,nonphotochemical quenching; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding;	LHCB6; light-harvesting complex II chlorophyll a/b binding protein 6; K08917;	NP_173034.1 light harvesting complex photosystem II subunit 6 [Arabidopsis thaliana]	5997	5448	3329	2822
AT5G57035	no change	0.771752860614364	0.02835997256510033	0.18884627983643665	AT5G57035	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_680448.2 U-box domain-containing protein kinase family protein [Arabidopsis thaliana]	129	118	91	93
AT5G53280	no change	-1.3142287577932017	0.02841969555102367	0.18884627983643665	AT5G53280	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009739,response to gibberellin; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0070273,phosphatidylinositol-4-phosphate binding;	--	NP_200140.1 plastid division1 [Arabidopsis thaliana]	49	46	26	24
AT3G24730	up	2.240499926377405	0.0287723626276456	0.18982745113536004	AT3G24730	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0006376,mRNA splice site selection; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046540,U4/U6 x U5 tri-snRNP complex;	--	NP_189117.2 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]	18	7	13	13
AT3G01690	no change	1.2226769299048108	0.02882684954612312	0.18982745113536004	AT3G01690	--	GO:0005515,protein binding;	--	NP_186818.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	61	67	77	43
AT4G26670	no change	-0.9656780646835132	0.02883177883587058	0.18982745113536004	AT4G26670	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008320,protein transmembrane transporter activity; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0042721,TIM22 mitochondrial import inner membrane insertion complex; GO:0042803,protein homodimerization activity; GO:0045036,protein targeting to chloroplast; GO:0045039,protein insertion into mitochondrial inner membrane; GO:0071806,protein transmembrane transport;	--	NP_567754.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana]	162	134	113	76
AT3G54980	no change	-1.0782679967342697	0.02886570671488578	0.18982745113536004	AT3G54980	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_001325869.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	82	54	42	42
AT3G13440	up	2.0652440429073664	0.02895006455864014	0.1898915317055133	AT3G13440	--	GO:0003676,nucleic acid binding; GO:0005829,cytosol; GO:0006415,translational termination; GO:0006479,protein methylation; GO:0006807,nitrogen compound metabolic process; GO:0008168,methyltransferase activity; GO:0008276,protein methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0035657,eRF1 methyltransferase complex; GO:0043414,macromolecule methylation; GO:0044238,primary metabolic process; GO:0055072,iron ion homeostasis;	--	NP_001327233.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	13	15	14	14
AT1G76810	down	-1.582599710371566	0.02907354769349761	0.1900285530199873	AT1G76810	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation;	EIF5B; translation initiation factor 5B; K03243;	NP_177807.3 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]	269	337	69	67
AT4G17950	no change	0.5862009767328606	0.02912028906789589	0.1900285530199873	AT4G17950	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0005634,nucleus;	--	NP_567546.1 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	196	156	213	155
AT2G04039	down	-2.6562150557165456	0.02930127207027629	0.190720556058448	AT2G04039	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009579,thylakoid;	--	NP_565308.1 DUF2996 family protein [Arabidopsis thaliana]	8	14	11	5
AT1G22400	up	1.6640306464783947	0.02955925390725269	0.19134100422139833	AT1G22400	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0050403,trans-zeatin O-beta-D-glucosyltransferase activity; GO:0050502,cis-zeatin O-beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173656.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	164	113	59	53
AT1G22730	up	1.981676444785499	0.02960388218024166	0.19134100422139833	AT1G22730	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0009646,response to absence of light; GO:0043022,ribosome binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0090549,response to carbon starvation;	--	NP_173687.1 MA3 domain-containing protein [Arabidopsis thaliana]	72	58	77	47
AT5G04180	no change	-0.820261587895244	0.02962214367906913	0.19134100422139833	AT5G04180	--	GO:0004089,carbonate dehydratase activity; GO:0006730,one-carbon metabolic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010037,response to carbon dioxide; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0046872,metal ion binding;	cah; carbonic anhydrase [EC:4.2.1.1]; K01674;	NP_196038.1 alpha carbonic anhydrase 3 [Arabidopsis thaliana]	198	174	93	63
AT1G68400	no change	-1.155251614067052	0.0300683822254659	0.1934503249539284	AT1G68400	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_177007.1 leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	142	111	72	71
AT1G29930	no change	0.4341991522648585	0.03010071853900025	0.1934503249539284	AT1G29930	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_174286.1 chlorophyll A/B binding protein 1 [Arabidopsis thaliana]	4628	4645	3266	2250
AT3G63490	no change	-0.5786651836420948	0.03049734265019133	0.1955056348733928	AT3G63490	--	GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L1, MRPL1, rplA; large subunit ribosomal protein L1; K02863;	NP_191908.1 Ribosomal protein L1p/L10e family [Arabidopsis thaliana]	585	580	292	253
AT3G09250	no change	-1.1283957842798085	0.03099919182255208	0.198174631788299	AT3G09250	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0009507,chloroplast;	--	NP_566347.1 Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]	84	50	38	30
AT3G60160	no change	-0.8311254200952414	0.03110088844666906	0.198174631788299	AT3G60160	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0009624,response to nematode; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	--	NP_191575.2 multidrug resistance-associated protein 9 [Arabidopsis thaliana]	204	216	132	73
AT5G06310	down	-2.114855774454769	0.03114728986849493	0.198174631788299	AT5G06310	--	GO:0000723,telomere maintenance; GO:0000781,chromosome, telomeric region; GO:0000783,nuclear telomere cap complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0010521,telomerase inhibitor activity; GO:0016233,telomere capping; GO:0032210,regulation of telomere maintenance via telomerase; GO:0043047,single-stranded telomeric DNA binding; GO:0051974,negative regulation of telomerase activity; GO:0098505,G-rich strand telomeric DNA binding;	--	NP_196249.2 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	16	14	12	11
AT2G20270	no change	0.6636502428745761	0.03123256945812649	0.19822166900481775	AT2G20270	--	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015038,glutathione disulfide oxidoreductase activity; GO:0034599,cellular response to oxidative stress; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	--	NP_179617.1 Thioredoxin superfamily protein [Arabidopsis thaliana]	167	204	172	107
AT4G33620	up	1.9171394067407024	0.03191847487875408	0.20128463097302093	AT4G33620	--	GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0070139,SUMO-specific endopeptidase activity;	--	NP_001320126.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	24	15	17	17
AT3G43270	no change	-1.278163991025302	0.03193677674263347	0.20128463097302093	AT3G43270	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_189913.3 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	1050	941	684	608
AT5G64770	up	2.5602756930107606	0.03195245222518682	0.20128463097302093	AT5G64770	--	GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005783,endoplasmic reticulum; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0008284,positive regulation of cell population proliferation; GO:0009733,response to auxin; GO:0009786,regulation of asymmetric cell division; GO:0009958,positive gravitropism; GO:0010082,regulation of root meristem growth; GO:0022622,root system development; GO:0030154,cell differentiation; GO:0032880,regulation of protein localization; GO:0048527,lateral root development; GO:2000012,regulation of auxin polar transport; GO:2000023,regulation of lateral root development; GO:2000067,regulation of root morphogenesis; GO:2000280,regulation of root development;	--	NP_201282.1 root meristem growth factor [Arabidopsis thaliana]	10	7	11	8
AT3G25910	no change	0.7277861893393185	0.03211955315099422	0.2017781263079416	AT3G25910	--	GO:0001216,DNA-binding transcription activator activity; GO:0005634,nucleus; GO:0006873,cellular ion homeostasis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0045893,positive regulation of DNA-templated transcription; GO:0071472,cellular response to salt stress;	--	NP_566784.1 MAP kinase kinase kinase, putative (DUF1644) [Arabidopsis thaliana]	161	158	160	138
AT5G47560	no change	-0.7161955453354545	0.03218935924598203	0.2017781263079416	AT5G47560	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0015140,malate transmembrane transporter activity; GO:0015743,malate transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0051453,regulation of intracellular pH; GO:0055085,transmembrane transport; GO:0071423,malate transmembrane transport; GO:0098656,anion transmembrane transport;	--	NP_199567.1 tonoplast dicarboxylate transporter [Arabidopsis thaliana]	221	239	138	119
AT1G79530	no change	1.1377267655037286	0.0327640342295994	0.20366004846000585	AT1G79530	--	GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006096,glycolytic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0048658,anther wall tapetum development; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0080022,primary root development; GO:0080144,amino acid homeostasis;	GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]; K00134;	NP_178071.1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 [Arabidopsis thaliana]	427	402	271	246
AT4G37200	no change	-1.3057055403773845	0.03278216734126427	0.20366004846000585	AT4G37200	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0031977,thylakoid lumen;	--	NP_195437.1 Thioredoxin superfamily protein [Arabidopsis thaliana]	74	81	69	37
AT4G30850	no change	-1.0824531393490302	0.03279218281079086	0.20366004846000585	AT4G30850	--	GO:0009725,response to hormone; GO:0009744,response to sucrose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0038023,signaling receptor activity;	--	NP_194814.2 heptahelical transmembrane protein2 [Arabidopsis thaliana]	104	94	21	31
AT1G77710	no change	1.166478446402932	0.03288765481483773	0.20366004846000585	AT1G77710	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0071569,protein ufmylation; GO:1990592,protein K69-linked ufmylation;	--	NP_177894.1 ubiquitin-fold modifier [Arabidopsis thaliana]	172	164	208	137
AT5G63650	no change	-0.7742638808694879	0.03300303263526362	0.20366004846000585	AT5G63650	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0006970,response to osmotic stress; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1]; K14498;	NP_201170.1 SNF1-related protein kinase 2.5 [Arabidopsis thaliana]	226	163	112	88
AT1G06400	no change	0.7578917118382917	0.0330133696283053	0.20366004846000585	AT1G06400	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005576,extracellular region; GO:0005768,endosome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009733,response to auxin; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis;	--	NP_172128.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]	95	102	111	119
AT3G22520	no change	-0.606014637905413	0.03304974460274358	0.20366004846000585	AT3G22520	--	GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_188891.1 spindle assembly abnormal protein [Arabidopsis thaliana]	221	269	168	120
AT3G15070	no change	-1.3728957047240904	0.0334689136690341	0.2052980504202581	AT3G15070	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0060776,simple leaf morphogenesis; GO:0061630,ubiquitin protein ligase activity;	--	NP_001189897.1 RING/U-box superfamily protein [Arabidopsis thaliana]	45	33	26	20
AT5G04140	no change	-0.9625247658008034	0.0334788436972766	0.2052980504202581	AT5G04140	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005886,plasma membrane; GO:0006537,glutamate biosynthetic process; GO:0006541,glutamine metabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015930,glutamate synthase activity; GO:0016040,glutamate synthase (NADH) activity; GO:0016041,glutamate synthase (ferredoxin) activity; GO:0016491,oxidoreductase activity; GO:0016638,oxidoreductase activity, acting on the CH-NH2 group of donors; GO:0019676,ammonia assimilation cycle; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0051536,iron-sulfur cluster binding; GO:0051538,3 iron, 4 sulfur cluster binding; GO:0080114,positive regulation of glycine hydroxymethyltransferase activity; GO:0097054,L-glutamate biosynthetic process;	GLU, gltS; glutamate synthase (ferredoxin) [EC:1.4.7.1]; K00284;	NP_568134.1 glutamate synthase 1 [Arabidopsis thaliana]	1161	1144	903	593
AT3G02030	no change	-0.6332100280756752	0.03355755951859621	0.2052980504202581	AT3G02030	--	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0008374,O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0044249,cellular biosynthetic process; GO:1901576,organic substance biosynthetic process;	--	NP_186852.4 transferase [Arabidopsis thaliana]	278	211	108	73
AT1G80850	no change	-1.3954713669810026	0.03398909233958349	0.2071010950503603	AT1G80850	--	GO:0003824,catalytic activity; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0008725,DNA-3-methyladenine glycosylase activity;	tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]; K01246;	NP_178200.1 DNA glycosylase superfamily protein [Arabidopsis thaliana]	53	41	30	24
AT2G19570	no change	-0.7019361349698894	0.03401503250728904	0.2071010950503603	AT2G19570	--	GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006216,cytidine catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0016787,hydrolase activity; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:0047844,deoxycytidine deaminase activity; GO:0071704,organic substance metabolic process;	cdd, CDA; cytidine deaminase [EC:3.5.4.5]; K01489;	NP_179547.1 cytidine deaminase 1 [Arabidopsis thaliana]	212	151	96	91
AT4G23530	no change	-1.4618022877731054	0.03434811642653338	0.20862996731629463	AT4G23530	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_194084.1 ROH1, putative (DUF793) [Arabidopsis thaliana]	45	30	20	17
AT5G21950	down	-1.5381864651066843	0.03495695572017774	0.21179612864521677	AT5G21950	--	GO:0003674,molecular_function;	--	NP_680183.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	61	40	21	20
AT2G43750	no change	-0.9507213005487128	0.03503582324543664	0.21179612864521677	AT2G43750	--	GO:0004124,cysteine synthase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006535,cysteine biosynthetic process from serine; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009509,chromoplast; GO:0009536,plastid; GO:0009567,double fertilization forming a zygote and endosperm; GO:0009570,chloroplast stroma; GO:0009860,pollen tube growth; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019344,cysteine biosynthetic process; GO:0048046,apoplast;	cysK; cysteine synthase [EC:2.5.1.47]; K01738;	NP_001189745.1 O-acetylserine (thiol) lyase B [Arabidopsis thaliana]	734	752	418	322
AT4G38440	up	1.8666747795939995	0.03519116034315867	0.21223104993682188	AT4G38440	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0030154,cell differentiation;	--	NP_195557.2 RPAP1-like, carboxy-terminal protein [Arabidopsis thaliana]	130	117	123	61
AT3G17160	no change	-0.9221308164315598	0.0354906589315536	0.21353126945816528	AT3G17160	--	GO:0008150,biological_process;	--	NP_188341.2 hypothetical protein AT3G17160 [Arabidopsis thaliana]	125	136	55	73
AT4G20420	no change	-1.023337753278323	0.03583782245625044	0.2147531808087891	AT4G20420	--	GO:0008150,biological_process;	--	NP_193775.1 Tapetum specific protein TAP35/TAP44 [Arabidopsis thaliana]	246	200	62	49
AT5G49360	no change	-0.8172480042860784	0.03586251545922805	0.2147531808087891	AT5G49360	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0009536,plastid; GO:0010214,seed coat development; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; GO:0048046,apoplast;	--	NP_199747.1 beta-xylosidase 1 [Arabidopsis thaliana]	2567	2424	1724	1469
AT2G06990	no change	0.7435844147730513	0.03605973866724078	0.2154273119909103	AT2G06990	--	GO:0000166,nucleotide binding; GO:0000460,maturation of 5.8S rRNA; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006397,mRNA processing; GO:0006401,RNA catabolic process; GO:0009908,flower development; GO:0010093,specification of floral organ identity; GO:0016070,RNA metabolic process; GO:0016607,nuclear speck; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0060149,negative regulation of post-transcriptional gene silencing;	MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]; K12598;	NP_565338.1 RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana]	231	220	249	236
AT4G01037	up	1.6672637196866766	0.03614644583684741	0.21543958935544885	AT4G01037	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015979,photosynthesis;	--	NP_001118908.1 Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]	167	136	124	131
AT1G15700	up	1.6481006907152498	0.03638802558985239	0.2159401206687921	AT1G15700	--	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009544,chloroplast ATP synthase complex; GO:0009579,thylakoid; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0030234,enzyme regulator activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0050790,regulation of catalytic activity; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; GO:2000067,regulation of root morphogenesis;	ATPF1G, atpG; F-type H+-transporting ATPase subunit gamma; K02115;	NP_173022.1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana]	40	39	35	34
AT1G06000	no change	0.47679707832463336	0.03640012250173351	0.2159401206687921	AT1G06000	--	GO:0005576,extracellular region; GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0103077,quercetin 3-glucoside 7-O-rhamnosyltransferase activity; GO:0103078,quercetin 3-rhamnoside 7-O-rhamnosyltransferase activity;	--	NP_563756.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	780	697	367	286
AT1G03090	no change	-1.1464872124961776	0.0367179926290948	0.21731928195592157	AT1G03090	--	GO:0000166,nucleotide binding; GO:0004485,methylcrotonoyl-CoA carboxylase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006552,leucine catabolic process; GO:0016874,ligase activity; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0050897,cobalt ion binding;	E6.4.1.4A; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]; K01968;	NP_849583.1 methylcrotonyl-CoA carboxylase alpha chain [Arabidopsis thaliana]	129	144	76	67
AT4G21800	no change	1.108185776679841	0.03721677417390403	0.21948126055990716	AT4G21800	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0009524,phragmoplast; GO:0009793,embryo development ending in seed dormancy; GO:0016787,hydrolase activity; GO:0051301,cell division;	--	NP_193911.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	96	85	86	83
AT3G16990	no change	1.2397797002830693	0.03729802413991712	0.21948126055990716	AT3G16990	--	GO:0005829,cytosol; GO:0006772,thiamine metabolic process; GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0016787,hydrolase activity; GO:0050334,thiaminase activity;	TENA_E; formylaminopyrimidine deformylase / aminopyrimidine aminohydrolase [EC:3.5.1.- 3.5.99.-]; K20896;	NP_188324.1 heme oxygenase-like, multi-helical [Arabidopsis thaliana]	63	42	69	58
AT5G19340	no change	1.1225170076657711	0.03734199835852252	0.21948126055990716	AT5G19340	--	GO:0005515,protein binding;	--	NP_197435.2 hypothetical protein AT5G19340 [Arabidopsis thaliana]	32	36	50	49
AT4G36960	no change	-1.206234803989438	0.03784526701018202	0.2200584614502596	AT4G36960	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:1990904,ribonucleoprotein complex;	MSI; RNA-binding protein Musashi; K14411;	NP_001154290.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	69	88	47	47
AT1G73220	no change	-0.727593215640165	0.03786666549966165	0.2200584614502596	AT1G73220	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0010150,leaf senescence; GO:0015226,carnitine transmembrane transporter activity; GO:0015839,cadaverine transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902603,carnitine transmembrane transport;	--	NP_565059.2 organic cation/carnitine transporter1 [Arabidopsis thaliana]	390	399	212	128
AT3G62830	no change	-0.7831629418753341	0.03789208043835892	0.2200584614502596	AT3G62830	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0008460,dTDP-glucose 4,6-dehydratase activity; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0019305,dTDP-rhamnose biosynthetic process; GO:0032580,Golgi cisterna membrane; GO:0033320,UDP-D-xylose biosynthetic process; GO:0042732,D-xylose metabolic process; GO:0048040,UDP-glucuronate decarboxylase activity; GO:0070403,NAD+ binding;	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]; K08678;	NP_001118893.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	688	614	504	342
AT2G41490	down	-1.6746264329881022	0.03790983554725829	0.2200584614502596	AT2G41490	--	GO:0003975,UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0006488,dolichol-linked oligosaccharide biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016780,phosphotransferase activity, for other substituted phosphate groups; GO:0043231,intracellular membrane-bounded organelle;	ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15]; K01001;	NP_565950.1 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase [Arabidopsis thaliana]	38	31	8	16
AT1G70490	no change	-1.2469259274788411	0.03801083283580592	0.2200584614502596	AT1G70490	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0015031,protein transport; GO:0016004,phospholipase activator activity; GO:0016192,vesicle-mediated transport; GO:0050790,regulation of catalytic activity;	ARF1_2; ADP-ribosylation factor 1/2; K07937;	NP_001323060.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]	929	768	409	332
AT4G33970	no change	1.302441344737538	0.03804113324924813	0.2200584614502596	AT4G33970	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_195123.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	135	67	129	105
AT1G10395	no change	1.2348468637990209	0.03808234080438991	0.2200584614502596	AT1G10395	--	--	--	NP_001320683.1 hypothetical protein AT1G10395 [Arabidopsis thaliana]	25	20	44	45
AT5G44130	up	1.6211585185351751	0.03814937178867385	0.2200584614502596	AT5G44130	--	GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane;	--	NP_199226.1 FASCICLIN-like arabinogalactan protein 13 precursor [Arabidopsis thaliana]	55	47	34	20
AT4G36380	no change	-1.3528527480280337	0.03821840469980932	0.2200584614502596	AT4G36380	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0009965,leaf morphogenesis; GO:0010268,brassinosteroid homeostasis; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042814,monopolar cell growth; GO:0046872,metal ion binding; GO:0048366,leaf development; GO:0048441,petal development; GO:0048443,stamen development; GO:0102097,(22S)-22-hydroxy-5alpha-campestan-3-one C-23 hydroxylase activity; GO:0102136,3-epi-6-deoxocathasterone C-23 hydroxylase activity;	CYP90C1, ROT3; 3-epi-6-deoxocathasterone 23-monooxygenase [EC:1.14.14.147]; K12637;	NP_568002.1 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	72	90	99	27
AT5G64240	no change	1.0574256176835508	0.0386498014936608	0.2220400559850265	AT5G64240	--	GO:0004197,cysteine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_851262.1 metacaspase 3 [Arabidopsis thaliana]	170	124	65	51
AT1G27300	no change	-1.06197348919725	0.03887979522203126	0.22285828567583235	AT1G27300	--	GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane;	--	NP_564275.1 transmembrane protein [Arabidopsis thaliana]	96	88	38	52
AT3G05330	up	1.6418267888996017	0.03927332219425496	0.22460810108849183	AT3G05330	--	GO:0000911,cytokinesis by cell plate formation; GO:0000914,phragmoplast assembly; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005875,microtubule associated complex; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:2000694,regulation of phragmoplast microtubule organization;	--	NP_187184.2 cyclin family [Arabidopsis thaliana]	20	25	23	18
AT4G24230	no change	-0.9687619245360928	0.03955436609057782	0.22570821009085323	AT4G24230	--	GO:0000062,fatty-acyl-CoA binding; GO:0001666,response to hypoxia; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006631,fatty acid metabolic process; GO:0006952,defense response; GO:0008289,lipid binding; GO:0009617,response to bacterium; GO:0009646,response to absence of light; GO:0015908,fatty acid transport; GO:0042742,defense response to bacterium; GO:0050832,defense response to fungus; GO:0071456,cellular response to hypoxia;	--	NP_849432.1 acyl-CoA-binding domain 3 [Arabidopsis thaliana]	160	171	107	56
AT5G14430	no change	-1.0446186947540983	0.03969800916803561	0.22571683965361375	AT5G14430	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009505,plant-type cell wall; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_196947.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	279	242	134	133
AT1G17600	up	2.6605524707646246	0.03980122208287733	0.22571683965361375	AT1G17600	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043531,ADP binding; GO:0045088,regulation of innate immune response;	--	NP_173203.2 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	16	1	10	14
AT2G02500	down	-1.5085953188391823	0.03982194931413461	0.22571683965361375	AT2G02500	--	GO:0003824,catalytic activity; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0050518,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; GO:0070567,cytidylyltransferase activity;	ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]; K00991;	NP_001325418.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	66	49	14	11
AT1G61520	no change	1.2445299242332677	0.03996800414603519	0.22604126789257684	AT1G61520	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA3; light-harvesting complex I chlorophyll a/b binding protein 3; K08909;	NP_001185280.1 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]	6180	5366	4219	3223
AT1G16800	no change	-1.0657483353317705	0.04034564276602721	0.2276710883360072	AT1G16800	--	GO:0003723,RNA binding; GO:0004386,helicase activity; GO:0008266,poly(U) RNA binding; GO:0016787,hydrolase activity;	--	NP_001322185.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	75	63	52	23
AT2G42270	down	-1.8968647152039184	0.0408767123493635	0.2300444160170728	AT2G42270	--	GO:0000166,nucleotide binding; GO:0000388,spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]; K12854;	NP_181756.1 U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]	26	29	8	6
AT3G59950	no change	-1.2587637390222817	0.04102071368596165	0.2300444160170728	AT3G59950	--	GO:0004175,endopeptidase activity; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008150,biological_process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity;	ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342;	NP_850722.3 Peptidase family C54 protein [Arabidopsis thaliana]	57	81	44	24
AT5G63790	no change	0.989405802222124	0.04103739287691593	0.2300444160170728	AT5G63790	NAC	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0019760,glucosinolate metabolic process; GO:0071456,cellular response to hypoxia;	--	NP_201184.2 NAC domain containing protein 102 [Arabidopsis thaliana]	52	50	55	51
AT4G21310	down	-1.840867306950452	0.04147931019389588	0.23125439344305423	AT4G21310	--	GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008150,biological_process; GO:0009855,determination of bilateral symmetry; GO:0016020,membrane; GO:0048366,leaf development;	--	NP_193862.1 transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]	39	25	5	11
AT1G01130	down	-2.3872360060771882	0.0415125801200001	0.23125439344305423	AT1G01130	--	--	--	NP_171621.2 CBL-interacting Serine/Threonine-kinase [Arabidopsis thaliana]	24	20	8	1
AT2G15970	no change	-0.7362084652729708	0.0415780758313146	0.23125439344305423	AT2G15970	--	GO:0000325,plant-type vacuole; GO:0005886,plasma membrane; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042631,cellular response to water deprivation;	--	NP_179196.1 cold regulated 413 plasma membrane 1 [Arabidopsis thaliana]	1304	1342	766	526
AT2G41430	no change	-0.8474137975328428	0.04178417504780617	0.23125439344305423	AT2G41430	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009617,response to bacterium; GO:0009644,response to high light intensity; GO:0010196,nonphotochemical quenching; GO:0042651,thylakoid membrane; GO:0071456,cellular response to hypoxia;	--	NP_001189727.1 dehydration-induced protein (ERD15) [Arabidopsis thaliana]	1442	1188	937	826
AT4G24190	no change	-1.2597982736599072	0.04179602040927408	0.23125439344305423	AT4G24190	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009306,protein secretion; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0009934,regulation of meristem structural organization; GO:0010075,regulation of meristem growth; GO:0016887,ATP hydrolysis activity; GO:0034976,response to endoplasmic reticulum stress; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone;	HSP90B, TRA1; heat shock protein 90kDa beta; K09487;	NP_194150.1 Chaperone protein htpG family protein [Arabidopsis thaliana]	3414	3579	2055	1593
AT1G09610	no change	-1.2082337736493385	0.0418274043418281	0.23125439344305423	AT1G09610	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0008168,methyltransferase activity; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0030775,glucuronoxylan 4-O-methyltransferase activity; GO:0032259,methylation; GO:0045491,xylan metabolic process; GO:0045492,xylan biosynthetic process; GO:0071554,cell wall organization or biogenesis;	GXM; glucuronoxylan 4-O-methyltransferase [EC:2.1.1.112]; K18801;	NP_172432.1 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]	56	46	29	25
AT3G56410	no change	1.3419846365155514	0.04188930270225855	0.23125439344305423	AT3G56410	--	GO:1900150,regulation of defense response to fungus;	--	NP_850709.1 hypothetical protein (DUF3133) [Arabidopsis thaliana]	29	21	35	26
AT4G24370	up	1.7803798989503328	0.04245468580092642	0.2338683449423328	AT4G24370	--	GO:0005515,protein binding;	--	NP_567700.1 hypothetical protein AT4G24370 [Arabidopsis thaliana]	58	41	37	19
AT3G53090	no change	1.1371723468106767	0.04267421678699385	0.2345699389263485	AT3G53090	--	GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity;	UBE3B; ubiquitin-protein ligase E3 B [EC:2.3.2.26]; K10588;	NP_001030850.1 ubiquitin-protein ligase 7 [Arabidopsis thaliana]	41	42	48	29
AT1G18890	no change	-0.9331820838275506	0.04287554868622447	0.2349238632911944	AT1G18890	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_564066.2 calcium-dependent protein kinase 1 [Arabidopsis thaliana]	86	83	57	32
AT1G15520	no change	-1.4010091149847046	0.04292322060133807	0.2349238632911944	AT1G15520	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010193,response to ozone; GO:0010496,intercellular transport; GO:0015562,efflux transmembrane transporter activity; GO:0015692,lead ion transport; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042631,cellular response to water deprivation; GO:0046865,terpenoid transport; GO:0048581,negative regulation of post-embryonic development; GO:0055085,transmembrane transport; GO:0080168,abscisic acid transport; GO:0090332,stomatal closure; GO:0098657,import into cell; GO:0098739,import across plasma membrane; GO:0140359,ABC-type transporter activity;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_173005.1 pleiotropic drug resistance 12 [Arabidopsis thaliana]	43	50	20	10
AT1G62850	no change	-1.452511530841397	0.04341612616949835	0.23711167618320453	AT1G62850	--	GO:0003747,translation release factor activity; GO:0005634,nucleus; GO:0006415,translational termination;	--	NP_001077760.1 Class I peptide chain release factor [Arabidopsis thaliana]	30	33	19	18
AT1G17230	no change	1.2927491081158884	0.043717337814402867	0.23824544911703496	AT1G17230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173166.2 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	38	35	31	20
AT3G56950	no change	-0.7120085743071005	0.04401850663580606	0.23937414399172316	AT3G56950	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0015267,channel activity; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_001190113.1 small and basic intrinsic protein 2;1 [Arabidopsis thaliana]	149	134	78	65
AT5G59010	no change	0.7120872973573693	0.04441301940480765	0.2410045509280074	AT5G59010	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_200709.2 kinase with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	234	186	132	72
AT1G67820	up	1.862702053239353	0.04462868774793812	0.2414098574549171	AT1G67820	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_176948.2 Protein phosphatase 2C family protein [Arabidopsis thaliana]	18	31	15	17
AT1G12330	no change	1.2887494918284244	0.04467742352112611	0.2414098574549171	AT1G12330	--	GO:0003674,molecular_function; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_172697.2 cyclin-dependent kinase-like protein [Arabidopsis thaliana]	111	114	75	65
AT1G15415	up	1.7906604789491976	0.04491987739697373	0.2422056948629198	AT1G15415	--	GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_172994.1 late embryogenesis abundant-like protein [Arabidopsis thaliana]	14	20	16	14
AT4G29880	up	2.2865037785853364	0.04522400106407109	0.2433299845836383	AT4G29880	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_194717.2 plant intracellular ras group-related LRR 7 [Arabidopsis thaliana]	11	9	10	9
AT5G62680	no change	0.9505978137400176	0.0456288856897973	0.24499053603488208	AT5G62680	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090448,glucosinolate:proton symporter activity; GO:0090449,phloem glucosinolate loading; GO:0098656,anion transmembrane transport; GO:1901349,glucosinolate transport;	--	NP_201074.1 Major facilitator superfamily protein [Arabidopsis thaliana]	759	612	342	273
AT3G08580	no change	-0.9666264844320294	0.04603771218587052	0.24598530799221735	AT3G08580	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005347,ATP transmembrane transporter activity; GO:0005471,ATP:ADP antiporter activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0005740,mitochondrial envelope; GO:0005743,mitochondrial inner membrane; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0015865,purine nucleotide transport; GO:0016020,membrane; GO:0055085,transmembrane transport; GO:0140021,mitochondrial ADP transmembrane transport; GO:1990544,mitochondrial ATP transmembrane transport;	SLC25A4S, ANT; solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31; K05863;	NP_187470.1 ADP/ATP carrier 1 [Arabidopsis thaliana]	5319	4845	3749	2883
AT4G20325	down	-2.619119319072297	0.04614203241331629	0.24598530799221735	AT4G20325	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006401,RNA catabolic process; GO:0032299,ribonuclease H2 complex;	RNASEH2B; ribonuclease H2 subunit B; K10744;	NP_001078412.2 ribonuclease H2 subunit B [Arabidopsis thaliana]	16	19	5	1
AT5G26700	down	-2.2162651360174515	0.04615612335907738	0.24598530799221735	AT5G26700	--	GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development;	--	NP_850875.1 RmlC-like cupins superfamily protein [Arabidopsis thaliana]	25	18	9	2
AT4G02210	no change	-1.0209555202352003	0.04620077690384279	0.24598530799221735	AT4G02210	--	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0008150,biological_process;	--	NP_001319843.1 Myb/SANT-like DNA-binding domain protein [Arabidopsis thaliana]	57	65	51	30
AT4G37430	no change	0.7387581221315305	0.04646783423116461	0.2468906850069185	AT4G37430	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042343,indole glucosinolate metabolic process; GO:0046872,metal ion binding;	--	NP_195459.1 cytochrome P450, family 91, subfamily A, polypeptide 2 [Arabidopsis thaliana]	94	88	100	77
AT1G71730	no change	1.415421316144155	0.04711686212004285	0.24981752936564383	AT1G71730	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009651,response to salt stress; GO:0043966,histone H3 acetylation; GO:0045815,epigenetic maintenance of chromatin in transcription-competent conformation;	--	NP_177318.1 hypothetical protein AT1G71730 [Arabidopsis thaliana]	30	45	50	32
AT2G42530	no change	-0.4826107178806325	0.04724358543195138	0.2499686588863124	AT2G42530	--	GO:0005534,galactose binding; GO:0005829,cytosol; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0010150,leaf senescence; GO:0019898,extrinsic component of membrane; GO:0050832,defense response to fungus;	--	NP_181781.1 cold regulated 15b [Arabidopsis thaliana]	734	654	353	294
AT2G46915	no change	1.1258889354049364	0.04742509348938821	0.2504084293163755	AT2G46915	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_850462.2 DUF3754 family protein, putative (DUF3754) [Arabidopsis thaliana]	41	50	48	26
AT4G14700	down	-2.1629443393806653	0.04754230695514142	0.250507600829886	AT4G14700	--	GO:0000166,nucleotide binding; GO:0000808,origin recognition complex; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003688,DNA replication origin binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005664,nuclear origin of replication recognition complex; GO:0006260,DNA replication; GO:0006270,DNA replication initiation; GO:0006355,regulation of DNA-templated transcription; GO:0010385,double-stranded methylated DNA binding; GO:0016887,ATP hydrolysis activity; GO:0033314,mitotic DNA replication checkpoint signaling; GO:0046872,metal ion binding;	ORC1; origin recognition complex subunit 1; K02603;	NP_567440.1 origin recognition complex 1 [Arabidopsis thaliana]	33	17	7	2
AT4G39960	up	1.5263372414119836	0.04777603695798415	0.2512190373100613	AT4G39960	--	GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009941,chloroplast envelope; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_001329618.1 Molecular chaperone Hsp40/DnaJ family protein [Arabidopsis thaliana]	201	234	126	161
AT4G24350	down	-2.310788929453576	0.04849457773282555	0.25447154707224956	AT4G24350	--	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0009116,nucleoside metabolic process; GO:0009611,response to wounding;	--	NP_194166.2 Phosphorylase superfamily protein [Arabidopsis thaliana]	26	18	1	14
AT4G29840	no change	-0.9934522828676124	0.0492736236984403	0.2580275150463592	AT4G29840	--	GO:0003824,catalytic activity; GO:0004795,threonine synthase activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006520,cellular amino acid metabolic process; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009088,threonine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0019344,cysteine biosynthetic process; GO:0030170,pyridoxal phosphate binding;	thrC; threonine synthase [EC:4.2.3.1]; K01733;	NP_194713.1 Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]	1065	967	660	512
AT5G18780	down	-1.7589507312983024	0.04955519858198511	0.2589691589140701	AT5G18780	--	GO:0005515,protein binding;	--	NP_001190332.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]	30	13	14	12
AT4G13370	no change	-1.0054204188099174	0.0497002338897197	0.25919486731421437	AT4G13370	--	GO:0005874,microtubule; GO:0008017,microtubule binding;	--	NP_193073.1 serine/arginine repetitive matrix protein, putative (DUF936) [Arabidopsis thaliana]	127	113	52	46
AT2G41680	no change	-1.201307589040983	0.04983719074944958	0.2593776082972376	AT2G41680	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0010581,regulation of starch biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0019430,removal of superoxide radicals; GO:0042744,hydrogen peroxide catabolic process; GO:0042802,identical protein binding; GO:0043085,positive regulation of catalytic activity; GO:0045454,cell redox homeostasis;	trxB, TRR; thioredoxin reductase (NADPH) [EC:1.8.1.9]; K00384;	CAD5321071.1 unnamed protein product [Arabidopsis thaliana]	178	155	118	75
AT5G67160	no change	0.8590764297509441	0.05011661624826372	0.2602483501098842	AT5G67160	--	GO:0006952,defense response; GO:0009617,response to bacterium; GO:0009697,salicylic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:1900150,regulation of defense response to fungus; GO:1900424,regulation of defense response to bacterium;	--	NP_201517.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	104	79	75	65
AT3G27180	no change	-1.044377762016861	0.05020901371471635	0.2602483501098842	AT3G27180	--	GO:0001510,RNA methylation; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_189354.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	58	71	70	81
AT1G20330	no change	-1.1504827624519471	0.05063811601880501	0.2613932743696539	AT1G20330	--	GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0007389,pattern specification process; GO:0008168,methyltransferase activity; GO:0008202,steroid metabolic process; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009825,multidimensional cell growth; GO:0010051,xylem and phloem pattern formation; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0030797,24-methylenesterol C-methyltransferase activity; GO:0032259,methylation; GO:0032876,negative regulation of DNA endoreduplication; GO:0071704,organic substance metabolic process;	E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143]; K08242;	NP_173458.1 sterol methyltransferase 2 [Arabidopsis thaliana]	2490	2170	1156	1038
AT5G20980	no change	-0.9353791354592378	0.05068771738639938	0.2613932743696539	AT5G20980	--	GO:0003871,5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity; GO:0008168,methyltransferase activity; GO:0008172,S-methyltransferase activity; GO:0008270,zinc ion binding; GO:0008652,cellular amino acid biosynthetic process; GO:0008705,methionine synthase activity; GO:0009086,methionine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0032259,methylation; GO:0046872,metal ion binding;	metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]; K00549;	NP_001078611.1 methionine synthase 3 [Arabidopsis thaliana]	120	108	77	46
AT2G23450	no change	-1.1475413254430853	0.05075344732357173	0.2613932743696539	AT2G23450	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_565552.1 Protein kinase superfamily protein [Arabidopsis thaliana]	108	119	69	50
AT1G03870	no change	-1.4066734346646983	0.05084073509350833	0.2613932743696539	AT1G03870	--	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0099503,secretory vesicle;	--	NP_563692.1 FASCICLIN-like arabinoogalactan 9 [Arabidopsis thaliana]	65	52	15	11
AT3G19790	no change	1.0446735029645131	0.05115627046260459	0.2624852990470336	AT3G19790	--	GO:0008150,biological_process;	--	NP_001078190.1 hypothetical protein AT3G19790 [Arabidopsis thaliana]	48	49	50	43
AT5G14740	no change	-1.287048544448929	0.05169678003045828	0.2645971421489244	AT5G14740	--	GO:0004089,carbonate dehydratase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015976,carbon utilization; GO:0016829,lyase activity; GO:0048046,apoplast;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_001031883.1 carbonic anhydrase 2 [Arabidopsis thaliana]	117	120	62	82
AT1G70480	no change	-1.076894187539768	0.05179790119116993	0.2645971421489244	AT1G70480	--	GO:0005261,cation channel activity; GO:0009507,chloroplast; GO:0009695,jasmonic acid biosynthetic process; GO:0009707,chloroplast outer membrane; GO:0034220,ion transmembrane transport; GO:0098655,cation transmembrane transport;	--	NP_564989.1 OBP32pep, putative (DUF220) [Arabidopsis thaliana]	76	61	40	29
AT3G47590	no change	1.7262706628716913	0.05187975400090895	0.2645971421489244	AT3G47590	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0008150,biological_process;	K06889; uncharacterized protein; K06889;	NP_190343.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	82	111	57	59
AT5G20020	no change	1.1528501361365535	0.05222412977584292	0.26582082055904044	AT5G20020	--	GO:0000054,ribosomal subunit export from nucleus; GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0009536,plastid; GO:0015031,protein transport;	RAN; GTP-binding nuclear protein Ran; K07936;	NP_197502.1 RAS-related GTP-binding nuclear protein 2 [Arabidopsis thaliana]	333	305	431	339
AT3G48860	no change	-0.8923608372018457	0.05258294615760484	0.26658973364774846	AT3G48860	--	GO:0000911,cytokinesis by cell plate formation; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0009825,multidimensional cell growth; GO:0016020,membrane; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0051301,cell division;	--	NP_001325715.1 coiled-coil protein [Arabidopsis thaliana]	102	80	42	63
AT1G25550	no change	-2.1264812041176775	0.05258469402403525	0.26658973364774846	AT1G25550	G2-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016036,cellular response to phosphate starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0071456,cellular response to hypoxia; GO:0080090,regulation of primary metabolic process;	--	NP_001323092.1 myb-like transcription factor family protein [Arabidopsis thaliana]	22	23	8	2
AT1G76860	no change	1.152251650050495	0.05316987968580794	0.268791215961117	AT1G76860	--	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000398,mRNA splicing, via spliceosome; GO:0000932,P-body; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005688,U6 snRNP; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0033962,P-body assembly; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:0120114,Sm-like protein family complex; GO:0120115,Lsm2-8 complex; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex;	LSM3; U6 snRNA-associated Sm-like protein LSm3; K12622;	NP_177812.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	46	75	43	74
AT1G36380	no change	-1.9248759504568156	0.05323016614711315	0.268791215961117	AT1G36380	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_564474.1 transmembrane protein [Arabidopsis thaliana]	29	14	9	7
AT5G03330	no change	-1.4862232272973284	0.05392020962347389	0.2717365019638437	AT5G03330	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001331866.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	38	44	19	6
AT4G10270	no change	1.1663359327912015	0.05413894472793362	0.2722996330683618	AT4G10270	--	--	--	NP_192765.1 Wound-responsive family protein [Arabidopsis thaliana]	41	27	34	34
AT3G22680	no change	0.9380388077676658	0.05441509314583824	0.2731487417281229	AT3G22680	--	GO:0000419,RNA polymerase V complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006306,DNA methylation; GO:0043621,protein self-association; GO:0044030,regulation of DNA methylation; GO:0070918,small regulatory ncRNA processing;	--	NP_188907.2 RNA-DIRECTED DNA METHYLATION 1 [Arabidopsis thaliana]	66	28	73	94
AT1G80310	no change	1.0348758348614506	0.05461463129904798	0.27328128430666004	AT1G80310	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0015098,molybdate ion transmembrane transporter activity; GO:0015689,molybdate ion transport; GO:0016020,membrane; GO:0090414,molybdate ion export from vacuole;	--	NP_178147.1 sulfate transmembrane transporter [Arabidopsis thaliana]	91	74	79	34
AT5G54270	no change	-0.5949162434316815	0.05472994669772717	0.27328128430666004	AT5G54270	--	GO:0005515,protein binding; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009635,response to herbicide; GO:0009644,response to high light intensity; GO:0009737,response to abscisic acid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0010119,regulation of stomatal movement; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0042651,thylakoid membrane; GO:0046872,metal ion binding;	LHCB3; light-harvesting complex II chlorophyll a/b binding protein 3; K08914;	NP_200238.1 light-harvesting chlorophyll B-binding protein 3 [Arabidopsis thaliana]	12455	10989	4535	3532
AT3G63530	no change	1.1073398252144298	0.05476363654082382	0.27328128430666004	AT3G63530	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0008285,negative regulation of cell population proliferation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0046621,negative regulation of organ growth; GO:0046872,metal ion binding; GO:0048437,floral organ development; GO:0051865,protein autoubiquitination; GO:1900057,positive regulation of leaf senescence;	--	NP_001030922.1 RING/U-box superfamily protein [Arabidopsis thaliana]	65	63	74	61
AT1G01040	no change	-1.0108000375035395	0.05514533913849794	0.27464753054300833	AT1G01040	--	GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003725,double-stranded RNA binding; GO:0004386,helicase activity; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004525,ribonuclease III activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0009616,RNAi-mediated antiviral immune response; GO:0009880,embryonic pattern specification; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010267,ta-siRNA processing; GO:0010445,nuclear dicing body; GO:0010599,lsiRNA processing; GO:0016787,hydrolase activity; GO:0016891,endoribonuclease activity, producing 5'-phosphomonoesters; GO:0030422,siRNA processing; GO:0031047,gene silencing by RNA; GO:0031053,primary miRNA processing; GO:0035279,miRNA-mediated gene silencing by mRNA destabilization; GO:0046872,metal ion binding; GO:0048317,seed morphogenesis; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; GO:2000034,regulation of seed maturation;	DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-]; K11592;	NP_171612.1 dicer-like 1 [Arabidopsis thaliana]	152	139	84	53
AT4G26230	no change	-0.9594306461527812	0.05535669073567344	0.27499067010710504	AT4G26230	--	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L31e, RPL31; large subunit ribosomal protein L31e; K02910;	NP_194353.1 Ribosomal protein L31e family protein [Arabidopsis thaliana]	268	227	295	201
AT5G05200	no change	-1.0630714174970644	0.05545483230954692	0.27499067010710504	AT5G05200	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005743,mitochondrial inner membrane; GO:0005886,plasma membrane; GO:0007005,mitochondrion organization; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031966,mitochondrial membrane; GO:0055088,lipid homeostasis;	--	NP_568150.1 Protein kinase superfamily protein [Arabidopsis thaliana]	228	272	130	126
AT2G11910	no change	-0.8073106105537571	0.05563243532891654	0.27499067010710504	AT2G11910	--	GO:0009941,chloroplast envelope;	--	NP_565354.1 hypothetical protein AT2G11910 [Arabidopsis thaliana]	645	508	421	379
AT4G25660	no change	0.7043616119042104	0.05564644208454188	0.27499067010710504	AT4G25660	--	GO:0008233,peptidase activity; GO:0016579,protein deubiquitination; GO:0070646,protein modification by small protein removal; GO:0101005,deubiquitinase activity;	--	NP_194296.1 PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]	80	86	117	86
AT3G18680	no change	-1.175367038173457	0.05591721137392783	0.27562874875300764	AT3G18680	--	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0006225,UDP biosynthetic process; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031425,chloroplast RNA processing; GO:0033862,UMP kinase activity; GO:0042548,regulation of photosynthesis, light reaction; GO:0043621,protein self-association; GO:0044210,'de novo' CTP biosynthetic process; GO:0046940,nucleoside monophosphate phosphorylation; GO:1990825,sequence-specific mRNA binding;	pyrH; uridylate kinase [EC:2.7.4.22]; K09903;	NP_188498.1 Amino acid kinase family protein [Arabidopsis thaliana]	678	590	341	324
AT2G21280	no change	-1.1771867109182033	0.05607712239938442	0.27562874875300764	AT2G21280	--	GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0042803,protein homodimerization activity;	K07071; uncharacterized protein; K07071;	NP_001324767.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	143	123	74	50
AT5G08780	no change	1.011844680058334	0.05613275296807674	0.27562874875300764	AT5G08780	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0030261,chromosome condensation; GO:0031492,nucleosomal DNA binding; GO:0045910,negative regulation of DNA recombination;	--	NP_680160.2 winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]	53	33	48	45
AT3G57350	no change	-0.8708620686516504	0.05620877037438545	0.27562874875300764	AT3G57350	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0006606,protein import into nucleus; GO:0015031,protein transport; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0017056,structural constituent of nuclear pore; GO:0051028,mRNA transport;	NUP93, NIC96; nuclear pore complex protein Nup93; K14309;	NP_191294.5 Nucleoporin interacting component (Nup93/Nic96-like) family protein [Arabidopsis thaliana]	103	103	56	57
AT4G15780	no change	1.6520202748971755	0.0564776398796074	0.2763362049901623	AT4G15780	--	GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport;	--	NP_193313.6 vesicle-associated membrane protein 724 [Arabidopsis thaliana]	30	29	18	21
AT1G13170	no change	-1.075306466036257	0.05657020149307448	0.2763362049901623	AT1G13170	--	GO:0005829,cytosol; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0015248,sterol transporter activity; GO:0015918,sterol transport; GO:0016020,membrane; GO:0032934,sterol binding; GO:0043231,intracellular membrane-bounded organelle;	--	NP_001184980.1 OSBP(oxysterol binding protein)-related protein 1D [Arabidopsis thaliana]	88	68	52	26
AT4G12840	no change	1.210687854220211	0.05677885333029676	0.2766656352058188	AT4G12840	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001154227.2 GTPase Der (DUF707) [Arabidopsis thaliana]	57	30	31	20
AT1G34110	no change	1.361809554901459	0.05685505980850422	0.2766656352058188	AT1G34110	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0010074,maintenance of meristem identity; GO:0010082,regulation of root meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_001320719.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	16	22	28	30
AT2G28910	no change	0.7823079492856433	0.05779068870631584	0.2801294239459436	AT2G28910	--	GO:0003676,nucleic acid binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_001323648.1 CAX interacting protein 4 [Arabidopsis thaliana]	832	585	579	542
AT1G80320	no change	-2.3186409150294196	0.05791903048786343	0.2801294239459436	AT1G80320	--	GO:0051213,dioxygenase activity;	--	NP_178148.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	35	14	1	5
AT1G79620	no change	-0.9444408146689414	0.05800588947272142	0.2801294239459436	AT1G79620	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0051512,positive regulation of unidimensional cell growth; GO:1901347,negative regulation of secondary cell wall biogenesis;	--	NP_001321900.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	108	117	61	32
AT3G46610	no change	-1.2539313972443278	0.05802586693539889	0.2801294239459436	AT3G46610	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006413,translational initiation; GO:0008494,translation activator activity; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0032544,plastid translation; GO:0043022,ribosome binding; GO:0045727,positive regulation of translation;	--	NP_001319696.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	40	21	35	23
AT1G08840	no change	-1.2531773272772195	0.05811722429998357	0.2801294239459436	AT1G08840	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003824,catalytic activity; GO:0004386,helicase activity; GO:0004518,nuclease activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0006259,DNA metabolic process; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0008152,metabolic process; GO:0010073,meristem maintenance; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017108,5'-flap endonuclease activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0033567,DNA replication, Okazaki fragment processing; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0071932,replication fork reversal; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	DNA2; DNA replication ATP-dependent helicase Dna2 [EC:3.6.4.12]; K10742;	NP_001184943.1 DNA replication helicase [Arabidopsis thaliana]	34	37	21	30
AT3G19020	no change	-0.6990081293479777	0.05845097565969229	0.2809307567721768	AT3G19020	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_188532.2 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	153	124	65	64
AT4G13160	no change	-2.0160687885597515	0.05850535566597805	0.2809307567721768	AT4G13160	--	GO:0004674,protein serine/threonine kinase activity; GO:0005575,cellular_component; GO:0016020,membrane; GO:0046777,protein autophosphorylation; GO:0080115,myosin XI tail binding;	--	NP_193052.1 zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]	21	9	25	4
AT5G14570	no change	0.8240802234531373	0.05863414585148885	0.2809307567721768	AT5G14570	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0015112,nitrate transmembrane transporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0055085,transmembrane transport; GO:0071249,cellular response to nitrate;	NRT, narK, nrtP, nasA; MFS transporter, NNP family, nitrate/nitrite transporter; K02575;	NP_196961.1 high affinity nitrate transporter 2.7 [Arabidopsis thaliana]	87	78	58	46
AT1G53440	no change	0.5936496555876349	0.05872501477516623	0.2809307567721768	AT1G53440	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_175749.1 Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	343	279	197	186
AT5G54770	no change	1.472691595045383	0.05906000742629472	0.2818618830722184	AT5G54770	--	GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006974,cellular response to DNA damage stimulus; GO:0008270,zinc ion binding; GO:0009228,thiamine biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016763,pentosyltransferase activity; GO:0018131,oxazole or thiazole biosynthetic process; GO:0019438,aromatic compound biosynthetic process; GO:0019904,protein domain specific binding; GO:0042803,protein homodimerization activity; GO:0044272,sulfur compound biosynthetic process; GO:0046872,metal ion binding; GO:0052837,thiazole biosynthetic process; GO:1901362,organic cyclic compound biosynthetic process; GO:1901566,organonitrogen compound biosynthetic process;	THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]; K03146;	NP_200288.1 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) [Arabidopsis thaliana]	12932	12365	5800	4248
AT5G13510	no change	-0.8629678213175023	0.05914115739118452	0.2818618830722184	AT5G13510	--	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L10, MRPL10, rplJ; large subunit ribosomal protein L10; K02864;	NP_196855.1 Ribosomal protein L10 family protein [Arabidopsis thaliana]	533	421	216	173
AT5G05560	no change	0.7369893783666539	0.05939738121457209	0.2825538975534317	AT5G05560	--	GO:0005680,anaphase-promoting complex; GO:0016020,membrane;	APC1; anaphase-promoting complex subunit 1; K03348;	NP_001331419.1 E3 ubiquitin ligase [Arabidopsis thaliana]	70	82	104	77
AT5G13770	no change	-1.179445798247679	0.05950863851509191	0.28255500936736744	AT5G13770	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization;	--	NP_196881.2 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	50	29	34	22
AT4G31530	no change	-1.102272088347732	0.05969856549141297	0.2829289556343501	AT4G31530	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0035451,extrinsic component of stromal side of plastid thylakoid membrane;	--	NP_194881.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	47	93	34	21
AT4G24520	no change	0.7605636686857418	0.06002906092493144	0.2838379095905239	AT4G24520	--	GO:0003958,NADPH-hemoprotein reductase activity; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009698,phenylpropanoid metabolic process; GO:0010181,FMN binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0050661,NADP binding;	POR; NADPH-ferrihemoprotein reductase [EC:1.6.2.4]; K00327;	NP_001190823.1 P450 reductase 1 [Arabidopsis thaliana]	412	420	379	206
AT3G47580	no change	-3.153313160502286	0.06011341189363158	0.2838379095905239	AT3G47580	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_190342.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	16	6	3	1
AT2G29180	no change	-1.4913596030858765	0.06069139233686117	0.28603628425428085	AT2G29180	--	GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_180481.1 transmembrane protein [Arabidopsis thaliana]	18	47	22	13
AT2G36970	no change	-1.4932655783517017	0.06085437142869123	0.28627426115715193	AT2G36970	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_181234.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	39	36	11	13
AT4G33110	no change	-0.7751044684925872	0.06124101564226504	0.2870606059558149	AT4G33110	--	GO:0000325,plant-type vacuole; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_001190896.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	110	140	98	90
AT2G34560	no change	-1.0863361789272865	0.06124711553399115	0.2870606059558149	AT2G34560	--	GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_565791.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	602	467	257	289
AT3G19240	no change	-0.9822378352826142	0.06181387224020444	0.28918438391786827	AT3G19240	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm;	--	NP_188555.1 Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]	140	118	111	81
AT1G55920	no change	1.064827936676405	0.0626647027807423	0.29218950310424346	AT1G55920	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006535,cysteine biosynthetic process from serine; GO:0008652,cellular amino acid biosynthetic process; GO:0009001,serine O-acetyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009970,cellular response to sulfate starvation; GO:0016412,serine O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019344,cysteine biosynthetic process;	cysE; serine O-acetyltransferase [EC:2.3.1.30]; K00640;	NP_175988.1 serine acetyltransferase 2;1 [Arabidopsis thaliana]	113	101	57	64
AT4G14500	no change	0.6466199333560994	0.0627154528741807	0.29218950310424346	AT4G14500	--	GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_001154233.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	166	174	103	101
AT5G47060	no change	-0.7238478307597873	0.06284144378454755	0.29218950310424346	AT5G47060	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0019900,kinase binding; GO:0019902,phosphatase binding; GO:0042594,response to starvation; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia; GO:1905582,response to mannose;	--	NP_001330022.1 hypothetical protein (DUF581) [Arabidopsis thaliana]	108	87	80	60
AT2G46160	no change	1.719080886274364	0.06291546078629683	0.29218950310424346	AT2G46160	--	GO:0003674,molecular_function; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_001324277.1 RING/U-box superfamily protein [Arabidopsis thaliana]	12	14	16	15
AT5G03905	no change	1.3128403837737208	0.0634046252244753	0.2937915593268181	AT5G03905	--	GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0016226,iron-sulfur cluster assembly; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0106035,protein maturation by [4Fe-4S] cluster transfer;	--	NP_568130.1 Iron-sulfur cluster biosynthesis family protein [Arabidopsis thaliana]	21	32	42	17
AT1G56300	no change	-0.5964950826668884	0.063491299658055	0.2937915593268181	AT1G56300	--	GO:0010583,response to cyclopentenone;	--	NP_564717.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	198	151	112	75
AT4G18230	no change	0.6812471393176387	0.06366774604908733	0.29397696391999767	AT4G18230	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0006488,dolichol-linked oligosaccharide biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0031965,nuclear membrane; GO:0043541,UDP-N-acetylglucosamine transferase complex;	ALG14; beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]; K07441;	NP_001328332.1 UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Arabidopsis thaliana]	150	161	206	193
AT3G15890	no change	1.5207187392187471	0.06392267138418906	0.29397696391999767	AT3G15890	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004715,non-membrane spanning protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_566530.1 Protein kinase superfamily protein [Arabidopsis thaliana]	49	24	38	34
AT3G26570	no change	-1.1088631162349092	0.06394974841962665	0.29397696391999767	AT3G26570	--	GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0005829,cytosol; GO:0006817,phosphate ion transport; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009673,low-affinity phosphate transmembrane transporter activity; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0015293,symporter activity; GO:0016020,membrane; GO:0035435,phosphate ion transmembrane transport; GO:0055085,transmembrane transport;	--	NP_189289.2 phosphate transporter 2;1 [Arabidopsis thaliana]	622	397	359	318
AT4G39780	no change	-2.104411085085996	0.06399341375704469	0.29397696391999767	AT4G39780	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding;	--	NP_195688.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	14	22	9	3
AT3G10070	no change	1.4558733387741096	0.06435914874087183	0.29512438476670055	AT3G10070	--	GO:0000124,SAGA complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006352,DNA-templated transcription initiation; GO:0017025,TBP-class protein binding; GO:0046695,SLIK (SAGA-like) complex; GO:0046982,protein heterodimerization activity; GO:0051123,RNA polymerase II preinitiation complex assembly;	TAF12; transcription initiation factor TFIID subunit 12; K03126;	NP_566367.1 TBP-associated factor 12 [Arabidopsis thaliana]	22	27	15	21
AT4G13510	no change	1.1469148895339654	0.06457490930739346	0.2955811945815042	AT4G13510	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006812,cation transport; GO:0008519,ammonium transmembrane transporter activity; GO:0009506,plasmodesma; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0043621,protein self-association; GO:0051258,protein polymerization; GO:0071705,nitrogen compound transport; GO:0072488,ammonium transmembrane transport; GO:0080181,lateral root branching; GO:0097272,ammonium homeostasis; GO:0110067,ammonium transmembrane transporter complex;	--	NP_193087.1 ammonium transporter 1;1 [Arabidopsis thaliana]	507	401	324	243
AT5G60360	no change	0.8952877980245812	0.06520140573491227	0.29791306570081105	AT5G60360	--	GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0007568,aging; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0099503,secretory vesicle;	CTSH; cathepsin H [EC:3.4.22.16]; K01366;	NP_568921.1 aleurain-like protease [Arabidopsis thaliana]	3719	3168	2324	1790
AT3G12760	no change	-0.679670528124964	0.06574009693110644	0.29934525526015654	AT3G12760	--	GO:0000151,ubiquitin ligase complex; GO:0005515,protein binding; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032182,ubiquitin-like protein binding; GO:0045116,protein neddylation; GO:0051443,positive regulation of ubiquitin-protein transferase activity; GO:0097602,cullin family protein binding;	--	NP_566436.1 defective in cullin neddylation protein [Arabidopsis thaliana]	137	101	79	73
AT3G07700	no change	-1.1491845830324916	0.06575009732433301	0.29934525526015654	AT3G07700	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006629,lipid metabolic process; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010287,plastoglobule; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0034599,cellular response to oxidative stress; GO:0046467,membrane lipid biosynthetic process; GO:0055072,iron ion homeostasis; GO:0080177,plastoglobule organization; GO:0106310,protein serine kinase activity; GO:1901031,regulation of response to reactive oxygen species; GO:1990641,response to iron ion starvation;	--	NP_001319495.1 Protein kinase superfamily protein [Arabidopsis thaliana]	488	476	272	209
AT2G42490	no change	1.133769341210925	0.0663611535641831	0.3015877425372249	AT2G42490	--	GO:0002237,response to molecule of bacterial origin; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009447,putrescine catabolic process; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010311,lateral root formation; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_181777.2 Copper amine oxidase family protein [Arabidopsis thaliana]	307	297	370	270
AT2G44760	no change	-1.0828003636442824	0.0667499686193578	0.3023468371376252	AT2G44760	--	GO:0003674,molecular_function;	--	NP_182004.2 dihydroorotate dehydrogenase (DUF3598) [Arabidopsis thaliana]	65	98	27	37
AT2G01860	no change	1.759355643484101	0.06693377418379111	0.3023468371376252	AT2G01860	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_178295.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	12	10	23	10
AT1G26760	no change	-1.322301062553349	0.0669911813618095	0.3023468371376252	AT1G26760	--	GO:0005515,protein binding;	--	NP_173998.2 SET domain protein 35 [Arabidopsis thaliana]	25	48	22	19
AT5G64430	no change	1.3523173143235745	0.06700338551890792	0.3023468371376252	AT5G64430	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0009536,plastid; GO:0009941,chloroplast envelope;	--	NP_201248.1 Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]	354	206	240	226
AT2G40630	no change	1.3320565253803345	0.06775720487023806	0.30520723255709004	AT2G40630	--	GO:0009507,chloroplast; GO:0070176,DRM complex;	--	NP_001325082.1 Uncharacterized conserved protein (UCP030365) [Arabidopsis thaliana]	16	27	30	23
AT2G22670	no change	1.554905707572189	0.06817364961832395	0.3065405269940538	AT2G22670	--	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010311,lateral root formation; GO:0045892,negative regulation of DNA-templated transcription; GO:1901332,negative regulation of lateral root development;	IAA; auxin-responsive protein IAA; K14484;	NP_001077943.1 indoleacetic acid-induced protein 8 [Arabidopsis thaliana]	1198	1175	914	653
AT1G26090	no change	-1.235171935772752	0.06838660167171634	0.30695573413495253	AT1G26090	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule;	--	NP_173934.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	47	35	17	18
AT5G54630	no change	1.2641317222621602	0.06885278732360864	0.30850412630032387	AT5G54630	--	GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_200274.1 zinc finger protein-like protein [Arabidopsis thaliana]	56	44	39	22
AT4G36945	no change	-0.8709727958964928	0.06919929207550532	0.30951177211276104	AT4G36945	--	GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity;	--	NP_001078503.4 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]	121	102	30	53
AT2G20700	no change	-1.2693293207126404	0.069660360270051	0.31086395843365305	AT2G20700	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0090406,pollen tube; GO:1903427,negative regulation of reactive oxygen species biosynthetic process;	--	NP_179662.2 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 [Arabidopsis thaliana]	37	36	21	14
AT1G13140	no change	-1.0060093137975734	0.06974590187254064	0.31086395843365305	AT1G13140	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_172773.4 cytochrome P450, family 86, subfamily C, polypeptide 3 [Arabidopsis thaliana]	251	235	77	79
AT3G60810	no change	-0.9898510587757592	0.07004492589298941	0.31165093775814345	AT3G60810	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0008150,biological_process;	--	NP_191640.1 DUF1499 family protein [Arabidopsis thaliana]	70	53	46	21
AT2G18960	no change	1.3629586283171378	0.07026767563532488	0.31209639527382516	AT2G18960	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0000325,plant-type vacuole; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008553,P-type proton-exporting transporter activity; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009737,response to abscisic acid; GO:0010119,regulation of stomatal movement; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0051453,regulation of intracellular pH; GO:0120029,proton export across plasma membrane; GO:1902600,proton transmembrane transport; GO:1990069,stomatal opening;	PMA1, PMA2; H+-transporting ATPase [EC:7.1.2.1]; K01535;	NP_179486.1 H[+]-ATPase 1 [Arabidopsis thaliana]	2053	1936	1608	1203
AT1G43910	no change	-0.9567316899291473	0.07043797383574651	0.31230774113584475	AT1G43910	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006950,response to stress; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0051365,cellular response to potassium ion starvation;	--	NP_175058.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	276	309	246	125
AT1G09430	no change	0.7561901115075846	0.07125738780422386	0.3153817383270892	AT1G09430	--	GO:0000166,nucleotide binding; GO:0003878,ATP citrate synthase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006085,acetyl-CoA biosynthetic process; GO:0006629,lipid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity;	ACLY; ATP citrate (pro-S)-lyase [EC:2.3.3.8]; K01648;	NP_172414.1 ATP-citrate lyase A-3 [Arabidopsis thaliana]	195	206	129	93
AT2G37340	no change	1.2490645334021249	0.07148448524720255	0.3153817383270892	AT2G37340	--	GO:0000245,spliceosomal complex assembly; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0046872,metal ion binding;	SFRS7; splicing factor, arginine/serine-rich 7; K12896;	NP_850280.1 arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]	155	130	176	133
AT4G21960	no change	0.6140310390739714	0.07158308834608612	0.3153817383270892	AT4G21960	--	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0006979,response to oxidative stress; GO:0009505,plant-type cell wall; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0048511,rhythmic process; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity;	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430;	NP_567641.1 Peroxidase superfamily protein [Arabidopsis thaliana]	2144	1885	1484	1071
AT4G39030	no change	-1.1253020380471632	0.07168052815935942	0.3153817383270892	AT4G39030	--	GO:0002376,immune system process; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009624,response to nematode; GO:0009697,salicylic acid biosynthetic process; GO:0009751,response to salicylic acid; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031348,negative regulation of defense response; GO:0031969,chloroplast membrane; GO:0042742,defense response to bacterium; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0045087,innate immune response; GO:0055085,transmembrane transport;	--	NP_195614.2 MATE efflux family protein [Arabidopsis thaliana]	54	58	22	13
AT5G42310	no change	0.9829649670740288	0.07193985756206042	0.3153817383270892	AT5G42310	--	GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0010239,chloroplast mRNA processing; GO:0042644,chloroplast nucleoid; GO:0042651,thylakoid membrane;	--	NP_199046.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	78	59	72	55
AT3G45980	no change	-0.7508454179974411	0.07199146111693662	0.3153817383270892	AT3G45980	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006334,nucleosome assembly; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2B; histone H2B; K11252;	XP_010503210.1 PREDICTED: histone H2B.6 isoform X1 [Camelina sativa]	617	459	261	188
AT5G16710	no change	1.563451190726454	0.07213482292872532	0.3153817383270892	AT5G16710	--	GO:0004364,glutathione transferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009941,chloroplast envelope; GO:0010731,protein glutathionylation; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019852,L-ascorbic acid metabolic process; GO:0033355,ascorbate glutathione cycle; GO:0045174,glutathione dehydrogenase (ascorbate) activity; GO:0098869,cellular oxidant detoxification; GO:0140547,acquisition of seed longevity;	DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18]; K21888;	NP_568336.1 dehydroascorbate reductase 1 [Arabidopsis thaliana]	78	108	51	47
AT3G52220	no change	1.0057410071560824	0.07220166028765444	0.3153817383270892	AT3G52220	--	GO:0008150,biological_process;	--	NP_566962.1 leukocyte immunoglobulin-like receptor family A protein [Arabidopsis thaliana]	156	164	137	93
AT4G01070	no change	1.0030448570163024	0.07231154141656591	0.3153817383270892	AT4G01070	--	GO:0006805,xenobiotic metabolic process; GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0042178,xenobiotic catabolic process; GO:0050505,hydroquinone glucosyltransferase activity;	--	NP_192016.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	195	215	130	127
AT5G46570	no change	-1.1540256860916012	0.07237050498350496	0.3153817383270892	AT5G46570	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	BSK; BR-signaling kinase [EC:2.7.11.1]; K14500;	NP_199469.1 BR-signaling kinase 2 [Arabidopsis thaliana]	92	61	43	29
AT1G76850	no change	-0.6391295096215845	0.07278713465468961	0.3166551413610001	AT1G76850	--	GO:0000145,exocyst; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006887,exocytosis; GO:0006893,Golgi to plasma membrane transport; GO:0009506,plasmodesma; GO:0060321,acceptance of pollen; GO:0070062,extracellular exosome;	EXOC2, SEC5; exocyst complex component 2; K17637;	NP_177811.2 exocyst complex component sec5 [Arabidopsis thaliana]	346	362	247	190
AT1G54690	no change	0.7491155408923849	0.07291449049144859	0.31666788105927757	AT1G54690	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2A; histone H2A; K11251;	NP_175868.1 gamma histone variant H2AX [Arabidopsis thaliana]	294	222	207	167
AT5G20730	no change	-0.7213329283124108	0.07387909089647474	0.32031053889527805	AT5G20730	ARF	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009630,gravitropism; GO:0009638,phototropism; GO:0009723,response to ethylene; GO:0009725,response to hormone; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009785,blue light signaling pathway; GO:0010311,lateral root formation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048366,leaf development; GO:0048527,lateral root development; GO:1990110,callus formation;	K14486, ARF; auxin response factor; K14486;	NP_851047.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein [Arabidopsis thaliana]	172	130	102	105
AT1G29330	no change	-0.8814979480261038	0.07419378042166573	0.3211278421311893	AT1G29330	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005801,cis-Golgi network; GO:0006621,protein retention in ER lumen; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0046923,ER retention sequence binding;	KDELR; ER lumen protein retaining receptor; K10949;	NP_564326.1 ER lumen protein retaining receptor family protein [Arabidopsis thaliana]	69	53	58	51
AT3G19780	no change	-1.3280123324339757	0.0747378436870695	0.32271396890959464	AT3G19780	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001189936.1 hypothetical protein AT3G19780 [Arabidopsis thaliana]	46	38	20	15
AT2G37580	no change	0.8194448065604849	0.074813847409297	0.32271396890959464	AT2G37580	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_565865.1 RING/U-box superfamily protein [Arabidopsis thaliana]	109	63	62	71
AT5G06260	no change	-1.266090476431609	0.07539363676181611	0.3246646456156041	AT5G06260	--	GO:0005509,calcium ion binding;	--	NP_001330374.1 TLD-domain containing nucleolar protein [Arabidopsis thaliana]	59	46	44	27
AT5G27290	no change	1.524941598141024	0.07595250035129793	0.3262272230374145	AT5G27290	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_568492.1 stress regulated protein [Arabidopsis thaliana]	23	16	20	11
AT4G37330	no change	0.98661201075004	0.07606279264662776	0.3262272230374145	AT4G37330	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_195450.1 cytochrome P450, family 81, subfamily D, polypeptide 4 [Arabidopsis thaliana]	76	76	34	47
AT5G08790	no change	-1.1285700335929638	0.07614104930617847	0.3262272230374145	AT5G08790	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008361,regulation of cell size; GO:0009416,response to light stimulus; GO:0009611,response to wounding; GO:0009620,response to fungus; GO:0009744,response to sucrose; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0009793,embryo development ending in seed dormancy; GO:0010099,regulation of photomorphogenesis; GO:0010150,leaf senescence; GO:0043424,protein histidine kinase binding; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_680161.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Arabidopsis thaliana]	51	56	29	18
AT1G18390	no change	-2.436639535851949	0.07636878947561151	0.3266373879211547	AT1G18390	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0030247,polysaccharide binding;	--	NP_173275.4 Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]	11	10	9	2
AT4G21740	no change	-1.3698263925573002	0.07649347080589713	0.3266373879211547	AT4G21740	--	GO:0016020,membrane;	--	NP_193905.1 transmembrane protein [Arabidopsis thaliana]	60	27	21	17
AT1G67090	no change	0.5210207509011733	0.07694772954483554	0.32802675325227215	AT1G67090	--	GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016984,ribulose-bisphosphate carboxylase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0022626,cytosolic ribosome; GO:0031969,chloroplast membrane; GO:0031977,thylakoid lumen; GO:0048046,apoplast; GO:0110102,ribulose bisphosphate carboxylase complex assembly; GO:1901149,salicylic acid binding;	rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]; K01602;	NP_176880.1 ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]	50026	39712	27807	23450
AT4G38225	no change	1.235565583941492	0.07709742950213869	0.3281153145199715	AT4G38225	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_974705.1 glycerol kinase [Arabidopsis thaliana]	63	43	49	36
AT4G10920	no change	-0.9659872554907905	0.07786595279088257	0.33025606624262743	AT4G10920	--	GO:0003677,DNA binding; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0060261,positive regulation of transcription initiation by RNA polymerase II;	--	NP_001078372.1 transcriptional coactivator p15 (PC4) family protein (KELP) [Arabidopsis thaliana]	104	74	76	43
AT5G39600	no change	-0.8327734544323491	0.07792716602408953	0.33025606624262743	AT5G39600	--	GO:0005739,mitochondrion; GO:0005762,mitochondrial large ribosomal subunit; GO:0005840,ribosome; GO:0008150,biological_process; GO:1990904,ribonucleoprotein complex;	--	NP_001318707.1 39S ribosomal protein [Arabidopsis thaliana]	89	55	61	38
AT4G37320	no change	-1.0761821534198486	0.07798974295159886	0.33025606624262743	AT4G37320	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_195449.1 cytochrome P450, family 81, subfamily D, polypeptide 5 [Arabidopsis thaliana]	85	101	62	47
AT4G21780	no change	2.495721728977763	0.07848335231255552	0.3314024516216361	AT4G21780	--	--	--	NP_001328477.1 hypothetical protein AT4G21780 [Arabidopsis thaliana]	7	6	8	5
AT1G03730	no change	-1.6878814848552537	0.07852089521722852	0.3314024516216361	AT1G03730	--	GO:0016020,membrane;	--	NP_563690.1 pyrroline-5-carboxylate reductase [Arabidopsis thaliana]	28	15	14	6
AT3G57830	no change	0.9768906209885788	0.07890041702709633	0.33245291611582806	AT3G57830	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001326829.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	67	75	45	30
AT3G63540	no change	1.081661289224563	0.07939269758435138	0.33309464373729525	AT3G63540	--	GO:0005509,calcium ion binding; GO:0009523,photosystem II; GO:0009654,photosystem II oxygen evolving complex; GO:0015979,photosynthesis; GO:0019898,extrinsic component of membrane;	--	NP_001190172.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein), partial [Arabidopsis thaliana]	311	256	158	136
AT4G27950	no change	1.5174882797872409	0.07943533771126741	0.33309464373729525	AT4G27950	ERF	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development;	--	NP_194524.2 cytokinin response factor 4 [Arabidopsis thaliana]	50	24	34	20
AT2G29540	no change	1.4538295187834969	0.07953360129206952	0.33309464373729525	AT2G29540	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005515,protein binding; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0046983,protein dimerization activity;	RPC19, POLR1D; DNA-directed RNA polymerases I and III subunit RPAC2; K03020;	NP_001031443.1 RNApolymerase 14 kDa subunit [Arabidopsis thaliana]	10	21	27	18
AT1G78830	no change	-0.6002648790968408	0.07957624494784893	0.33309464373729525	AT1G78830	--	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_565191.1 Curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana]	255	279	149	123
AT5G44040	no change	1.5886950453677215	0.08029627408143658	0.3355566790431134	AT5G44040	--	GO:0007142,male meiosis II;	--	NP_199217.1 eisosome SEG2-like protein [Arabidopsis thaliana]	52	40	45	20
AT1G78210	no change	-0.7376852135405718	0.08047783398799736	0.3357640778679562	AT1G78210	--	GO:0003674,molecular_function; GO:0003824,catalytic activity;	--	NP_565173.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	444	374	298	213
AT2G44130	no change	-0.4848075277562658	0.08090549481271923	0.3363430555303016	AT2G44130	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:2000762,regulation of phenylpropanoid metabolic process;	--	NP_566009.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	342	294	209	147
AT1G50630	no change	1.1290464513231733	0.08097303931885406	0.3363430555303016	AT1G50630	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_564578.1 extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]	21	26	39	29
AT4G23890	no change	-0.9402678790787178	0.08101308174462667	0.3363430555303016	AT4G23890	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009767,photosynthetic electron transport chain; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0048038,quinone binding;	ndhS; NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [EC:1.6.5.-]; K00345;	NP_194120.1 NAD(P)H-quinone oxidoreductase subunit S [Arabidopsis thaliana]	127	78	72	57
AT3G29240	no change	-0.9928147538781767	0.08128098399094709	0.3369057072588931	AT3G29240	--	GO:0003674,molecular_function; GO:0009507,chloroplast;	--	NP_566847.1 PPR containing protein (DUF179) [Arabidopsis thaliana]	436	429	256	284
AT3G11470	no change	-1.4067227821447794	0.08181893407347846	0.3370969651314928	AT3G11470	--	GO:0000287,magnesium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008897,holo-[acyl-carrier-protein] synthase activity; GO:0016740,transferase activity; GO:0018215,protein phosphopantetheinylation; GO:0019878,lysine biosynthetic process via aminoadipic acid;	LYS5, acpT; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]; K06133;	NP_187754.2 4'-phosphopantetheinyl transferase superfamily [Arabidopsis thaliana]	24	22	20	12
AT1G48600	no change	-0.8443953595357749	0.08186499327341284	0.3370969651314928	AT1G48600	--	GO:0000234,phosphoethanolamine N-methyltransferase activity; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006656,phosphatidylcholine biosynthetic process; GO:0008168,methyltransferase activity; GO:0008654,phospholipid biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0052667,phosphomethylethanolamine N-methyltransferase activity; GO:0071704,organic substance metabolic process;	E2.1.1.103, NMT; phosphoethanolamine N-methyltransferase [EC:2.1.1.103]; K05929;	NP_973993.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	409	411	222	166
AT1G73200	no change	1.2535655558633731	0.08193321621537697	0.3370969651314928	AT1G73200	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_177463.1 testis-expressed sequence 2-like protein (DUF2404) [Arabidopsis thaliana]	130	89	71	41
AT5G18110	no change	0.5747296582941868	0.08207211681073631	0.3370969651314928	AT5G18110	--	GO:0000340,RNA 7-methylguanosine cap binding; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006412,translation; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0009615,response to virus; GO:0016281,eukaryotic translation initiation factor 4F complex;	EIF4E; translation initiation factor 4E; K03259;	NP_197312.1 Putative cap-binding protein [Arabidopsis thaliana]	131	110	135	91
AT3G47440	no change	-1.5585915098873624	0.08220722278139125	0.3370969651314928	AT3G47440	--	GO:0005739,mitochondrion; GO:0006833,water transport; GO:0015204,urea transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0015840,urea transport; GO:0016020,membrane; GO:0048235,pollen sperm cell differentiation; GO:0055085,transmembrane transport; GO:0071918,urea transmembrane transport; GO:0090406,pollen tube;	--	NP_190328.1 tonoplast intrinsic protein 5;1 [Arabidopsis thaliana]	38	17	10	9
AT5G03190	no change	-1.19657763722231	0.08223316010477219	0.3370969651314928	AT5G03190	--	GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_195939.1 peptide upstream protein [Arabidopsis thaliana]	39	40	17	17
AT2G02750	no change	-0.983464429015914	0.0823842124276353	0.3370969651314928	AT2G02750	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle;	--	NP_178378.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	65	62	56	43
AT1G59900	no change	-0.9683699754057074	0.08238676318734323	0.3370969651314928	AT1G59900	--	GO:0004739,pyruvate dehydrogenase (acetyl-transferring) activity; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006086,acetyl-CoA biosynthetic process from pyruvate; GO:0006096,glycolytic process; GO:0016491,oxidoreductase activity; GO:0016624,oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor; GO:0043231,intracellular membrane-bounded organelle; GO:0046686,response to cadmium ion;	PDHA, pdhA; pyruvate dehydrogenase E1 component alpha subunit [EC:1.2.4.1]; K00161;	NP_176198.1 pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana]	588	559	377	298
AT5G60870	no change	1.2893801780861258	0.0825861496731813	0.3373703867066556	AT5G60870	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006974,cellular response to DNA damage stimulus; GO:0008380,RNA splicing; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0072702,response to methyl methanesulfonate; GO:2001020,regulation of response to DNA damage stimulus;	--	NP_001078775.1 Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]	23	21	22	22
AT5G14440	no change	1.076328450695705	0.08386070514321926	0.3419754272464724	AT5G14440	--	--	--	NP_001031882.1 Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]	62	59	66	71
AT4G16500	no change	-0.8571427930639635	0.08416549571422428	0.3419754272464724	AT4G16500	--	GO:0000325,plant-type vacuole; GO:0004869,cysteine-type endopeptidase inhibitor activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0010466,negative regulation of peptidase activity; GO:0010951,negative regulation of endopeptidase activity; GO:0030414,peptidase inhibitor activity; GO:0099503,secretory vesicle;	--	NP_001319960.1 Cystatin/monellin superfamily protein [Arabidopsis thaliana]	350	243	110	92
AT1G22910	no change	1.3768251597826016	0.08433684521796385	0.3419754272464724	AT1G22910	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0030154,cell differentiation;	--	NP_973888.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	92	83	37	35
AT2G27900	no change	0.7546800695058611	0.08437285791687871	0.3419754272464724	AT2G27900	--	GO:0000149,SNARE binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0032456,endocytic recycling; GO:0042147,retrograde transport, endosome to Golgi; GO:1990745,EARP complex;	--	NP_001031433.1 coiled-coil protein [Arabidopsis thaliana]	164	135	144	101
AT5G61260	no change	1.7041791586254649	0.08438529206710595	0.3419754272464724	AT5G61260	--	GO:0005516,calmodulin binding; GO:0008150,biological_process;	--	NP_001318853.1 Plant calmodulin-binding protein-like protein [Arabidopsis thaliana]	29	19	12	12
AT1G06470	no change	-0.8777527298716681	0.08458595251734898	0.342243639358749	AT1G06470	--	GO:0005793,endoplasmic reticulum-Golgi intermediate compartment; GO:0005794,Golgi apparatus; GO:0005801,cis-Golgi network; GO:0008643,carbohydrate transport; GO:0015297,antiporter activity; GO:0015786,UDP-glucose transmembrane transport; GO:0016020,membrane;	--	NP_001318934.1 Nucleotide/sugar transporter family protein [Arabidopsis thaliana]	75	80	47	31
AT5G47200	no change	-0.5664278733551331	0.0848044504132829	0.34258305762191266	AT5G47200	--	GO:0000139,Golgi membrane; GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	RAB1A; Ras-related protein Rab-1A; K07874;	NP_568678.1 RAB GTPase homolog 1A [Arabidopsis thaliana]	465	346	320	207
AT3G04010	no change	1.4350233127638568	0.08533877110775297	0.3439928812961888	AT3G04010	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_187051.3 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	36	19	34	7
AT1G08560	no change	1.3522692730400223	0.08545948567514884	0.3439928812961888	AT1G08560	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0006887,exocytosis; GO:0006906,vesicle fusion; GO:0007049,cell cycle; GO:0009504,cell plate; GO:0009506,plasmodesma; GO:0009524,phragmoplast; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0048278,vesicle docking; GO:0051301,cell division; GO:0061025,membrane fusion; GO:0110165,cellular anatomical entity;	STX1B_2_3; syntaxin 1B/2/3; K08486;	NP_172332.1 syntaxin of plants 111 [Arabidopsis thaliana]	397	394	253	198
AT2G47000	no change	1.6744001410226996	0.08555893668388509	0.3439928812961888	AT2G47000	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0009630,gravitropism; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009735,response to cytokinin; GO:0009926,auxin polar transport; GO:0010315,auxin export across the plasma membrane; GO:0010328,auxin influx transmembrane transporter activity; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010540,basipetal auxin transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0060919,auxin import into cell; GO:0140359,ABC-type transporter activity;	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658;	NP_001323911.1 ATP binding cassette subfamily B4 [Arabidopsis thaliana]	23	3	22	19
AT5G67360	no change	0.8795416481918306	0.0857852059832567	0.3440079088493844	AT5G67360	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0010214,seed coat development; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0048359,mucilage metabolic process involved in seed coat development; GO:0080001,mucilage extrusion from seed coat; GO:0099503,secretory vesicle;	--	NP_569048.1 Subtilase family protein [Arabidopsis thaliana]	3188	2919	1973	1522
AT4G12290	no change	1.2735714389201824	0.08583301458520987	0.3440079088493844	AT4G12290	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009753,response to jasmonic acid; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; GO:1903426,regulation of reactive oxygen species biosynthetic process;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_192966.5 Copper amine oxidase family protein [Arabidopsis thaliana]	756	636	561	441
AT4G25835	no change	-0.9888002170184692	0.08620580586806095	0.3449587671921621	AT4G25835	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0006950,response to stress; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_567730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	61	62	30	24
AT2G44730	no change	0.8631499105829379	0.08656197037124498	0.3458402112948485	AT2G44730	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0019760,glucosinolate metabolic process;	--	NP_182001.1 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Arabidopsis thaliana]	121	98	72	54
AT1G54500	no change	-1.1154181846235325	0.08721389792787725	0.3475412967095894	AT1G54500	--	GO:0005506,iron ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0043448,alkane catabolic process; GO:0046872,metal ion binding;	--	NP_175852.1 Rubredoxin-like superfamily protein [Arabidopsis thaliana]	78	58	42	25
AT1G71190	no change	-1.377916666208927	0.08726085995969651	0.3475412967095894	AT1G71190	--	GO:0006665,sphingolipid metabolic process; GO:0006672,ceramide metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	--	NP_177275.1 senescence associated gene 18 [Arabidopsis thaliana]	68	37	22	17
AT2G23290	no change	-1.2898292652462402	0.08769680524802764	0.34873182711910994	AT2G23290	MYB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_179910.1 myb domain protein 70 [Arabidopsis thaliana]	46	50	30	26
AT3G59310	no change	1.4484068671545494	0.08814832953816047	0.34996876935645244	AT3G59310	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_191490.2 solute carrier family 35 protein (DUF914) [Arabidopsis thaliana]	15	16	21	15
AT1G50240	no change	0.5854620190031223	0.0882828879869715	0.34996876935645244	AT1G50240	--	GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0006468,protein phosphorylation; GO:0007112,male meiosis cytokinesis; GO:0009524,phragmoplast; GO:0009558,embryo sac cellularization; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019894,kinesin binding; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	FU; fused [EC:2.7.11.1]; K06228;	NP_001319189.1 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]	145	128	94	74
AT3G44750	no change	0.8737859254011529	0.08865456419832847	0.3508587315710059	AT3G44750	C2H2	GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048364,root development;	--	NP_566872.1 histone deacetylase 3 [Arabidopsis thaliana]	482	414	486	431
AT3G13470	no change	-0.5546432286362979	0.08878311321482428	0.3508587315710059	AT3G13470	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006457,protein folding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0022626,cytosolic ribosome; GO:0042026,protein refolding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0140662,ATP-dependent protein folding chaperone;	groEL, HSPD1; chaperonin GroEL; K04077;	NP_187956.1 TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]	659	681	382	229
AT1G05560	no change	1.0318460201212378	0.08984041610805606	0.3542738686444151	AT1G05560	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005856,cytoskeleton; GO:0008194,UDP-glycosyltransferase activity; GO:0009524,phragmoplast; GO:0009751,response to salicylic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0046482,para-aminobenzoic acid metabolic process; GO:0047215,indole-3-acetate beta-glucosyltransferase activity; GO:0048471,perinuclear region of cytoplasm; GO:0080002,UDP-glucose:4-aminobenzoate acylglucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_001320882.1 UDP-glucosyltransferase 75B1 [Arabidopsis thaliana]	40	44	29	25
AT3G45060	no change	1.312564534270047	0.08992570496828768	0.3542738686444151	AT3G45060	--	GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0015112,nitrate transmembrane transporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0055085,transmembrane transport; GO:0071249,cellular response to nitrate;	NRT, narK, nrtP, nasA; MFS transporter, NNP family, nitrate/nitrite transporter; K02575;	NP_190092.1 high affinity nitrate transporter 2.6 [Arabidopsis thaliana]	28	15	20	22
AT3G25520	no change	-0.8442615837834468	0.0904678587218675	0.35585888786267816	AT3G25520	--	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0006913,nucleocytoplasmic transport; GO:0008097,5S rRNA binding; GO:0009507,chloroplast; GO:0009955,adaxial/abaxial pattern specification; GO:0009965,leaf morphogenesis; GO:0010015,root morphogenesis; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:0051301,cell division; GO:1990904,ribonucleoprotein complex;	RP-L5e, RPL5; large subunit ribosomal protein L5e; K02932;	NP_001327862.1 ribosomal protein L5 [Arabidopsis thaliana]	2163	1929	1858	1549
AT1G04760	no change	-1.5247678208629356	0.0906286126391089	0.35594107896069777	AT1G04760	--	GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031901,early endosome membrane;	--	NP_001323352.1 vesicle-associated membrane protein 726 [Arabidopsis thaliana]	25	21	11	9
AT4G05190	no change	0.996013606182645	0.09127420356291006	0.35792426512728215	AT4G05190	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0007018,microtubule-based movement; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0016887,ATP hydrolysis activity; GO:0051225,spindle assembly; GO:0051301,cell division;	--	NP_192428.2 kinesin 5 [Arabidopsis thaliana]	83	82	60	25
AT5G01210	no change	0.5389287675427559	0.09151866410640912	0.3583307694627865	AT5G01210	--	GO:0016740,transferase activity;	--	NP_195741.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	232	201	135	77
AT3G63500	no change	0.5080140503959596	0.09198989905403644	0.35962257003459713	AT3G63500	--	GO:0001708,cell fate specification; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009880,embryonic pattern specification; GO:0046872,metal ion binding; GO:0090421,embryonic meristem initiation;	--	NP_001326078.1 fibronectin type III domain protein (DUF1423) [Arabidopsis thaliana]	200	149	132	127
AT2G31380	no change	-0.8986505827819942	0.0921328485855964	0.3596289871937774	AT2G31380	DBB	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009640,photomorphogenesis; GO:0010100,negative regulation of photomorphogenesis; GO:0046872,metal ion binding;	--	NP_565722.1 salt tolerance homologue [Arabidopsis thaliana]	76	69	53	27
AT2G33830	no change	0.9663448336756896	0.09242672985029228	0.3602236255267899	AT2G33830	--	GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0009617,response to bacterium;	--	NP_001318345.1 Dormancy/auxin associated family protein [Arabidopsis thaliana]	146	207	159	174
AT4G35300	no change	-0.8712644253967374	0.09283076156124544	0.3612450889501065	AT4G35300	--	GO:0000325,plant-type vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009705,plant-type vacuole membrane; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0009750,response to fructose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902074,response to salt;	--	NP_001190923.1 tonoplast monosaccharide transporter2 [Arabidopsis thaliana]	893	678	480	428
AT3G27690	no change	-0.9368885822840802	0.09306536342232696	0.3616051143661406	AT3G27690	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0009941,chloroplast envelope; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0030104,water homeostasis; GO:0046872,metal ion binding; GO:0071215,cellular response to abscisic acid stimulus; GO:0090333,regulation of stomatal closure; GO:1903428,positive regulation of reactive oxygen species biosynthetic process;	LHCB2; light-harvesting complex II chlorophyll a/b binding protein 2; K08913;	NP_001325794.1 photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]	1698	1545	690	486
AT5G08670	no change	-1.015293483259212	0.09346932014013004	0.3617587868711524	AT5G08670	--	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0005524,ATP binding; GO:0006754,ATP biosynthetic process; GO:0015986,proton motive force-driven ATP synthesis; GO:0016887,ATP hydrolysis activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046034,ATP metabolic process; GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2]; K02133;	NP_568203.2 ATP synthase alpha/beta family protein [Arabidopsis thaliana]	2043	1881	1613	1436
AT3G01980	no change	-0.7979424679364504	0.09356720430886896	0.3617587868711524	AT3G01980	--	GO:0005777,peroxisome; GO:0016020,membrane;	--	NP_001078091.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	625	509	414	300
AT3G63140	no change	-0.6992623300380965	0.09365834098534644	0.3617587868711524	AT3G63140	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast;	--	NP_191873.1 chloroplast stem-loop binding protein of 41 kDa [Arabidopsis thaliana]	711	596	210	149
AT4G26970	no change	-0.8614561804040033	0.09379407613331872	0.3617587868711524	AT4G26970	--	GO:0003994,aconitate hydratase activity; GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006097,glyoxylate cycle; GO:0006099,tricarboxylic acid cycle; GO:0006101,citrate metabolic process; GO:0006102,isocitrate metabolic process; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0030350,iron-responsive element binding; GO:0043436,oxoacid metabolic process; GO:0046872,metal ion binding; GO:0047780,citrate dehydratase activity; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:1990641,response to iron ion starvation;	ACO, acnA; aconitate hydratase [EC:4.2.1.3]; K01681;	NP_567763.2 aconitase 2 [Arabidopsis thaliana]	892	875	526	477
AT1G69910	no change	-0.6615908573962077	0.09381563824556408	0.3617587868711524	AT1G69910	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_177149.2 Protein kinase superfamily protein [Arabidopsis thaliana]	226	143	110	106
AT1G01170	no change	-0.554753223743067	0.09414785583663857	0.36249060984000775	AT1G01170	--	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_001030926.1 ozone-responsive stress-like protein (DUF1138) [Arabidopsis thaliana]	146	199	146	100
AT2G32890	no change	-1.1269584083323083	0.09477303083637534	0.363557559189097	AT2G32890	--	GO:0005179,hormone activity; GO:0005576,extracellular region; GO:0007267,cell-cell signaling; GO:0019722,calcium-mediated signaling; GO:0048046,apoplast;	--	NP_180848.1 RALF-like 17 [Arabidopsis thaliana]	43	61	23	10
AT5G44785	no change	-0.7099487017352688	0.09479701786025428	0.363557559189097	AT5G44785	--	GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005739,mitochondrion; GO:0006260,DNA replication; GO:0006264,mitochondrial DNA replication; GO:0009295,nucleoid; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042645,mitochondrial nucleoid; GO:0051096,positive regulation of helicase activity;	--	NP_568639.1 organellar single-stranded DNA binding protein 3 [Arabidopsis thaliana]	114	75	65	97
AT5G22830	no change	-0.9504147551680332	0.09485352428352078	0.363557559189097	AT5G22830	--	GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010117,photoprotection; GO:0010960,magnesium ion homeostasis; GO:0015095,magnesium ion transmembrane transporter activity; GO:0015693,magnesium ion transport; GO:0016020,membrane; GO:0030001,metal ion transport; GO:0031969,chloroplast membrane; GO:0046873,metal ion transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1903830,magnesium ion transmembrane transport;	--	NP_001332159.1 magnesium (Mg) transporter 10 [Arabidopsis thaliana]	282	221	148	103
AT3G08020	no change	0.7926706974718911	0.09557737685563908	0.36536457796166577	AT3G08020	--	GO:0003712,transcription coregulator activity; GO:0006351,DNA-templated transcription; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_187459.2 PHD finger family protein [Arabidopsis thaliana]	69	43	64	48
AT2G27130	no change	1.1914816778571904	0.09562422950640807	0.36536457796166577	AT2G27130	--	GO:0003674,molecular_function; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_565637.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	43	37	29	34
AT3G16470	no change	-0.29880371431737696	0.09589230235520511	0.36536457796166577	AT3G16470	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009611,response to wounding; GO:0009753,response to jasmonic acid; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0030246,carbohydrate binding;	--	NP_001189913.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	703	754	571	415
AT1G06070	no change	-1.2007991786561778	0.09613743697106789	0.36536457796166577	AT1G06070	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_172097.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]	91	68	64	37
AT4G29900	no change	0.6869452120886512	0.09613892514196289	0.36536457796166577	AT4G29900	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_001327988.1 autoinhibited Ca(2+)-ATPase 10 [Arabidopsis thaliana]	384	344	276	338
AT4G21190	no change	1.2779813564692653	0.09618635254786484	0.36536457796166577	AT4G21190	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_567622.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	18	15	45	23
AT5G42020	no change	-1.007891939645612	0.09744782412801029	0.3688837507023311	AT5G42020	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016020,membrane; GO:0016592,mediator complex; GO:0016887,ATP hydrolysis activity; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0034663,endoplasmic reticulum chaperone complex; GO:0034976,response to endoplasmic reticulum stress; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone;	HSPA5, BIP; endoplasmic reticulum chaperone BiP [EC:3.6.4.10]; K09490;	NP_851119.1 Heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]	1084	919	550	336
AT5G37890	no change	-0.8952652015989973	0.09749627598313654	0.3688837507023311	AT5G37890	--	GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0007275,multicellular organism development; GO:0008270,zinc ion binding; GO:0009411,response to UV; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	SIAH1; E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]; K04506;	NP_198605.2 Protein with RING/U-box and TRAF-like domain [Arabidopsis thaliana]	72	64	61	27
AT1G65520	no change	-1.4461976014374702	0.09754764802462432	0.3688837507023311	AT1G65520	--	GO:0003824,catalytic activity; GO:0004165,delta(3)-delta(2)-enoyl-CoA isomerase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0009062,fatty acid catabolic process; GO:0016853,isomerase activity;	ECI1_2; Delta3-Delta2-enoyl-CoA isomerase [EC:5.3.3.8]; K07517;	NP_176730.1 delta(3), delta(2)-enoyl CoA isomerase 1 [Arabidopsis thaliana]	22	29	12	9
AT3G53380	no change	1.3693015707102134	0.09804980302570793	0.3702325648374283	AT3G53380	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_190906.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana]	70	60	47	27
AT1G62380	no change	-0.9221109005959498	0.09825043905170418	0.37044054427642537	AT1G62380	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009693,ethylene biosynthetic process; GO:0009727,detection of ethylene stimulus; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0010030,positive regulation of seed germination; GO:0016491,oxidoreductase activity; GO:0031418,L-ascorbic acid binding; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0071398,cellular response to fatty acid; GO:0071732,cellular response to nitric oxide;	E1.14.17.4; aminocyclopropanecarboxylate oxidase [EC:1.14.17.4]; K05933;	NP_176428.1 ACC oxidase 2 [Arabidopsis thaliana]	11675	10372	4442	3364
AT3G10620	no change	0.8512512415338929	0.09854199195047532	0.3709901915886978	AT3G10620	--	GO:0006753,nucleoside phosphate metabolic process; GO:0008893,guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016462,pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0019693,ribose phosphate metabolic process; GO:0034432,bis(5'-adenosyl)-pentaphosphatase activity; GO:0046872,metal ion binding;	--	NP_187673.1 nudix hydrolase homolog 26 [Arabidopsis thaliana]	62	46	69	31
AT5G16940	no change	-2.1416774473677833	0.09883541048737074	0.3715452284938826	AT5G16940	--	GO:0008150,biological_process; GO:0016829,lyase activity; GO:0016846,carbon-sulfur lyase activity; GO:0046872,metal ion binding;	--	NP_001154714.1 carbon-sulfur lyase [Arabidopsis thaliana]	10	13	8	3
AT1G21170	no change	0.6930675619937716	0.10017812553142158	0.3760373591113096	AT1G21170	--	GO:0000145,exocyst; GO:0003674,molecular_function; GO:0006887,exocytosis; GO:0006893,Golgi to plasma membrane transport; GO:0015031,protein transport; GO:0060321,acceptance of pollen;	EXOC2, SEC5; exocyst complex component 2; K17637;	NP_173541.1 Exocyst complex component SEC5 [Arabidopsis thaliana]	83	79	81	58
AT1G76890	no change	1.1610710791449534	0.10066014410337872	0.3768349130195587	AT1G76890	Trihelix	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_177815.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	106	125	119	66
AT1G11330	no change	-0.6303623596545149	0.10068673510935162	0.3768349130195587	AT1G11330	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006955,immune response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0048544,recognition of pollen; GO:0106310,protein serine kinase activity;	--	NP_001320487.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]	170	149	80	63
AT3G05930	no change	0.6036691564489738	0.10132452412550108	0.3785557152647597	AT3G05930	--	GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0010497,plasmodesmata-mediated intercellular transport; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:2000280,regulation of root development;	--	NP_187244.1 germin-like protein 8 [Arabidopsis thaliana]	216	142	90	67
AT3G52040	no change	0.8341755651125915	0.1014440069982578	0.3785557152647597	AT3G52040	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_190772.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Arabidopsis thaliana]	44	63	68	38
AT4G17830	no change	0.5324246861342083	0.10187466600806164	0.378897517695541	AT4G17830	--	GO:0005829,cytosol; GO:0006526,arginine biosynthetic process; GO:0006592,ornithine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0008777,acetylornithine deacetylase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	argE; acetylornithine deacetylase [EC:3.5.1.16]; K01438;	NP_001190758.1 Peptidase M20/M25/M40 family protein [Arabidopsis thaliana]	187	222	146	77
AT2G42230	no change	0.5647117506240442	0.10190155618048516	0.378897517695541	AT2G42230	--	GO:0000922,spindle pole; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005815,microtubule organizing center; GO:0005856,cytoskeleton;	--	NP_973669.1 C-CAP/cofactor C-like domain-containing protein [Arabidopsis thaliana]	133	121	95	88
AT1G75960	no change	-1.0619284013554573	0.1021196982358506	0.378897517695541	AT1G75960	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_177724.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	48	85	15	10
AT2G47400	no change	0.8419494828465393	0.1021311187187195	0.378897517695541	AT2G47400	--	GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0016151,nickel cation binding; GO:0019253,reductive pentose-phosphate cycle; GO:0032991,protein-containing complex; GO:0080153,negative regulation of reductive pentose-phosphate cycle;	--	NP_566100.2 CP12 domain-containing protein 1 [Arabidopsis thaliana]	4916	4352	4106	3274
AT3G57710	no change	1.1240663491323488	0.10243819543092744	0.3794835624042363	AT3G57710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007166,cell surface receptor signaling pathway; GO:0009266,response to temperature stimulus; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:1900426,positive regulation of defense response to bacterium;	--	NP_191330.1 Protein kinase superfamily protein [Arabidopsis thaliana]	48	34	24	24
AT1G15720	no change	-1.1454490868360194	0.1029935114998311	0.3809861726265555	AT1G15720	MYB_related	--	--	NP_173024.1 TRF-like 5 [Arabidopsis thaliana]	41	35	22	13
AT5G03880	no change	1.0016127379938702	0.10320738961470503	0.38101499453013266	AT5G03880	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009941,chloroplast envelope;	--	NP_568128.1 Thioredoxin family protein [Arabidopsis thaliana]	184	148	156	154
AT1G52618	no change	2.362640689858132	0.10343427522550498	0.38101499453013266	AT1G52618	--	GO:0003674,molecular_function;	--	NP_001077705.1 hypothetical protein AT1G52618 [Arabidopsis thaliana]	4	1	10	10
AT3G46600	no change	0.9426513897382608	0.10345043662881008	0.38101499453013266	AT3G46600	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_001319695.1 GRAS family transcription factor [Arabidopsis thaliana]	60	61	26	31
AT2G18290	no change	1.1678532365424026	0.10409097772701602	0.3821605032152185	AT2G18290	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0007049,cell cycle; GO:0010087,phloem or xylem histogenesis; GO:0016567,protein ubiquitination; GO:0016604,nuclear body; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0032875,regulation of DNA endoreduplication; GO:0032876,negative regulation of DNA endoreduplication; GO:0051301,cell division; GO:0070979,protein K11-linked ubiquitination;	APC10, DOC1; anaphase-promoting complex subunit 10; K03357;	NP_565433.1 anaphase promoting complex 10 [Arabidopsis thaliana]	27	21	26	20
AT5G51670	no change	-1.2579570068328805	0.10430781702167256	0.3821605032152185	AT5G51670	--	GO:0045927,positive regulation of growth;	--	NP_001318781.1 hypothetical protein (DUF668) [Arabidopsis thaliana]	52	27	14	8
AT4G02510	no change	-0.2294327929704626	0.10439230803740417	0.3821605032152185	AT4G02510	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0004888,transmembrane signaling receptor activity; GO:0004930,G protein-coupled receptor activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0007186,G protein-coupled receptor signaling pathway; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0043024,ribosomal small subunit binding; GO:0045036,protein targeting to chloroplast; GO:0045037,protein import into chloroplast stroma; GO:0046872,metal ion binding; GO:0051087,chaperone binding; GO:0061927,TOC-TIC supercomplex I;	--	NP_001319848.1 translocon at the outer envelope membrane of chloroplasts 159 [Arabidopsis thaliana]	1941	1752	1514	1253
AT2G05810	no change	0.8215283428440223	0.10453127506810708	0.3821605032152185	AT2G05810	--	GO:0005515,protein binding;	--	NP_178638.1 ARM repeat superfamily protein [Arabidopsis thaliana]	54	58	51	35
AT5G13030	no change	0.7511779124635849	0.10459812597026188	0.3821605032152185	AT5G13030	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0046872,metal ion binding;	SELENOO, selO; serine/tyrosine/threonine adenylyltransferase [EC:2.7.7.-]; K08997;	NP_196807.2 selenoprotein O [Arabidopsis thaliana]	518	483	474	325
AT3G43600	no change	-1.076750724626697	0.10466242465265511	0.3821605032152185	AT3G43600	--	GO:0004031,aldehyde oxidase activity; GO:0005506,iron ion binding; GO:0005737,cytoplasm; GO:0009688,abscisic acid biosynthetic process; GO:0009851,auxin biosynthetic process; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0050302,indole-3-acetaldehyde oxidase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0071949,FAD binding;	AAO1_2; indole-3-acetaldehyde oxidase [EC:1.2.3.7]; K11817;	NP_189946.1 aldehyde oxidase 2 [Arabidopsis thaliana]	47	36	18	21
AT2G39280	no change	-1.0940392159017147	0.10563440124684877	0.38440807099196184	AT2G39280	--	GO:0005096,GTPase activator activity; GO:0090630,activation of GTPase activity;	--	NP_001189710.1 Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]	1941	1037	385	685
AT3G12140	no change	0.7774401763203018	0.10566093879840492	0.38440807099196184	AT3G12140	--	GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016020,membrane; GO:0050832,defense response to fungus;	--	NP_187821.1 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Arabidopsis thaliana]	60	46	64	43
AT5G27680	no change	1.3018424023428707	0.10573110007637455	0.38440807099196184	AT5G27680	--	GO:0000166,nucleotide binding; GO:0000724,double-strand break repair via homologous recombination; GO:0003676,nucleic acid binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0006268,DNA unwinding involved in DNA replication; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0009378,four-way junction helicase activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0032508,DNA duplex unwinding; GO:0043138,3'-5' DNA helicase activity; GO:0046872,metal ion binding;	--	NP_001330792.1 RECQ helicase SIM [Arabidopsis thaliana]	20	17	33	12
AT3G06790	no change	0.9295925217993456	0.10672242690885886	0.38745873963344624	AT3G06790	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0016554,cytidine to uridine editing; GO:0043170,macromolecule metabolic process; GO:0046983,protein dimerization activity; GO:0050897,cobalt ion binding; GO:0080156,mitochondrial mRNA modification; GO:1900864,mitochondrial RNA modification;	--	NP_974243.1 plastid developmental protein DAG [Arabidopsis thaliana]	69	61	110	55
AT5G64150	no change	-0.9900406406625332	0.10769661584146133	0.39043858592096736	AT5G64150	--	GO:0003676,nucleic acid binding; GO:0005515,protein binding; GO:0006479,protein methylation; GO:0008168,methyltransferase activity; GO:0008276,protein methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0019538,protein metabolic process; GO:0032259,methylation; GO:0043414,macromolecule methylation;	--	NP_201220.1 RNA methyltransferase family protein [Arabidopsis thaliana]	67	32	32	21
AT5G56660	no change	-1.4845769381862477	0.10787608590446116	0.39053291412070223	AT5G56660	--	GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0009850,auxin metabolic process; GO:0010178,IAA-amino acid conjugate hydrolase activity; GO:0010179,IAA-Ala conjugate hydrolase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_200477.1 IAA-leucine resistant (ILR)-like 2 [Arabidopsis thaliana]	12	29	29	7
AT5G05460	no change	2.277974853802931	0.10837722533927964	0.39178982739839013	AT5G05460	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006491,N-glycan processing; GO:0006517,protein deglycosylation; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0033925,mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity;	ENGASE; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]; K01227;	NP_196165.3 Glycosyl hydrolase family 85 [Arabidopsis thaliana]	4	12	11	3
AT2G46590	no change	1.2344628494345216	0.10865193603425025	0.3922257832725772	AT2G46590	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009845,seed germination; GO:0010030,positive regulation of seed germination; GO:0010161,red light signaling pathway; GO:0010372,positive regulation of gibberellin biosynthetic process; GO:0046872,metal ion binding; GO:0071462,cellular response to water stimulus; GO:0071491,cellular response to red light;	--	NP_182182.2 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	51	51	42	32
AT5G39570	no change	-0.5505581301765492	0.1089509493667726	0.39262725852498	AT5G39570	--	GO:0016020,membrane;	--	NP_001318706.1 transmembrane protein [Arabidopsis thaliana]	1918	1686	765	631
AT3G50890	no change	-1.2306480944159706	0.10907169814426756	0.39262725852498	AT3G50890	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding;	--	NP_190658.1 homeobox protein 28 [Arabidopsis thaliana]	58	51	23	20
AT1G33700	no change	-0.8678174541850119	0.10929293334402454	0.3928679595487888	AT1G33700	--	GO:0000325,plant-type vacuole; GO:0004348,glucosylceramidase activity; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0006629,lipid metabolic process; GO:0006680,glucosylceramide catabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	GBA2; non-lysosomal glucosylceramidase [EC:3.2.1.45]; K17108;	NP_001031135.1 Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]	61	57	30	31
AT2G42680	no change	0.4389708445047691	0.11001878802095962	0.3949193448707224	AT2G42680	--	GO:0003677,DNA binding; GO:0003713,transcription coactivator activity; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0045893,positive regulation of DNA-templated transcription;	MBF1; putative transcription factor; K03627;	NP_565981.1 multiprotein bridging factor 1A [Arabidopsis thaliana]	860	814	604	533
AT1G15780	no change	1.0085412666539053	0.11034758805226046	0.3955417064690181	AT1G15780	--	GO:0003712,transcription coregulator activity; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009751,response to salicylic acid; GO:0016592,mediator complex; GO:0031490,chromatin DNA binding; GO:0045723,positive regulation of fatty acid biosynthetic process; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_173030.1 mediator of RNA polymerase II transcription subunit 15a-like protein [Arabidopsis thaliana]	243	222	181	150
AT4G15630	no change	1.2471634416185573	0.11068271552606228	0.3961401962454883	AT4G15630	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043424,protein histidine kinase binding; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_567473.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	82	63	49	50
AT1G51170	no change	0.9267068988750607	0.1109571565290205	0.3961401962454883	AT1G51170	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0036290,protein trans-autophosphorylation; GO:0051782,negative regulation of cell division; GO:0080060,integument development; GO:0106310,protein serine kinase activity;	--	NP_564584.1 Protein kinase superfamily protein [Arabidopsis thaliana]	142	121	119	86
AT4G29140	no change	-1.2249223134548934	0.11104209548655106	0.3961401962454883	AT4G29140	--	GO:0005768,endosome; GO:0005770,late endosome; GO:0006952,defense response; GO:0010008,endosome membrane; GO:0010015,root morphogenesis; GO:0010252,auxin homeostasis; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0031348,negative regulation of defense response; GO:0031902,late endosome membrane; GO:0042910,xenobiotic transmembrane transporter activity; GO:0046620,regulation of organ growth; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_194643.1 MATE efflux family protein [Arabidopsis thaliana]	78	37	39	25
AT3G15550	no change	-0.7809920946397044	0.111137170970247	0.3961401962454883	AT3G15550	--	GO:0008150,biological_process;	--	NP_188174.4 trichohyalin [Arabidopsis thaliana]	112	101	64	54
AT1G23300	no change	-2.5126828445826135	0.11136258151152674	0.3963884894361336	AT1G23300	--	GO:0005774,vacuolar membrane; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_173744.1 MATE efflux family protein [Arabidopsis thaliana]	17	4	3	3
AT5G65480	no change	-1.301642713885494	0.11151980168307216	0.3963937084963948	AT5G65480	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0035091,phosphatidylinositol binding;	--	NP_201351.1 hypothetical protein AT5G65480 [Arabidopsis thaliana]	43	39	24	7
AT4G34980	no change	0.5335119691377024	0.11214553729165216	0.3980619140965896	AT4G34980	--	GO:0004252,serine-type endopeptidase activity; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0009827,plant-type cell wall modification; GO:0016787,hydrolase activity;	--	NP_567972.1 subtilisin-like serine protease 2 [Arabidopsis thaliana]	1657	1578	1126	820
AT2G31410	no change	-1.0117079737455992	0.1126340053670718	0.39847679667919295	AT2G31410	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process;	--	NP_565723.1 coiled-coil protein [Arabidopsis thaliana]	72	69	89	60
AT1G79110	no change	0.9977917719342352	0.11271922848171874	0.39847679667919295	AT1G79110	--	GO:0004842,ubiquitin-protein transferase activity; GO:0006952,defense response; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043067,regulation of programmed cell death; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding;	--	NP_974174.1 zinc ion binding protein [Arabidopsis thaliana]	70	54	55	76
AT4G14050	no change	1.7935169098838273	0.11273213894264004	0.39847679667919295	AT4G14050	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0016554,cytidine to uridine editing;	--	NP_001329428.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	42	14	7	6
AT1G48450	no change	-0.8864921436960405	0.11314900613071624	0.3993955902949693	AT1G48450	--	GO:0005515,protein binding; GO:0016874,ligase activity;	--	NP_001185170.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]	373	316	144	98
AT5G06860	no change	-0.5906345849700596	0.11350736476712682	0.4001056001832933	AT5G06860	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043086,negative regulation of catalytic activity; GO:0090353,polygalacturonase inhibitor activity; GO:0099503,secretory vesicle;	--	NP_196304.1 polygalacturonase inhibiting protein 1 [Arabidopsis thaliana]	142	146	72	47
AT5G22630	no change	-0.5872841143438401	0.11393754662140967	0.4007271351148891	AT5G22630	--	GO:0004664,prephenate dehydratase activity; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009094,L-phenylalanine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0047769,arogenate dehydratase activity;	ADT, PDT; arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51]; K05359;	NP_197655.1 arogenate dehydratase 5 [Arabidopsis thaliana]	219	155	77	68
AT1G06250	no change	1.058083680806738	0.11399860346686826	0.4007271351148891	AT1G06250	--	GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity;	--	NP_172115.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	35	39	20	24
AT3G27906	no change	-1.4787831635155817	0.11426629559229488	0.40077816171066294	AT3G27906	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001319659.1 hypothetical protein AT3G27906 [Arabidopsis thaliana]	25	26	15	4
AT3G62290	no change	1.186664982796284	0.11458061158256648	0.40077816171066294	AT3G62290	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0016004,phospholipase activator activity; GO:0016192,vesicle-mediated transport; GO:0050790,regulation of catalytic activity;	ARF1_2; ADP-ribosylation factor 1/2; K07937;	NP_001190161.1 ADP-ribosylation factor A1E [Arabidopsis thaliana]	1132	1056	691	576
AT2G47450	no change	0.7008668497870847	0.1146339415811126	0.40077816171066294	AT2G47450	--	GO:0005515,protein binding; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009644,response to high light intensity; GO:0009941,chloroplast envelope; GO:0019904,protein domain specific binding; GO:0030674,protein-macromolecule adaptor activity; GO:0032991,protein-containing complex; GO:0042802,identical protein binding; GO:0045038,protein import into chloroplast thylakoid membrane; GO:0046872,metal ion binding; GO:0070208,protein heterotrimerization; GO:0080085,signal recognition particle, chloroplast targeting; GO:0097718,disordered domain specific binding; GO:1990904,ribonucleoprotein complex;	--	NP_566101.1 chloroplast signal recognition particle component (CAO) [Arabidopsis thaliana]	445	428	324	265
AT4G36400	no change	-1.0622232129873534	0.114709422059323	0.40077816171066294	AT4G36400	--	GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0009853,photorespiration; GO:0010230,alternative respiration; GO:0016491,oxidoreductase activity; GO:0047545,2-hydroxyglutarate dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0051990,(R)-2-hydroxyglutarate dehydrogenase activity; GO:0071949,FAD binding;	D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39]; K18204;	NP_001320151.1 FAD-linked oxidases family protein [Arabidopsis thaliana]	171	160	116	99
AT5G42050	no change	0.9825146029948542	0.11480050290258284	0.40077816171066294	AT5G42050	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0010941,regulation of cell death; GO:0034976,response to endoplasmic reticulum stress; GO:0071456,cellular response to hypoxia; GO:1902074,response to salt; GO:1904350,regulation of protein catabolic process in the vacuole;	--	NP_568600.1 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]	676	611	647	491
AT5G04760	no change	-1.0323383315334436	0.11499301443314336	0.40090030374294494	AT5G04760	MYB	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009751,response to salicylic acid; GO:0090359,negative regulation of abscisic acid biosynthetic process; GO:1902074,response to salt;	--	NP_196096.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	56	43	30	11
AT1G32640	no change	0.4721264851969691	0.11577819474615755	0.4023747683811218	AT1G32640	bHLH	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006568,tryptophan metabolic process; GO:0009269,response to desiccation; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009753,response to jasmonic acid; GO:0009759,indole glucosinolate biosynthetic process; GO:0009963,positive regulation of flavonoid biosynthetic process; GO:0010374,stomatal complex development; GO:0019900,kinase binding; GO:0043565,sequence-specific DNA binding; GO:0043619,regulation of transcription from RNA polymerase II promoter in response to oxidative stress; GO:0045893,positive regulation of DNA-templated transcription; GO:0046983,protein dimerization activity; GO:0051090,regulation of DNA-binding transcription factor activity; GO:0051289,protein homotetramerization; GO:0090357,regulation of tryptophan metabolic process; GO:0106167,extracellular ATP signaling; GO:2000068,regulation of defense response to insect; GO:2000652,regulation of secondary cell wall biogenesis;	MYC2; transcription factor MYC2; K13422;	NP_174541.1 Basic helix-loop-helix (bHLH) DNA-binding family protein [Arabidopsis thaliana]	237	205	207	233
AT5G25060	no change	-0.42951101052003704	0.11578959918328158	0.4023747683811218	AT5G25060	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck;	SR140; U2-associated protein SR140; K12842;	NP_568464.1 RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	201	232	190	159
AT2G21660	no change	0.6975691333916725	0.11589025745515218	0.4023747683811218	AT2G21660	--	GO:0000380,alternative mRNA splicing, via spliceosome; GO:0002376,immune system process; GO:0003676,nucleic acid binding; GO:0003690,double-stranded DNA binding; GO:0003697,single-stranded DNA binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0006406,mRNA export from nucleus; GO:0006858,extracellular transport; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0007623,circadian rhythm; GO:0008380,RNA splicing; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0010043,response to zinc ion; GO:0010119,regulation of stomatal movement; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010501,RNA secondary structure unwinding; GO:0032508,DNA duplex unwinding; GO:0035197,siRNA binding; GO:0035198,miRNA binding; GO:0045087,innate immune response; GO:0050658,RNA transport; GO:0050688,regulation of defense response to virus; GO:1990428,miRNA transport;	--	NP_179760.1 cold, circadian rhythm, and rna binding 2 [Arabidopsis thaliana]	13696	13343	11607	8420
AT2G31100	no change	-1.1696407605492052	0.11619418997192704	0.40252086868486553	AT2G31100	--	--	--	NP_180668.6 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	55	32	24	19
AT1G25440	no change	1.1073256432721124	0.11624865952195526	0.40252086868486553	AT1G25440	CO-like	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_173915.2 B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]	430	453	347	314
AT1G79700	no change	-1.0625251939295255	0.11728296495284588	0.40555046984374016	AT1G79700	AP2	GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009873,ethylene-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045723,positive regulation of fatty acid biosynthetic process; GO:1901959,positive regulation of cutin biosynthetic process; GO:1904278,positive regulation of wax biosynthetic process;	--	NP_001077849.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	31	29	31	18
AT3G51740	no change	0.6087073117468611	0.11865714225121808	0.409745491220285	AT3G51740	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane;	--	NP_190742.1 inflorescence meristem receptor-like kinase 2 [Arabidopsis thaliana]	173	140	117	69
AT3G01430	no change	-2.0945527815260725	0.11924630545803697	0.4106697019551987	AT3G01430	--	--	--	NP_186792.1 NHL domain protein [Arabidopsis thaliana]	24	8	8	1
AT1G67940	no change	-0.8520744867560532	0.1192475087406255	0.4106697019551987	AT1G67940	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0035435,phosphate ion transmembrane transport;	--	NP_176961.1 non-intrinsic ABC protein 3 [Arabidopsis thaliana]	83	68	49	36
AT3G56850	no change	1.1161578443661249	0.1195031181982046	0.4109938321816631	AT3G56850	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009738,abscisic acid-activated signaling pathway; GO:0045893,positive regulation of DNA-templated transcription;	ABF; ABA responsive element binding factor; K14432;	NP_191244.1 ABA-responsive element binding protein 3 [Arabidopsis thaliana]	49	26	42	23
AT1G29200	no change	-2.0875574494784495	0.12002847369542936	0.4122435432589307	AT1G29200	--	GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_001322313.1 O-fucosyltransferase family protein [Arabidopsis thaliana]	14	14	8	1
AT1G64640	no change	-1.0159316878929605	0.12031991100718524	0.4126875653817876	AT1G64640	--	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0022900,electron transport chain;	--	NP_176645.3 early nodulin-like protein 8 [Arabidopsis thaliana]	108	76	54	46
AT3G23540	no change	1.100397625957303	0.12051747006152176	0.4128088308298423	AT3G23540	--	GO:0003674,molecular_function;	--	NP_001327699.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	71	68	51	33
AT2G34470	no change	-0.4777381127830762	0.12103255880108142	0.41339529706797834	AT2G34470	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0006807,nitrogen compound metabolic process; GO:0016151,nickel cation binding; GO:0043085,positive regulation of catalytic activity; GO:0043419,urea catabolic process; GO:0150006,urease activator complex; GO:1905182,positive regulation of urease activity;	ureG; urease accessory protein; K03189;	NP_180994.1 urease accessory protein G [Arabidopsis thaliana]	272	253	183	111
AT1G50910	no change	1.3725698587067932	0.12112884628515684	0.41339529706797834	AT1G50910	--	--	--	NP_175504.2 hypothetical protein AT1G50910 [Arabidopsis thaliana]	16	12	15	19
AT1G06660	no change	-1.236649826877921	0.12117598884585926	0.41339529706797834	AT1G06660	--	GO:0006355,regulation of DNA-templated transcription; GO:0007142,male meiosis II; GO:0009556,microsporogenesis; GO:0051321,meiotic cell cycle;	--	NP_172151.2 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit [Arabidopsis thaliana]	21	25	21	13
AT3G08940	no change	0.9723468973046964	0.12155994966053268	0.414150029298602	AT3G08940	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding;	LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915;	NP_187506.1 light harvesting complex photosystem II [Arabidopsis thaliana]	1206	1290	650	612
AT3G10960	no change	-0.6535319227937495	0.12199517511718803	0.4150771666754593	AT3G10960	--	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006863,purine nucleobase transport; GO:0015205,nucleobase transmembrane transporter activity; GO:0015853,adenine transport; GO:0015854,guanine transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1904823,purine nucleobase transmembrane transport;	--	NP_566384.1 AZA-guanine resistant1 [Arabidopsis thaliana]	123	94	49	52
AT4G08870	no change	1.0438500842478202	0.1225859254304054	0.4162731390787244	AT4G08870	--	GO:0000050,urea cycle; GO:0004053,arginase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006525,arginine metabolic process; GO:0006560,proline metabolic process; GO:0006570,tyrosine metabolic process; GO:0006591,ornithine metabolic process; GO:0008783,agmatinase activity; GO:0009445,putrescine metabolic process; GO:0009446,putrescine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0033388,putrescine biosynthetic process from arginine; GO:0033389,putrescine biosynthetic process from arginine, using agmatinase; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0050897,cobalt ion binding;	E3.5.3.1, rocF, arg; arginase [EC:3.5.3.1]; K01476;	NP_192626.1 Arginase/deacetylase superfamily protein [Arabidopsis thaliana]	290	251	299	197
AT1G07250	no change	-0.5831688039385514	0.12276553707657996	0.4162731390787244	AT1G07250	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_563784.2 UDP-glucosyl transferase 71C4 [Arabidopsis thaliana]	147	112	114	55
AT5G64570	no change	0.5598812668809368	0.12283737817215012	0.4162731390787244	AT5G64570	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0009627,systemic acquired resistance; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; GO:0048046,apoplast;	XYL4; xylan 1,4-beta-xylosidase [EC:3.2.1.37]; K15920;	NP_201262.1 beta-D-xylosidase 4 [Arabidopsis thaliana]	1506	1581	882	693
AT5G24460	no change	1.2007990034461289	0.12329055629167142	0.4169238403035048	AT5G24460	--	--	--	NP_197834.1 RING-H2 zinc finger protein [Arabidopsis thaliana]	11	15	35	20
AT1G15990	no change	1.3199750917266222	0.12335703408586998	0.4169238403035048	AT1G15990	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005249,voltage-gated potassium channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0090406,pollen tube;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_001319014.1 cyclic nucleotide gated channel 7 [Arabidopsis thaliana]	25	16	21	10
AT3G56990	no change	-0.8879352591475822	0.1238712154091966	0.4178622388138107	AT3G56990	--	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009561,megagametogenesis; GO:0016020,membrane; GO:0032040,small-subunit processome;	--	NP_191258.2 embryo sac development arrest 7 [Arabidopsis thaliana]	126	84	128	82
AT5G16040	no change	0.7534729194940359	0.12416201515019426	0.4178622388138107	AT5G16040	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0009536,plastid;	--	NP_197108.1 Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]	109	75	75	75
AT3G23820	no change	0.5631196213822047	0.12436258196615296	0.4178622388138107	AT3G23820	--	GO:0000138,Golgi trans cisterna; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0032580,Golgi cisterna membrane; GO:0033481,galacturonate biosynthetic process; GO:0050378,UDP-glucuronate 4-epimerase activity; GO:0050829,defense response to Gram-negative bacterium; GO:0050832,defense response to fungus;	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]; K08679;	NP_189024.1 UDP-D-glucuronate 4-epimerase 6 [Arabidopsis thaliana]	874	745	655	591
AT5G53340	no change	0.8990577476290058	0.12463810773769304	0.4178622388138107	AT5G53340	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008194,UDP-glycosyltransferase activity; GO:0008378,galactosyltransferase activity; GO:0010405,arabinogalactan protein metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0018258,protein O-linked glycosylation via hydroxyproline; GO:1990714,hydroxyproline O-galactosyltransferase activity;	--	NP_568791.1 Galactosyltransferase family protein [Arabidopsis thaliana]	51	46	62	29
AT3G52390	no change	1.141672616372988	0.12465768888731751	0.4178622388138107	AT3G52390	--	GO:0006259,DNA metabolic process; GO:0008150,biological_process; GO:0008296,3'-5'-exodeoxyribonuclease activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	tatD; TatD DNase family protein [EC:3.1.21.-]; K03424;	NP_190807.3 TatD related DNase [Arabidopsis thaliana]	28	25	15	41
AT5G48800	no change	0.6635267447069522	0.12466900745339923	0.4178622388138107	AT5G48800	--	GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_199691.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	80	58	67	64
AT4G32180	no change	-0.781247165753757	0.12518995877857472	0.4178622388138107	AT4G32180	--	GO:0000166,nucleotide binding; GO:0004594,pantothenate kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0015937,coenzyme A biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	PANK4; bifunctional protein PANK4; K24265;	NP_194945.3 pantothenate kinase 2 [Arabidopsis thaliana]	359	325	234	210
AT1G72370	no change	-0.7861578137293739	0.12569491533380725	0.4178622388138107	AT1G72370	--	GO:0000028,ribosomal small subunit assembly; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0006970,response to osmotic stress; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0015935,small ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-SAe, RPSA; small subunit ribosomal protein SAe; K02998;	NP_177381.1 40s ribosomal protein SA [Arabidopsis thaliana]	2317	2233	1816	1272
AT1G12110	no change	1.2808977680586011	0.12575508805006683	0.4178622388138107	AT1G12110	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006857,oligopeptide transport; GO:0009414,response to water deprivation; GO:0009635,response to herbicide; GO:0009734,auxin-activated signaling pathway; GO:0010167,response to nitrate; GO:0010540,basipetal auxin transport; GO:0015112,nitrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0048527,lateral root development; GO:0048573,photoperiodism, flowering; GO:0055085,transmembrane transport;	--	NP_563899.1 nitrate transporter 1.1 [Arabidopsis thaliana]	65	68	65	33
AT4G26510	no change	-0.4745909354166216	0.12580234373586333	0.4178622388138107	AT4G26510	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004845,uracil phosphoribosyltransferase activity; GO:0004849,uridine kinase activity; GO:0005524,ATP binding; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0008152,metabolic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0044206,UMP salvage; GO:0044211,CTP salvage; GO:1901564,organonitrogen compound metabolic process;	udk, UCK; uridine kinase [EC:2.7.1.48]; K00876;	NP_001320072.1 uridine kinase-like 4 [Arabidopsis thaliana]	191	170	126	82
AT1G15000	no change	-1.1184097611202413	0.1258245069246532	0.4178622388138107	AT1G15000	--	GO:0000325,plant-type vacuole; GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_172953.1 serine carboxypeptidase-like 50 [Arabidopsis thaliana]	45	30	18	19
AT5G10930	no change	1.4069513325861518	0.1258548352166921	0.4178622388138107	AT5G10930	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050896,response to stimulus; GO:0051592,response to calcium ion; GO:0106310,protein serine kinase activity;	--	NP_568241.2 CBL-interacting protein kinase 5 [Arabidopsis thaliana]	15	8	28	11
AT1G15040	no change	-0.6167366560538925	0.1258663388058251	0.4178622388138107	AT1G15040	--	GO:0005575,cellular_component; GO:0006541,glutamine metabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:2000032,regulation of secondary shoot formation;	--	NP_850943.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	204	203	76	56
AT3G46940	no change	-0.8985640187265442	0.1259333348409402	0.4178622388138107	AT3G46940	--	GO:0000287,magnesium ion binding; GO:0004170,dUTP diphosphatase activity; GO:0006226,dUMP biosynthetic process; GO:0006281,DNA repair; GO:0009117,nucleotide metabolic process; GO:0016787,hydrolase activity; GO:0042802,identical protein binding; GO:0046081,dUTP catabolic process; GO:0046872,metal ion binding;	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]; K01520;	NP_001325766.1 DUTP-PYROPHOSPHATASE-LIKE 1 [Arabidopsis thaliana]	182	179	107	76
AT3G09030	no change	0.7742620571835852	0.1263247074477676	0.4186150787168862	AT3G09030	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0015031,protein transport; GO:0016567,protein ubiquitination; GO:0050832,defense response to fungus; GO:0051260,protein homooligomerization;	--	NP_187515.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]	59	52	43	41
AT3G01280	no change	-0.5419417398839808	0.1266378530702243	0.4190991102404438	AT3G01280	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006952,defense response; GO:0008308,voltage-gated anion channel activity; GO:0009507,chloroplast; GO:0009617,response to bacterium; GO:0009941,chloroplast envelope; GO:0015288,porin activity; GO:0015698,inorganic anion transport; GO:0016020,membrane; GO:0046930,pore complex; GO:0055085,transmembrane transport; GO:0098656,anion transmembrane transport;	VDAC2; voltage-dependent anion channel protein 2; K15040;	NP_186777.1 voltage dependent anion channel 1 [Arabidopsis thaliana]	615	553	584	409
AT1G78050	no change	-0.859023506142865	0.1268001237269712	0.4190991102404438	AT1G78050	--	GO:0003824,catalytic activity; GO:0004619,phosphoglycerate mutase activity; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010167,response to nitrate; GO:0016853,isomerase activity; GO:0016868,intramolecular transferase activity, phosphotransferases; GO:0080033,response to nitrite;	PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]; K01834;	NP_177928.2 phosphoglycerate/bisphosphoglycerate mutase [Arabidopsis thaliana]	153	187	109	82
AT3G49601	no change	1.1991762788472649	0.12712205330678625	0.4196181915249948	AT3G49601	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_001118799.1 pre-mRNA-splicing factor [Arabidopsis thaliana]	266	257	182	179
AT2G03450	no change	1.3791918185328704	0.12797840945763897	0.4218977358415689	AT2G03450	--	GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	ACP7; acid phosphatase type 7; K22390;	NP_178444.1 purple acid phosphatase 9 [Arabidopsis thaliana]	23	11	22	20
AT3G52080	no change	-1.494157510769348	0.12850088236800197	0.4230721159463971	AT3G52080	--	GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006885,regulation of pH; GO:0012505,endomembrane system; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_190776.2 cation/hydrogen exchanger 28 [Arabidopsis thaliana]	17	32	5	12
AT1G43710	no change	1.216023652991165	0.12886216786527285	0.4237134589368468	AT1G43710	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006580,ethanolamine metabolic process; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0016831,carboxy-lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030170,pyridoxal phosphate binding; GO:0102705,serine decarboxylase activity; GO:1901564,organonitrogen compound metabolic process;	--	NP_175036.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]	359	276	217	175
AT3G49250	no change	-0.6637012414028991	0.1292028653669577	0.4240792995436896	AT3G49250	--	GO:0000419,RNA polymerase V complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006306,DNA methylation; GO:0031047,gene silencing by RNA; GO:0042803,protein homodimerization activity; GO:0080188,gene silencing by RNA-directed DNA methylation;	--	NP_566916.1 defective in meristem silencing 3 [Arabidopsis thaliana]	81	72	57	55
AT2G33845	no change	-0.9373488619662648	0.12930669408483425	0.4240792995436896	AT2G33845	--	GO:0003729,mRNA binding; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process;	--	NP_565774.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	56	92	69	45
AT3G15095	no change	0.6073846677407317	0.1296539550142354	0.4246709337338856	AT3G15095	--	GO:0009507,chloroplast; GO:0010207,photosystem II assembly;	--	NP_188128.1 Serine/Threonine-kinase pakA-like protein [Arabidopsis thaliana]	496	381	287	312
AT1G69370	no change	-1.011369056638873	0.13003659163035938	0.4253767682509828	AT1G69370	--	GO:0000162,tryptophan biosynthetic process; GO:0003824,catalytic activity; GO:0004106,chorismate mutase activity; GO:0005737,cytoplasm; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016853,isomerase activity; GO:0042742,defense response to bacterium; GO:0042803,protein homodimerization activity; GO:0044281,small molecule metabolic process; GO:0046417,chorismate metabolic process; GO:1901747,prephenate(2-) biosynthetic process;	E5.4.99.5; chorismate mutase [EC:5.4.99.5]; K01850;	NP_177096.1 chorismate mutase 3 [Arabidopsis thaliana]	57	47	22	38
AT5G08340	no change	-1.949100564381844	0.13034848662829104	0.425542991143904	AT5G08340	--	GO:0000166,nucleotide binding; GO:0003919,FMN adenylyltransferase activity; GO:0005524,ATP binding; GO:0006747,FAD biosynthetic process; GO:0009231,riboflavin biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity;	RIBF; FAD synthetase [EC:2.7.7.2]; K22949;	NP_568192.2 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]	22	18	10	0
AT2G25050	no change	-0.771685251943893	0.13042182046846568	0.425542991143904	AT2G25050	--	--	--	NP_001318287.1 actin-binding FH2 (formin 2) family protein [Arabidopsis thaliana]	77	50	38	43
AT5G26340	no change	-0.9149289584795977	0.13068105175655817	0.4257298071554347	AT5G26340	--	GO:0005358,high-affinity glucose:proton symporter activity; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0008645,hexose transmembrane transport; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0009679,hexose:proton symporter activity; GO:0009737,response to abscisic acid; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1904659,glucose transmembrane transport;	--	NP_198006.1 Major facilitator superfamily protein [Arabidopsis thaliana]	272	248	214	105
AT5G66530	no change	0.5334786969528338	0.1308458557640249	0.4257298071554347	AT5G66530	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016853,isomerase activity; GO:0030246,carbohydrate binding; GO:0047938,glucose-6-phosphate 1-epimerase activity; GO:0048046,apoplast;	E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]; K01792;	NP_001190635.1 Galactose mutarotase-like superfamily protein [Arabidopsis thaliana]	166	191	82	107
AT4G35040	no change	0.6490834922122222	0.13098091905803746	0.4257298071554347	AT4G35040	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010043,response to zinc ion;	--	NP_001320139.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]	61	55	82	61
AT1G59720	no change	-1.1525836205946811	0.13117551540672437	0.42581847794657335	AT1G59720	--	GO:0004519,endonuclease activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016556,mRNA modification; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	--	NP_176180.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	45	25	16	11
AT1G09270	no change	-0.6684619099620974	0.13136241879665406	0.425881981958579	AT1G09270	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0006606,protein import into nucleus; GO:0006607,NLS-bearing protein import into nucleus; GO:0008139,nuclear localization sequence binding; GO:0015031,protein transport; GO:0030581,symbiont intracellular protein transport in host; GO:0043657,host cell; GO:0061608,nuclear import signal receptor activity; GO:0080034,host response to induction by symbiont of tumor, nodule or growth in host;	KPNA5_6; importin subunit alpha-6/7; K15042;	NP_172398.1 importin alpha isoform 4 [Arabidopsis thaliana]	430	399	257	246
AT3G53110	no change	-0.7645025061780091	0.13202244939472704	0.4273358354300397	AT3G53110	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008186,ATP-dependent activity, acting on RNA; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009737,response to abscisic acid; GO:0010494,cytoplasmic stress granule; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0051028,mRNA transport;	DDX19, DBP5; ATP-dependent RNA helicase DDX19/DBP5 [EC:3.6.4.13]; K18655;	NP_190879.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	447	419	228	217
AT4G02725	no change	-0.5048941719824525	0.1321466807400555	0.4273358354300397	AT4G02725	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_001078347.1 spindle pole body-associated protein [Arabidopsis thaliana]	151	132	100	78
AT4G30130	no change	0.6810406996453322	0.1325894247931274	0.4282234595158747	AT4G30130	--	GO:0008150,biological_process;	--	NP_001329518.1 DUF630 family protein (DUF630 and DUF632) [Arabidopsis thaliana]	110	94	58	61
AT1G13280	no change	-0.7132340640018535	0.1341076576090493	0.43257793233844166	AT1G13280	--	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009695,jasmonic acid biosynthetic process; GO:0016853,isomerase activity; GO:0046423,allene-oxide cyclase activity;	AOC; allene oxide cyclase [EC:5.3.99.6]; K10525;	NP_172786.1 allene oxide cyclase 4 [Arabidopsis thaliana]	539	461	173	207
AT1G76060	no change	0.9295702347915392	0.13465840885431027	0.433469300051042	AT1G76060	--	GO:0003674,molecular_function; GO:0005759,mitochondrial matrix; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0034551,mitochondrial respiratory chain complex III assembly;	--	NP_177733.2 LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana]	41	24	38	27
AT2G38050	no change	-1.113121027984608	0.13472464296281894	0.433469300051042	AT2G38050	--	GO:0003865,3-oxo-5-alpha-steroid 4-dehydrogenase activity; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0009917,sterol 5-alpha reductase activity; GO:0010268,brassinosteroid homeostasis; GO:0016020,membrane; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016627,oxidoreductase activity, acting on the CH-CH group of donors; GO:0047751,cholestenone 5-alpha-reductase activity; GO:0050213,progesterone 5-alpha-reductase activity; GO:0102728,campest-4-en-3-one,NADPH:steroid 5alpha-reductase activity;	DET2; steroid 5-alpha-reductase [EC:1.3.1.22]; K09591;	NP_181340.1 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Arabidopsis thaliana]	54	37	27	11
AT4G01370	no change	1.079037839832754	0.1349077322646355	0.4335103265321936	AT4G01370	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0002376,immune system process; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0006972,hyperosmotic response; GO:0007112,male meiosis cytokinesis; GO:0009409,response to cold; GO:0009504,cell plate; GO:0009555,pollen development; GO:0009620,response to fungus; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009861,jasmonic acid and ethylene-dependent systemic resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009868,jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0042539,hypotonic salinity response; GO:0043622,cortical microtubule organization; GO:0045087,innate immune response; GO:0071244,cellular response to carbon dioxide; GO:0090333,regulation of stomatal closure; GO:0106310,protein serine kinase activity;	MPK4; mitogen-activated protein kinase 4 [EC:2.7.11.24]; K20600;	NP_192046.1 MAP kinase 4 [Arabidopsis thaliana]	221	202	134	102
AT3G12480	no change	-0.7820561947027738	0.1353455930953416	0.4343688958734482	AT3G12480	NF-YC	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity;	--	NP_187854.2 nuclear factor Y, subunit C11 [Arabidopsis thaliana]	46	42	61	34
AT2G44860	no change	1.0538348768967385	0.1355651052760321	0.4345254318986167	AT2G44860	--	GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0022625,cytosolic large ribosomal subunit; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis;	RP-L24e, RPL24; large subunit ribosomal protein L24e; K02896;	NP_001078059.1 Ribosomal protein L24e family protein [Arabidopsis thaliana]	81	82	90	79
AT5G22090	no change	-0.4998585564597544	0.1359748625206279	0.4352905976289283	AT5G22090	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0010922,positive regulation of phosphatase activity; GO:0019902,phosphatase binding; GO:0042326,negative regulation of phosphorylation; GO:0047485,protein N-terminus binding;	--	NP_001190360.1 FAF-like protein (DUF3049) [Arabidopsis thaliana]	337	259	159	115
AT4G14870	no change	1.0945774236034111	0.1368408257388813	0.43725560580013234	AT4G14870	--	GO:0005515,protein binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0008320,protein transmembrane transporter activity; GO:0009306,protein secretion; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0071806,protein transmembrane transport;	--	NP_567446.1 secE/sec61-gamma protein transport protein [Arabidopsis thaliana]	118	149	152	79
AT2G42220	no change	-0.7203455433876069	0.13704991867531988	0.43725560580013234	AT2G42220	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0016020,membrane;	--	NP_565969.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]	251	219	83	82
AT2G23670	no change	-0.4536379517589912	0.13710411529607294	0.43725560580013234	AT2G23670	--	GO:0003674,molecular_function; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid;	--	NP_565556.1 homolog of Synechocystis YCF37 [Arabidopsis thaliana]	262	253	103	69
AT2G24820	no change	-0.7406469917301033	0.13761377287711188	0.43833172962734634	AT2G24820	--	GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010277,chlorophyllide a oxygenase [overall] activity; GO:0015031,protein transport; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0045036,protein targeting to chloroplast; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	--	OAP11518.1 hypothetical protein AXX17_AT2G20590 [Arabidopsis thaliana]	564	432	247	199
AT5G25630	no change	-0.956804398060056	0.13841502841381112	0.4398679008799981	AT5G25630	--	GO:0005515,protein binding;	--	NP_001190400.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	122	149	86	68
AT2G34490	no change	0.8989852237483138	0.1385097815228711	0.4398679008799981	AT2G34490	--	GO:0000249,C-22 sterol desaturase activity; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016126,sterol biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	CYP710A; sterol 22-desaturase [EC:1.14.19.41]; K09832;	NP_180996.1 cytochrome P450, family 710, subfamily A, polypeptide 2 [Arabidopsis thaliana]	92	72	72	52
AT5G42750	no change	1.7840066900626326	0.13861456051306817	0.4398679008799981	AT5G42750	--	GO:0004860,protein kinase inhibitor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010423,negative regulation of brassinosteroid biosynthetic process; GO:0016020,membrane; GO:0019210,kinase inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046982,protein heterodimerization activity;	BKI1; BRI1 kinase inhibitor 1; K14499;	NP_568610.1 BRI1 kinase inhibitor 1 [Arabidopsis thaliana]	11	3	11	11
AT4G17840	no change	-0.6776963042489195	0.1390373429352196	0.44066007194288154	AT4G17840	--	GO:0004175,endopeptidase activity; GO:0004222,metalloendopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016020,membrane; GO:0016485,protein processing; GO:0071586,CAAX-box protein processing; GO:0080120,CAAX-box protein maturation;	--	NP_567542.1 CAAX protease self-immunity protein [Arabidopsis thaliana]	86	78	46	66
AT5G19760	no change	-0.7879106218137846	0.1402415171784027	0.4436822491881924	AT5G19760	--	GO:0000325,plant-type vacuole; GO:0005310,dicarboxylic acid transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006835,dicarboxylic acid transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015142,tricarboxylic acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035674,tricarboxylic acid transmembrane transport; GO:0055085,transmembrane transport;	--	NP_197477.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	898	827	382	246
AT5G41070	no change	1.222886034796712	0.1403395719436129	0.4436822491881924	AT5G41070	--	GO:0003723,RNA binding; GO:0003725,double-stranded RNA binding; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_198923.2 dsRNA-binding protein 5 [Arabidopsis thaliana]	27	29	26	22
AT1G79380	no change	-0.6249634278458971	0.14167497698476036	0.44734840747669374	AT1G79380	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009611,response to wounding; GO:0009867,jasmonic acid mediated signaling pathway; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0070534,protein K63-linked ubiquitination;	--	NP_565206.1 Ca(2)-dependent phospholipid-binding protein (Copine) family [Arabidopsis thaliana]	111	114	86	76
AT4G37560	no change	-1.564339109966678	0.1428377443789233	0.4504398779627385	AT4G37560	--	GO:0005829,cytosol; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	E3.5.1.49; formamidase [EC:3.5.1.49]; K01455;	NP_568029.1 Acetamidase/Formamidase family protein [Arabidopsis thaliana]	20	25	5	4
AT2G01570	no change	1.0309480669778317	0.1430178831937371	0.4504398779627385	AT2G01570	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009938,negative regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010187,negative regulation of seed germination; GO:0010218,response to far red light; GO:0010628,positive regulation of gene expression; GO:0033206,meiotic cytokinesis; GO:0042176,regulation of protein catabolic process; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:1900033,negative regulation of trichome patterning; GO:1905614,negative regulation of developmental vegetative growth; GO:1905622,negative regulation of leaf development; GO:1990841,promoter-specific chromatin binding; GO:2000033,regulation of seed dormancy process; GO:2000377,regulation of reactive oxygen species metabolic process;	DELLA; DELLA protein; K14494;	NP_178266.1 GRAS family transcription factor family protein [Arabidopsis thaliana]	312	359	216	199
AT5G58310	no change	-0.9622843985550809	0.14318501425220254	0.4504398779627385	AT5G58310	--	GO:0005575,cellular_component; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_200639.1 methyl esterase 18 [Arabidopsis thaliana]	110	70	36	11
AT5G25770	no change	0.7094353037274743	0.1438553918787734	0.45199008929812146	AT5G25770	--	GO:0003674,molecular_function;	--	NP_974835.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	57	43	69	42
AT4G18740	no change	-1.6148792492381876	0.1444676651020162	0.45322992807058793	AT4G18740	--	GO:0003674,molecular_function; GO:0006353,DNA-templated transcription termination;	--	NP_974569.1 Rho termination factor [Arabidopsis thaliana]	23	10	4	14
AT1G51590	no change	-0.8467922032196897	0.14460616958480055	0.45322992807058793	AT1G51590	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0004559,alpha-mannosidase activity; GO:0004571,mannosyl-oligosaccharide 1,2-alpha-mannosidase activity; GO:0005509,calcium ion binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006486,protein glycosylation; GO:0006491,N-glycan processing; GO:0008152,metabolic process; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0046872,metal ion binding;	MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase [EC:3.2.1.113]; K01230;	NP_001031171.1 alpha-mannosidase 1 [Arabidopsis thaliana]	105	90	81	69
AT2G39270	no change	0.8071664916054608	0.14508641576886608	0.45417580336010355	AT2G39270	--	GO:0000166,nucleotide binding; GO:0004017,adenylate kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006139,nucleobase-containing compound metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016776,phosphotransferase activity, phosphate group as acceptor; GO:0019205,nucleobase-containing compound kinase activity; GO:0046940,nucleoside monophosphate phosphorylation;	adk, AK; adenylate kinase [EC:2.7.4.3]; K00939;	NP_850314.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	52	53	62	39
AT3G17800	no change	0.7108425677330228	0.14576124954696762	0.4550120717233755	AT3G17800	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B;	--	NP_566588.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]	528	516	234	195
AT1G49730	no change	0.8335745708456486	0.14580807996747366	0.4550120717233755	AT1G49730	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_849788.2 Protein kinase superfamily protein [Arabidopsis thaliana]	48	41	43	24
AT4G21770	no change	-0.9879428391717484	0.14599130033334204	0.4550120717233755	AT4G21770	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_193908.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	65	25	35	25
AT5G26960	no change	0.6178645825707259	0.14606870828997948	0.4550120717233755	AT5G26960	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_198048.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	95	85	63	44
AT1G77400	no change	1.6266021466717024	0.14769842683990173	0.4595262791045842	AT1G77400	--	--	--	NP_177864.1 extensin-like protein [Arabidopsis thaliana]	15	13	5	11
AT2G46280	no change	1.0665869752486152	0.14834937846825066	0.4604364072915712	AT2G46280	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	EIF3I; translation initiation factor 3 subunit I; K03246;	NP_182151.1 TGF-beta receptor interacting protein 1 [Arabidopsis thaliana]	473	437	554	438
AT5G06280	no change	0.7291498226716868	0.14835279134738247	0.4604364072915712	AT5G06280	--	GO:0008150,biological_process;	--	NP_196246.1 hypothetical protein AT5G06280 [Arabidopsis thaliana]	62	53	41	57
AT3G61470	no change	0.8781632405811255	0.14902585620285866	0.46196200248023783	AT3G61470	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA2; light-harvesting complex I chlorophyll a/b binding protein 2; K08908;	NP_191706.2 photosystem I light harvesting complex protein [Arabidopsis thaliana]	2075	1979	1196	957
AT1G49820	no change	0.7442890980106753	0.1494356819359146	0.4626688692541394	AT1G49820	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009086,methionine biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019509,L-methionine salvage from methylthioadenosine; GO:0042802,identical protein binding; GO:0046522,S-methyl-5-thioribose kinase activity;	mtnK; 5-methylthioribose kinase [EC:2.7.1.100]; K00899;	NP_564555.1 S-methyl-5-thioribose kinase [Arabidopsis thaliana]	65	57	63	78
AT3G60220	no change	0.8452211998792905	0.14983120018211105	0.46332977456072005	AT3G60220	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031625,ubiquitin protein ligase binding; GO:0046872,metal ion binding;	--	NP_191581.1 TOXICOS EN LEVADURA 4 [Arabidopsis thaliana]	41	40	32	31
AT3G01500	no change	1.1556310502074147	0.1504507660603742	0.4643943448883394	AT3G01500	--	GO:0003729,mRNA binding; GO:0004089,carbonate dehydratase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010037,response to carbon dioxide; GO:0010119,regulation of stomatal movement; GO:0010319,stromule; GO:0015976,carbon utilization; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016829,lyase activity; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:2000122,negative regulation of stomatal complex development;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_186799.2 carbonic anhydrase 1 [Arabidopsis thaliana]	2216	2082	1401	1284
AT1G53750	no change	0.3605220334912005	0.15054040649622005	0.4643943448883394	AT1G53750	--	GO:0000166,nucleotide binding; GO:0000502,proteasome complex; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008540,proteasome regulatory particle, base subcomplex; GO:0016887,ATP hydrolysis activity; GO:0030163,protein catabolic process; GO:0036402,proteasome-activating activity; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:1901800,positive regulation of proteasomal protein catabolic process;	PSMC2, RPT1; 26S proteasome regulatory subunit T1; K03061;	NP_175778.1 regulatory particle triple-A 1A [Arabidopsis thaliana]	775	760	740	476
AT1G44790	no change	-1.0584891200970228	0.1508353114903987	0.4647407599794971	AT1G44790	--	GO:0003839,gamma-glutamylcyclotransferase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006751,glutathione catabolic process; GO:0016829,lyase activity;	GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9]; K22596;	NP_564490.1 ChaC-like family protein [Arabidopsis thaliana]	52	24	16	14
AT3G47800	no change	-0.5064659686524005	0.15188441576040268	0.4673370676457578	AT3G47800	--	GO:0003824,catalytic activity; GO:0004034,aldose 1-epimerase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0016853,isomerase activity; GO:0019318,hexose metabolic process; GO:0030246,carbohydrate binding; GO:0033499,galactose catabolic process via UDP-galactose;	galM, GALM; aldose 1-epimerase [EC:5.1.3.3]; K01785;	NP_190364.1 Galactose mutarotase-like superfamily protein [Arabidopsis thaliana]	201	154	122	101
AT5G53120	no change	-0.5483605089956631	0.15230448705692168	0.4673370676457578	AT5G53120	--	GO:0003824,catalytic activity; GO:0004766,spermidine synthase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006595,polyamine metabolic process; GO:0006596,polyamine biosynthetic process; GO:0006597,spermine biosynthetic process; GO:0016740,transferase activity; GO:0016768,spermine synthase activity; GO:0042742,defense response to bacterium;	speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16]; K00797;	NP_001190527.1 spermidine synthase 3 [Arabidopsis thaliana]	381	291	199	211
AT5G03240	no change	1.1771473294957389	0.1524324321625555	0.4673370676457578	AT5G03240	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010224,response to UV-B; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	NP_001031824.1 polyubiquitin 3 [Arabidopsis thaliana]	1923	1937	1230	974
AT4G29360	no change	-0.5902756952445567	0.15258429867203308	0.4673370676457578	AT4G29360	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_849556.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	150	128	139	61
AT3G48150	no change	-0.9633560737090824	0.15259611128236727	0.4673370676457578	AT3G48150	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005680,anaphase-promoting complex; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0007091,metaphase/anaphase transition of mitotic cell cycle; GO:0016567,protein ubiquitination; GO:0030071,regulation of mitotic metaphase/anaphase transition; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0031347,regulation of defense response; GO:0045842,positive regulation of mitotic metaphase/anaphase transition; GO:0051301,cell division;	APC8, CDC23; anaphase-promoting complex subunit 8; K03355;	NP_190398.1 anaphase-promoting complex subunit 8 [Arabidopsis thaliana]	48	26	21	25
AT2G43180	no change	0.8488064870619558	0.1528269978404596	0.4674816219999636	AT2G43180	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0043231,intracellular membrane-bounded organelle;	--	NP_850388.1 Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]	46	28	38	30
AT4G17730	no change	0.8078641231636814	0.15395334075159292	0.4703616473142905	AT4G17730	--	GO:0000149,SNARE binding; GO:0000325,plant-type vacuole; GO:0005484,SNAP receptor activity; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0006906,vesicle fusion; GO:0009597,detection of virus; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0019048,modulation by virus of host process; GO:0031201,SNARE complex; GO:0048278,vesicle docking; GO:0061025,membrane fusion; GO:0110165,cellular anatomical entity;	--	NP_567537.1 syntaxin of plants 23 [Arabidopsis thaliana]	114	99	77	114
AT4G39200	no change	-0.8681299637508371	0.15450473028378933	0.4713126546219247	AT4G39200	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-S25e, RPS25; small subunit ribosomal protein S25e; K02975;	NP_195631.1 Ribosomal protein S25 family protein [Arabidopsis thaliana]	216	260	206	176
AT5G58530	no change	0.8546862876651726	0.15463499670306763	0.4713126546219247	AT5G58530	--	GO:0003729,mRNA binding;	--	NP_200661.1 Glutaredoxin family protein [Arabidopsis thaliana]	46	31	32	30
AT5G54300	no change	1.038259899402302	0.15519091754714648	0.47176424179983034	AT5G54300	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_200241.1 cotton fiber-like protein (DUF761) [Arabidopsis thaliana]	23	25	62	18
AT5G11890	no change	0.5805430980868573	0.1552442268629252	0.47176424179983034	AT5G11890	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_196750.1 harpin-induced protein [Arabidopsis thaliana]	202	117	94	142
AT1G17140	no change	-0.8090822806899514	0.1554960272141	0.47176424179983034	AT1G17140	--	GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0090404,pollen tube tip; GO:2000012,regulation of auxin polar transport;	--	NP_564015.1 interactor of constitutive active rops 1 [Arabidopsis thaliana]	219	193	140	108
AT1G69160	no change	1.1713521506285651	0.15552463609825448	0.47176424179983034	AT1G69160	--	GO:0005886,plasma membrane; GO:0009734,auxin-activated signaling pathway; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0016020,membrane; GO:0060918,auxin transport;	--	NP_564952.1 suppressor [Arabidopsis thaliana]	20	25	14	17
AT5G06050	no change	-0.9220501100305132	0.15616691691699744	0.4724278225926436	AT5G06050	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_196224.1 Putative methyltransferase family protein [Arabidopsis thaliana]	167	170	128	99
AT5G63020	no change	-0.926864621253106	0.1563302847564494	0.4724278225926436	AT5G63020	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0043531,ADP binding;	--	NP_201107.2 Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]	41	35	21	24
AT3G57190	no change	-1.8065932294473088	0.1566318027018773	0.4724278225926436	AT3G57190	--	GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0003747,translation release factor activity; GO:0005515,protein binding; GO:0006415,translational termination; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0043488,regulation of mRNA stability; GO:0043565,sequence-specific DNA binding;	--	NP_191278.2 peptide chain release factor [Arabidopsis thaliana]	24	10	7	1
AT5G17380	no change	-0.767736902816754	0.156969560477538	0.4724278225926436	AT5G17380	--	GO:0000287,magnesium ion binding; GO:0001561,fatty acid alpha-oxidation; GO:0003824,catalytic activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0009536,plastid; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0030976,thiamine pyrophosphate binding; GO:0046872,metal ion binding;	HACL1; 2-hydroxyacyl-CoA lyase 1 [EC:4.1.-.-]; K12261;	NP_197240.1 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [Arabidopsis thaliana]	478	414	220	176
AT1G77280	no change	-1.1341312851355294	0.15704767069062578	0.4724278225926436	AT1G77280	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity;	--	NP_001319394.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana]	51	47	9	12
AT3G21180	no change	-0.9633247653086237	0.15725465424599017	0.4724278225926436	AT3G21180	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009555,pollen development; GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_188755.2 autoinhibited Ca(2+)-ATPase 9 [Arabidopsis thaliana]	140	123	60	27
AT1G68725	no change	-1.3101075882619355	0.15733643311997453	0.4724278225926436	AT1G68725	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_177041.3 arabinogalactan protein 19 [Arabidopsis thaliana]	33	32	18	3
AT3G53540	no change	-0.6884173701141343	0.15756034472005728	0.4724278225926436	AT3G53540	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_190922.3 afadin [Arabidopsis thaliana]	77	64	42	34
AT5G52850	no change	-1.1551718026686206	0.15763411972171132	0.4724278225926436	AT5G52850	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0043231,intracellular membrane-bounded organelle;	--	NP_200097.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	26	28	13	12
AT3G25590	no change	-1.250994270636408	0.15782148746127753	0.4724278225926436	AT3G25590	--	GO:0003674,molecular_function;	--	NP_189187.2 micronuclear linker histone polyprotein-like protein [Arabidopsis thaliana]	12	38	19	14
AT5G03200	no change	0.9789468002795588	0.15783552552028068	0.4724278225926436	AT5G03200	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_195940.1 RING/U-box superfamily protein [Arabidopsis thaliana]	47	46	25	26
AT1G21770	no change	0.47230838663756414	0.1580914135531394	0.4724278225926436	AT1G21770	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol;	K06975; uncharacterized protein; K06975;	NP_564151.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	149	165	177	86
AT1G05805	no change	-0.8368206746458684	0.15815658343769445	0.4724278225926436	AT1G05805	bHLH	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009416,response to light stimulus; GO:0010119,regulation of stomatal movement; GO:0046983,protein dimerization activity; GO:1902456,regulation of stomatal opening; GO:1903286,regulation of potassium ion import;	--	NP_563749.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	139	82	54	46
AT5G58330	no change	-0.8345815019233012	0.1604903372358496	0.4788369381773004	AT5G58330	--	GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0006099,tricarboxylic acid cycle; GO:0006107,oxaloacetate metabolic process; GO:0006108,malate metabolic process; GO:0006734,NADH metabolic process; GO:0008746,NAD(P)+ transhydrogenase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016615,malate dehydrogenase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0030060,L-malate dehydrogenase activity; GO:0046554,malate dehydrogenase (NADP+) activity; GO:0048046,apoplast; GO:0051775,response to redox state;	E1.1.1.82; malate dehydrogenase (NADP+) [EC:1.1.1.82]; K00051;	NP_568875.2 lactate/malate dehydrogenase family protein [Arabidopsis thaliana]	1677	1509	777	673
AT1G56070	no change	-0.6999437681329557	0.16079892819016223	0.4791958691381299	AT1G56070	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005507,copper ion binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009631,cold acclimation; GO:0043022,ribosome binding; GO:1990904,ribonucleoprotein complex;	EEF2; elongation factor 2; K03234;	NP_001321033.1 Ribosomal protein S5/Elongation factor G/III/V family protein [Arabidopsis thaliana]	17669	16793	14451	11142
AT5G57560	no change	-1.0388088613058637	0.1612375527760025	0.4799410196665805	AT5G57560	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005618,cell wall; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0006073,cellular glucan metabolic process; GO:0008152,metabolic process; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009612,response to mechanical stimulus; GO:0009664,plant-type cell wall organization; GO:0009733,response to auxin; GO:0009741,response to brassinosteroid; GO:0010411,xyloglucan metabolic process; GO:0016740,transferase activity; GO:0016762,xyloglucan:xyloglucosyl transferase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030247,polysaccharide binding; GO:0042546,cell wall biogenesis; GO:0048046,apoplast; GO:0071456,cellular response to hypoxia; GO:0071555,cell wall organization; GO:0099503,secretory vesicle;	TCH4; xyloglucan:xyloglucosyl transferase TCH4 [EC:2.4.1.207]; K14504;	NP_200564.1 Xyloglucan endotransglucosylase/hydrolase family protein [Arabidopsis thaliana]	38	36	21	11
AT3G61360	no change	-1.197261597709291	0.16175301693223854	0.4809128832856858	AT3G61360	--	GO:0000398,mRNA splicing, via spliceosome; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_191695.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	36	22	18	6
AT5G49660	no change	0.9014216252734552	0.16239131948558308	0.4822472673171633	AT5G49660	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010051,xylem and phloem pattern formation; GO:0010311,lateral root formation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0017046,peptide hormone binding; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0042277,peptide binding; GO:0048437,floral organ development; GO:0048831,regulation of shoot system development; GO:0051428,peptide hormone receptor binding; GO:0080113,regulation of seed growth; GO:0090548,response to nitrate starvation; GO:1901141,regulation of lignin biosynthetic process; GO:1901333,positive regulation of lateral root development; GO:1902025,nitrate import; GO:2000023,regulation of lateral root development; GO:2000280,regulation of root development; GO:2000652,regulation of secondary cell wall biogenesis;	--	NP_199777.1 Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	128	129	84	72
AT4G02520	no change	-0.9953838528779446	0.1626919749435856	0.4825770119247382	AT4G02520	--	GO:0000325,plant-type vacuole; GO:0002239,response to oomycetes; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0009734,auxin-activated signaling pathway; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0019904,protein domain specific binding; GO:0042221,response to chemical; GO:0043231,intracellular membrane-bounded organelle; GO:0043295,glutathione binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding; GO:2001147,camalexin binding; GO:2001227,quercitrin binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_192161.1 glutathione S-transferase PHI 2 [Arabidopsis thaliana]	50	54	27	6
AT3G63440	no change	1.020858658163622	0.16487534393911157	0.4884839933935261	AT3G63440	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009690,cytokinin metabolic process; GO:0010103,stomatal complex morphogenesis; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding;	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279;	NP_191903.3 cytokinin oxidase/dehydrogenase 6 [Arabidopsis thaliana]	45	21	21	16
AT4G29510	no change	0.6912350747534672	0.1653513796490191	0.48884872415337793	AT4G29510	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008168,methyltransferase activity; GO:0016274,protein-arginine N-methyltransferase activity; GO:0016740,transferase activity; GO:0018216,peptidyl-arginine methylation; GO:0032259,methylation; GO:0035242,protein-arginine omega-N asymmetric methyltransferase activity;	PRMT1; type I protein arginine methyltransferase [EC:2.1.1.319]; K11434;	NP_194680.1 arginine methyltransferase 11 [Arabidopsis thaliana]	213	197	268	154
AT1G72275	no change	2.0410299613079914	0.16559296154379627	0.48884872415337793	AT1G72275	--	GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0035098,ESC/E(Z) complex; GO:0035102,PRC1 complex; GO:0046872,metal ion binding;	--	NP_001320443.1 LOW protein: nuclease-like protein [Arabidopsis thaliana]	13	7	10	1
AT1G29380	no change	1.5016798638140685	0.1656678958710677	0.48884872415337793	AT1G29380	--	GO:0008150,biological_process;	--	NP_001322587.1 Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]	13	11	18	5
AT4G13340	no change	0.6322675149381558	0.16576677758128297	0.48884872415337793	AT4G13340	--	GO:0005199,structural constituent of cell wall; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0042277,peptide binding; GO:0071555,cell wall organization; GO:0099503,secretory vesicle;	--	NP_193070.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	112	106	81	63
AT5G45930	no change	-0.6593328392523841	0.1673066357948847	0.49281873622451566	AT5G45930	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010007,magnesium chelatase complex; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016851,magnesium chelatase activity; GO:0016874,ligase activity; GO:0016887,ATP hydrolysis activity;	chlI, bchI; magnesium chelatase subunit I [EC:6.6.1.1]; K03405;	NP_199405.2 magnesium chelatase i2 [Arabidopsis thaliana]	223	261	150	133
AT5G55540	no change	0.8592802437475076	0.16801958606342812	0.49434664338893014	AT5G55540	--	GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0009734,auxin-activated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009926,auxin polar transport; GO:0009933,meristem structural organization; GO:0009956,radial pattern formation; GO:0009965,leaf morphogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0010540,basipetal auxin transport; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_200365.1 tornado 1 [Arabidopsis thaliana]	129	148	108	75
AT5G67290	no change	1.1639609214676518	0.16843662375919377	0.4944344076795696	AT5G67290	--	GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity;	--	NP_201530.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]	74	41	37	36
AT4G26590	no change	0.9959217008324046	0.16843796913877676	0.4944344076795696	AT4G26590	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_194389.1 oligopeptide transporter 5 [Arabidopsis thaliana]	24	45	17	34
AT2G43350	no change	-1.1561851795565783	0.1686974550274839	0.494625602586344	AT2G43350	--	GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0016491,oxidoreductase activity; GO:0042542,response to hydrogen peroxide; GO:0042631,cellular response to water deprivation; GO:0098869,cellular oxidant detoxification; GO:0110165,cellular anatomical entity;	gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9]; K00432;	NP_001189742.1 glutathione peroxidase 3 [Arabidopsis thaliana]	33	27	10	9
AT5G07360	no change	-0.6143365380443981	0.16956267382574097	0.49645762181340286	AT5G07360	--	GO:0003824,catalytic activity; GO:0008150,biological_process;	--	NP_001331984.1 Amidase family protein [Arabidopsis thaliana]	72	137	74	59
AT3G09070	no change	-0.9783746899880336	0.1697124286749157	0.49645762181340286	AT3G09070	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0010088,phloem development; GO:0010233,phloem transport; GO:0010588,cotyledon vascular tissue pattern formation; GO:0016020,membrane; GO:0016324,apical plasma membrane; GO:0022622,root system development; GO:0030154,cell differentiation; GO:2000280,regulation of root development;	--	NP_187519.1 LOW protein: UPF0503-like protein, putative (DUF740) [Arabidopsis thaliana]	106	76	61	27
AT5G62050	no change	0.8802797221770131	0.17068381383250492	0.4978648443626728	AT5G62050	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0032977,membrane insertase activity; GO:0032979,protein insertion into mitochondrial inner membrane from matrix; GO:0051205,protein insertion into membrane; GO:0090150,establishment of protein localization to membrane;	yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase; K03217;	NP_201011.1 inner membrane OXA1-like protein [Arabidopsis thaliana]	66	70	79	35
AT5G54080	no change	0.3877830247077121	0.1707263734707188	0.4978648443626728	AT5G54080	--	GO:0004411,homogentisate 1,2-dioxygenase activity; GO:0006520,cellular amino acid metabolic process; GO:0006559,L-phenylalanine catabolic process; GO:0006570,tyrosine metabolic process; GO:0006572,tyrosine catabolic process; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:1902000,homogentisate catabolic process;	HGD, hmgA; homogentisate 1,2-dioxygenase [EC:1.13.11.5]; K00451;	NP_200219.1 homogentisate 1,2-dioxygenase [Arabidopsis thaliana]	348	287	326	240
AT5G67310	no change	-1.5442900616922657	0.17080815437248908	0.4978648443626728	AT5G67310	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_201532.2 cytochrome P450, family 81, subfamily G, polypeptide 1 [Arabidopsis thaliana]	13	11	13	5
AT1G72180	no change	0.6836940947375165	0.1710300531785484	0.4978648443626728	AT1G72180	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006970,response to osmotic stress; GO:0010555,response to mannitol; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0017046,peptide hormone binding; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0042277,peptide binding; GO:0048831,regulation of shoot system development; GO:0090548,response to nitrate starvation; GO:1902025,nitrate import; GO:2000280,regulation of root development;	--	NP_177363.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	238	202	139	146
AT1G65010	no change	1.0588198465974443	0.17130145583159284	0.4978648443626728	AT1G65010	--	GO:0005875,microtubule associated complex; GO:0007131,reciprocal meiotic recombination; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_176681.4 WEB family protein (DUF827) [Arabidopsis thaliana]	545	475	326	316
AT3G59940	no change	0.528433100250755	0.17154826378933677	0.4978648443626728	AT3G59940	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0016567,protein ubiquitination; GO:0080037,negative regulation of cytokinin-activated signaling pathway; GO:2000762,regulation of phenylpropanoid metabolic process;	--	NP_191553.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	203	163	116	117
AT2G30260	no change	0.7410585346715415	0.17177169846690635	0.4978648443626728	AT2G30260	--	GO:0000354,cis assembly of pre-catalytic spliceosome; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005681,spliceosomal complex; GO:0005686,U2 snRNP; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0015030,Cajal body; GO:1990904,ribonucleoprotein complex;	SNRPB2; U2 small nuclear ribonucleoprotein B''; K11094;	NP_180585.1 U2 small nuclear ribonucleoprotein B [Arabidopsis thaliana]	34	82	55	65
AT2G16600	no change	-0.6619437874838674	0.17193812366215103	0.4978648443626728	AT2G16600	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0007165,signal transduction; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_001318231.1 rotamase CYP 3 [Arabidopsis thaliana]	10897	9006	7259	6079
AT3G63380	no change	0.9570881966272936	0.1720694072050393	0.4978648443626728	AT3G63380	--	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity;	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537;	NP_191897.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]	39	20	26	21
AT1G08230	no change	1.1867724449884811	0.17239478163211663	0.4978648443626728	AT1G08230	--	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0015171,amino acid transmembrane transporter activity; GO:0015185,gamma-aminobutyric acid transmembrane transporter activity; GO:0015812,gamma-aminobutyric acid transport; GO:0016020,membrane;	--	NP_001320802.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	19	15	18	23
AT3G22970	no change	0.7453101733664695	0.17255566088736518	0.4978648443626728	AT3G22970	--	--	--	NP_188937.1 hypothetical protein (DUF506) [Arabidopsis thaliana]	195	133	221	176
AT4G33100	no change	1.557929453204503	0.17279824316141906	0.4978648443626728	AT4G33100	--	GO:0005634,nucleus; GO:0005758,mitochondrial intermembrane space; GO:0008150,biological_process; GO:0045332,phospholipid translocation; GO:0120009,intermembrane lipid transfer; GO:1990050,phosphatidic acid transfer activity;	--	NP_195036.1 protein phosphatase [Arabidopsis thaliana]	10	5	6	21
AT2G26230	no change	-0.6477335960196271	0.17307462122403797	0.4978648443626728	AT2G26230	--	GO:0004846,urate oxidase activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006144,purine nucleobase metabolic process; GO:0006145,purine nucleobase catabolic process; GO:0007031,peroxisome organization; GO:0016491,oxidoreductase activity; GO:0019628,urate catabolic process;	uaZ; urate oxidase [EC:1.7.3.3]; K00365;	NP_180191.1 uricase / urate oxidase / nodulin 35 [Arabidopsis thaliana]	254	207	151	141
AT1G48160	no change	-0.6658641432116017	0.1730883891466873	0.4978648443626728	AT1G48160	--	GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0006617,SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition; GO:0008312,7S RNA binding; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP19; signal recognition particle subunit SRP19; K03105;	NP_001323146.1 signal recognition particle 19 kDa protein, putative / SRP19 [Arabidopsis thaliana]	65	63	44	40
AT1G55265	no change	0.838241407885528	0.17319555339577675	0.4978648443626728	AT1G55265	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0099503,secretory vesicle;	--	NP_564683.1 DUF538 family protein, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]	161	157	121	114
AT1G71130	no change	0.9417302298271792	0.17332347823392066	0.4978648443626728	AT1G71130	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway;	--	NP_565012.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	40	27	29	15
AT3G10200	no change	-1.1372383992979138	0.17370798036319493	0.49840677567568326	AT3G10200	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_187631.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	23	46	20	6
AT3G56130	no change	0.4164867643080137	0.1741296943565716	0.4987508829597681	AT3G56130	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0045717,negative regulation of fatty acid biosynthetic process;	--	NP_567035.1 biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana]	350	317	216	182
AT2G29450	no change	-0.5186593859946482	0.1745405537672598	0.4987508829597681	AT2G29450	--	GO:0004364,glutathione transferase activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006749,glutathione metabolic process; GO:0006979,response to oxidative stress; GO:0009407,toxin catabolic process; GO:0009506,plasmodesma; GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0043295,glutathione binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_180506.1 glutathione S-transferase tau 5 [Arabidopsis thaliana]	187	198	174	123
AT3G60820	no change	0.4845766821061339	0.1746118881051205	0.4987508829597681	AT3G60820	--	GO:0000502,proteasome complex; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005839,proteasome core complex; GO:0005886,plasma membrane; GO:0010498,proteasomal protein catabolic process; GO:0019774,proteasome core complex, beta-subunit complex; GO:0050832,defense response to fungus; GO:0051603,proteolysis involved in protein catabolic process;	PSMB1; 20S proteasome subunit beta 6 [EC:3.4.25.1]; K02732;	NP_001190146.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [Arabidopsis thaliana]	698	487	404	357
AT5G10600	no change	1.762971124925507	0.17475905437558636	0.4987508829597681	AT5G10600	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_196622.2 cytochrome P450, family 81, subfamily K, polypeptide 2 [Arabidopsis thaliana]	10	17	6	3
AT1G13450	no change	0.990936875803702	0.17480777508845308	0.4987508829597681	AT1G13450	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0042802,identical protein binding; GO:0043565,sequence-specific DNA binding;	--	NP_172802.2 Homeodomain-like superfamily protein [Arabidopsis thaliana]	19	32	30	18
AT1G27070	no change	-1.4211893416250714	0.17551446245861052	0.5002063907695004	AT1G27070	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010581,regulation of starch biosynthetic process; GO:0019252,starch biosynthetic process; GO:0030247,polysaccharide binding; GO:2001071,maltoheptaose binding;	--	NP_174027.3 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]	13	21	10	6
AT5G20350	no change	-0.7302608908731028	0.17617371756136788	0.5015236143106054	AT5G20350	--	GO:0000035,acyl binding; GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0009932,cell tip growth; GO:0016020,membrane; GO:0016409,palmitoyltransferase activity; GO:0016417,S-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0018345,protein palmitoylation; GO:0019706,protein-cysteine S-palmitoyltransferase activity; GO:0030659,cytoplasmic vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:2000652,regulation of secondary cell wall biogenesis; GO:2001006,regulation of cellulose biosynthetic process;	--	NP_197535.2 Ankyrin repeat family protein with DHHC zinc finger domain-containing protein [Arabidopsis thaliana]	210	250	139	87
AT5G12120	no change	0.4659752438361728	0.17655048334252796	0.5017451761388813	AT5G12120	--	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0006414,translational elongation;	--	NP_196773.1 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	355	284	219	190
AT1G06800	no change	-0.9780062239112164	0.1768861438060968	0.5017451761388813	AT1G06800	--	GO:0004620,phospholipase activity; GO:0004806,triglyceride lipase activity; GO:0006629,lipid metabolic process; GO:0008970,phospholipase A1 activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0047714,galactolipase activity;	--	NP_849603.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	44	24	20	15
AT1G06680	no change	0.9325859549367728	0.1770068823830254	0.5017451761388813	AT1G06680	--	GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005576,extracellular region; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0019684,photosynthesis, light reaction; GO:0019898,extrinsic component of membrane; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0048046,apoplast; GO:1901149,salicylic acid binding;	psbP; photosystem II oxygen-evolving enhancer protein 2; K02717;	NP_172153.1 photosystem II subunit P-1 [Arabidopsis thaliana]	5038	4532	2627	1982
AT2G17972	no change	0.9253220423458908	0.1770401446651141	0.5017451761388813	AT2G17972	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_565430.1 transmembrane protein [Arabidopsis thaliana]	22	28	31	23
AT1G76690	no change	-1.0121909659254396	0.1793942886017423	0.5078514621706721	AT1G76690	--	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009611,response to wounding; GO:0009695,jasmonic acid biosynthetic process; GO:0010181,FMN binding; GO:0016491,oxidoreductase activity; GO:0016629,12-oxophytodienoate reductase activity; GO:0031408,oxylipin biosynthetic process;	OPR; 12-oxophytodienoic acid reductase [EC:1.3.1.42]; K05894;	NP_177795.1 12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	37	28	16	14
AT1G74800	no change	-0.7863917225428763	0.17965385548450558	0.5080211802311853	AT1G74800	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008378,galactosyltransferase activity; GO:0010405,arabinogalactan protein metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0018258,protein O-linked glycosylation via hydroxyproline; GO:0030246,carbohydrate binding; GO:0034645,cellular macromolecule biosynthetic process; GO:0044238,primary metabolic process; GO:0080147,root hair cell development; GO:1901137,carbohydrate derivative biosynthetic process; GO:1990714,hydroxyproline O-galactosyltransferase activity;	--	NP_177618.2 Galactosyltransferase family protein [Arabidopsis thaliana]	86	81	78	58
AT1G06260	no change	-0.6403925300014874	0.18013637821909226	0.5088202914179687	AT1G06260	--	GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process;	--	NP_563764.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	468	511	154	113
AT3G62650	no change	-0.6990024565984525	0.18080864081950895	0.5101529832435148	AT3G62650	--	--	--	NP_191824.1 hypothetical protein AT3G62650 [Arabidopsis thaliana]	435	388	397	281
AT1G32630	no change	1.7016953332418616	0.1810759365399288	0.5103413715328005	AT1G32630	--	GO:0003674,molecular_function;	--	NP_001322452.1 FAM50A-like protein [Arabidopsis thaliana]	5	7	9	9
AT5G60020	no change	0.7890807894894518	0.18202367283838516	0.5124449639089494	AT5G60020	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009698,phenylpropanoid metabolic process; GO:0009809,lignin biosynthetic process; GO:0016491,oxidoreductase activity; GO:0046274,lignin catabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0052716,hydroquinone:oxygen oxidoreductase activity;	E1.10.3.2; laccase [EC:1.10.3.2]; K05909;	NP_200810.1 laccase 17 [Arabidopsis thaliana]	278	218	201	147
AT5G45020	no change	-1.021980427292366	0.1822560185620454	0.5125321184976857	AT5G45020	--	GO:0004364,glutathione transferase activity; GO:0005737,cytoplasm; GO:0042221,response to chemical;	ECM4, yqjG; glutathionyl-hydroquinone reductase [EC:1.8.5.7]; K07393;	NP_001190472.1 Glutathione S-transferase family protein [Arabidopsis thaliana]	32	30	17	11
AT1G74060	no change	0.5767258529898465	0.1826914942375636	0.5131896830403966	AT1G74060	--	GO:0000027,ribosomal large subunit assembly; GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L6e, RPL6; large subunit ribosomal protein L6e; K02934;	NP_177546.1 Ribosomal protein L6 family protein [Arabidopsis thaliana]	1364	1281	1266	1128
AT1G13330	no change	-2.0216342183974447	0.18327756069456735	0.5137985009943569	AT1G13330	--	GO:0000709,meiotic joint molecule formation; GO:0000794,condensed nuclear chromosome; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0006310,DNA recombination; GO:0007129,homologous chromosome pairing at meiosis; GO:0007131,reciprocal meiotic recombination; GO:0010774,meiotic strand invasion involved in reciprocal meiotic recombination; GO:0050790,regulation of catalytic activity; GO:0051026,chiasma assembly; GO:0051321,meiotic cell cycle; GO:0090304,nucleic acid metabolic process; GO:0120230,recombinase activator activity; GO:0120231,DNA recombinase auxiliary factor complex;	--	NP_172791.1 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [Arabidopsis thaliana]	12	7	8	1
AT4G18205	no change	1.8769789888530148	0.18331199956891003	0.5137985009943569	AT4G18205	--	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport;	--	NP_001031664.1 Nucleotide-sugar transporter family protein [Arabidopsis thaliana]	5	6	3	13
AT4G17600	no change	-0.9169606322952522	0.18375628390535811	0.514477164509501	AT4G17600	--	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0009503,thylakoid light-harvesting complex; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019899,enzyme binding; GO:0042651,thylakoid membrane; GO:0042802,identical protein binding; GO:0043495,protein-membrane adaptor activity; GO:1902326,positive regulation of chlorophyll biosynthetic process; GO:1904964,positive regulation of phytol biosynthetic process; GO:1904966,positive regulation of vitamin E biosynthetic process;	--	NP_567532.1 Chlorophyll A-B binding family protein [Arabidopsis thaliana]	297	226	102	91
AT2G04280	no change	-0.7779165971321351	0.18403505494545008	0.5146914448749125	AT2G04280	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0016020,membrane;	--	NP_565310.1 calcium ion-binding protein [Arabidopsis thaliana]	557	469	205	191
AT3G28150	no change	0.8286187548875201	0.18516367734174655	0.5172794279195883	AT3G28150	--	GO:0005794,Golgi apparatus; GO:0010411,xyloglucan metabolic process; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	AXY4, AXY4L; xyloglucan O-acetyltransferase; K23877;	NP_189454.1 TRICHOME BIREFRINGENCE-LIKE 22 [Arabidopsis thaliana]	46	25	29	35
AT1G10070	no change	-1.150283588262532	0.1854588973684864	0.5175360677662257	AT1G10070	--	GO:0003824,catalytic activity; GO:0004084,branched-chain-amino-acid transaminase activity; GO:0005737,cytoplasm; GO:0008483,transaminase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009081,branched-chain amino acid metabolic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009097,isoleucine biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009099,valine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0050048,L-leucine:2-oxoglutarate aminotransferase activity; GO:0052654,L-leucine transaminase activity; GO:0052655,L-valine transaminase activity; GO:0052656,L-isoleucine transaminase activity; GO:0071669,plant-type cell wall organization or biogenesis;	E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42]; K00826;	NP_001031015.1 branched-chain amino acid transaminase 2 [Arabidopsis thaliana]	32	30	6	12
AT1G36390	no change	-0.7631491946794284	0.1864294542444828	0.5193923289888593	AT1G36390	--	GO:0000774,adenyl-nucleotide exchange factor activity; GO:0001405,PAM complex, Tim23 associated import motor; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0030150,protein import into mitochondrial matrix; GO:0042803,protein homodimerization activity; GO:0043621,protein self-association; GO:0046982,protein heterodimerization activity; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	--	NP_564475.1 Co-chaperone GrpE family protein [Arabidopsis thaliana]	59	62	37	16
AT5G13290	no change	1.189607817085756	0.18686887608477737	0.5193923289888593	AT5G13290	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005102,signaling receptor binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009909,regulation of flower development; GO:0010075,regulation of meristem growth; GO:0010078,maintenance of root meristem identity; GO:0010088,phloem development; GO:0016020,membrane; GO:0033612,receptor serine/threonine kinase binding; GO:0042742,defense response to bacterium; GO:0045595,regulation of cell differentiation;	--	NP_850812.2 Protein kinase superfamily protein [Arabidopsis thaliana]	14	14	20	12
AT5G58240	no change	-0.7575091922996062	0.1869651639164506	0.5193923289888593	AT5G58240	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0043530,adenosine 5'-monophosphoramidase activity; GO:0047352,adenylylsulfate-ammonia adenylyltransferase activity; GO:0047627,adenylylsulfatase activity; GO:0047710,bis(5'-adenosyl)-triphosphatase activity;	FHIT; bis(5'-adenosyl)-triphosphatase [EC:3.6.1.29]; K01522;	NP_200632.2 FRAGILE HISTIDINE TRIAD [Arabidopsis thaliana]	44	35	49	26
AT2G22330	no change	-1.196889412926838	0.18710814816314736	0.5193923289888593	AT2G22330	--	GO:0002229,defense response to oomycetes; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006569,tryptophan catabolic process; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009682,induced systemic resistance; GO:0009684,indoleacetic acid biosynthetic process; GO:0010112,regulation of systemic acquired resistance; GO:0010120,camalexin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019761,glucosinolate biosynthetic process; GO:0020037,heme binding; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0052544,defense response by callose deposition in cell wall;	CYP79B3; tryptophan N-monooxygenase [EC:1.14.14.156]; K11813;	NP_001323954.1 cytochrome P450, family 79, subfamily B, polypeptide 3 [Arabidopsis thaliana]	22	15	25	7
AT2G38000	no change	-0.6471280311967886	0.1872982147460566	0.5193923289888593	AT2G38000	--	GO:0005783,endoplasmic reticulum;	--	NP_181336.1 chaperone protein dnaJ-like protein [Arabidopsis thaliana]	100	73	64	44
AT5G04670	no change	0.6264396893820061	0.18746399493782137	0.5193923289888593	AT5G04670	--	GO:0005634,nucleus; GO:0006357,regulation of transcription by RNA polymerase II; GO:0032777,Piccolo NuA4 histone acetyltransferase complex; GO:0035267,NuA4 histone acetyltransferase complex;	--	NP_001330507.1 Enhancer of polycomb-like transcription factor protein [Arabidopsis thaliana]	90	52	57	41
AT2G37990	no change	0.8968902276588544	0.18755267203959208	0.5193923289888593	AT2G37990	--	GO:0000055,ribosomal large subunit export from nucleus; GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis;	--	NP_565878.1 ribosome biogenesis regulatory protein (RRS1) family protein [Arabidopsis thaliana]	188	168	237	175
AT2G38480	no change	-0.9955418646026716	0.18776199352124823	0.5194068190343226	AT2G38480	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_565891.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	29	53	36	37
AT1G23130	no change	0.6982336299470298	0.18982298458082825	0.5245379975659151	AT1G23130	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response;	--	NP_564190.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	394	365	209	175
AT5G58560	no change	0.4972447527610635	0.1904315878188871	0.5255119185962015	AT5G58560	--	GO:0006720,isoprenoid metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016487,farnesol metabolic process; GO:0016740,transferase activity; GO:0031969,chloroplast membrane; GO:0048440,carpel development; GO:0052668,CTP:farnesol kinase activity; GO:0052670,geraniol kinase activity; GO:0052671,geranylgeraniol kinase activity; GO:0052672,CTP:geranylgeraniol kinase activity; GO:0102237,ATP:farnesol kinase activity; GO:0102243,ATP:geranylgeraniol phosphotransferase activity;	FOLK; farnesol kinase [EC:2.7.1.216]; K15892;	NP_200664.1 Phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana]	180	137	120	88
AT5G47730	no change	1.037101093149536	0.19058840898400548	0.5255119185962015	AT5G47730	--	GO:0003674,molecular_function;	--	NP_001330995.1 Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]	25	38	27	18
AT5G67600	no change	-0.6232363292997833	0.1911489574240485	0.5264871175803068	AT5G67600	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009554,megasporogenesis; GO:0016020,membrane; GO:0042803,protein homodimerization activity; GO:0043621,protein self-association;	--	NP_569052.1 cysteine-rich TM module stress tolerance protein [Arabidopsis thaliana]	120	83	85	51
AT1G11755	no change	-0.8360324361337383	0.19185508860256695	0.5276466513912821	AT1G11755	--	GO:0005783,endoplasmic reticulum; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0009414,response to water deprivation; GO:0009645,response to low light intensity stimulus; GO:0016020,membrane; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; GO:0019408,dolichol biosynthetic process; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0045547,dehydrodolichyl diphosphate synthase activity; GO:1904423,dehydrodolichyl diphosphate synthase complex;	DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87]; K11778;	NP_001077518.1 Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]	276	241	147	120
AT4G01790	no change	1.5427307139964697	0.19198459693058045	0.5276466513912821	AT4G01790	--	GO:0003674,molecular_function; GO:0005840,ribosome; GO:0008150,biological_process;	--	NP_192088.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	9	4	8	15
AT3G14100	no change	0.4191925693692595	0.1924430444405357	0.5283360820940274	AT3G14100	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0034063,stress granule assembly; GO:0071456,cellular response to hypoxia;	--	NP_188026.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	233	202	188	149
AT2G35420	no change	-0.934568090344028	0.19321007269947743	0.5286293607763303	AT2G35420	--	GO:0003674,molecular_function; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_181085.2 RING/U-box superfamily protein [Arabidopsis thaliana]	45	35	16	11
AT5G62920	no change	-1.0726080578247874	0.19342613961928856	0.5286293607763303	AT5G62920	--	GO:0000156,phosphorelay response regulator activity; GO:0000160,phosphorelay signal transduction system; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009735,response to cytokinin; GO:0009736,cytokinin-activated signaling pathway;	ARR-A; two-component response regulator ARR-A family; K14492;	NP_201097.1 response regulator 6 [Arabidopsis thaliana]	31	20	20	9
AT4G32290	no change	-0.95482158888875	0.1936451024195754	0.5286293607763303	AT4G32290	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_194956.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	101	62	48	29
AT3G17640	no change	1.305375881504931	0.1936454318587245	0.5286293607763303	AT3G17640	--	GO:0005515,protein binding;	--	NP_188391.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	18	20	18	4
AT3G47070	no change	-0.485308091330078	0.1937839328308558	0.5286293607763303	AT3G47070	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009579,thylakoid; GO:0009941,chloroplast envelope;	--	NP_190291.1 thylakoid soluble phosphoprotein [Arabidopsis thaliana]	148	154	78	46
AT1G11750	no change	-0.41533472559798224	0.1938276232209399	0.5286293607763303	AT1G11750	--	GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0009368,endopeptidase Clp complex; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0051117,ATPase binding;	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358;	NP_563893.1 CLP protease proteolytic subunit 6 [Arabidopsis thaliana]	313	252	173	143
AT5G66180	no change	1.087351021967322	0.19405111303722103	0.5286293607763303	AT5G66180	--	GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_201419.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	18	19	14	21
AT4G15530	no change	-0.7904544312448305	0.19421157262313116	0.5286293607763303	AT4G15530	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006090,pyruvate metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015979,photosynthesis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0050242,pyruvate, phosphate dikinase activity;	ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]; K01006;	NP_193288.2 pyruvate orthophosphate dikinase [Arabidopsis thaliana]	651	688	273	286
AT5G66450	no change	0.9900633226036444	0.1948771005469783	0.5294553670524703	AT5G66450	--	GO:0005789,endoplasmic reticulum membrane; GO:0006487,protein N-linked glycosylation; GO:0006651,diacylglycerol biosynthetic process; GO:0008195,phosphatidate phosphatase activity; GO:0008610,lipid biosynthetic process; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0044238,primary metabolic process; GO:0044249,cellular biosynthetic process; GO:0047874,dolichyldiphosphatase activity; GO:1901576,organic substance biosynthetic process;	--	NP_001078807.1 Phosphatidic acid phosphatase (PAP2) family protein [Arabidopsis thaliana]	31	29	27	26
AT3G58570	no change	-0.3968691255815351	0.19508044582473352	0.5294553670524703	AT3G58570	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	DDX3X, bel; ATP-dependent RNA helicase DDX3X [EC:3.6.4.13]; K11594;	NP_191416.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	401	397	257	169
AT3G03330	no change	-0.7278840736011345	0.19513914903544877	0.5294553670524703	AT3G03330	--	GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity;	DHRS7; dehydrogenase/reductase SDR family member 7 [EC:1.1.-.-]; K11165;	NP_186983.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	97	100	71	42
AT4G32570	no change	-0.9097388628497782	0.19537839724451897	0.5295399584529294	AT4G32570	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009611,response to wounding; GO:0031347,regulation of defense response; GO:2000022,regulation of jasmonic acid mediated signaling pathway;	--	NP_567898.1 TIFY domain protein 8 [Arabidopsis thaliana]	40	32	26	15
AT5G57070	no change	-0.5279995747804547	0.19593695837263425	0.5298513066003447	AT5G57070	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_200517.2 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	162	147	145	115
AT2G42330	no change	-1.1072634389810003	0.19612755662936177	0.5298513066003447	AT2G42330	--	GO:0000390,spliceosomal complex disassembly; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0006468,protein phosphorylation; GO:0006807,nitrogen compound metabolic process; GO:0008380,RNA splicing; GO:0010600,regulation of auxin biosynthetic process; GO:0043170,macromolecule metabolic process; GO:0044238,primary metabolic process; GO:0071008,U2-type post-mRNA release spliceosomal complex;	--	NP_001078041.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]	44	15	10	14
AT2G46210	no change	1.2392812610729358	0.1961729998660135	0.5298513066003447	AT2G46210	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016717,oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; GO:0030148,sphingolipid biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0046872,metal ion binding; GO:0052631,sphingolipid delta-8 desaturase activity; GO:0070417,cellular response to cold;	SLD; sphingolipid 8-(E/Z)-desaturase [EC:1.14.19.29]; K21734;	NP_182144.1 Fatty acid/sphingolipid desaturase [Arabidopsis thaliana]	20	23	5	23
AT1G21650	no change	0.6339753955607934	0.19642234134145595	0.5298513066003447	AT1G21650	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0015462,ABC-type protein transporter activity; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0017038,protein import; GO:0031969,chloroplast membrane; GO:0071806,protein transmembrane transport;	secA; preprotein translocase subunit SecA [EC:7.4.2.8]; K03070;	NP_173584.5 Preprotein translocase SecA family protein [Arabidopsis thaliana]	55	48	56	42
AT3G63160	no change	0.8234665104999923	0.19653423710441081	0.5298513066003447	AT3G63160	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009535,chloroplast thylakoid membrane; GO:0009579,thylakoid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane;	--	NP_191875.1 outer envelope membrane protein [Arabidopsis thaliana]	84	105	75	86
AT5G64970	no change	-1.429527454096892	0.19709242591708737	0.5307938877872881	AT5G64970	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_201302.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	14	17	5	9
AT1G78580	no change	0.7711180776718756	0.19768924224415	0.5318383948323062	AT1G78580	--	GO:0003824,catalytic activity; GO:0003825,alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005991,trehalose metabolic process; GO:0005992,trehalose biosynthetic process; GO:0009793,embryo development ending in seed dormancy; GO:0009832,plant-type cell wall biogenesis; GO:0010182,sugar mediated signaling pathway; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0048364,root development; GO:0048574,long-day photoperiodism, flowering; GO:0051301,cell division; GO:0070413,trehalose metabolism in response to stress; GO:0080186,developmental vegetative growth;	TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]; K16055;	NP_001319403.1 trehalose-6-phosphate synthase [Arabidopsis thaliana]	257	163	224	137
AT1G32860	no change	0.92600031787404	0.1987162282112276	0.5338426862340461	AT1G32860	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_174563.2 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	74	43	57	43
AT1G69890	no change	0.6119114883995964	0.19885377860505923	0.5338426862340461	AT1G69890	--	GO:0071456,cellular response to hypoxia; GO:0071731,response to nitric oxide;	--	NP_564980.1 actin cross-linking protein (DUF569) [Arabidopsis thaliana]	69	88	46	39
AT1G48300	no change	-0.5880246167642857	0.19957087028879852	0.5348388378302668	AT1G48300	--	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005829,cytosol; GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019432,triglyceride biosynthetic process; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	DGAT3; diacylglycerol O-acyltransferase 3, plant [EC:2.3.1.20]; K22849;	NP_175264.3 diacylglycerol acyltransferase [Arabidopsis thaliana]	285	322	161	134
AT4G12300	no change	1.025488772967229	0.19964514575196596	0.5348388378302668	AT4G12300	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_192967.1 cytochrome P450, family 706, subfamily A, polypeptide 4 [Arabidopsis thaliana]	109	89	53	55
AT1G66130	no change	-0.8267750520616568	0.19989816665264595	0.5349535584973543	AT1G66130	--	GO:0000166,nucleotide binding; GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_176787.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	56	72	24	27
AT5G02890	no change	1.0482887332740596	0.2003366224263804	0.5352796332319225	AT5G02890	--	GO:0005575,cellular_component; GO:0010025,wax biosynthetic process; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0042759,long-chain fatty acid biosynthetic process;	--	NP_195909.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	90	57	49	36
AT2G35960	no change	0.8644518890693362	0.20052767002784017	0.5352796332319225	AT2G35960	--	GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0098542,defense response to other organism;	--	NP_181140.1 NDR1/HIN1-like 12 [Arabidopsis thaliana]	89	41	45	44
AT2G23740	no change	0.5229575894193657	0.20065099021738864	0.5352796332319225	AT2G23740	--	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0008168,methyltransferase activity; GO:0008270,zinc ion binding; GO:0016740,transferase activity; GO:0018024,histone-lysine N-methyltransferase activity; GO:0032259,methylation; GO:0034968,histone lysine methylation; GO:0043565,sequence-specific DNA binding; GO:0045814,negative regulation of gene expression, epigenetic; GO:0046872,metal ion binding; GO:1900109,regulation of histone H3-K9 dimethylation;	--	NP_001189585.1 histone-lysine N-methyltransferase SUVR5 [Arabidopsis thaliana]	138	123	107	76
AT3G45290	no change	0.8295958943962143	0.20130255973039887	0.5364555125799635	AT3G45290	--	GO:0005516,calmodulin binding; GO:0006952,defense response; GO:0009607,response to biotic stimulus; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_566879.1 Seven transmembrane MLO family protein [Arabidopsis thaliana]	44	39	23	18
AT4G18465	no change	0.7865097124690905	0.2021923022704299	0.5382629804165733	AT4G18465	--	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005681,spliceosomal complex; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_567558.2 RNA helicase family protein [Arabidopsis thaliana]	54	41	46	33
AT5G40340	no change	0.9452359149379	0.20242391082977543	0.5383164608796014	AT5G40340	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription; GO:0009506,plasmodesma; GO:0009908,flower development; GO:0035098,ESC/E(Z) complex; GO:0098532,histone H3-K27 trimethylation; GO:2000028,regulation of photoperiodism, flowering;	--	NP_001331897.1 Tudor/PWWP/MBT superfamily protein [Arabidopsis thaliana]	204	204	204	106
AT5G10830	no change	1.094941182747716	0.2038251702198669	0.5414770962521517	AT5G10830	--	GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_196644.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	34	14	12	17
AT5G49530	no change	-0.7039570928956831	0.2041755608549621	0.5418423382438776	AT5G49530	--	GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006351,DNA-templated transcription;	RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5; K14721;	NP_199764.1 SIN-like family protein [Arabidopsis thaliana]	135	88	87	41
AT5G47580	no change	1.2576416737364706	0.20480697530921632	0.5429518251687037	AT5G47580	--	GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_199569.1 transmembrane protein [Arabidopsis thaliana]	15	18	9	11
AT5G63010	no change	1.0790775352850543	0.20533321288268988	0.5435942847169949	AT5G63010	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0017183,peptidyl-diphthamide biosynthetic process from peptidyl-histidine; GO:0061685,diphthine methylesterase activity; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	--	NP_201106.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	21	18	11	25
AT4G20150	no change	0.7725151045164491	0.20547650369263223	0.5435942847169949	AT4G20150	--	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0005829,cytosol;	--	NP_567596.1 excitatory amino acid transporter [Arabidopsis thaliana]	800	434	577	385
AT1G50490	no change	0.8766485687706655	0.20570891774140784	0.543644024560626	AT1G50490	--	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0030071,regulation of mitotic metaphase/anaphase transition; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0061631,ubiquitin conjugating enzyme activity;	UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C [EC:2.3.2.23]; K06688;	NP_564572.1 ubiquitin-conjugating enzyme 20 [Arabidopsis thaliana]	107	80	79	55
AT1G24290	no change	-1.5272056621834444	0.20643783927574635	0.5450044615734175	AT1G24290	--	GO:0000731,DNA synthesis involved in DNA repair; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006261,DNA-templated DNA replication; GO:0008047,enzyme activator activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0050790,regulation of catalytic activity;	ycaJ; putative ATPase; K07478;	NP_173839.1 AAA-type ATPase family protein [Arabidopsis thaliana]	20	17	9	1
AT1G76400	no change	-0.6861426434722286	0.20759648716131743	0.5474953987829564	AT1G76400	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0008250,oligosaccharyltransferase complex; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0018279,protein N-linked glycosylation via asparagine;	OST1, RPN1; oligosaccharyltransferase complex subunit alpha (ribophorin I); K12666;	NP_177766.1 Ribophorin I [Arabidopsis thaliana]	371	319	319	240
AT3G16010	no change	0.7819271353458461	0.2079134771878963	0.5476415940438307	AT3G16010	--	GO:0000373,Group II intron splicing; GO:0000963,mitochondrial RNA processing; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0032981,mitochondrial respiratory chain complex I assembly;	--	AAO42273.1 unknown protein [Arabidopsis thaliana]	44	26	30	33
AT5G65620	no change	0.33326454010800566	0.2080822874029015	0.5476415940438307	AT5G65620	--	GO:0004222,metalloendopeptidase activity; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006508,proteolysis; GO:0006518,peptide metabolic process; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_001332654.1 Zincin-like metalloproteases family protein [Arabidopsis thaliana]	1051	985	689	567
AT3G47820	no change	0.9732195860535856	0.2093351069699074	0.5503696768991884	AT3G47820	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_190366.2 PLANT U-BOX 39 [Arabidopsis thaliana]	20	19	20	21
AT3G55090	no change	0.6939135926893432	0.2104981353366545	0.552856299723205	AT3G55090	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010208,pollen wall assembly; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_191069.2 ABC-2 type transporter family protein [Arabidopsis thaliana]	48	68	39	26
AT1G54310	no change	0.778554586505745	0.21103298607249785	0.5536896387159866	AT1G54310	--	GO:0003723,RNA binding; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_974023.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	41	28	38	23
AT5G59580	no change	1.5592607713146318	0.2126047518548424	0.557239025201415	AT5G59580	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_200766.2 UDP-glucosyl transferase 76E1 [Arabidopsis thaliana]	5	12	5	13
AT5G43870	no change	-0.4317040800276679	0.2138347518103444	0.5598862585980726	AT5G43870	--	GO:0005802,trans-Golgi network; GO:0006892,post-Golgi vesicle-mediated transport; GO:0009734,auxin-activated signaling pathway; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation;	--	NP_199200.1 auxin canalization protein (DUF828) [Arabidopsis thaliana]	147	124	122	68
AT3G15350	no change	0.9177794280170524	0.21457879799277552	0.5608205857505176	AT3G15350	--	GO:0015020,glucuronosyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_566506.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	39	43	38	45
AT2G33810	no change	0.9127343706225624	0.21463231847583655	0.5608205857505176	AT2G33810	SBP	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development; GO:0009911,positive regulation of flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010229,inflorescence development; GO:0010321,regulation of vegetative phase change; GO:0030154,cell differentiation; GO:0046872,metal ion binding;	--	NP_565771.1 squamosa promoter binding protein-like 3 [Arabidopsis thaliana]	95	83	81	61
AT4G17520	no change	-0.4230167794078987	0.2153676921367457	0.56161481808435	AT4G17520	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0048471,perinuclear region of cytoplasm;	--	NP_193485.1 Hyaluronan / mRNA binding family [Arabidopsis thaliana]	1056	977	809	688
AT5G42820	no change	0.4236003411542733	0.2153776276818568	0.56161481808435	AT5G42820	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0030628,pre-mRNA 3'-splice site binding; GO:0046872,metal ion binding; GO:0048573,photoperiodism, flowering; GO:0089701,U2AF complex;	U2AF1; splicing factor U2AF 35 kDa subunit; K12836;	NP_199096.1 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]	174	130	146	73
AT5G16340	no change	-0.849944973641815	0.21717475821557597	0.56554644450792	AT5G16340	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_197138.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	49	70	17	20
AT1G33430	no change	-0.6080458304772556	0.2173298321134561	0.56554644450792	AT1G33430	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0008194,UDP-glycosyltransferase activity; GO:0008378,galactosyltransferase activity; GO:0010407,non-classical arabinogalactan protein metabolic process; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0048531,beta-1,3-galactosyltransferase activity;	--	NP_001185130.1 Galactosyltransferase family protein [Arabidopsis thaliana]	398	362	139	130
AT1G21760	no change	-0.7084084563882325	0.2183266269593673	0.5675600261609701	AT1G21760	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006417,regulation of translation; GO:0009408,response to heat; GO:0009409,response to cold; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; GO:0090406,pollen tube;	--	NP_564150.1 F-box protein 7 [Arabidopsis thaliana]	64	55	25	59
AT5G04090	no change	-0.7399887388919559	0.21896760135528337	0.5686454545399962	AT5G04090	--	GO:0003674,molecular_function; GO:0016874,ligase activity;	--	NP_974728.2 histidine-tRNA ligase [Arabidopsis thaliana]	103	80	69	62
AT2G43640	no change	0.6979304879620845	0.21957503616894627	0.5689976017243277	AT2G43640	--	GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0030942,endoplasmic reticulum signal peptide binding; GO:0045047,protein targeting to ER; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP14; signal recognition particle subunit SRP14; K03104;	NP_001189744.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]	29	34	57	33
AT2G41760	no change	1.2551703138214592	0.2195941460255679	0.5689976017243277	AT2G41760	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response; GO:0008418,protein-N-terminal asparagine amidohydrolase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0042742,defense response to bacterium; GO:0070773,protein-N-terminal glutamine amidohydrolase activity; GO:1901183,positive regulation of camalexin biosynthetic process;	NTAQ1; protein N-terminal glutamine amidohydrolase [EC:3.5.1.122]; K21286;	NP_565959.1 amino-terminal glutamine amidohydrolase [Arabidopsis thaliana]	5	8	18	15
AT5G11060	no change	0.9412428788750482	0.21977392632417056	0.5689976017243277	AT5G11060	TALE	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009416,response to light stimulus;	--	CAA63131.1 KNAT4 homeobox protein [Arabidopsis thaliana]	110	138	102	101
AT3G13230	no change	-0.593266418183112	0.2207269390876449	0.5708842072947726	AT3G13230	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0008150,biological_process;	--	NP_001326485.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana]	123	135	176	146
AT1G62810	no change	-0.7295628977160904	0.22128534983329395	0.5709887087758285	AT1G62810	--	GO:0002237,response to molecule of bacterial origin; GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006809,nitric oxide biosynthetic process; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009414,response to water deprivation; GO:0009447,putrescine catabolic process; GO:0009611,response to wounding; GO:0009733,response to auxin; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0048046,apoplast; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; GO:1904585,response to putrescine;	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276;	NP_176469.1 Copper amine oxidase family protein [Arabidopsis thaliana]	47	46	27	24
AT5G25610	no change	0.8739758937891171	0.22131902314090957	0.5709887087758285	AT5G25610	--	GO:0003729,mRNA binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0009651,response to salt stress;	--	NP_197943.1 BURP domain-containing protein [Arabidopsis thaliana]	4196	4278	3488	2621
AT5G55210	no change	-0.48871397441922504	0.22152939428075016	0.5709887087758285	AT5G55210	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0072598,protein localization to chloroplast;	--	NP_200332.1 hypothetical protein AT5G55210 [Arabidopsis thaliana]	117	110	95	71
AT1G78280	no change	-0.7624669157767912	0.22166477181552796	0.5709887087758285	AT1G78280	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_177951.6 transferases, transferring glycosyl groups [Arabidopsis thaliana]	119	162	100	77
AT1G76050	no change	-0.8862544914301012	0.22192006806679043	0.5710683248028126	AT1G76050	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0006364,rRNA processing; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_974151.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	23	40	21	19
AT2G05380	no change	-0.8191451571288129	0.223573920060163	0.5740630364204893	AT2G05380	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion;	--	NP_001324794.1 glycine-rich protein 3 short isoform [Arabidopsis thaliana]	45	38	29	12
AT4G00390	no change	-1.351122759603772	0.22380522729202332	0.5740630364204893	AT4G00390	GeBP	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription;	--	NP_191949.1 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]	26	10	6	5
AT3G10060	no change	1.0185430954536088	0.22397812731167516	0.5740630364204893	AT3G10060	--	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity;	--	NP_187617.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	103	118	67	45
AT3G11570	no change	-1.6486349096464892	0.22417476125801775	0.5740630364204893	AT3G11570	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	--	NP_187764.1 TRICHOME BIREFRINGENCE-LIKE 8 [Arabidopsis thaliana]	15	17	4	1
AT3G50690	no change	0.899074179012409	0.224211653517472	0.5740630364204893	AT3G50690	--	GO:0005515,protein binding; GO:0042393,histone binding;	--	NP_190638.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	210	165	158	145
AT4G37870	no change	0.9380685447614354	0.22481680848811209	0.57503394733894	AT4G37870	--	GO:0000166,nucleotide binding; GO:0004611,phosphoenolpyruvate carboxykinase activity; GO:0004612,phosphoenolpyruvate carboxykinase (ATP) activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0016036,cellular response to phosphate starvation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0017076,purine nucleotide binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus;	E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]; K01610;	NP_195500.1 phosphoenolpyruvate carboxykinase 1 [Arabidopsis thaliana]	863	720	444	381
AT2G27310	no change	-0.9237015047287044	0.2258653393664909	0.5771358320157823	AT2G27310	--	GO:0005515,protein binding; GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_180299.1 F-box family protein [Arabidopsis thaliana]	28	34	17	12
AT5G41810	no change	-0.7767206122434969	0.2261646822410179	0.5773210795420166	AT5G41810	--	--	--	NP_568598.3 Avr9/Cf-9 rapidly elicited protein [Arabidopsis thaliana]	50	67	40	28
AT1G60990	no change	0.3591879081332663	0.2265328527307035	0.5776814731459323	AT1G60990	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity;	--	NP_001077748.1 Glycine cleavage T-protein family [Arabidopsis thaliana]	321	262	233	154
AT4G21065	no change	-1.7032225280953703	0.22772331268766316	0.5796982009869999	AT4G21065	--	GO:0005515,protein binding; GO:0008150,biological_process; GO:0008270,zinc ion binding;	--	NP_001078414.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	9	11	3	5
AT5G01530	no change	-0.3082942599442893	0.22791286729466675	0.5796982009869999	AT5G01530	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915;	NP_195773.1 light harvesting complex photosystem II [Arabidopsis thaliana]	6366	5978	3133	2524
AT3G25920	no change	-0.5191948525305525	0.22801079751363235	0.5796982009869999	AT3G25920	--	GO:0000311,plastid large ribosomal subunit; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L15, MRPL15, rplO; large subunit ribosomal protein L15; K02876;	NP_189221.1 ribosomal protein L15 [Arabidopsis thaliana]	460	532	267	192
AT4G08320	no change	-0.8901711951060829	0.228234812333585	0.5796982009869999	AT4G08320	--	GO:0005515,protein binding; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0016020,membrane; GO:0060090,molecular adaptor activity; GO:0072380,TRC complex;	--	NP_192572.2 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	56	38	22	21
AT5G35630	no change	0.6518157119999426	0.22848532403175784	0.5797558820147793	AT5G35630	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004356,glutamate-ammonia ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006542,glutamine biosynthetic process; GO:0006807,nitrogen compound metabolic process; GO:0007568,aging; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0019676,ammonia assimilation cycle; GO:0022626,cytosolic ribosome; GO:0043436,oxoacid metabolic process; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:1901149,salicylic acid binding;	glnA, GLUL; glutamine synthetase [EC:6.3.1.2]; K01915;	NP_001031969.1 glutamine synthetase 2 [Arabidopsis thaliana]	3721	3398	2127	1949
AT5G42280	no change	-0.8631752118495903	0.22889473763722304	0.5802162423174628	AT5G42280	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001330864.1 Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]	41	36	18	11
AT1G63240	no change	-0.5802901760456152	0.23003238195388548	0.5807197374767641	AT1G63240	--	GO:0003908,methylated-DNA-[protein]-cysteine S-methyltransferase activity;	--	NP_564812.1 hypothetical protein AT1G63240 [Arabidopsis thaliana]	87	79	35	54
AT1G47420	no change	-0.5741319502681961	0.2300850122385399	0.5807197374767641	AT1G47420	--	GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005749,mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone); GO:0006099,tricarboxylic acid cycle; GO:0016020,membrane; GO:0045273,respiratory chain complex II;	--	NP_564506.1 succinate dehydrogenase 5 [Arabidopsis thaliana]	565	551	408	307
AT2G47780	no change	1.272256012295987	0.2305430512601968	0.5807197374767641	AT2G47780	--	GO:0005811,lipid droplet; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation;	--	NP_182299.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana]	5	7	12	19
AT5G19000	no change	0.5256256164665674	0.2305955235210203	0.5807197374767641	AT5G19000	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006970,response to osmotic stress; GO:0016567,protein ubiquitination; GO:0042631,cellular response to water deprivation; GO:0042802,identical protein binding; GO:0071472,cellular response to salt stress;	SPOP; speckle-type POZ protein; K10523;	NP_001190334.1 BTB-POZ and MATH domain 1 [Arabidopsis thaliana]	60	67	79	54
AT3G15352	no change	1.6153565022235163	0.2308537498304725	0.5807197374767641	AT3G15352	--	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005758,mitochondrial intermembrane space; GO:0009617,response to bacterium; GO:0016020,membrane; GO:0016531,copper chaperone activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding;	COX17; cytochrome c oxidase assembly protein subunit 17; K02260;	NP_566508.1 cytochrome c oxidase 17 [Arabidopsis thaliana]	16	1	20	4
AT3G15730	no change	0.9541394904109276	0.23087664427737983	0.5807197374767641	AT3G15730	--	GO:0003824,catalytic activity; GO:0004620,phospholipase activity; GO:0004630,phospholipase D activity; GO:0005096,GTPase activator activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0009395,phospholipid catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0009873,ethylene-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0010358,leaf shaping; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0031966,mitochondrial membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0050790,regulation of catalytic activity; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_188194.1 phospholipase D alpha 1 [Arabidopsis thaliana]	6134	5167	2395	2326
AT1G33420	no change	-0.5195282579857459	0.23099044388781875	0.5807197374767641	AT1G33420	--	GO:0005634,nucleus; GO:0046872,metal ion binding;	--	NP_564424.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	97	68	65	46
AT3G48780	no change	0.5340922079243935	0.2312666985314709	0.5807197374767641	AT3G48780	--	GO:0003824,catalytic activity; GO:0004758,serine C-palmitoyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0009058,biosynthetic process; GO:0009555,pollen development; GO:0009640,photomorphogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0017059,serine C-palmitoyltransferase complex; GO:0030148,sphingolipid biosynthetic process; GO:0030170,pyridoxal phosphate binding; GO:0046512,sphingosine biosynthetic process; GO:0046513,ceramide biosynthetic process;	SPT; serine palmitoyltransferase [EC:2.3.1.50]; K00654;	NP_001325849.1 serine palmitoyltransferase 1 [Arabidopsis thaliana]	191	171	98	80
AT2G04850	no change	0.6609642870039156	0.23137347417298224	0.5807197374767641	AT2G04850	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_565316.1 Auxin-responsive family protein [Arabidopsis thaliana]	65	39	35	66
AT4G36720	no change	-1.2760223020581112	0.2313751724170683	0.5807197374767641	AT4G36720	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_195390.2 HVA22-like protein K [Arabidopsis thaliana]	19	22	16	2
AT5G28300	no change	0.6043485167865761	0.23204377438067597	0.5813802410827708	AT5G28300	Trihelix	GO:0000987,cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	BAE99307.1 GTL1 - like protein [Arabidopsis thaliana]	98	93	63	33
AT3G52100	no change	1.063383737515171	0.23209521608648137	0.5813802410827708	AT3G52100	--	GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0006351,DNA-templated transcription; GO:0009506,plasmodesma; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding;	--	NP_001327259.1 RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]	37	54	32	21
AT2G47330	no change	0.5011547623669648	0.2325384150148968	0.5819176658927359	AT2G47330	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	DDX42, SF3B125; ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]; K12835;	NP_566099.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	132	132	135	91
AT4G36030	no change	0.8074661193998462	0.23327507856391885	0.5831876964097972	AT4G36030	--	GO:0005515,protein binding; GO:0007166,cell surface receptor signaling pathway;	--	NP_195327.1 armadillo repeat only 3 [Arabidopsis thaliana]	25	32	27	24
AT2G13360	no change	0.4079551433164088	0.2336513466017049	0.5834588192226374	AT2G13360	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004760,serine-pyruvate transaminase activity; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008453,alanine-glyoxylate transaminase activity; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009853,photorespiration; GO:0016740,transferase activity; GO:0019265,glycine biosynthetic process, by transamination of glyoxylate; GO:0048046,apoplast; GO:0050281,serine-glyoxylate transaminase activity;	AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]; K00830;	NP_001318216.1 alanine:glyoxylate aminotransferase [Arabidopsis thaliana]	1444	1268	925	710
AT2G27330	no change	1.5605295726541613	0.23394755908455991	0.5834588192226374	AT2G27330	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0008150,biological_process;	--	NP_565646.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	10	2	9	10
AT4G01330	no change	-0.5404912233603874	0.23427933964184605	0.5834588192226374	AT4G01330	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_192042.5 Protein kinase superfamily protein [Arabidopsis thaliana]	129	81	87	60
AT5G55450	no change	1.3618976742867073	0.23447487774311468	0.5834588192226374	AT5G55450	--	GO:0005504,fatty acid binding; GO:0009627,systemic acquired resistance; GO:0051707,response to other organism;	--	NP_568824.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]	15	15	12	3
AT1G14370	no change	1.132386927416395	0.2345298122061918	0.5834588192226374	AT1G14370	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030957,Tat protein binding; GO:0106310,protein serine kinase activity; GO:1900426,positive regulation of defense response to bacterium;	--	NP_172889.1 protein kinase 2A [Arabidopsis thaliana]	9	13	17	14
AT1G77940	no change	-0.622708920044011	0.2349028908199656	0.5835670793895441	AT1G77940	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L30e, RPL30; large subunit ribosomal protein L30e; K02908;	NP_565164.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	947	849	1062	899
AT4G38460	no change	0.5154083334080415	0.23503192784844115	0.5835670793895441	AT4G38460	--	GO:0004161,dimethylallyltranstransferase activity; GO:0004659,prenyltransferase activity; GO:0005515,protein binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0042651,thylakoid membrane; GO:0043693,monoterpene biosynthetic process; GO:0046872,metal ion binding;	GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; K13789;	NP_195558.1 geranylgeranyl reductase [Arabidopsis thaliana]	519	496	409	332
AT1G17220	no change	0.93187184043515	0.23555634411887452	0.5842991186964285	AT1G17220	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006412,translation; GO:0006413,translational initiation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_173165.1 Translation initiation factor 2, small GTP-binding protein [Arabidopsis thaliana]	663	526	339	285
AT4G39630	no change	-1.2331636390866605	0.2361391000124552	0.5846483704310269	AT4G39630	--	GO:0000775,chromosome, centromeric region; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0006413,translational initiation;	--	NP_001327971.1 translation initiation factor [Arabidopsis thaliana]	25	13	8	6
AT4G32450	no change	-1.6522395283158708	0.2361565912782301	0.5846483704310269	AT4G32450	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle;	--	NP_194971.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	14	6	5	4
AT5G03620	no change	0.852595696456671	0.23669934503027212	0.5854225783304592	AT5G03620	--	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_001331443.1 Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	88	65	25	36
AT3G50860	no change	-1.0368765806332547	0.2370992675971478	0.5858423650822729	AT3G50860	--	GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006886,intracellular protein transport; GO:0006896,Golgi to vacuole transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030117,membrane coat; GO:0030123,AP-3 adaptor complex; GO:0030659,cytoplasmic vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:0043231,intracellular membrane-bounded organelle;	AP3S; AP-3 complex subunit sigma; K12399;	NP_001327312.1 Clathrin adaptor complex small chain family protein [Arabidopsis thaliana]	30	13	15	12
AT5G51980	no change	-0.7582633447548499	0.2377161503009978	0.5867968986576522	AT5G51980	C3H	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0046872,metal ion binding;	--	NP_001318784.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	42	51	18	32
AT3G04690	no change	-1.497948178396591	0.2380654818069203	0.5870897782932288	AT3G04690	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016324,apical plasma membrane; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation; GO:0090404,pollen tube tip; GO:0106310,protein serine kinase activity;	--	NP_187120.1 Malectin/receptor-like protein kinase family protein [Arabidopsis thaliana]	16	18	2	4
AT5G60390	no change	-0.6643974605815988	0.2391775819555409	0.5890303103013286	AT5G60390	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0048471,perinuclear region of cytoplasm;	EEF1A; elongation factor 1-alpha; K03231;	EFH68683.1 T6D22.2 [Arabidopsis lyrata subsp. lyrata]	9636	9517	8165	5993
AT2G31820	no change	0.7222097600996289	0.2393152616312667	0.5890303103013286	AT2G31820	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008157,protein phosphatase 1 binding; GO:0016020,membrane; GO:0019888,protein phosphatase regulator activity; GO:0035304,regulation of protein dephosphorylation; GO:0050790,regulation of catalytic activity;	--	NP_180741.1 Ankyrin repeat family protein [Arabidopsis thaliana]	82	63	75	71
AT3G10230	no change	-0.4020805016921352	0.2395810794396621	0.5891148281873816	AT3G10230	--	GO:0006744,ubiquinone biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016117,carotenoid biosynthetic process; GO:0016120,carotene biosynthetic process; GO:0016123,xanthophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016853,isomerase activity; GO:0016860,intramolecular oxidoreductase activity; GO:0045436,lycopene beta cyclase activity;	lcyB, crtL1, crtY; lycopene beta-cyclase [EC:5.5.1.19]; K06443;	NP_001078131.1 lycopene cyclase [Arabidopsis thaliana]	269	262	192	167
AT1G04030	no change	-0.8779837835715245	0.2400276587580298	0.5896432350764342	AT1G04030	--	GO:0003674,molecular_function; GO:0007142,male meiosis II;	--	NP_001320872.1 eisosome protein [Arabidopsis thaliana]	31	27	17	16
AT1G09420	no change	1.4858135403228037	0.24199356574840433	0.5936609482941105	AT1G09420	--	GO:0004345,glucose-6-phosphate dehydrogenase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050661,NADP binding;	G6PD, zwf; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]; K00036;	NP_563844.1 glucose-6-phosphate dehydrogenase 4 [Arabidopsis thaliana]	9	10	13	3
AT3G47500	no change	0.5820287842188128	0.24212969128852135	0.5936609482941105	AT3G47500	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development; GO:0046872,metal ion binding;	--	NP_190334.1 cycling DOF factor 3 [Arabidopsis thaliana]	95	87	97	35
AT1G54680	no change	-1.6319628699591604	0.24294680740821145	0.5945184407168476	AT1G54680	--	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006413,translational initiation; GO:0006508,proteolysis; GO:0016020,membrane;	--	NP_001319230.1 translation initiation factor 3 subunit I [Arabidopsis thaliana]	14	5	6	4
AT2G31990	no change	-0.7572242694793001	0.24303824423001988	0.5945184407168476	AT2G31990	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_001324319.1 Exostosin family protein [Arabidopsis thaliana]	63	37	22	17
AT2G40000	no change	0.4452977634236053	0.24330117144184937	0.5945184407168476	AT2G40000	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0006979,response to oxidative stress; GO:0009751,response to salicylic acid; GO:0019441,tryptophan catabolic process to kynurenine; GO:0020037,heme binding; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_181529.1 ortholog of sugar beet HS1 PRO-1 2 [Arabidopsis thaliana]	260	249	202	161
AT5G19360	no change	-1.2523054183902378	0.24341383702434383	0.5945184407168476	AT5G19360	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0080092,regulation of pollen tube growth; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_197437.1 calcium-dependent protein kinase 34 [Arabidopsis thaliana]	11	19	11	6
AT1G64510	no change	0.89651807149977	0.24415364879212767	0.5957536300824208	AT1G64510	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6; K02990;	NP_176632.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	387	404	201	107
AT3G07350	no change	-1.4602170805133312	0.244897074095876	0.5969952620440655	AT3G07350	--	GO:0003674,molecular_function; GO:0005524,ATP binding; GO:0071456,cellular response to hypoxia;	--	NP_566303.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506) [Arabidopsis thaliana]	10	11	6	6
AT1G48560	no change	-1.1638383723572687	0.24523475941167128	0.5972463757920606	AT1G48560	--	GO:0005515,protein binding;	--	NP_175289.2 hypothetical protein AT1G48560 [Arabidopsis thaliana]	23	20	17	3
AT1G56180	no change	-1.0995106705681614	0.2457620372241956	0.5974354875124949	AT1G56180	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0006508,proteolysis; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042651,thylakoid membrane; GO:0048366,leaf development;	--	NP_564711.1 ATP-dependent zinc metalloprotease [Arabidopsis thaliana]	44	10	16	7
AT2G38830	no change	0.8861383682650157	0.24583611841419917	0.5974354875124949	AT2G38830	--	GO:0000813,ESCRT I complex; GO:0005768,endosome; GO:0008333,endosome to lysosome transport; GO:0015031,protein transport; GO:0036211,protein modification process; GO:0043130,ubiquitin binding; GO:0110165,cellular anatomical entity;	TSG101, STP22, VPS23; ESCRT-I complex subunit TSG101; K12183;	NP_181417.2 Ubiquitin-conjugating enzyme/RWD-like protein [Arabidopsis thaliana]	26	23	17	20
AT2G20950	no change	0.7916006378902773	0.24603528461479549	0.5974354875124949	AT2G20950	--	GO:0003674,molecular_function;	--	NP_001325011.1 phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]	36	26	44	15
AT1G52500	no change	0.7405213549345735	0.2462514052654645	0.5974354875124949	AT1G52500	--	GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003684,damaged DNA binding; GO:0003824,catalytic activity; GO:0003906,DNA-(apurinic or apyrimidinic site) endonuclease activity; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0006974,cellular response to DNA damage stimulus; GO:0006979,response to oxidative stress; GO:0008152,metabolic process; GO:0008270,zinc ion binding; GO:0008534,oxidized purine nucleobase lesion DNA N-glycosylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016799,hydrolase activity, hydrolyzing N-glycosyl compounds; GO:0016829,lyase activity; GO:0019104,DNA N-glycosylase activity; GO:0140078,class I DNA-(apurinic or apyrimidinic site) endonuclease activity;	mutM, fpg; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]; K10563;	NP_564608.1 MUTM homolog-1 [Arabidopsis thaliana]	39	46	21	27
AT1G23310	no change	0.51386628573922	0.24651898405911257	0.5975150613623252	AT1G23310	--	GO:0000325,plant-type vacuole; GO:0001666,response to hypoxia; GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004021,L-alanine:2-oxoglutarate aminotransferase activity; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006545,glycine biosynthetic process; GO:0008453,alanine-glyoxylate transaminase activity; GO:0008483,transaminase activity; GO:0009058,biosynthetic process; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding; GO:0042853,L-alanine catabolic process; GO:0047958,glycine:2-oxoglutarate aminotransferase activity; GO:0048046,apoplast;	GGAT; glutamate--glyoxylate aminotransferase [EC:2.6.1.4 2.6.1.2 2.6.1.44]; K14272;	NP_564192.2 glutamate:glyoxylate aminotransferase [Arabidopsis thaliana]	803	806	490	353
AT2G42900	no change	0.762480267024011	0.24685553592565415	0.5977615023128353	AT2G42900	--	GO:0005575,cellular_component;	--	NP_181818.1 Plant basic secretory protein (BSP) family protein [Arabidopsis thaliana]	43	49	16	32
AT3G59300	no change	-0.4203609930250183	0.24760760231092063	0.5990126881000885	AT3G59300	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_567080.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	123	98	87	78
AT1G29910	no change	2.033848753533185	0.24802953799181937	0.5990392920090228	AT1G29910	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009750,response to fructose; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; GO:0048046,apoplast;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_564339.1 chlorophyll A/B binding protein 3 [Arabidopsis thaliana]	1605	1556	889	705
AT3G56940	no change	-0.5273368679846486	0.248089357083501	0.5990392920090228	AT3G56940	--	GO:0003677,DNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048529,magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity; GO:1901401,regulation of tetrapyrrole metabolic process;	E1.14.13.81, acsF, chlE; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81]; K04035;	NP_191253.1 dicarboxylate diiron protein, putative (Crd1) [Arabidopsis thaliana]	1887	1689	1295	916
AT1G69210	no change	-1.1505935128755542	0.24832597357143485	0.5990422774780111	AT1G69210	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0042274,ribosomal small subunit biogenesis;	--	NP_564954.1 Uncharacterized protein family UPF0090 [Arabidopsis thaliana]	26	12	8	10
AT3G62420	no change	1.0849818786042391	0.24892339255509977	0.5991886773856552	AT3G62420	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006971,hypotonic response; GO:0009267,cellular response to starvation; GO:0043565,sequence-specific DNA binding; GO:0045735,nutrient reservoir activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; GO:2000693,positive regulation of seed maturation;	--	NP_191801.1 basic region/leucine zipper motif 53 [Arabidopsis thaliana]	10	9	12	26
AT3G18860	no change	-0.6206109970182254	0.24938382275907053	0.5991886773856552	AT3G18860	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009506,plasmodesma; GO:0010992,ubiquitin recycling; GO:0043130,ubiquitin binding; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process;	PLAA, DOA1, UFD3; phospholipase A-2-activating protein; K14018;	NP_566620.1 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	312	325	243	196
AT3G44110	no change	0.8490504433602659	0.24968548787255793	0.5991886773856552	AT3G44110	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009651,response to salt stress; GO:0009911,positive regulation of flower development; GO:0016020,membrane; GO:0030544,Hsp70 protein binding; GO:0031072,heat shock protein binding; GO:0042026,protein refolding; GO:0043462,regulation of ATP-dependent activity; GO:0046872,metal ion binding; GO:0048573,photoperiodism, flowering; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	DNAJA2; DnaJ homolog subfamily A member 2; K09503;	NP_189997.1 DNAJ homologue 3 [Arabidopsis thaliana]	1204	1025	560	642
AT1G34000	no change	-0.476109273860458	0.250171964277349	0.5991886773856552	AT1G34000	--	GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009642,response to light intensity; GO:0010207,photosystem II assembly; GO:0016020,membrane;	--	NP_564432.3 one-helix protein 2 [Arabidopsis thaliana]	118	77	80	48
AT1G44780	no change	-0.7470936165683089	0.250185959070791	0.5991886773856552	AT1G44780	--	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005634,nucleus; GO:0006413,translational initiation; GO:0008150,biological_process;	--	NP_175099.2 translation initiation factor [Arabidopsis thaliana]	56	44	15	19
AT3G03740	no change	-0.4007201731939194	0.2501884718075729	0.5991886773856552	AT3G03740	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006970,response to osmotic stress; GO:0016567,protein ubiquitination; GO:0042631,cellular response to water deprivation; GO:0071472,cellular response to salt stress;	SPOP; speckle-type POZ protein; K10523;	NP_566212.2 BTB-POZ and MATH domain 4 [Arabidopsis thaliana]	144	106	96	84
AT3G33530	no change	0.8708313962703969	0.2503217252955084	0.5991886773856552	AT3G33530	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008150,biological_process;	--	NP_001326679.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	267	242	163	156
AT5G01970	no change	-0.8911816888710558	0.2505667242064154	0.5991886773856552	AT5G01970	--	GO:0012506,vesicle membrane; GO:0080115,myosin XI tail binding;	--	NP_195817.1 heat-inducible transcription repressor [Arabidopsis thaliana]	38	38	19	8
AT2G43970	no change	0.6138667384177472	0.25072614211396277	0.5991886773856552	AT2G43970	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005844,polysome; GO:0006396,RNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_850406.1 RNA-binding protein [Arabidopsis thaliana]	69	50	60	56
AT3G18030	no change	-0.5234356341254252	0.25110068345918496	0.5991886773856552	AT3G18030	--	GO:0003824,catalytic activity; GO:0004633,phosphopantothenoylcysteine decarboxylase activity; GO:0010181,FMN binding; GO:0015937,coenzyme A biosynthetic process; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0042538,hyperosmotic salinity response; GO:0071513,phosphopantothenoylcysteine decarboxylase complex;	PPCDC, coaC; phosphopantothenoylcysteine decarboxylase [EC:4.1.1.36]; K01598;	NP_188430.1 HAL3-like protein A [Arabidopsis thaliana]	115	85	84	36
AT5G24990	no change	-1.3078317035396072	0.2511090026315429	0.5991886773856552	AT5G24990	--	GO:0003674,molecular_function;	--	NP_197881.1 enhanced disease resistance-like protein (DUF1336) [Arabidopsis thaliana]	16	17	14	2
AT2G42980	no change	1.139134400947425	0.2512119130728857	0.5991886773856552	AT2G42980	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_181826.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	19	12	12	9
AT4G21520	no change	0.9961876567088944	0.25249748349257617	0.6016911006447625	AT4G21520	--	GO:0005515,protein binding;	--	NP_001328473.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	39	19	14	25
AT3G26210	no change	-1.5395119958858707	0.2544959732602838	0.605886110334352	AT3G26210	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_189252.1 cytochrome P450, family 71, subfamily B, polypeptide 23 [Arabidopsis thaliana]	19	17	6	0
AT4G30480	no change	-0.7296098838311096	0.25490043202097973	0.606080554125646	AT4G30480	--	GO:0005515,protein binding; GO:0051879,Hsp90 protein binding;	--	NP_001031756.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	76	54	54	57
AT3G52070	no change	1.3747388109232777	0.255198992613216	0.606080554125646	AT3G52070	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_190775.1 RNA/RNP complex-1-interacting phosphatase [Arabidopsis thaliana]	17	3	23	4
AT2G02720	no change	-0.7957563152260843	0.25529208409536047	0.606080554125646	AT2G02720	--	GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding;	pel; pectate lyase [EC:4.2.2.2]; K01728;	NP_178375.1 Pectate lyase family protein [Arabidopsis thaliana]	46	53	24	20
AT4G28160	no change	1.717884449461753	0.25639151338088073	0.6081233938064692	AT4G28160	--	--	--	NP_194545.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	10	3	9	3
AT2G20770	no change	1.3546812712223186	0.25694684758981834	0.6088731164954262	AT2G20770	--	GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0019898,extrinsic component of membrane; GO:0046872,metal ion binding;	--	NP_850003.1 GCR2-like 2 [Arabidopsis thaliana]	14	8	6	9
AT1G67360	no change	-0.4765411269285318	0.25727327589438836	0.609079522931366	AT1G67360	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0005811,lipid droplet; GO:0009555,pollen development; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0071456,cellular response to hypoxia; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation;	--	NP_176904.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana]	296	273	174	127
AT1G05190	no change	0.8496550621939214	0.25887922179441875	0.6112129408202819	AT1G05190	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009793,embryo development ending in seed dormancy; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L6, MRPL6, rplF; large subunit ribosomal protein L6; K02933;	NP_172011.1 Ribosomal protein L6 family [Arabidopsis thaliana]	417	467	357	283
AT5G25530	no change	-1.8572505696797064	0.2589444649318063	0.6112129408202819	AT5G25530	--	GO:0005829,cytosol; GO:0006457,protein folding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding;	--	NP_001332583.1 DNAJ heat shock family protein [Arabidopsis thaliana]	10	10	1	3
AT5G50240	no change	-1.172432983006054	0.25911575430170763	0.6112129408202819	AT5G50240	--	GO:0004719,protein-L-isoaspartate (D-aspartate) O-methyltransferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006479,protein methylation; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0030091,protein repair; GO:0032259,methylation; GO:0036211,protein modification process;	E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]; K00573;	NP_199835.2 protein-l-isoaspartate methyltransferase 2 [Arabidopsis thaliana]	23	16	5	9
AT3G01790	no change	0.3723688292938876	0.25913507392734153	0.6112129408202819	AT3G01790	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005762,mitochondrial large ribosomal subunit; GO:0005840,ribosome; GO:0006412,translation; GO:0017148,negative regulation of translation; GO:1990904,ribonucleoprotein complex;	RP-L13, MRPL13, rplM; large subunit ribosomal protein L13; K02871;	NP_186828.2 Ribosomal protein L13 family protein [Arabidopsis thaliana]	141	120	154	87
AT1G14010	no change	-0.4860836946765392	0.2596585272234065	0.6117399115401215	AT1G14010	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005793,endoplasmic reticulum-Golgi intermediate compartment; GO:0005794,Golgi apparatus; GO:0006886,intracellular protein transport; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0007030,Golgi organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030134,COPII-coated ER to Golgi transport vesicle; GO:0032580,Golgi cisterna membrane;	TMED10, ERV25; p24 family protein delta-1; K20352;	NP_172854.1 emp24/gp25L/p24 family/GOLD family protein [Arabidopsis thaliana]	274	226	86	106
AT3G01050	no change	-1.256157680207263	0.25983923158148187	0.6117399115401215	AT3G01050	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_001319438.1 membrane-anchored ubiquitin-fold protein 1 precursor [Arabidopsis thaliana]	18	9	10	6
AT5G06930	no change	-1.2013815883151509	0.2604609751670843	0.6126369517562195	AT5G06930	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005643,nuclear pore;	--	NP_001318495.1 nucleolar-like protein [Arabidopsis thaliana]	23	24	3	4
AT3G08660	no change	1.505169564821509	0.26105418254345625	0.6134652766141239	AT3G08660	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001327872.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	7	10	7	5
AT1G55370	no change	-1.5962248738845943	0.26160929721089876	0.6142026396694994	AT1G55370	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010628,positive regulation of gene expression; GO:0016020,membrane; GO:0030246,carbohydrate binding; GO:0047938,glucose-6-phosphate 1-epimerase activity;	--	NP_849810.1 NDH-dependent cyclic electron flow 5 [Arabidopsis thaliana]	6	12	5	4
AT1G44910	no change	0.5539294567458475	0.2618800573193852	0.6142048368364769	AT1G44910	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005685,U1 snRNP; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016592,mediator complex; GO:0045292,mRNA cis splicing, via spliceosome; GO:0070063,RNA polymerase binding; GO:0071004,U2-type prespliceosome;	PRPF40, PRP40; pre-mRNA-processing factor 40; K12821;	NP_175113.2 pre-mRNA-processing protein 40A [Arabidopsis thaliana]	131	137	130	98
AT4G14840	no change	1.368905814400634	0.2620929087640133	0.6142048368364769	AT4G14840	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001329887.1 spindle assembly abnormal protein [Arabidopsis thaliana]	5	10	12	7
AT1G70940	no change	0.582912743489997	0.2629125434019401	0.6155588067690317	AT1G70940	--	GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0009416,response to light stimulus; GO:0009606,tropism; GO:0009630,gravitropism; GO:0009734,auxin-activated signaling pathway; GO:0009926,auxin polar transport; GO:0009958,positive gravitropism; GO:0009986,cell surface; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0012506,vesicle membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016328,lateral plasma membrane; GO:0048364,root development; GO:0048766,root hair initiation; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0060918,auxin transport;	--	NP_177250.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	286	251	225	177
AT5G24940	no change	0.972663473953153	0.26336966032828485	0.6160623028818796	AT5G24940	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_197876.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	19	16	13	18
AT2G40640	no change	0.88588332913851	0.26373062415101217	0.6163401638790872	AT2G40640	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_850332.1 RING/U-box superfamily protein [Arabidopsis thaliana]	30	8	32	21
AT3G53460	no change	0.5727817446143089	0.26481733685907505	0.6183120388131615	AT3G53460	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008266,poly(U) RNA binding; GO:0008380,RNA splicing; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009631,cold acclimation; GO:0043489,RNA stabilization; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	KAG7628360.1 RNA-binding domain superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	1451	1593	1217	972
AT4G05150	no change	-0.48781901826622853	0.2654411528144281	0.6192004893792113	AT4G05150	--	GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0046777,protein autophosphorylation;	--	NP_567290.1 Octicosapeptide/Phox/Bem1p family protein [Arabidopsis thaliana]	188	152	125	85
AT5G65830	no change	1.0420764779408067	0.26603053866006143	0.6200070704119564	AT5G65830	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_201384.1 receptor like protein 57 [Arabidopsis thaliana]	18	11	11	18
AT4G38540	no change	1.4532345841051963	0.26640520231104675	0.6203122048322177	AT4G38540	--	GO:0002239,response to oomycetes; GO:0004497,monooxygenase activity; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity; GO:0071949,FAD binding;	--	NP_195566.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	2	10	8	12
AT1G30800	no change	1.382167954983494	0.26707189081287236	0.6208556160929292	AT1G30800	--	GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane;	--	NP_174366.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	6	4	8	13
AT1G56010	no change	-0.9492100280936028	0.2671264831519676	0.6208556160929292	AT1G56010	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009734,auxin-activated signaling pathway; GO:0048527,lateral root development;	--	NP_175997.1 NAC domain containing protein 1 [Arabidopsis thaliana]	40	21	9	10
AT5G15850	no change	0.9932914757714322	0.2685471808421189	0.6235881160978035	AT5G15850	CO-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009909,regulation of flower development; GO:0042802,identical protein binding; GO:0046872,metal ion binding;	--	NP_197089.1 CONSTANS-like 1 [Arabidopsis thaliana]	20	14	17	11
AT3G49730	no change	-1.1701811411218408	0.2689298987699079	0.6239075591334692	AT3G49730	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_001319717.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	24	11	11	5
AT1G79780	no change	-0.9561387771475668	0.26999612480886404	0.6255751926812475	AT1G79780	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding;	--	NP_178096.2 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]	23	32	17	6
AT5G24490	no change	-0.40861992065924824	0.2705233760232167	0.6255751926812475	AT5G24490	--	GO:0003729,mRNA binding; GO:0005840,ribosome; GO:0006417,regulation of translation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0022627,cytosolic small ribosomal subunit; GO:0043022,ribosome binding; GO:0043024,ribosomal small subunit binding; GO:0044238,primary metabolic process; GO:0045900,negative regulation of translational elongation;	--	NP_568447.1 30S ribosomal protein [Arabidopsis thaliana]	516	534	253	178
AT1G14150	no change	-0.7818597551364768	0.2707338193065854	0.6255751926812475	AT1G14150	--	GO:0005509,calcium ion binding; GO:0009344,nitrite reductase complex [NAD(P)H]; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity;	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901;	NP_563937.1 PsbQ-like 2 [Arabidopsis thaliana]	56	42	17	22
AT4G08930	no change	-0.9150474713705332	0.2707837482279197	0.6255751926812475	AT4G08930	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_192632.2 APR-like 6 [Arabidopsis thaliana]	38	26	16	18
AT2G45520	no change	0.6627941552549821	0.27087774551463056	0.6255751926812475	AT2G45520	--	GO:0008150,biological_process;	--	NP_566044.1 coiled-coil protein [Arabidopsis thaliana]	72	54	92	62
AT1G31950	no change	0.5856474923368387	0.2716152517194082	0.6267097149826781	AT1G31950	--	GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0008299,isoprenoid biosynthetic process; GO:0009975,cyclase activity; GO:0010333,terpene synthase activity; GO:0016102,diterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0046872,metal ion binding; GO:0051762,sesquiterpene biosynthetic process;	--	NP_001320347.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein [Arabidopsis thaliana]	54	43	47	31
AT3G07410	no change	0.718246575897485	0.2721312710879324	0.6273315986583224	AT3G07410	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane;	--	NP_187397.1 RAB GTPase homolog A5B [Arabidopsis thaliana]	94	76	79	66
AT4G38230	no change	-0.7955809948254391	0.27247990695162877	0.6275668445175522	AT4G38230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_195536.2 calcium-dependent protein kinase 26 [Arabidopsis thaliana]	53	29	17	11
AT1G13360	no change	0.4574046850403563	0.27293683740552976	0.6276002470881495	AT1G13360	--	GO:0071456,cellular response to hypoxia;	--	NP_001184983.1 hypothetical protein AT1G13360 [Arabidopsis thaliana]	231	206	237	128
AT1G14920	no change	0.626158512172708	0.27298761238765484	0.6276002470881495	AT1G14920	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006808,regulation of nitrogen utilization; GO:0009723,response to ethylene; GO:0009737,response to abscisic acid; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009938,negative regulation of gibberellic acid mediated signaling pathway; GO:0009939,positive regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010187,negative regulation of seed germination; GO:0010218,response to far red light; GO:0010233,phloem transport; GO:0010336,gibberellic acid homeostasis; GO:0010628,positive regulation of gene expression; GO:0010629,negative regulation of gene expression; GO:0033206,meiotic cytokinesis; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:1900033,negative regulation of trichome patterning; GO:1903508,positive regulation of nucleic acid-templated transcription; GO:1905614,negative regulation of developmental vegetative growth; GO:1905622,negative regulation of leaf development; GO:2000033,regulation of seed dormancy process; GO:2000377,regulation of reactive oxygen species metabolic process;	DELLA; DELLA protein; K14494;	NP_172945.1 GRAS family transcription factor family protein [Arabidopsis thaliana]	182	155	108	92
AT5G53810	no change	-1.3363704650648387	0.2732520120995954	0.6276410152986943	AT5G53810	--	GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0032259,methylation; GO:0046983,protein dimerization activity;	--	NP_200192.1 O-methyltransferase family protein [Arabidopsis thaliana]	13	16	4	5
AT5G57380	no change	-0.9947670609548817	0.2737726941259363	0.6276410152986943	AT5G57380	--	GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005677,chromatin silencing complex; GO:0006950,response to stress; GO:0009409,response to cold; GO:0010048,vernalization response; GO:0016607,nuclear speck; GO:0040029,epigenetic regulation of gene expression; GO:0045814,negative regulation of gene expression, epigenetic; GO:0046872,metal ion binding; GO:0051571,positive regulation of histone H3-K4 methylation; GO:0061087,positive regulation of histone H3-K27 methylation; GO:0070417,cellular response to cold;	--	NP_200548.2 Fibronectin type III domain-containing protein [Arabidopsis thaliana]	19	37	16	7
AT2G19170	no change	-0.35855106642	0.27403886088700885	0.6276410152986943	AT2G19170	--	GO:0004252,serine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity;	--	NP_001324171.1 subtilisin-like serine protease 3 [Arabidopsis thaliana]	198	164	111	99
AT3G52850	no change	-0.4196471716727359	0.2742249327377365	0.6276410152986943	AT3G52850	--	GO:0000139,Golgi membrane; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005768,endosome; GO:0005770,late endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0006623,protein targeting to vacuole; GO:0006896,Golgi to vacuole transport; GO:0007034,vacuolar transport; GO:0009940,amino-terminal vacuolar sorting propeptide binding; GO:0015031,protein transport; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0017119,Golgi transport complex; GO:0030665,clathrin-coated vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:0061630,ubiquitin protein ligase activity;	--	NP_190853.1 vacuolar sorting receptor homolog 1 [Arabidopsis thaliana]	1561	1334	1024	812
AT5G66055	no change	0.5539326437973857	0.2742384318318853	0.6276410152986943	AT5G66055	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0140693,molecular condensate scaffold activity;	--	NP_569027.2 ankyrin repeat protein [Arabidopsis thaliana]	139	95	96	88
AT5G13560	no change	-0.23783869053270812	0.2745380806298305	0.6277622778103492	AT5G13560	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009536,plastid;	--	NP_196860.2 structural maintenance of chromosomes protein [Arabidopsis thaliana]	527	459	305	275
AT1G31220	no change	0.7076368635286832	0.2754161474293631	0.6292047533283026	AT1G31220	--	GO:0004644,phosphoribosylglycinamide formyltransferase activity; GO:0005737,cytoplasm; GO:0006164,purine nucleotide biosynthetic process; GO:0006189,'de novo' IMP biosynthetic process; GO:0009058,biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0072522,purine-containing compound biosynthetic process;	E2.1.2.2; phosphoribosylglycinamide formyltransferase [EC:2.1.2.2]; K00601;	NP_174407.1 Formyl transferase [Arabidopsis thaliana]	40	26	26	28
AT1G11310	no change	0.4036104873565351	0.27646859502788407	0.6310426675748565	AT1G11310	--	GO:0005516,calmodulin binding; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009607,response to biotic stimulus; GO:0009620,response to fungus; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031348,negative regulation of defense response; GO:0050832,defense response to fungus;	--	NP_172598.1 Seven transmembrane MLO family protein [Arabidopsis thaliana]	471	341	273	236
AT5G62530	no change	-0.3959802473506091	0.27674788281083207	0.6311141234350964	AT5G62530	--	GO:0003842,1-pyrroline-5-carboxylate dehydrogenase activity; GO:0004029,aldehyde dehydrogenase (NAD+) activity; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006560,proline metabolic process; GO:0008270,zinc ion binding; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0010133,proline catabolic process to glutamate; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0050897,cobalt ion binding; GO:0072593,reactive oxygen species metabolic process;	E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]; K00294;	NP_568955.1 aldehyde dehydrogenase 12A1 [Arabidopsis thaliana]	318	348	288	220
AT1G69260	no change	-1.51998931973748	0.2776689572814364	0.6326477137701483	AT1G69260	--	GO:0005634,nucleus; GO:0007165,signal transduction; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_564956.1 ABI five binding protein [Arabidopsis thaliana]	15	8	1	10
AT2G23080	no change	-0.460514944929205	0.2780840127110291	0.6330266657867344	AT2G23080	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005956,protein kinase CK2 complex; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006468,protein phosphorylation; GO:0007623,circadian rhythm; GO:0010225,response to UV-C; GO:0010332,response to gamma radiation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0018107,peptidyl-threonine phosphorylation; GO:0042752,regulation of circadian rhythm; GO:0051726,regulation of cell cycle; GO:0106310,protein serine kinase activity; GO:2001020,regulation of response to DNA damage stimulus;	CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]; K03097;	NP_179890.1 Protein kinase superfamily protein [Arabidopsis thaliana]	78	101	81	50
AT5G59730	no change	0.5190238656532973	0.27913354237035004	0.6348479582953895	AT5G59730	--	GO:0000145,exocyst; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006887,exocytosis; GO:0015031,protein transport;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_200781.1 exocyst subunit exo70 family protein H7 [Arabidopsis thaliana]	304	330	174	171
AT5G18100	no change	0.6095806524204495	0.28043622520776046	0.6372412438872771	AT5G18100	--	GO:0000325,plant-type vacuole; GO:0004784,superoxide dismutase activity; GO:0005507,copper ion binding; GO:0005777,peroxisome; GO:0006801,superoxide metabolic process; GO:0006979,response to oxidative stress; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0019430,removal of superoxide radicals; GO:0046872,metal ion binding; GO:0071457,cellular response to ozone; GO:0071472,cellular response to salt stress; GO:0071484,cellular response to light intensity; GO:0071486,cellular response to high light intensity; GO:0071493,cellular response to UV-B; GO:0098869,cellular oxidant detoxification;	SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]; K04565;	NP_197311.1 copper/zinc superoxide dismutase 3 [Arabidopsis thaliana]	77	70	117	97
AT5G05690	no change	-0.6490486969553029	0.28115147727055334	0.638296618781051	AT5G05690	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0009911,positive regulation of flower development; GO:0010224,response to UV-B; GO:0010268,brassinosteroid homeostasis; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0048657,anther wall tapetum cell differentiation;	CYP90A1, CPD; cytochrome P450 family 90 subfamily A polypeptide 1 [EC:1.14.-.-]; K09588;	NP_196188.1 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	321	279	245	192
AT2G02450	no change	0.853142592404768	0.2814368423641037	0.6383750123142994	AT2G02450	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development;	--	NP_565284.3 NAC domain containing protein 35 [Arabidopsis thaliana]	20	26	16	19
AT5G51010	no change	0.4639285885087263	0.28190697189512515	0.6388719888451412	AT5G51010	--	GO:0005506,iron ion binding; GO:0009536,plastid; GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_568749.1 Rubredoxin-like superfamily protein [Arabidopsis thaliana]	67	74	68	63
AT1G51080	no change	0.831824084338681	0.2823454526682271	0.6392964208546601	AT1G51080	--	GO:0008150,biological_process; GO:0009536,plastid;	--	NP_175519.1 golgin family A protein [Arabidopsis thaliana]	20	20	19	22
AT3G11420	no change	-0.7295736989621009	0.28355692880130967	0.6414687855994072	AT3G11420	--	GO:0008375,acetylglucosaminyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_187749.1 beta-1,3-N-acetylglucosaminyltransferase lunatic protein, putative (DUF604) [Arabidopsis thaliana]	71	74	58	39
AT4G36730	no change	0.7756558787809258	0.2839382669982221	0.6417610031176512	AT4G36730	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_849510.1 G-box binding factor 1 [Arabidopsis thaliana]	18	25	26	24
AT3G04550	no change	-0.6581639013162555	0.28447800691709957	0.6424104060372835	AT3G04550	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_566230.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]	220	159	123	77
AT1G68010	no change	0.9061996910826764	0.28510297002963886	0.6424854218956308	AT1G68010	--	GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008266,poly(U) RNA binding; GO:0008465,glycerate dehydrogenase activity; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0042631,cellular response to water deprivation; GO:0048046,apoplast; GO:0051287,NAD binding; GO:0071482,cellular response to light stimulus;	HPR1; glycerate dehydrogenase [EC:1.1.1.29]; K15893;	NP_176968.1 hydroxypyruvate reductase [Arabidopsis thaliana]	908	954	458	336
AT5G62390	no change	-0.6498185691988461	0.2856966390706882	0.6424854218956308	AT5G62390	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0034605,cellular response to heat; GO:0034620,cellular response to unfolded protein; GO:0070417,cellular response to cold;	--	NP_201045.1 BCL-2-associated athanogene 7 [Arabidopsis thaliana]	603	624	339	281
AT5G06190	no change	0.7085233884096906	0.28586046970123796	0.6424854218956308	AT5G06190	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001190238.1 transmembrane protein [Arabidopsis thaliana]	39	37	29	15
AT3G27250	no change	1.3968218341721297	0.2859453938494317	0.6424854218956308	AT3G27250	--	GO:0005634,nucleus; GO:2000143,negative regulation of DNA-templated transcription initiation;	--	NP_001326277.1 hypothetical protein AT3G27250 [Arabidopsis thaliana]	8	7	8	6
AT5G58300	no change	0.8284022238308069	0.28645351112260947	0.6424854218956308	AT5G58300	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001119458.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	112	113	64	54
AT2G15320	no change	0.3291707209453967	0.2872124311542938	0.6424854218956308	AT2G15320	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0005886,plasma membrane;	--	NP_179134.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	284	217	183	149
AT3G29130	no change	1.4285390208095716	0.2872518747412119	0.6424854218956308	AT3G29130	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0032418,lysosome localization; GO:0042803,protein homodimerization activity; GO:0043621,protein self-association; GO:0099078,BORC complex;	--	NP_001326297.1 kxDL motif protein [Arabidopsis thaliana]	8	6	11	4
AT4G15550	no change	-0.40994505579368745	0.28727745362436347	0.6424854218956308	AT4G15550	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567471.1 indole-3-acetate beta-D-glucosyltransferase [Arabidopsis thaliana]	156	122	54	45
AT3G20680	no change	-0.5932414789167764	0.28760752549307916	0.6424854218956308	AT3G20680	--	GO:0005829,cytosol; GO:0009507,chloroplast;	--	NP_188704.1 plant/protein (DUF1995) [Arabidopsis thaliana]	76	85	43	32
AT1G53910	no change	0.6660505978626414	0.2876304996879951	0.6424854218956308	AT1G53910	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; GO:0016020,membrane; GO:0070483,detection of hypoxia; GO:2000280,regulation of root development;	--	NP_001031185.1 related to AP2 12 [Arabidopsis thaliana]	897	799	711	556
AT5G03910	no change	-0.41985378515624294	0.2877046943150361	0.6424854218956308	AT5G03910	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	--	NP_196011.1 ABC2 homolog 12 [Arabidopsis thaliana]	117	67	102	69
AT5G47435	no change	0.9773476490203024	0.28771035340108925	0.6424854218956308	AT5G47435	--	GO:0005739,mitochondrion; GO:0006189,'de novo' IMP biosynthetic process; GO:0006730,one-carbon metabolic process; GO:0008864,formyltetrahydrofolate deformylase activity; GO:0009058,biosynthetic process; GO:0009853,photorespiration; GO:0016787,hydrolase activity; GO:0046653,tetrahydrofolate metabolic process;	purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]; K01433;	NP_568682.1 formyltetrahydrofolate deformylase [Arabidopsis thaliana]	18	12	12	17
AT3G48170	no change	-0.5949999332623666	0.2879831459311084	0.6424854218956308	AT3G48170	--	GO:0004029,aldehyde dehydrogenase (NAD+) activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008802,betaine-aldehyde dehydrogenase activity; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019145,aminobutyraldehyde dehydrogenase activity; GO:0019285,glycine betaine biosynthetic process from choline; GO:0031402,sodium ion binding; GO:0046872,metal ion binding; GO:0047105,4-trimethylammoniobutyraldehyde dehydrogenase activity; GO:0047107,gamma-guanidinobutyraldehyde dehydrogenase activity; GO:0110095,cellular detoxification of aldehyde;	betB, gbsA; betaine-aldehyde dehydrogenase [EC:1.2.1.8]; K00130;	NP_190400.1 aldehyde dehydrogenase 10A9 [Arabidopsis thaliana]	434	443	273	179
AT5G10460	no change	0.6776087728694193	0.2882653595646783	0.6424854218956308	AT5G10460	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity;	--	NP_196608.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]	108	67	54	51
AT5G40150	no change	0.737068780106096	0.2885147897883645	0.6424854218956308	AT5G40150	--	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0006979,response to oxidative stress; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity;	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430;	NP_198831.1 Peroxidase superfamily protein [Arabidopsis thaliana]	103	100	63	64
AT5G13260	no change	-0.45995939432313104	0.2885504272010633	0.6424854218956308	AT5G13260	--	GO:0000911,cytokinesis by cell plate formation;	--	NP_196830.2 myosin [Arabidopsis thaliana]	177	153	108	127
AT1G34630	no change	0.9344888022057898	0.2891160965495113	0.6430592095853569	AT1G34630	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_174722.2 transmembrane protein [Arabidopsis thaliana]	23	13	31	8
AT5G48870	no change	0.5672083832882944	0.28932868747497065	0.6430592095853569	AT5G48870	--	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000398,mRNA splicing, via spliceosome; GO:0000932,P-body; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005688,U6 snRNP; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0120115,Lsm2-8 complex; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex;	LSM5; U6 snRNA-associated Sm-like protein LSm5; K12624;	NP_199698.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	87	101	76	48
AT3G04880	no change	-0.4033180547111339	0.2896104041343908	0.6430592095853569	AT3G04880	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0016853,isomerase activity;	--	NP_566241.1 DNA-damage-repair/toleration protein (DRT102) [Arabidopsis thaliana]	137	103	92	52
AT2G33060	no change	1.028888363127603	0.2898188264811019	0.6430592095853569	AT2G33060	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_180865.2 receptor like protein 27 [Arabidopsis thaliana]	12	12	9	22
AT1G70600	no change	-0.453784409692374	0.2912549677065333	0.6456828334609123	AT1G70600	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae; K02900;	NP_177217.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]	526	551	642	510
AT1G75290	no change	1.0044066687125124	0.29216246516336736	0.6471309606969278	AT1G75290	--	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_001321702.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	23	24	6	11
AT3G49670	no change	-0.4185919937810878	0.29267713463826545	0.6477072240472918	AT3G49670	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009755,hormone-mediated signaling pathway; GO:0009934,regulation of meristem structural organization; GO:0010075,regulation of meristem growth; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0048229,gametophyte development; GO:0048437,floral organ development; GO:0106310,protein serine kinase activity;	--	NP_190536.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	914	738	615	483
AT2G19710	no change	-0.7010616585784959	0.29296593909059804	0.647710243594384	AT2G19710	--	GO:0003674,molecular_function; GO:0008104,protein localization; GO:0015031,protein transport;	--	NP_179561.2 Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]	70	88	91	56
AT1G69690	no change	-0.45359175494064985	0.2931875051554933	0.647710243594384	AT1G69690	TCP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0009735,response to cytokinin; GO:0010229,inflorescence development; GO:0010252,auxin homeostasis; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0042023,DNA endoreduplication; GO:0043565,sequence-specific DNA binding; GO:0048467,gynoecium development; GO:0051301,cell division; GO:0080086,stamen filament development;	--	NP_564973.1 TCP family transcription factor [Arabidopsis thaliana]	170	121	108	75
AT3G03470	no change	0.5219406610529518	0.29372012830332006	0.6478738249887908	AT3G03470	--	GO:0003958,NADPH-hemoprotein reductase activity; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0015996,chlorophyll catabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0033310,chlorophyll a catabolic process; GO:0046872,metal ion binding; GO:0106371,fluorescent chlorophyll catabolite monooxygenase (deformylase) activity;	--	NP_186997.1 cytochrome P450, family 87, subfamily A, polypeptide 9 [Arabidopsis thaliana]	1273	990	983	687
AT5G35670	no change	-0.6119519823026414	0.29379465692677476	0.6478738249887908	AT5G35670	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_568529.1 IQ-domain 33 [Arabidopsis thaliana]	43	37	32	33
AT5G38210	no change	-0.5740558858756044	0.2942102833980323	0.6478738249887908	AT5G38210	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity;	--	NP_198637.2 Protein kinase family protein [Arabidopsis thaliana]	73	46	34	26
AT3G48120	no change	1.120173174570029	0.294279819916323	0.6478738249887908	AT3G48120	--	GO:0000380,alternative mRNA splicing, via spliceosome; GO:0000398,mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005737,cytoplasm;	--	NP_190395.3 serine/arginine-rich splicing factor [Arabidopsis thaliana]	15	9	10	10
AT3G24860	no change	-0.7007605601571285	0.29475917912799704	0.647883323094104	AT3G24860	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006970,response to osmotic stress; GO:0009651,response to salt stress; GO:0009755,hormone-mediated signaling pathway; GO:0010555,response to mannitol;	--	NP_189130.1 Homeodomain-like superfamily protein [Arabidopsis thaliana]	73	52	26	23
AT5G49560	no change	1.429861615595609	0.2948296168861216	0.647883323094104	AT5G49560	--	GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_199767.1 Putative methyltransferase family protein [Arabidopsis thaliana]	11	0	13	12
AT5G58320	no change	-1.0097127042475955	0.29504784733440725	0.647883323094104	AT5G58320	--	GO:0003779,actin binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005884,actin filament; GO:0016020,membrane; GO:0110165,cellular anatomical entity;	--	NP_001318828.1 Kinase interacting (KIP1-like) family protein [Arabidopsis thaliana]	21	25	6	9
AT1G54320	no change	-0.6499432242687089	0.29550230435329944	0.6480856149412006	AT1G54320	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0033036,macromolecule localization;	--	NP_564656.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]	168	170	136	98
AT3G62940	no change	0.5996284678745116	0.2956511745944222	0.6480856149412006	AT3G62940	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001325819.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	72	56	77	45
AT3G61460	no change	-0.4628531037487962	0.2959039232069451	0.6480856149412006	AT3G61460	--	GO:0008270,zinc ion binding; GO:0009741,response to brassinosteroid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010200,response to chitin; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:1901371,regulation of leaf morphogenesis; GO:1905421,regulation of plant organ morphogenesis;	--	NP_191705.1 brassinosteroid-responsive RING-H2 [Arabidopsis thaliana]	468	397	366	273
AT5G62770	no change	0.8431799844385672	0.29716449721417154	0.6498303283663253	AT5G62770	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_201083.1 membrane-associated kinase regulator, putative (DUF1645) [Arabidopsis thaliana]	25	22	33	37
AT1G20440	no change	-0.3187962966968474	0.29726293829060874	0.6498303283663253	AT1G20440	--	GO:0003674,molecular_function; GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006970,response to osmotic stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0010286,heat acclimation; GO:0016020,membrane; GO:0016151,nickel cation binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus;	--	NP_173468.1 cold-regulated 47 [Arabidopsis thaliana]	3558	3133	1845	1299
AT3G17100	no change	0.4764685332328602	0.29746653538183454	0.6498303283663253	AT3G17100	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity;	--	NP_566567.1 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	207	147	184	174
AT5G24500	no change	0.8245755844188913	0.2984803259457294	0.6514857886208244	AT5G24500	--	GO:0008150,biological_process;	--	NP_197838.2 fantom protein [Arabidopsis thaliana]	22	18	24	14
AT1G49960	no change	1.4932441615267251	0.29911703164580694	0.6520658740062365	AT1G49960	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071702,organic substance transport;	--	NP_175418.1 Xanthine/uracil permease family protein [Arabidopsis thaliana]	6	6	14	2
AT2G01080	no change	0.910931272363678	0.29925852292309796	0.6520658740062365	AT2G01080	--	GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_565250.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	22	18	10	19
AT5G40950	no change	0.7339438845823665	0.29981436356822816	0.6520776127454988	AT5G40950	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:1990904,ribonucleoprotein complex;	RP-L27, MRPL27, rpmA; large subunit ribosomal protein L27; K02899;	NP_198911.1 ribosomal protein large subunit 27 [Arabidopsis thaliana]	2727	1938	2050	1469
AT3G54920	no change	0.4802126233790398	0.30001809772578175	0.6520776127454988	AT3G54920	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0042547,cell wall modification involved in multidimensional cell growth; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	pel; pectate lyase [EC:4.2.2.2]; K01728;	NP_191052.2 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	296	278	219	164
AT1G24030	no change	-1.3036539053519896	0.3003523708099045	0.6520776127454988	AT1G24030	--	GO:0000166,nucleotide binding; GO:0000976,transcription cis-regulatory region binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173814.2 Protein kinase superfamily protein [Arabidopsis thaliana]	27	7	4	4
AT4G16310	no change	-0.3537118520736775	0.3004470602670216	0.6520776127454988	AT4G16310	--	GO:0005515,protein binding; GO:0006325,chromatin organization; GO:0006598,polyamine catabolic process; GO:0016491,oxidoreductase activity; GO:0046592,polyamine oxidase activity;	--	NP_001319957.1 LSD1-like 3 [Arabidopsis thaliana]	150	167	101	83
AT1G01730	no change	-0.6279571309488885	0.3005450057958625	0.6520776127454988	AT1G01730	--	GO:0008150,biological_process;	--	NP_563634.1 hypothetical protein AT1G01730 [Arabidopsis thaliana]	51	47	39	17
AT4G39190	no change	0.7960032013531091	0.3020770811640237	0.6548434170037822	AT4G39190	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_195630.1 nucleolar-like protein [Arabidopsis thaliana]	38	21	31	23
AT2G21540	no change	-0.3805079388630368	0.302467752066443	0.6551322800077425	AT2G21540	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009908,flower development; GO:0015031,protein transport; GO:0016020,membrane;	--	NP_001031389.1 SEC14-like 3 [Arabidopsis thaliana]	172	192	117	72
AT5G47770	no change	0.720289844979991	0.3027575936074936	0.6552024453495503	AT5G47770	--	GO:0004161,dimethylallyltranstransferase activity; GO:0004337,geranyltranstransferase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0006695,cholesterol biosynthetic process; GO:0008202,steroid metabolic process; GO:0008203,cholesterol metabolic process; GO:0008299,isoprenoid biosynthetic process; GO:0009536,plastid; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; GO:0033384,geranyl diphosphate biosynthetic process; GO:0045337,farnesyl diphosphate biosynthetic process; GO:0046872,metal ion binding;	FDPS; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]; K00787;	NP_199588.1 farnesyl diphosphate synthase 1 [Arabidopsis thaliana]	668	561	332	329
AT2G29630	no change	0.7233069990142589	0.305837266126477	0.6611057397955843	AT2G29630	--	GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010266,response to vitamin B1; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding;	thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]; K03147;	NP_001189634.1 thiaminC [Arabidopsis thaliana]	1025	1051	541	426
AT4G33240	no change	0.7872050639894148	0.3060049357482115	0.6611057397955843	AT4G33240	--	GO:0000166,nucleotide binding; GO:0000285,1-phosphatidylinositol-3-phosphate 5-kinase activity; GO:0005524,ATP binding; GO:0005768,endosome; GO:0007033,vacuole organization; GO:0009555,pollen development; GO:0010008,endosome membrane; GO:0010256,endomembrane system organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016307,phosphatidylinositol phosphate kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0044238,primary metabolic process; GO:0046488,phosphatidylinositol metabolic process; GO:0046854,phosphatidylinositol phosphate biosynthetic process; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process;	PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]; K00921;	NP_001190899.1 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A [Arabidopsis thaliana]	335	239	214	144
AT2G04030	no change	0.5117408977497186	0.3063534433860514	0.6611603166265851	AT2G04030	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009704,de-etiolation; GO:0009941,chloroplast envelope; GO:0010157,response to chlorate; GO:0015031,protein transport; GO:0016887,ATP hydrolysis activity; GO:0042803,protein homodimerization activity; GO:0045037,protein import into chloroplast stroma; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone;	HSP90B, TRA1; heat shock protein 90kDa beta; K09487;	NP_178487.1 Chaperone protein htpG family protein [Arabidopsis thaliana]	1797	1654	2745	1945
AT5G24680	no change	1.22353179269685	0.3067971999573148	0.6611603166265851	AT5G24680	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0010468,regulation of gene expression;	--	NP_197856.1 Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 [Arabidopsis thaliana]	11	4	9	11
AT5G04310	no change	-1.2314545917496815	0.3069319943647973	0.6611603166265851	AT5G04310	--	GO:0009664,plant-type cell wall organization; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding;	pel; pectate lyase [EC:4.2.2.2]; K01728;	NP_001318478.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	12	12	7	5
AT3G29320	no change	-0.4444258308566216	0.30706934941163994	0.6611603166265851	AT3G29320	--	GO:0003824,catalytic activity; GO:0004645,1,4-alpha-oligoglucan phosphorylase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005980,glycogen catabolic process; GO:0008152,metabolic process; GO:0008184,glycogen phosphorylase activity; GO:0009266,response to temperature stimulus; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0030170,pyridoxal phosphate binding; GO:0102250,linear malto-oligosaccharide phosphorylase activity; GO:0102499,SHG alpha-glucan phosphorylase activity;	PYG, glgP; glycogen phosphorylase [EC:2.4.1.1]; K00688;	NP_189578.1 Glycosyl transferase, family 35 [Arabidopsis thaliana]	1242	1269	918	646
AT5G28919	no change	-1.0286774565086834	0.3075459545481107	0.6615656409539162	AT5G28919	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001119297.1 hypothetical protein AT5G28919 [Arabidopsis thaliana]	17	17	15	5
AT5G13670	no change	-1.0973414363802938	0.3080190473680049	0.6615656409539162	AT5G13670	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_196871.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	19	18	5	5
AT4G36810	no change	-0.6138934137931606	0.3080374398940631	0.6615656409539162	AT4G36810	--	GO:0004161,dimethylallyltranstransferase activity; GO:0004311,farnesyltranstransferase activity; GO:0004337,geranyltranstransferase activity; GO:0004659,prenyltransferase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009513,etioplast; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0016117,carotenoid biosynthetic process; GO:0016740,transferase activity; GO:0033384,geranyl diphosphate biosynthetic process; GO:0033386,geranylgeranyl diphosphate biosynthetic process; GO:0043693,monoterpene biosynthetic process; GO:0045337,farnesyl diphosphate biosynthetic process; GO:0046872,metal ion binding;	GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; K13789;	NP_195399.1 geranylgeranyl pyrophosphate synthase 1 [Arabidopsis thaliana]	331	307	126	99
AT1G31150	no change	0.8087178248621711	0.3086952516897417	0.6618920626405078	AT1G31150	--	GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_174400.1 K-box region protein (DUF1985) [Arabidopsis thaliana]	62	37	46	41
AT4G35850	no change	-0.30566565994253425	0.30904016418956604	0.6618920626405078	AT4G35850	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_567990.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	432	368	251	244
AT1G53230	no change	1.177919576034137	0.30923133241467704	0.6618920626405078	AT1G53230	TCP	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0010150,leaf senescence; GO:0043565,sequence-specific DNA binding; GO:0048366,leaf development; GO:2000032,regulation of secondary shoot formation;	--	NP_001322492.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 [Arabidopsis thaliana]	10	11	6	11
AT4G26140	no change	0.5019851723862212	0.30923933454145525	0.6618920626405078	AT4G26140	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast;	--	NP_001329560.1 beta-galactosidase 12 [Arabidopsis thaliana]	74	59	49	31
AT4G17550	no change	-0.4363021967842844	0.3094898053211019	0.6618920626405078	AT4G17550	--	GO:0000325,plant-type vacuole; GO:0008643,carbohydrate transport; GO:0015760,glucose-6-phosphate transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055062,phosphate ion homeostasis; GO:0055085,transmembrane transport; GO:0061513,glucose 6-phosphate:inorganic phosphate antiporter activity;	--	NP_193488.2 Major facilitator superfamily protein [Arabidopsis thaliana]	133	106	69	41
AT2G42120	no change	-0.6079451886254006	0.31037028980418535	0.6630624152353809	AT2G42120	--	GO:0003677,DNA binding; GO:0003887,DNA-directed DNA polymerase activity; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0006260,DNA replication; GO:0006271,DNA strand elongation involved in DNA replication; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0042575,DNA polymerase complex; GO:0043625,delta DNA polymerase complex; GO:0071897,DNA biosynthetic process;	POLD2; DNA polymerase delta subunit 2; K02328;	NP_973664.1 DNA polymerase delta small subunit [Arabidopsis thaliana]	50	50	26	20
AT2G47690	no change	-0.5443936480797591	0.31055811354050056	0.6630624152353809	AT2G47690	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0005758,mitochondrial intermembrane space; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFS5; NADH dehydrogenase (ubiquinone) Fe-S protein 5; K03938;	NP_182291.1 NADH-ubiquinone oxidoreductase-like protein [Arabidopsis thaliana]	54	56	55	25
AT1G26100	no change	0.7251242492253587	0.31100608646169053	0.6634622716219635	AT1G26100	--	GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0055085,transmembrane transport; GO:0140571,transmembrane ascorbate ferrireductase activity;	--	NP_173935.1 Cytochrome b561/ferric reductase transmembrane protein family [Arabidopsis thaliana]	36	37	38	10
AT5G14720	no change	-0.5434856080637704	0.3112702546162698	0.6634696800656672	AT5G14720	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_001330554.1 Protein kinase superfamily protein [Arabidopsis thaliana]	182	160	126	95
AT4G08690	no change	0.6438240864707803	0.3116938867059693	0.6637194086679439	AT4G08690	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0008526,phosphatidylinositol transfer activity; GO:0015914,phospholipid transport; GO:0120009,intermembrane lipid transfer;	--	NP_001031598.1 Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]	40	34	46	17
AT5G52310	no change	0.6687497481300007	0.31190900305181174	0.6637194086679439	AT5G52310	--	GO:0000302,response to reactive oxygen species; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006970,response to osmotic stress; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0009609,response to symbiotic bacterium; GO:0009611,response to wounding; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0010150,leaf senescence; GO:0010555,response to mannitol; GO:0042538,hyperosmotic salinity response; GO:1902074,response to salt; GO:2000280,regulation of root development;	--	NP_200044.1 low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) [Arabidopsis thaliana]	2164	1904	1220	1056
AT1G52630	no change	0.7161031772739985	0.3124589375371315	0.6643341654402671	AT1G52630	--	GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_175672.2 O-fucosyltransferase family protein [Arabidopsis thaliana]	23	27	24	23
AT1G64080	no change	0.7431445533044609	0.3134213614693471	0.6658241777458168	AT1G64080	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_176591.1 membrane-associated kinase regulator [Arabidopsis thaliana]	41	33	32	32
AT5G10720	no change	-1.518758039647132	0.3145855344497757	0.6677399375935605	AT5G10720	--	GO:0000155,phosphorelay sensor kinase activity; GO:0000160,phosphorelay signal transduction system; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004673,protein histidine kinase activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007165,signal transduction; GO:0009736,cytokinin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0009927,histidine phosphotransfer kinase activity; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0018106,peptidyl-histidine phosphorylation; GO:0042221,response to chemical; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0048856,anatomical structure development; GO:0070301,cellular response to hydrogen peroxide; GO:0071219,cellular response to molecule of bacterial origin; GO:0071732,cellular response to nitric oxide; GO:0090333,regulation of stomatal closure;	--	NP_196633.2 histidine kinase 5 [Arabidopsis thaliana]	17	6	1	4
AT4G38180	no change	-0.6402070841776757	0.31597840967255386	0.6701375438472079	AT4G38180	FAR1	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_195531.1 FAR1-related sequence 5 [Arabidopsis thaliana]	47	42	48	14
AT3G50930	no change	0.6899221989406579	0.31740482592323244	0.6718250734322965	AT3G50930	--	GO:0000166,nucleotide binding; GO:0002237,response to molecule of bacterial origin; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005740,mitochondrial envelope; GO:0005741,mitochondrial outer membrane; GO:0006950,response to stress; GO:0006952,defense response; GO:0008219,cell death; GO:0009411,response to UV; GO:0009617,response to bacterium; GO:0009626,plant-type hypersensitive response; GO:0009863,salicylic acid mediated signaling pathway; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0042802,identical protein binding;	--	NP_190662.2 cytochrome BC1 synthesi [Arabidopsis thaliana]	24	33	22	31
AT5G58650	no change	-0.7562031368063735	0.3174629142345799	0.6718250734322965	AT5G58650	--	GO:0005576,extracellular region; GO:0007165,signal transduction; GO:0008083,growth factor activity; GO:0009658,chloroplast organization; GO:0042127,regulation of cell population proliferation;	--	NP_200673.1 plant peptide containing sulfated tyrosine 1 [Arabidopsis thaliana]	49	23	38	25
AT3G57720	no change	-1.0636248069507095	0.317668055924796	0.6718250734322965	AT3G57720	--	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane;	--	NP_191331.2 Protein kinase superfamily protein [Arabidopsis thaliana]	20	15	5	9
AT3G14440	no change	0.9010505456513904	0.3178300150933143	0.6718250734322965	AT3G14440	--	GO:0006970,response to osmotic stress; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009688,abscisic acid biosynthetic process; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0042538,hyperosmotic salinity response; GO:0045549,9-cis-epoxycarotenoid dioxygenase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840;	NP_188062.1 nine-cis-epoxycarotenoid dioxygenase 3 [Arabidopsis thaliana]	28	26	6	14
AT1G30540	no change	0.6878867043247476	0.3186051997178018	0.6729047579102122	AT1G30540	--	GO:0008150,biological_process; GO:0045127,N-acetylglucosamine kinase activity; GO:0046835,carbohydrate phosphorylation;	--	NP_564358.1 Actin-like ATPase superfamily protein [Arabidopsis thaliana]	49	35	16	16
AT5G02770	no change	0.6362335074234942	0.3189869310660671	0.6729169555781206	AT5G02770	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0051028,mRNA transport;	--	NP_195897.1 Protein MODIFIER OF SNC1 11 [Arabidopsis thaliana]	141	149	81	62
AT1G16570	no change	0.530870289103138	0.3191397899342992	0.6729169555781206	AT1G16570	--	GO:0000030,mannosyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0010483,pollen tube reception; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0048868,pollen tube development; GO:0097502,mannosylation;	ALG1; beta-1,4-mannosyltransferase [EC:2.4.1.142]; K03842;	NP_173105.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	77	62	81	48
AT3G55530	no change	0.6600790878495637	0.3194184164905295	0.6729469122254946	AT3G55530	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_191112.1 RING/U-box superfamily protein [Arabidopsis thaliana]	26	39	33	21
AT5G01560	no change	0.9172372711439288	0.31998780208464955	0.6735888803188033	AT5G01560	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195776.2 lectin receptor kinase a4.3 [Arabidopsis thaliana]	12	19	22	9
AT4G34050	no change	0.5604583428461005	0.32055790441213666	0.6742312948172626	AT4G34050	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009699,phenylpropanoid biosynthetic process; GO:0009805,coumarin biosynthetic process; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042409,caffeoyl-CoA O-methyltransferase activity; GO:0046872,metal ion binding;	E2.1.1.104; caffeoyl-CoA O-methyltransferase [EC:2.1.1.104]; K00588;	NP_001328048.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	1146	1075	737	564
AT2G27830	no change	-0.8843011096189919	0.3215444842165575	0.6755717851243018	AT2G27830	--	--	--	NP_565660.1 hypothetical protein AT2G27830 [Arabidopsis thaliana]	19	25	15	8
AT2G34420	no change	0.4334286083918357	0.3218469941835926	0.6755717851243018	AT2G34420	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_565786.1 photosystem II light harvesting complex protein B1B2 [Arabidopsis thaliana]	2578	2523	962	818
AT2G33320	no change	-0.6682619164347212	0.3219915816722114	0.6755717851243018	AT2G33320	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006952,defense response;	--	NP_180890.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	53	45	13	15
AT1G14000	no change	-0.4629923335788506	0.32283757657990103	0.676313512094656	AT1G14000	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004709,MAP kinase kinase kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0006468,protein phosphorylation; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009742,brassinosteroid mediated signaling pathway; GO:0010305,leaf vascular tissue pattern formation; GO:0010828,positive regulation of glucose transmembrane transport; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0071333,cellular response to glucose stimulus; GO:1902074,response to salt;	--	NP_172853.1 VH1-interacting kinase [Arabidopsis thaliana]	200	215	212	160
AT2G46380	no change	-0.7150212001371195	0.3229929264748566	0.676313512094656	AT2G46380	--	GO:0003674,molecular_function; GO:1900150,regulation of defense response to fungus;	--	NP_182161.3 extra-large G-like protein, putative (DUF3133) [Arabidopsis thaliana]	26	31	25	15
AT1G27310	no change	-0.4722879519434695	0.3234912685858449	0.676313512094656	AT1G27310	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0015031,protein transport; GO:0031267,small GTPase binding; GO:0044613,nuclear pore central transport channel; GO:0051028,mRNA transport;	--	NP_174051.1 nuclear transport factor 2A [Arabidopsis thaliana]	206	168	196	142
AT3G26590	no change	0.7618453093480397	0.3236045775432369	0.676313512094656	AT3G26590	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_001326875.1 MATE efflux family protein [Arabidopsis thaliana]	188	165	109	104
AT1G20400	no change	-1.2944162951655829	0.32371836289238565	0.676313512094656	AT1G20400	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_173465.1 hypothetical protein (DUF1204) [Arabidopsis thaliana]	15	6	3	10
AT2G21250	no change	-0.5292875617032902	0.3239395564807016	0.676313512094656	AT2G21250	--	GO:0004032,alditol:NADP+ 1-oxidoreductase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0047641,aldose-6-phosphate reductase (NADPH) activity;	--	NP_179721.1 NAD(P)-linked oxidoreductase superfamily protein [Arabidopsis thaliana]	679	557	345	279
AT3G18050	no change	-0.4873427276098532	0.32447082444310116	0.6764759706631119	AT3G18050	--	GO:0016020,membrane;	--	NP_566596.1 GPI-anchored protein [Arabidopsis thaliana]	239	189	126	118
AT5G23700	no change	-1.361912091044779	0.3245489823888643	0.6764759706631119	AT5G23700	--	GO:0000911,cytokinesis by cell plate formation; GO:0003674,molecular_function;	--	NP_001330555.1 coiled-coil protein [Arabidopsis thaliana]	9	11	13	1
AT3G47300	no change	-0.6002129275020387	0.32501163390040944	0.6768859314865319	AT3G47300	--	GO:0004791,thioredoxin-disulfide reductase activity; GO:0005789,endoplasmic reticulum membrane; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	SELENOT; thioredoxin reductase-like selenoprotein T; K22366;	NP_190314.2 SELT-like protein precursor [Arabidopsis thaliana]	57	46	33	23
AT4G26090	no change	-1.0767084193393686	0.3261929653369409	0.67849393537247	AT4G26090	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0016020,membrane; GO:0016045,detection of bacterium; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0098542,defense response to other organism;	RPS2; disease resistance protein RPS2; K13459;	NP_194339.1 NB-ARC domain-containing disease resistance protein [Arabidopsis thaliana]	20	16	7	4
AT1G11860	no change	0.5720971567849897	0.3264999876237796	0.67849393537247	AT1G11860	--	GO:0003729,mRNA binding; GO:0004047,aminomethyltransferase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0006546,glycine catabolic process; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0022626,cytosolic ribosome; GO:0048046,apoplast;	gcvT, AMT; aminomethyltransferase [EC:2.1.2.10]; K00605;	NP_001318983.1 Glycine cleavage T-protein family [Arabidopsis thaliana]	1786	1513	815	586
AT1G63980	no change	-0.6392601318633808	0.32658352488458775	0.67849393537247	AT1G63980	--	GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0042127,regulation of cell population proliferation; GO:0042254,ribosome biogenesis; GO:0042274,ribosomal small subunit biogenesis; GO:0090069,regulation of ribosome biogenesis;	--	NP_564820.1 D111/G-patch domain-containing protein [Arabidopsis thaliana]	93	77	91	58
AT1G55830	no change	-0.7044100303039844	0.32720222129700055	0.6792248394786838	AT1G55830	--	GO:0097602,cullin family protein binding; GO:2000060,positive regulation of ubiquitin-dependent protein catabolic process;	--	NP_001185244.1 coiled-coil protein [Arabidopsis thaliana]	32	28	26	21
AT1G72360	no change	-1.4214056333222622	0.327714336452074	0.6797334851430549	AT1G72360	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009723,response to ethylene; GO:0009873,ethylene-activated signaling pathway; GO:0034059,response to anoxia; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0071369,cellular response to ethylene stimulus; GO:0071454,cellular response to anoxia; GO:0071456,cellular response to hypoxia;	--	NP_001077812.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]	10	5	4	6
AT1G55160	no change	0.48915318872726754	0.328406282482189	0.6803032014925879	AT1G55160	--	GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_564677.1 WAS/WASL-interacting family protein [Arabidopsis thaliana]	85	42	60	39
AT2G38640	no change	1.092536530609495	0.3285236285400356	0.6803032014925879	AT2G38640	--	--	--	NP_181398.1 LURP-one-like protein (DUF567) [Arabidopsis thaliana]	15	7	11	8
AT5G20130	no change	0.7615916735315977	0.3288768728924259	0.6804769759281049	AT5G20130	--	GO:0003674,molecular_function; GO:0016779,nucleotidyltransferase activity;	--	NP_001332651.1 sulfate adenylyltransferase subunit [Arabidopsis thaliana]	33	55	13	29
AT2G24580	no change	0.667633649727442	0.3291423015196452	0.6804769759281049	AT2G24580	--	GO:0008115,sarcosine oxidase activity; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding;	PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7]; K00306;	NP_180034.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]	130	98	36	46
AT4G09750	no change	-0.4605629110208902	0.3298414135302028	0.6813309790584873	AT4G09750	--	GO:0005829,cytosol;	DHRS12; dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-]; K11168;	NP_192713.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	100	81	68	47
AT5G03140	no change	1.031118561237122	0.33042053678013467	0.6813309790584873	AT5G03140	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195934.1 Concanavalin A-like lectin protein kinase family protein [Arabidopsis thaliana]	20	31	16	5
AT1G26300	no change	0.6759556706261876	0.3305765700330177	0.6813309790584873	AT1G26300	--	GO:0005575,cellular_component;	--	NP_173954.2 BSD domain-containing protein [Arabidopsis thaliana]	114	58	52	68
AT1G70340	no change	0.727444926609305	0.3314442875205322	0.6813309790584873	AT1G70340	--	GO:0003674,molecular_function; GO:0005874,microtubule; GO:0008150,biological_process;	--	NP_177191.1 dicer-like protein (DUF936) [Arabidopsis thaliana]	29	14	23	24
AT3G12650	no change	0.8024294672789942	0.33159638476710035	0.6813309790584873	AT3G12650	--	GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_566431.1 transmembrane protein [Arabidopsis thaliana]	34	42	54	41
AT3G53510	no change	-0.4709685247185149	0.3316490087389877	0.6813309790584873	AT3G53510	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1903825,organic acid transmembrane transport;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_190919.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	145	78	29	40
AT5G10695	no change	-0.9322076554636975	0.3316709402244679	0.6813309790584873	AT5G10695	--	--	--	NP_568234.1 methionyl-tRNA synthetase [Arabidopsis thaliana]	26	16	6	15
AT5G22840	no change	0.5409677642988928	0.3316970856791614	0.6813309790584873	AT5G22840	--	GO:0000166,nucleotide binding; GO:0000245,spliceosomal complex assembly; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0050684,regulation of mRNA processing;	--	NP_197675.1 Protein kinase superfamily protein [Arabidopsis thaliana]	47	47	48	25
AT3G10860	no change	-0.4465691370807896	0.3320644370973235	0.6815354777521678	AT3G10860	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005750,mitochondrial respiratory chain complex III; GO:0005829,cytosol; GO:0006122,mitochondrial electron transport, ubiquinol to cytochrome c; GO:0016020,membrane; GO:0070469,respirasome;	--	NP_001327236.1 Cytochrome b-c1 complex, subunit 8 protein [Arabidopsis thaliana]	261	257	173	142
AT4G02405	no change	-0.5921961712097081	0.3326506651908766	0.6821885116122329	AT4G02405	--	GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_974502.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	37	41	39	21
AT2G36800	no change	-0.9362234992587836	0.33299268402517584	0.6823400811949055	AT2G36800	--	GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016020,membrane; GO:0016131,brassinosteroid metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046527,glucosyltransferase activity; GO:0050403,trans-zeatin O-beta-D-glucosyltransferase activity; GO:0050502,cis-zeatin O-beta-D-glucosyltransferase activity; GO:0071456,cellular response to hypoxia; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0098754,detoxification;	UGT73C; UDP-glucosyltransferase 73C [EC:2.4.1.-]; K13496;	NP_181218.1 don-glucosyltransferase 1 [Arabidopsis thaliana]	28	18	7	17
AT2G01340	no change	0.8189308597511022	0.3334207872301785	0.6826676617061981	AT2G01340	--	GO:0005575,cellular_component; GO:0009620,response to fungus; GO:0009624,response to nematode;	--	NP_178243.2 plastid movement impaired protein [Arabidopsis thaliana]	14	15	22	15
AT5G63800	no change	0.2428777434679814	0.33410223866582484	0.6835130204216433	AT5G63800	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0009827,plant-type cell wall modification; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast; GO:0048354,mucilage biosynthetic process involved in seed coat development;	--	NP_568978.2 Glycosyl hydrolase family 35 protein [Arabidopsis thaliana]	342	372	277	222
AT3G61800	no change	0.6458284277449593	0.33449537990050693	0.6837676641339681	AT3G61800	--	GO:0000993,RNA polymerase II complex binding; GO:0005694,chromosome; GO:0006283,transcription-coupled nucleotide-excision repair; GO:0009411,response to UV;	--	NP_001326668.1 ENTH/VHS protein [Arabidopsis thaliana]	45	31	35	18
AT3G59030	no change	-1.1347282769642568	0.335294821381098	0.6839291321139069	AT3G59030	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009705,plant-type vacuole membrane; GO:0009813,flavonoid biosynthetic process; GO:0010023,proanthocyanidin biosynthetic process; GO:0010231,maintenance of seed dormancy; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_191462.1 MATE efflux family protein [Arabidopsis thaliana]	20	13	4	5
AT2G36400	no change	-0.7002959150016057	0.3356225184020003	0.6839291321139069	AT2G36400	GRF	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0008285,negative regulation of cell population proliferation; GO:0009409,response to cold; GO:0009624,response to nematode; GO:0009739,response to gibberellin; GO:0032502,developmental process; GO:0048364,root development; GO:0061062,regulation of nematode larval development; GO:0099402,plant organ development;	--	NP_181181.1 growth-regulating factor 3 [Arabidopsis thaliana]	44	47	27	33
AT1G07130	no change	-1.017069279987437	0.33588164667772324	0.6839291321139069	AT1G07130	--	GO:0000781,chromosome, telomeric region; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0016233,telomere capping;	--	NP_563781.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	22	14	16	3
AT1G15190	no change	-1.4397960993277152	0.33617462973412715	0.6839291321139069	AT1G15190	--	GO:0005576,extracellular region;	--	NP_172971.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]	11	7	3	4
AT3G01360	no change	-0.508304235028497	0.3365445401277932	0.6839291321139069	AT3G01360	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001030617.1 plant viral-response family protein (DUF716) [Arabidopsis thaliana]	59	69	55	24
AT1G07720	no change	0.6784830445859455	0.336804401438415	0.6839291321139069	AT1G07720	--	GO:0005783,endoplasmic reticulum; GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_001322003.1 3-ketoacyl-CoA synthase 3 [Arabidopsis thaliana]	310	219	135	127
AT4G27240	no change	0.8425627198397976	0.3370054569832721	0.6839291321139069	AT4G27240	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_567769.1 zinc finger (C2H2 type) family protein [Arabidopsis thaliana]	29	19	15	19
AT2G32640	no change	-0.7349518902824403	0.3371707867116152	0.6839291321139069	AT2G32640	--	GO:0009507,chloroplast;	--	NP_180823.3 Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]	45	64	32	16
AT1G74580	no change	-0.7696482523609252	0.33783114344326226	0.6839291321139069	AT1G74580	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_001322154.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	16	23	20	17
AT1G23090	no change	0.5850770976166313	0.33794736991212937	0.6839291321139069	AT1G23090	--	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_173722.1 sulfate transporter 91 [Arabidopsis thaliana]	103	101	90	92
AT5G08390	no change	-0.545801122939289	0.3380402770784646	0.6839291321139069	AT5G08390	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007019,microtubule depolymerization; GO:0008017,microtubule binding; GO:0008352,katanin complex; GO:0015630,microtubule cytoskeleton; GO:0051013,microtubule severing; GO:0051510,regulation of unidimensional cell growth; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	--	NP_568194.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	52	47	31	26
AT4G38490	no change	-0.6747897534877492	0.3381162714709118	0.6839291321139069	AT4G38490	--	GO:0005515,protein binding; GO:0006605,protein targeting; GO:0006886,intracellular protein transport; GO:0009528,plastid inner membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0071806,protein transmembrane transport; GO:0090351,seedling development;	--	NP_568043.1 transmembrane protein [Arabidopsis thaliana]	38	36	27	11
AT5G56950	no change	-0.6199650925487727	0.3381318940443215	0.6839291321139069	AT5G56950	--	GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0009536,plastid; GO:0016444,somatic cell DNA recombination; GO:0042393,histone binding; GO:0042802,identical protein binding;	--	NP_568844.1 nucleosome assembly protein 1;3 [Arabidopsis thaliana]	254	203	169	170
AT5G35735	no change	0.5318475287450939	0.3383366512107697	0.6839291321139069	AT5G35735	--	GO:0016020,membrane; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_568531.1 Auxin-responsive family protein [Arabidopsis thaliana]	46	40	44	29
AT4G14430	no change	-0.46032507591743066	0.33885433130545173	0.6844319628352179	AT4G14430	--	GO:0003824,catalytic activity; GO:0004165,delta(3)-delta(2)-enoyl-CoA isomerase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0009062,fatty acid catabolic process; GO:0016853,isomerase activity; GO:0048767,root hair elongation; GO:0080024,indolebutyric acid metabolic process; GO:0080026,response to indolebutyric acid;	ECI1_2; Delta3-Delta2-enoyl-CoA isomerase [EC:5.3.3.8]; K07517;	NP_193179.1 indole-3-butyric acid response 10 [Arabidopsis thaliana]	378	255	179	171
AT4G31230	no change	-1.170677716966395	0.33984808221720747	0.6857075485294489	AT4G31230	--	GO:0003729,mRNA binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0010053,root epidermal cell differentiation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016787,hydrolase activity;	--	NP_194851.2 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana]	14	9	7	5
AT2G35370	no change	0.5788519010952999	0.3400247254397503	0.6857075485294489	AT2G35370	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005960,glycine cleavage complex; GO:0009249,protein lipoylation; GO:0009579,thylakoid; GO:0019464,glycine decarboxylation via glycine cleavage system;	gcvH, GCSH; glycine cleavage system H protein; K02437;	NP_181080.1 glycine decarboxylase complex H [Arabidopsis thaliana]	325	340	166	112
AT1G28550	no change	-1.0725838395657128	0.3408626122340605	0.6868530072333207	AT1G28550	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis;	--	NP_174177.1 RAB GTPase homolog A1I [Arabidopsis thaliana]	27	7	5	11
AT3G07170	no change	0.5305437017959393	0.3413286574643358	0.6868968275357206	AT3G07170	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing;	--	NP_566300.1 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	85	56	81	77
AT5G01980	no change	-0.698767561842077	0.34142415985567254	0.6868968275357206	AT5G01980	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_195818.1 RING/U-box superfamily protein [Arabidopsis thaliana]	37	30	15	15
AT3G12300	no change	0.836134649705004	0.34198066198707155	0.6869858016190792	AT3G12300	--	--	--	NP_566418.1 cilia/flagella-associated protein [Arabidopsis thaliana]	18	11	14	21
AT1G48310	no change	-0.6053664685864337	0.34200825565869286	0.6869858016190792	AT1G48310	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0031297,replication fork processing; GO:0036310,ATP-dependent DNA/DNA annealing activity; GO:0043596,nuclear replication fork; GO:0048478,replication fork protection; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_175265.3 chromatin remodeling factor18 [Arabidopsis thaliana]	43	39	32	16
AT2G37630	no change	-0.5270885666088052	0.34262035492884635	0.6876725578027714	AT2G37630	MYB	GO:0000793,condensed chromosome; GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008356,asymmetric cell division; GO:0009615,response to virus; GO:0009908,flower development; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0009946,proximal/distal axis specification; GO:0009965,leaf morphogenesis; GO:0010338,leaf formation; GO:0042742,defense response to bacterium; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0045088,regulation of innate immune response; GO:0045892,negative regulation of DNA-templated transcription; GO:0050832,defense response to fungus;	--	NP_181299.1 myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]	70	58	24	40
AT2G30360	no change	0.6275322450373153	0.343149847068206	0.6881925616931318	AT2G30360	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0009268,response to pH; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050896,response to stimulus; GO:0051592,response to calcium ion; GO:0106310,protein serine kinase activity;	--	NP_180595.1 SOS3-interacting protein 4 [Arabidopsis thaliana]	93	85	50	45
AT5G02520	no change	-0.8686886784092049	0.3438143841197019	0.688982368176883	AT5G02520	--	GO:0000775,chromosome, centromeric region; GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0007049,cell cycle; GO:0010369,chromocenter; GO:0016604,nuclear body; GO:0051301,cell division; GO:0051321,meiotic cell cycle;	--	NP_568101.4 dentin sialophosphoprotein-like protein [Arabidopsis thaliana]	34	24	20	3
AT2G01755	no change	1.386246658714381	0.34441173826460436	0.6896364074613832	AT2G01755	--	GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_001323453.1 hypothetical protein AT2G01755 [Arabidopsis thaliana]	12	4	5	5
AT3G09790	no change	1.2440175465682657	0.3459271091205568	0.6916078157221178	AT3G09790	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009505,plant-type cell wall; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	NP_001319513.1 ubiquitin 8 [Arabidopsis thaliana]	14	7	7	4
AT4G14090	no change	0.8635221618647808	0.34608322966068134	0.6916078157221178	AT4G14090	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009698,phenylpropanoid metabolic process; GO:0009718,anthocyanin-containing compound biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0080018,anthocyanin 5-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT75C1; anthocyanidin 3-O-glucoside 5-O-glucosyltransferase [EC:2.4.1.298]; K12338;	AAL69494.1 putative glucosyltransferase, partial [Arabidopsis thaliana]	12	19	18	11
AT2G23945	no change	-1.3813150283255915	0.34621153525735876	0.6916078157221178	AT2G23945	--	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity;	--	NP_565559.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	8	11	3	4
AT3G55040	no change	-0.5680875066888706	0.3472014105625281	0.6930412469659876	AT3G55040	--	GO:0004364,glutathione transferase activity; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009636,response to toxic substance; GO:0010731,protein glutathionylation; GO:0016740,transferase activity;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_191064.1 glutathione transferase lambda 2 [Arabidopsis thaliana]	102	95	51	36
AT5G46430	no change	0.6784850456332823	0.348278869510421	0.6946471182633396	AT5G46430	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex;	RP-L32e, RPL32; large subunit ribosomal protein L32e; K02912;	NP_199455.1 Ribosomal protein L32e [Arabidopsis thaliana]	279	325	261	250
AT1G49720	no change	0.5163082621324238	0.3491976265237198	0.6950628967887527	AT1G49720	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009738,abscisic acid-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription;	ABF; ABA responsive element binding factor; K14432;	NP_001322564.1 abscisic acid responsive element-binding factor 1 [Arabidopsis thaliana]	62	63	58	20
AT1G05840	no change	0.6930744143026963	0.34963955447919715	0.6950628967887527	AT1G05840	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity;	--	NP_563751.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	203	176	149	139
AT3G11620	no change	0.6310535298921369	0.35020125834476007	0.6950628967887527	AT3G11620	--	GO:0005811,lipid droplet; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0019915,lipid storage;	--	NP_001327052.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	26	30	27	24
AT5G27330	no change	0.3819890257547103	0.3503382504326802	0.6950628967887527	AT5G27330	--	GO:0000137,Golgi cis cisterna; GO:0003735,structural constituent of ribosome; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0016020,membrane;	--	NP_198085.1 Prefoldin chaperone subunit family protein [Arabidopsis thaliana]	98	127	122	76
AT1G77120	no change	0.5694470869574388	0.35046027869905	0.6950628967887527	AT1G77120	--	GO:0000166,nucleotide binding; GO:0001666,response to hypoxia; GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006970,response to osmotic stress; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009413,response to flooding; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0031000,response to caffeine; GO:0032355,response to estradiol; GO:0042542,response to hydrogen peroxide; GO:0042803,protein homodimerization activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity; GO:0071456,cellular response to hypoxia; GO:1900039,positive regulation of cellular response to hypoxia;	ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1]; K18857;	NP_177837.1 alcohol dehydrogenase 1 [Arabidopsis thaliana]	125	161	64	97
AT3G57300	no change	-0.6089261994623794	0.3506911222901289	0.6950628967887527	AT3G57300	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006338,chromatin remodeling; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006974,cellular response to DNA damage stimulus; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016444,somatic cell DNA recombination; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0031011,Ino80 complex; GO:0042393,histone binding; GO:0043618,regulation of transcription from RNA polymerase II promoter in response to stress; GO:0045739,positive regulation of DNA repair; GO:0140658,ATP-dependent chromatin remodeler activity;	--	NP_001319776.1 DNA helicase INO80-like protein [Arabidopsis thaliana]	219	178	112	121
AT2G23090	no change	0.46253026491418225	0.3507955875464861	0.6950628967887527	AT2G23090	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_565547.1 Uncharacterized protein family SERF [Arabidopsis thaliana]	150	208	235	169
AT3G04870	no change	0.4430835613489954	0.35088984871911394	0.6950628967887527	AT3G04870	--	GO:0009507,chloroplast; GO:0009509,chromoplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016117,carotenoid biosynthetic process; GO:0016120,carotene biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016719,carotene 7,8-desaturase activity; GO:0052886,9,9'-dicis-carotene:quinone oxidoreductase activity; GO:0052887,7,9,9'-tricis-neurosporene:quinone oxidoreductase activity; GO:0052889,9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene; GO:1901177,lycopene biosynthetic process;	ZDS, crtQ; zeta-carotene desaturase [EC:1.3.5.6]; K00514;	NP_001319473.1 zeta-carotene desaturase [Arabidopsis thaliana]	292	285	288	174
AT5G62170	no change	-0.6531111127687588	0.3510118501984109	0.6950628967887527	AT5G62170	--	--	--	NP_201023.1 LOW protein: M-phase inducer phosphatase-like protein [Arabidopsis thaliana]	36	40	21	22
AT3G16510	no change	-1.02492885267816	0.35121842250307894	0.6950628967887527	AT3G16510	--	GO:0006952,defense response;	--	NP_188272.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	9	11	11	9
AT4G03415	no change	0.35950799760333396	0.3516464986647614	0.695330249081851	AT4G03415	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0046872,metal ion binding;	--	NP_001190668.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	155	132	99	68
AT5G19120	no change	0.6405724150839713	0.3520515139501956	0.695330249081851	AT5G19120	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0071456,cellular response to hypoxia;	--	NP_197413.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	277	261	222	187
AT5G06320	no change	-0.5509414144850826	0.35217315955461925	0.695330249081851	AT5G06320	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009751,response to salicylic acid; GO:0016020,membrane; GO:0042742,defense response to bacterium; GO:0051607,defense response to virus; GO:0071456,cellular response to hypoxia; GO:0098542,defense response to other organism;	--	NP_196250.1 NDR1/HIN1-like 3 [Arabidopsis thaliana]	199	118	96	133
AT4G01840	no change	-0.7033717141126559	0.3525549406770864	0.6955444372272751	AT4G01840	--	GO:0005267,potassium channel activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009705,plant-type vacuole membrane; GO:0015271,outward rectifier potassium channel activity; GO:0016020,membrane; GO:0022841,potassium ion leak channel activity; GO:0030322,stabilization of membrane potential; GO:0046872,metal ion binding; GO:0071805,potassium ion transmembrane transport;	--	NP_192093.1 Ca2+ activated outward rectifying K+ channel 5 [Arabidopsis thaliana]	20	29	31	17
AT3G61160	no change	1.0735605499892529	0.3532861428951856	0.6958916477735172	AT3G61160	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity;	--	NP_001326846.1 Protein kinase superfamily protein [Arabidopsis thaliana]	4	11	11	12
AT2G05790	no change	-0.5165218265630234	0.3534563777308286	0.6958916477735172	AT2G05790	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_178637.2 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	1039	1127	796	589
AT3G16785	no change	-0.6124311282747268	0.35374513260152574	0.6958916477735172	AT3G16785	--	GO:0003824,catalytic activity; GO:0004630,phospholipase D activity; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006654,phosphatidic acid biosynthetic process; GO:0008610,lipid biosynthetic process; GO:0009395,phospholipid catabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0031410,cytoplasmic vesicle; GO:0048017,inositol lipid-mediated signaling; GO:0048364,root development; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_001326710.1 phospholipase D P1 [Arabidopsis thaliana]	110	85	57	54
AT1G47410	no change	-1.422773377278041	0.3539003492189161	0.6958916477735172	AT1G47410	--	GO:0008150,biological_process;	--	NP_001185160.1 hypothetical protein AT1G47410 [Arabidopsis thaliana]	7	11	3	3
AT3G05200	no change	-0.6463092611838306	0.35411946996035415	0.6958916477735172	AT3G05200	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_566249.1 RING/U-box superfamily protein [Arabidopsis thaliana]	44	41	22	19
AT4G10120	no change	0.6629901815918942	0.3543715424418382	0.6958916477735172	AT4G10120	--	GO:0005829,cytosol; GO:0005985,sucrose metabolic process; GO:0005986,sucrose biosynthetic process; GO:0016157,sucrose synthase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0046524,sucrose-phosphate synthase activity;	E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]; K00696;	NP_001031609.1 Sucrose-phosphate synthase family protein [Arabidopsis thaliana]	147	155	87	92
AT1G34420	no change	1.2447228571790223	0.3549804619992206	0.6965499427818169	AT1G34420	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	CAD5314472.1 unnamed protein product [Arabidopsis thaliana]	11	5	5	8
AT3G10220	no change	-0.3643788173871485	0.3557139779112077	0.6967141504550408	AT3G10220	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009524,phragmoplast; GO:0009793,embryo development ending in seed dormancy; GO:0051301,cell division;	--	NP_187633.2 tubulin folding cofactor B [Arabidopsis thaliana]	117	133	81	65
AT5G01750	no change	-0.3476946185664067	0.35571765091422464	0.6967141504550408	AT5G01750	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0019904,protein domain specific binding;	--	NP_568095.1 LURP-one-like protein (DUF567) [Arabidopsis thaliana]	463	330	212	183
AT1G03230	no change	0.620411124517739	0.3558854206646574	0.6967141504550408	AT1G03230	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity;	--	NP_563679.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	88	64	47	37
AT3G25020	no change	-0.8299179126326859	0.3561910784829393	0.6967765524512533	AT3G25020	--	GO:0002238,response to molecule of fungal origin; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0016020,membrane; GO:1900150,regulation of defense response to fungus; GO:1902288,regulation of defense response to oomycetes;	--	NP_189138.1 receptor like protein 42 [Arabidopsis thaliana]	17	31	10	11
AT4G31810	no change	0.5322850032065247	0.35671489624424985	0.6968479684914264	AT4G31810	--	GO:0003860,3-hydroxyisobutyryl-CoA hydrolase activity; GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0016787,hydrolase activity;	HIBCH; 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4]; K05605;	NP_194909.2 ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]	85	78	85	82
AT4G10750	no change	-0.3362758887442352	0.3567901613717517	0.6968479684914264	AT4G10750	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009536,plastid; GO:0016832,aldehyde-lyase activity; GO:0043231,intracellular membrane-bounded organelle;	--	NP_192813.1 Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]	286	249	300	209
AT5G24810	no change	0.47693853796589103	0.3570490180404008	0.6968479684914264	AT5G24810	--	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus;	--	NP_568458.1 ABC1 family protein [Arabidopsis thaliana]	214	239	143	114
AT1G29920	no change	0.3029419003277809	0.3583406104793711	0.6982460558345878	AT1G29920	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009750,response to fructose; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; GO:0048046,apoplast;	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912;	NP_564339.1 chlorophyll A/B binding protein 3 [Arabidopsis thaliana]	1374	801	738	523
AT5G20635	no change	0.942299107427365	0.35914756802949976	0.6982460558345878	AT5G20635	--	GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009737,response to abscisic acid;	--	NP_680175.2 guanine nucleotide-binding protein subunit gamma [Arabidopsis thaliana]	15	15	23	4
AT5G55700	no change	0.3810792078516352	0.35915359267673524	0.6982460558345878	AT5G55700	--	GO:0000272,polysaccharide catabolic process; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016161,beta-amylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102229,amylopectin maltohydrolase activity;	--	NP_568829.2 beta-amylase 4 [Arabidopsis thaliana]	77	96	76	58
AT5G01920	no change	0.4273335811360033	0.3592517632261004	0.6982460558345878	AT5G01920	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042549,photosystem II stabilization; GO:0106310,protein serine kinase activity;	--	BAC41802.1 unknown protein [Arabidopsis thaliana]	301	248	184	182
AT2G37975	no change	-0.7096893633379828	0.3600075882160089	0.6982460558345878	AT2G37975	--	GO:0000139,Golgi membrane; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0030134,COPII-coated ER to Golgi transport vesicle;	--	NP_001318371.1 Yos1-like protein [Arabidopsis thaliana]	18	20	25	17
AT1G18030	no change	-1.042922941177128	0.36014522747360594	0.6982460558345878	AT1G18030	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding;	--	NP_001077557.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	18	8	11	4
AT4G32730	no change	0.7318424776474828	0.3605644195056777	0.6982460558345878	AT4G32730	MYB	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0008285,negative regulation of cell population proliferation; GO:0032465,regulation of cytokinesis; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0070176,DRM complex; GO:1901181,negative regulation of cellular response to caffeine;	--	NP_001328944.1 Homeodomain-like protein [Arabidopsis thaliana]	49	43	46	33
AT3G12940	no change	0.741024516165032	0.3606350682790967	0.6982460558345878	AT3G12940	--	GO:0008150,biological_process;	--	NP_001326289.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	18	17	20	17
AT3G62660	no change	0.40733401176961426	0.3607558703743474	0.6982460558345878	AT3G62660	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	--	NP_191825.2 galacturonosyltransferase-like 7 [Arabidopsis thaliana]	79	73	66	41
AT1G16560	no change	-0.436613712695844	0.3609675739610431	0.6982460558345878	AT1G16560	--	GO:0000139,Golgi membrane; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0006506,GPI anchor biosynthetic process; GO:0016020,membrane; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_001319020.1 Per1-like family protein [Arabidopsis thaliana]	228	202	144	99
AT1G23390	no change	-0.508533945083153	0.361167553491675	0.6982460558345878	AT1G23390	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process;	--	NP_564193.1 Kelch repeat-containing F-box family protein [Arabidopsis thaliana]	106	121	54	35
AT3G01350	no change	-1.0075941362983514	0.3612890901451053	0.6982460558345878	AT3G01350	--	GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_186784.1 Major facilitator superfamily protein [Arabidopsis thaliana]	22	13	8	4
AT4G39235	no change	0.7497206575633317	0.3616023097975312	0.6982460558345878	AT4G39235	--	GO:0008150,biological_process;	--	NP_001328086.1 hypothetical protein AT4G39235 [Arabidopsis thaliana]	48	32	27	48
AT1G22510	no change	-0.8978977600727163	0.361719660315062	0.6982460558345878	AT1G22510	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_001185064.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]	24	21	18	3
AT4G14900	no change	-0.24933308173593893	0.36239013107817114	0.6982460558345878	AT4G14900	--	GO:0005515,protein binding; GO:0009908,flower development; GO:0030154,cell differentiation;	--	NP_567447.1 FRIGIDA-like protein [Arabidopsis thaliana]	276	213	146	109
AT3G02700	no change	0.5305473985592508	0.36271356453446146	0.6982460558345878	AT3G02700	--	GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_566181.1 NC domain-containing protein-like protein [Arabidopsis thaliana]	52	45	26	32
AT3G07570	no change	-0.6106205773202209	0.3629024274715704	0.6982460558345878	AT3G07570	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_566313.2 Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein [Arabidopsis thaliana]	48	59	51	23
AT4G16440	no change	-0.5248848762345943	0.3629571932255725	0.6982460558345878	AT4G16440	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0070482,response to oxygen levels;	--	CAD5328120.1 unnamed protein product [Arabidopsis thaliana]	89	95	76	45
AT4G14120	no change	0.8674169244662568	0.36297820505664424	0.6982460558345878	AT4G14120	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_193148.2 hypothetical protein AT4G14120 [Arabidopsis thaliana]	40	19	13	15
AT5G08270	no change	-0.8713197628759559	0.3636548061123838	0.6990192458882303	AT5G08270	--	--	--	NP_196444.1 C5orf35 [Arabidopsis thaliana]	23	26	11	4
AT2G43760	no change	0.5183501382295823	0.36406043286719136	0.6992707936958505	AT2G43760	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0019008,molybdopterin synthase complex; GO:0030366,molybdopterin synthase activity;	MOCS2B, moaE; molybdopterin synthase catalytic subunit [EC:2.8.1.12]; K03635;	NP_001078051.1 molybdopterin biosynthesis MoaE family protein [Arabidopsis thaliana]	74	60	64	45
AT2G39480	no change	0.616290707172146	0.36440756849192857	0.699302757674126	AT2G39480	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658;	AAM19777.1 At2g39480/F12L6.14 [Arabidopsis thaliana]	178	122	128	68
AT4G27030	no change	0.6873768115496439	0.3646266245318527	0.699302757674126	AT4G27030	--	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006636,unsaturated fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0031969,chloroplast membrane; GO:0046471,phosphatidylglycerol metabolic process; GO:0052637,delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity; GO:0102654,1-18:1-2-16:0-phosphatidylglycerol trans-3 desaturase activity; GO:0102851,1-18:2-2-16:0-phosphatidylglycerol desaturase activity;	FAD4; palmitoyl-[glycerolipid] 3-(E)-desaturase [EC:1.14.19.43]; K20417;	NP_194433.1 fatty acid desaturase A [Arabidopsis thaliana]	17	23	20	27
AT2G03680	no change	-0.42298536541141374	0.3661247259847129	0.7011134873595039	AT2G03680	--	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005819,spindle; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0009826,unidimensional cell growth; GO:0010005,cortical microtubule, transverse to long axis; GO:0043622,cortical microtubule organization; GO:0051211,anisotropic cell growth; GO:0055028,cortical microtubule; GO:0071472,cellular response to salt stress;	--	NP_001154491.1 spiral1 [Arabidopsis thaliana]	461	382	275	205
AT3G15630	no change	-0.5465498721708535	0.366393423974477	0.7011134873595039	AT3G15630	--	--	--	NP_566521.1 plant/protein [Arabidopsis thaliana]	71	73	53	45
AT4G02620	no change	0.4764086421985283	0.3663972252212731	0.7011134873595039	AT4G02620	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0034220,ion transmembrane transport; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport;	ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F; K02151;	NP_192171.1 vacuolar ATPase subunit F family protein [Arabidopsis thaliana]	263	173	268	188
AT1G61600	no change	2.4339495628081345	0.3669654505681615	0.7012709716562675	AT1G61600	--	--	--	NP_176354.1 DUF1262 family protein (DUF1262) [Arabidopsis thaliana]	16	0	8	8
AT5G23230	no change	0.8004295323744959	0.367030622493575	0.7012709716562675	AT5G23230	--	GO:0005575,cellular_component; GO:0008936,nicotinamidase activity; GO:0016787,hydrolase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0019674,NAD metabolic process;	--	NP_197714.1 nicotinamidase 2 [Arabidopsis thaliana]	25	11	16	14
AT2G29560	no change	-0.3190969554831362	0.3680018289108706	0.7025991407188039	AT2G29560	--	GO:0000015,phosphopyruvate hydratase complex; GO:0000287,magnesium ion binding; GO:0004634,phosphopyruvate hydratase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006096,glycolytic process; GO:0016829,lyase activity; GO:0046872,metal ion binding;	ENO, eno; enolase [EC:4.2.1.11]; K01689;	NP_180516.1 cytosolic enolase [Arabidopsis thaliana]	123	137	102	70
AT1G32070	no change	0.4075354961831046	0.3698932250036993	0.7056808527994114	AT1G32070	--	GO:0004059,aralkylamine N-acetyltransferase activity; GO:0004468,lysine N-acetyltransferase activity, acting on acetyl phosphate as donor; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008080,N-acetyltransferase activity; GO:0009507,chloroplast; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0030187,melatonin biosynthetic process; GO:0043231,intracellular membrane-bounded organelle; GO:0046739,transport of virus in multicellular host; GO:0062055,photosynthetic state transition;	SNAT; aralkylamine N-acetyltransferase [EC:2.3.1.87]; K22450;	NP_564387.1 nuclear shuttle interacting [Arabidopsis thaliana]	72	84	62	40
AT5G21105	no change	-0.5986502159700198	0.3717647441202493	0.707300732484321	AT5G21105	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0008447,L-ascorbate oxidase activity; GO:0009506,plasmodesma; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3]; K00423;	NP_680176.5 Plant L-ascorbate oxidase [Arabidopsis thaliana]	310	298	227	170
AT3G10570	no change	0.564677652769868	0.37182886168835777	0.707300732484321	AT3G10570	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0009908,flower development; GO:0010143,cutin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0052722,fatty acid in-chain hydroxylase activity;	CYP77A; cytochrome P450 family 77 subfamily A [EC:1.14.-.-]; K21995;	NP_187668.1 cytochrome P450, family 77, subfamily A, polypeptide 6 [Arabidopsis thaliana]	1093	929	752	569
AT1G76390	no change	-0.32959209895914654	0.37198672500780594	0.707300732484321	AT1G76390	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_001077833.1 ARM repeat superfamily protein [Arabidopsis thaliana]	118	102	104	62
AT5G10150	no change	-0.576970687455935	0.3719891891355697	0.707300732484321	AT5G10150	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0009925,basal plasma membrane; GO:0016020,membrane; GO:0031234,extrinsic component of cytoplasmic side of plasma membrane; GO:0042803,protein homodimerization activity; GO:0051258,protein polymerization; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0090708,specification of plant organ axis polarity; GO:1905392,plant organ morphogenesis; GO:2000067,regulation of root morphogenesis;	--	NP_196577.1 UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]	134	135	81	45
AT2G28650	no change	1.2096340201273357	0.37220434615933207	0.707300732484321	AT2G28650	--	GO:0000145,exocyst; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0006887,exocytosis; GO:0015031,protein transport;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_180433.1 exocyst subunit exo70 family protein H8 [Arabidopsis thaliana]	10	6	7	5
AT5G17540	no change	-0.5552234806685368	0.372612842443677	0.707300732484321	AT5G17540	--	GO:0008150,biological_process; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups;	BEBT, AMAT; benzyl alcohol O-benzoyltransferase [EC:2.3.1.196 2.3.1.232]; K19861;	NP_197256.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	83	32	29	20
AT4G20260	no change	-0.364985128838593	0.3726877336980253	0.707300732484321	AT4G20260	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005547,phosphatidylinositol-3,4,5-trisphosphate binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005881,cytoplasmic microtubule; GO:0005886,plasma membrane; GO:0006499,N-terminal protein myristoylation; GO:0008017,microtubule binding; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0010350,cellular response to magnesium starvation; GO:0016020,membrane; GO:0031115,negative regulation of microtubule polymerization; GO:0031117,positive regulation of microtubule depolymerization; GO:0035865,cellular response to potassium ion; GO:0043325,phosphatidylinositol-3,4-bisphosphate binding; GO:0043622,cortical microtubule organization; GO:0043657,host cell; GO:0046658,anchored component of plasma membrane; GO:0051511,negative regulation of unidimensional cell growth; GO:0051592,response to calcium ion; GO:0070161,anchoring junction; GO:0071219,cellular response to molecule of bacterial origin; GO:0071280,cellular response to copper ion; GO:0071281,cellular response to iron ion; GO:0071286,cellular response to magnesium ion; GO:0071325,cellular response to mannitol stimulus; GO:0071472,cellular response to salt stress; GO:0072709,cellular response to sorbitol; GO:0075733,intracellular transport of virus; GO:0080025,phosphatidylinositol-3,5-bisphosphate binding; GO:0090332,stomatal closure;	--	NP_001031676.1 plasma-membrane associated cation-binding protein 1 [Arabidopsis thaliana]	2439	2309	1466	1092
AT1G12820	no change	-0.47255182131675344	0.3742558689266198	0.7097475308630755	AT1G12820	--	GO:0000822,inositol hexakisphosphate binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0009734,auxin-activated signaling pathway; GO:0010011,auxin binding; GO:0010152,pollen maturation; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; GO:0048443,stamen development; GO:0048527,lateral root development; GO:0051716,cellular response to stimulus; GO:0071249,cellular response to nitrate; GO:0080022,primary root development;	--	NP_563915.1 auxin signaling F-box 3 [Arabidopsis thaliana]	154	120	105	74
AT1G13930	no change	-0.3769489002260169	0.37477808085236813	0.7102086491208317	AT1G13930	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009941,chloroplast envelope; GO:0010115,regulation of abscisic acid biosynthetic process;	--	NP_001184989.1 oleosin-B3-like protein [Arabidopsis thaliana]	9300	7367	5296	4256
AT1G62740	no change	0.2415018099257229	0.375106648462113	0.7103023960833911	AT1G62740	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0030544,Hsp70 protein binding; GO:0046686,response to cadmium ion; GO:0051131,chaperone-mediated protein complex assembly; GO:0051879,Hsp90 protein binding; GO:0070678,preprotein binding;	STIP1; stress-induced-phosphoprotein 1; K09553;	NP_176461.1 stress-inducible protein [Arabidopsis thaliana]	409	379	283	237
AT3G14690	no change	-0.6301361332002475	0.37642450558099616	0.712267930634673	AT3G14690	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005829,cytosol; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_001325567.1 cytochrome P450, family 72, subfamily A, polypeptide 15 [Arabidopsis thaliana]	74	66	31	22
AT4G34220	no change	-0.41652885254071137	0.3768901867054853	0.7126192608955869	AT4G34220	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0010030,positive regulation of seed germination; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0042631,cellular response to water deprivation;	--	NP_567961.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	138	115	74	52
AT3G53480	no change	0.7973208846361999	0.3778904699069866	0.7139801380202531	AT3G53480	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009636,response to toxic substance; GO:0009734,auxin-activated signaling pathway; GO:0009804,coumarin metabolic process; GO:0009926,auxin polar transport; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0015562,efflux transmembrane transporter activity; GO:0016020,membrane; GO:0018901,2,4-dichlorophenoxyacetic acid metabolic process; GO:0048364,root development; GO:0055085,transmembrane transport; GO:0071366,cellular response to indolebutyric acid stimulus; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity; GO:1990641,response to iron ion starvation; GO:1990748,cellular detoxification;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_190916.1 pleiotropic drug resistance 9 [Arabidopsis thaliana]	30	29	20	16
AT3G14430	no change	0.33089126794766077	0.3786119266491534	0.7146004496257973	AT3G14430	--	GO:0006979,response to oxidative stress; GO:0016020,membrane;	--	NP_566488.1 GRIP/coiled-coil protein [Arabidopsis thaliana]	212	192	292	198
AT5G27640	no change	-0.4938007067470451	0.3787803562063656	0.7146004496257973	AT5G27640	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0009536,plastid; GO:0016282,eukaryotic 43S preinitiation complex; GO:0031369,translation initiation factor binding; GO:0033290,eukaryotic 48S preinitiation complex;	EIF3B; translation initiation factor 3 subunit B; K03253;	NP_001330567.1 translation initiation factor 3B1 [Arabidopsis thaliana]	744	665	541	554
AT5G04800	no change	-0.3360532026601719	0.3793150908994021	0.7150791898807246	AT5G04800	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:1990904,ribonucleoprotein complex;	RP-S17e, RPS17; small subunit ribosomal protein S17e; K02962;	NP_001031834.1 Ribosomal S17 family protein [Arabidopsis thaliana]	1017	984	1010	791
AT3G16640	no change	0.4824658694865267	0.3806175307746977	0.7164745864037597	AT3G16640	--	GO:0000325,plant-type vacuole; GO:0001558,regulation of cell growth; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007346,regulation of mitotic cell cycle; GO:0008017,microtubule binding; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009579,thylakoid; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0009819,drought recovery; GO:0009860,pollen tube growth; GO:0010252,auxin homeostasis; GO:0019904,protein domain specific binding; GO:0031117,positive regulation of microtubule depolymerization; GO:0040014,regulation of multicellular organism growth; GO:0048046,apoplast; GO:0048364,root development; GO:0048527,lateral root development; GO:0048768,root hair cell tip growth; GO:0051301,cell division; GO:0090333,regulation of stomatal closure; GO:0090406,pollen tube;	--	NP_188286.1 translationally controlled tumor protein [Arabidopsis thaliana]	1804	1623	1494	1121
AT5G19950	no change	0.36919688527580696	0.38105989315906663	0.7164745864037597	AT5G19950	--	GO:0005634,nucleus; GO:0005739,mitochondrion;	--	NP_568387.1 tudor domain protein (DUF1767) [Arabidopsis thaliana]	82	72	74	52
AT1G09340	no change	-0.6118339941146118	0.3810993850864002	0.7164745864037597	AT1G09340	--	GO:0000272,polysaccharide catabolic process; GO:0000325,plant-type vacuole; GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005975,carbohydrate metabolic process; GO:0005996,monosaccharide metabolic process; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010297,heteropolysaccharide binding; GO:0010319,stromule; GO:0010468,regulation of gene expression; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0042631,cellular response to water deprivation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast;	--	NP_001322308.1 chloroplast RNA binding protein [Arabidopsis thaliana]	691	648	211	163
AT4G04630	no change	0.6160358123768592	0.3811813713126486	0.7164745864037597	AT4G04630	--	--	--	NP_567264.1 senescence regulator (Protein of unknown function, DUF584) [Arabidopsis thaliana]	51	37	44	15
AT1G04790	no change	0.4014614679981925	0.38213557139119	0.7177380289229361	AT1G04790	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_563717.1 RING/U-box superfamily protein [Arabidopsis thaliana]	65	97	58	77
AT3G56360	no change	-0.5649088672744682	0.38284858868432486	0.7185469455764062	AT3G56360	--	GO:0009536,plastid;	--	NP_191195.1 hypothetical protein AT3G56360 [Arabidopsis thaliana]	144	141	69	45
AT3G51720	no change	-0.49938872402969814	0.38357396396645016	0.7193778469378156	AT3G51720	--	GO:0005829,cytosol; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement;	--	NP_190740.1 WEB family protein (DUF827) [Arabidopsis thaliana]	114	107	60	60
AT1G17100	no change	0.6218978267564275	0.3842859571189009	0.7201824454106058	AT1G17100	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0020037,heme binding; GO:0099503,secretory vesicle; GO:0110165,cellular anatomical entity;	--	NP_173153.1 SOUL heme-binding family protein [Arabidopsis thaliana]	308	263	174	87
AT2G47440	no change	-0.5436293097189129	0.38541917895601696	0.7213324009612555	AT2G47440	--	GO:0005515,protein binding;	--	NP_001325408.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	339	244	151	162
AT1G21780	no change	0.3088932684055852	0.38546643037615225	0.7213324009612555	AT1G21780	--	GO:0005515,protein binding; GO:0016567,protein ubiquitination;	SPOP; speckle-type POZ protein; K10523;	NP_001077574.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]	119	93	153	79
AT5G66330	no change	0.4429867126609919	0.3865984728349795	0.7229192603710676	AT5G66330	--	GO:0005515,protein binding;	--	NP_201434.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	119	106	80	65
AT5G58230	no change	-0.44275762638733873	0.3871380310456584	0.7233966879671077	AT5G58230	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005677,chromatin silencing complex; GO:0006260,DNA replication; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006349,regulation of gene expression by genomic imprinting; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0009908,flower development; GO:0009909,regulation of flower development; GO:0010026,trichome differentiation; GO:0010214,seed coat development; GO:0030154,cell differentiation; GO:0031507,heterochromatin formation; GO:0032991,protein-containing complex; GO:0042393,histone binding; GO:0045787,positive regulation of cell cycle; GO:0048316,seed development; GO:0048366,leaf development; GO:0070176,DRM complex; GO:0070828,heterochromatin organization; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:2000653,regulation of genetic imprinting;	RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4; K10752;	NP_200631.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	390	354	292	177
AT5G20110	no change	0.8621519189783946	0.3889221081951732	0.726067065953141	AT5G20110	--	GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005868,cytoplasmic dynein complex; GO:0005874,microtubule; GO:0007017,microtubule-based process; GO:0030286,dynein complex; GO:0045505,dynein intermediate chain binding; GO:0110165,cellular anatomical entity;	DYNLL; dynein light chain LC8-type; K10418;	NP_197511.1 Dynein light chain type 1 family protein [Arabidopsis thaliana]	6	11	10	26
AT5G22080	no change	0.34734340364922467	0.38929140510897287	0.726067065953141	AT5G22080	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001190359.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	208	190	170	108
AT3G07565	no change	0.7119825683639931	0.3894230039395039	0.726067065953141	AT3G07565	--	--	--	NP_187413.1 histone H2A deubiquitinase (DUF3755) [Arabidopsis thaliana]	37	21	40	35
AT3G62630	no change	-0.4994168445496072	0.3897533036175305	0.7261509207222658	AT3G62630	--	--	--	NP_191822.1 stress response NST1-like protein (DUF1645) [Arabidopsis thaliana]	219	158	134	104
AT3G12700	no change	-0.364173332635362	0.39096325777249413	0.727457998412311	AT3G12700	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0006508,proteolysis; GO:0007623,circadian rhythm; GO:0008233,peptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009744,response to sucrose; GO:0010019,chloroplast-nucleus signaling pathway; GO:0016787,hydrolase activity;	--	NP_187876.2 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	96	114	76	58
AT1G24600	no change	-1.367928490502976	0.3911166987500462	0.727457998412311	AT1G24600	--	--	--	NP_564221.1 hypothetical protein AT1G24600 [Arabidopsis thaliana]	10	11	3	1
AT4G13940	no change	0.6499776872007281	0.39131237714202505	0.727457998412311	AT4G13940	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004013,adenosylhomocysteinase activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006346,DNA methylation-dependent heterochromatin formation; GO:0006730,one-carbon metabolic process; GO:0009506,plasmodesma; GO:0009793,embryo development ending in seed dormancy; GO:0016441,post-transcriptional gene silencing; GO:0016787,hydrolase activity; GO:0033353,S-adenosylmethionine cycle;	E3.3.1.1, ahcY; adenosylhomocysteinase [EC:3.3.1.1]; K01251;	NP_193130.1 S-adenosyl-L-homocysteine hydrolase [Arabidopsis thaliana]	8766	8067	4602	3475
AT5G07940	no change	0.43854405999569135	0.3918342218299557	0.7276535147936388	AT5G07940	--	--	--	NP_001331336.1 dentin sialophosphoprotein-like protein [Arabidopsis thaliana]	38	58	90	40
AT2G45710	no change	0.5106411510609661	0.3919893786962982	0.7276535147936388	AT2G45710	--	GO:0000028,ribosomal small subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex;	RP-S27e, RPS27; small subunit ribosomal protein S27e; K02978;	NP_182095.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]	158	153	212	187
AT1G19350	no change	0.3461682369941812	0.39262253608699144	0.7277695897511648	AT1G19350	BES1	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009650,UV protection; GO:0009742,brassinosteroid mediated signaling pathway; GO:0042742,defense response to bacterium; GO:0045892,negative regulation of DNA-templated transcription; GO:0071367,cellular response to brassinosteroid stimulus; GO:1904961,quiescent center organization;	BZR1_2; brassinosteroid resistant 1/2; K14503;	NP_001077562.1 Brassinosteroid signaling positive regulator (BZR1) family protein [Arabidopsis thaliana]	119	79	122	55
AT1G55130	no change	-0.4235559628866419	0.39262382975573645	0.7277695897511648	AT1G55130	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0072657,protein localization to membrane;	--	CAD5315601.1 unnamed protein product [Arabidopsis thaliana]	214	169	125	109
AT4G00905	no change	-0.8199165866609661	0.3929617392579882	0.7278007702241341	AT4G00905	--	--	--	NP_680550.1 NC domain-containing protein-like protein [Arabidopsis thaliana]	13	20	10	12
AT1G47750	no change	0.5743548779786174	0.39355864939012514	0.7278007702241341	AT1G47750	--	GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0007031,peroxisome organization; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size;	--	NP_564514.1 peroxin 11A [Arabidopsis thaliana]	41	56	41	24
AT1G49970	no change	-0.4730548030398154	0.3943172744478672	0.7278007702241341	AT1G49970	--	GO:0003723,RNA binding; GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0009368,endopeptidase Clp complex; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0009941,chloroplast envelope; GO:0051117,ATPase binding;	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358;	NP_564560.1 CLP protease proteolytic subunit 1 [Arabidopsis thaliana]	596	510	322	240
AT4G22310	no change	-0.5300188631340346	0.39498674871315503	0.7278007702241341	AT4G22310	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0006850,mitochondrial pyruvate transmembrane transport; GO:0016020,membrane;	--	NP_193962.1 Uncharacterized protein family (UPF0041) [Arabidopsis thaliana]	58	36	53	16
AT5G63375	no change	1.2544261210350136	0.39498755469083097	0.7278007702241341	AT5G63375	--	--	--	NP_001331511.1 hypothetical protein AT5G63375 [Arabidopsis thaliana]	10	3	8	4
AT2G26110	no change	-0.37929589995019697	0.39536811541109457	0.7278007702241341	AT2G26110	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_180180.3 bromodomain protein (DUF761) [Arabidopsis thaliana]	91	93	89	36
AT4G12390	no change	-0.9562721457705106	0.3953875091420507	0.7278007702241341	AT4G12390	--	GO:0004857,enzyme inhibitor activity; GO:0009506,plasmodesma; GO:0043086,negative regulation of catalytic activity;	--	NP_192976.1 pectin methylesterase inhibitor 1 [Arabidopsis thaliana]	9	25	10	4
AT5G64410	no change	-0.6176108647646714	0.3956404626472339	0.7278007702241341	AT5G64410	--	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_201246.1 oligopeptide transporter 4 [Arabidopsis thaliana]	199	153	70	44
AT5G11550	no change	0.45693450066396224	0.39564711254125434	0.7278007702241341	AT5G11550	--	--	--	KAG7601939.1 Armadillo-type fold [Arabidopsis thaliana x Arabidopsis arenosa]	105	104	84	67
AT4G19840	no change	-0.30837272243464486	0.3957516925901417	0.7278007702241341	AT4G19840	--	GO:0009625,response to insect; GO:0030246,carbohydrate binding; GO:0043394,proteoglycan binding;	--	NP_193719.1 phloem protein 2-A1 [Arabidopsis thaliana]	177	204	85	80
AT4G38170	no change	-0.4961693201651567	0.3958601524137508	0.7278007702241341	AT4G38170	--	GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_195530.2 FAR1-related sequence 9 [Arabidopsis thaliana]	61	64	32	49
AT2G22795	no change	-0.5161338991861406	0.396342712610773	0.7278007702241341	AT2G22795	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network;	--	NP_850032.1 hypothetical protein AT2G22795 [Arabidopsis thaliana]	528	443	262	213
AT3G02470	no change	-0.50737968681584	0.3965553341801542	0.7278007702241341	AT3G02470	--	GO:0004014,adenosylmethionine decarboxylase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006596,polyamine biosynthetic process; GO:0006597,spermine biosynthetic process; GO:0008295,spermidine biosynthetic process; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0019079,viral genome replication; GO:0099402,plant organ development;	speD, AMD1; S-adenosylmethionine decarboxylase [EC:4.1.1.50]; K01611;	NP_001078093.1 S-adenosylmethionine decarboxylase [Arabidopsis thaliana]	1580	1379	1174	905
AT5G02130	no change	0.42455922286861014	0.39664427045220985	0.7278007702241341	AT5G02130	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0010073,meristem maintenance; GO:1901703,protein localization involved in auxin polar transport;	--	NP_195833.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	63	47	63	34
AT2G24970	no change	1.1910313477079093	0.3973474463485123	0.7285117914988676	AT2G24970	--	GO:0000278,mitotic cell cycle; GO:0000940,outer kinetochore; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005876,spindle microtubule; GO:0007059,chromosome segregation; GO:0008017,microtubule binding; GO:0051301,cell division;	--	NP_565581.1 spindle/kinetochore-associated protein [Arabidopsis thaliana]	5	5	7	7
AT5G22250	no change	-0.8350382938880205	0.3976042744172601	0.7285117914988676	AT5G22250	--	GO:0000289,nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0008408,3'-5' exonuclease activity; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0042742,defense response to bacterium; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_197617.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	11	14	17	9
AT5G64160	no change	-0.4402824343101148	0.3980082428758867	0.7286104446670391	AT5G64160	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_568986.1 plant/protein [Arabidopsis thaliana]	40	58	53	41
AT1G28420	no change	0.6161383244332441	0.3982306988337333	0.7286104446670391	AT1G28420	HB-other	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0031010,ISWI-type complex; GO:0043229,intracellular organelle; GO:0045892,negative regulation of DNA-templated transcription; GO:0048510,regulation of timing of transition from vegetative to reproductive phase;	--	NP_174164.2 homeobox-1 [Arabidopsis thaliana]	105	126	89	92
AT4G16510	no change	0.5712114765422864	0.3989623016329423	0.7294246103849411	AT4G16510	--	GO:0002161,aminoacyl-tRNA editing activity; GO:0006399,tRNA metabolic process; GO:0106074,aminoacyl-tRNA metabolism involved in translational fidelity;	--	NP_567502.1 YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]	32	18	31	26
AT2G28440	no change	-1.1598740551064957	0.3998186013393464	0.7304654274290283	AT2G28440	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_180411.1 proline-rich family protein [Arabidopsis thaliana]	16	8	4	3
AT1G01750	no change	-1.360806769971333	0.4004089823711493	0.7310192683892216	AT1G01750	--	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0030042,actin filament depolymerization; GO:0051015,actin filament binding;	CFL; cofilin; K05765;	NP_171680.1 actin depolymerizing factor 11 [Arabidopsis thaliana]	6	13	4	1
AT2G47860	no change	0.8625850795871539	0.4016981584729637	0.7324436002581092	AT2G47860	--	GO:0005515,protein binding; GO:0009846,pollen germination; GO:0016567,protein ubiquitination;	--	NP_001189774.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	15	16	16	5
AT5G28540	no change	0.507554613876696	0.40176474104531257	0.7324436002581092	AT5G28540	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005794,Golgi apparatus; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0016020,membrane; GO:0016592,mediator complex; GO:0016887,ATP hydrolysis activity; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0034663,endoplasmic reticulum chaperone complex; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone;	HSPA5, BIP; endoplasmic reticulum chaperone BiP [EC:3.6.4.10]; K09490;	NP_198206.1 heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]	1974	1712	991	747
AT1G21600	no change	0.5701489711297167	0.4031157143007759	0.7343804530389941	AT1G21600	--	GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0005515,protein binding; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042644,chloroplast nucleoid; GO:0042793,plastid transcription; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_001031076.1 plastid transcriptionally active 6 [Arabidopsis thaliana]	259	244	176	121
AT1G12470	no change	0.6035381877065689	0.4038445604648247	0.7348898661016829	AT1G12470	--	GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006886,intracellular protein transport; GO:0006904,vesicle docking involved in exocytosis; GO:0007032,endosome organization; GO:0007033,vacuole organization; GO:0009705,plant-type vacuole membrane; GO:0010008,endosome membrane; GO:0010015,root morphogenesis; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030674,protein-macromolecule adaptor activity; GO:0030897,HOPS complex; GO:0033263,CORVET complex; GO:0046872,metal ion binding; GO:0048284,organelle fusion;	VPS18, PEP3; vacuolar protein sorting-associated protein 18; K20181;	NP_172709.2 zinc ion binding protein [Arabidopsis thaliana]	398	293	324	287
AT2G36380	no change	-0.4594054237863201	0.40397285763310586	0.7348898661016829	AT2G36380	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_181179.2 pleiotropic drug resistance 6 [Arabidopsis thaliana]	258	217	218	172
AT1G15100	no change	0.6605382865655045	0.40483865946458153	0.7359388488124	AT1G15100	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009651,response to salt stress; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0047484,regulation of response to osmotic stress; GO:0061630,ubiquitin protein ligase activity;	--	NP_172962.1 RING-H2 finger A2A [Arabidopsis thaliana]	36	24	10	26
AT1G75310	no change	-0.5700546291059165	0.4073055960045334	0.7398948906720468	AT1G75310	--	--	--	NP_177666.1 auxin-like 1 protein [Arabidopsis thaliana]	112	135	87	88
AT1G72280	no change	0.7130084610937502	0.4077886323264119	0.7400506092398477	AT1G72280	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0015035,protein-disulfide reductase activity; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016972,thiol oxidase activity; GO:0034975,protein folding in endoplasmic reticulum; GO:0071949,FAD binding;	ERO1L; ERO1-like protein alpha [EC:1.8.4.-]; K10950;	NP_177372.1 endoplasmic reticulum oxidoreductins 1 [Arabidopsis thaliana]	189	131	43	51
AT2G31750	no change	0.3888595729324882	0.4080168816930466	0.7400506092398477	AT2G31750	--	GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0009850,auxin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0052638,indole-3-butyrate beta-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_001325305.1 UDP-glucosyl transferase 74D1 [Arabidopsis thaliana]	78	102	61	57
AT3G52500	no change	-0.1850872059325006	0.4085099956252323	0.7400506092398477	AT3G52500	--	GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity;	--	NP_566966.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	1297	1172	791	661
AT5G44020	no change	0.6615876282869664	0.4085544620754365	0.7400506092398477	AT5G44020	--	GO:0000325,plant-type vacuole; GO:0003993,acid phosphatase activity; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0045735,nutrient reservoir activity;	--	NP_199215.1 HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	95	92	61	44
AT3G56900	no change	-0.3743335789036219	0.4089602988417568	0.7400548112676409	AT3G56900	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005783,endoplasmic reticulum; GO:0006913,nucleocytoplasmic transport; GO:0015031,protein transport; GO:0051028,mRNA transport;	AAAS; aladin; K14320;	NP_191249.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	91	86	42	40
AT3G53100	no change	-0.6074232778052338	0.4091383573491437	0.7400548112676409	AT3G53100	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_190878.2 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	39	34	12	17
AT4G24210	no change	-0.36775181111677746	0.4110721798878882	0.7430246433342865	AT4G24210	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009845,seed germination; GO:0010162,seed dormancy process; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	GID2, SLY1; F-box protein GID2; K14495;	NP_194152.1 F-box family protein [Arabidopsis thaliana]	137	91	84	67
AT3G13480	no change	-0.8561119731754303	0.4114422340988848	0.7431657102779715	AT3G13480	--	GO:0008150,biological_process;	--	NP_001327070.1 nuclear polyadenylated RNA-binding protein [Arabidopsis thaliana]	15	22	12	4
AT2G38310	no change	0.5722443998216971	0.4122166869444607	0.7440365023217393	AT2G38310	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0009705,plant-type vacuole membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0044389,ubiquitin-like protein ligase binding; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_565887.1 PYR1-like 4 [Arabidopsis thaliana]	81	40	57	37
AT1G79280	no change	0.47261148383443263	0.41336999000594415	0.7455893866514018	AT1G79280	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006406,mRNA export from nucleus; GO:0006606,protein import into nucleus; GO:0009506,plasmodesma; GO:0009910,negative regulation of flower development; GO:0015031,protein transport; GO:0016020,membrane; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0017056,structural constituent of nuclear pore; GO:0031965,nuclear membrane; GO:0033234,negative regulation of protein sumoylation; GO:0048443,stamen development; GO:0051028,mRNA transport;	TPR, MLP1, MLP2; nucleoprotein TPR; K09291;	NP_178048.2 nuclear pore anchor [Arabidopsis thaliana]	579	481	487	410
AT1G71170	no change	-0.5807353905820989	0.41426762472567624	0.7462763606902344	AT1G71170	--	GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding;	HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020;	NP_565013.2 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	286	230	83	79
AT4G32560	no change	0.35168531848139484	0.4143373271730064	0.7462763606902344	AT4G32560	--	GO:0006893,Golgi to plasma membrane transport;	--	NP_001031771.1 paramyosin-like protein [Arabidopsis thaliana]	104	83	55	41
AT5G10060	no change	-0.6022731770756966	0.41501769288849816	0.7465755128606011	AT5G10060	--	GO:0000993,RNA polymerase II complex binding; GO:0006397,mRNA processing; GO:0016591,RNA polymerase II, holoenzyme; GO:0031124,mRNA 3'-end processing;	--	NP_196568.2 ENTH/VHS family protein [Arabidopsis thaliana]	56	51	31	40
AT4G18130	no change	-0.3859168036093123	0.4156234339741623	0.7465755128606011	AT4G18130	--	GO:0000155,phosphorelay sensor kinase activity; GO:0000160,phosphorelay signal transduction system; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007165,signal transduction; GO:0009584,detection of visible light; GO:0009585,red, far-red light phototransduction; GO:0009881,photoreceptor activity; GO:0017006,protein-tetrapyrrole linkage; GO:0042803,protein homodimerization activity; GO:0043231,intracellular membrane-bounded organelle; GO:0050896,response to stimulus;	PHYE; phytochrome E; K12123;	NP_193547.4 phytochrome E [Arabidopsis thaliana]	116	111	66	34
AT2G41670	no change	-0.5950805887372983	0.41570841894836474	0.7465755128606011	AT2G41670	--	GO:0000166,nucleotide binding; GO:0000911,cytokinesis by cell plate formation; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005739,mitochondrion; GO:0006412,translation; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0032543,mitochondrial translation; GO:0048481,plant ovule development;	--	NP_850353.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	30	29	18	17
AT3G24560	no change	-0.9072588205666944	0.41584122818846597	0.7465755128606011	AT3G24560	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006400,tRNA modification; GO:0008033,tRNA processing; GO:0009507,chloroplast; GO:0009658,chloroplast organization; GO:0009793,embryo development ending in seed dormancy; GO:0010098,suspensor development; GO:0016787,hydrolase activity; GO:0016874,ligase activity; GO:0016879,ligase activity, forming carbon-nitrogen bonds;	--	NP_566753.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]	25	12	3	11
AT1G61740	no change	-0.32434067535904454	0.41635555687011394	0.7465755128606011	AT1G61740	--	GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016567,protein ubiquitination; GO:0031464,Cul4A-RING E3 ubiquitin ligase complex;	--	NP_176367.1 Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana]	205	135	97	57
AT5G51880	no change	0.4654083038156269	0.41649255745958585	0.7465755128606011	AT5G51880	--	GO:0004656,procollagen-proline 4-dioxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0018401,peptidyl-proline hydroxylation to 4-hydroxy-L-proline; GO:0031418,L-ascorbic acid binding; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_568767.2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	141	99	74	58
AT1G64620	no change	0.9679399040902226	0.41655686768646505	0.7465755128606011	AT1G64620	Dof	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_564836.1 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	9	8	8	9
AT1G63850	no change	-0.3952966080219058	0.41752627403350673	0.7477863247116641	AT1G63850	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_176570.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]	112	124	78	60
AT5G45400	no change	-0.39143272771841175	0.4186129841333904	0.749205375963065	AT5G45400	--	GO:0000724,double-strand break repair via homologous recombination; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003684,damaged DNA binding; GO:0005634,nucleus; GO:0005662,DNA replication factor A complex; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006281,DNA repair; GO:0006289,nucleotide-excision repair; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0007004,telomere maintenance via telomerase; GO:0043047,single-stranded telomeric DNA binding; GO:0046872,metal ion binding; GO:0051321,meiotic cell cycle;	RFA1, RPA1, rpa; replication factor A1; K07466;	NP_199353.1 Replication factor-A protein 1-like protein [Arabidopsis thaliana]	65	52	48	46
AT4G31020	no change	-1.2626767081885646	0.4192218855218373	0.7497678838039887	AT4G31020	--	GO:0008150,biological_process; GO:0008474,palmitoyl-(protein) hydrolase activity; GO:0098734,macromolecule depalmitoylation;	--	NP_194831.3 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	9	10	2	3
AT3G60750	no change	0.4712276053125563	0.4202484118805282	0.7510759889297361	AT3G60750	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004802,transketolase activity; GO:0005829,cytosol; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0046872,metal ion binding;	E2.2.1.1, tktA, tktB; transketolase [EC:2.2.1.1]; K00615;	NP_567103.1 Transketolase [Arabidopsis thaliana]	8542	7374	5360	3990
AT4G15130	no change	0.5543551581210338	0.42113402321402266	0.751554545853592	AT4G15130	--	--	PCYT1; choline-phosphate cytidylyltransferase [EC:2.7.7.15]; K00968;	NP_193249.5 phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	54	65	50	32
AT3G02720	no change	-0.3914470846367646	0.42128225976422035	0.751554545853592	AT3G02720	--	GO:0004462,lactoylglutathione lyase activity; GO:0005829,cytosol; GO:0016829,lyase activity; GO:0019172,glyoxalase III activity; GO:0019249,lactate biosynthetic process; GO:0061727,methylglyoxal catabolic process to lactate;	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881;	NP_186921.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]	211	186	79	81
AT2G47180	no change	-0.5112952262889792	0.42140209702674886	0.751554545853592	AT2G47180	--	GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0006012,galactose metabolic process; GO:0006950,response to stress; GO:0006979,response to oxidative stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046872,metal ion binding; GO:0047216,inositol 3-alpha-galactosyltransferase activity;	GOLS; inositol 3-alpha-galactosyltransferase [EC:2.4.1.123]; K18819;	NP_182240.1 galactinol synthase 1 [Arabidopsis thaliana]	36	57	61	33
AT5G52420	no change	-0.5451946491065254	0.4220596917981937	0.7521385753103289	AT5G52420	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0009536,plastid; GO:0016020,membrane;	--	NP_568771.1 transmembrane protein [Arabidopsis thaliana]	61	74	49	18
AT5G16030	no change	0.41658047826241695	0.4225519653444954	0.7521385753103289	AT5G16030	--	--	--	NP_568324.1 mental retardation GTPase activating protein [Arabidopsis thaliana]	68	54	81	51
AT2G47020	no change	0.8808750054762822	0.4226161739464716	0.7521385753103289	AT2G47020	--	GO:0003747,translation release factor activity; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006415,translational termination; GO:0016149,translation release factor activity, codon specific;	--	NP_182225.3 Peptide chain release factor 1 [Arabidopsis thaliana]	11	11	8	11
AT4G18670	no change	0.21157657312491152	0.42349910951531033	0.7531032353633419	AT4G18670	--	GO:0005199,structural constituent of cell wall; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0071555,cell wall organization;	--	NP_193602.4 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	444	353	283	195
AT4G00752	no change	0.4884447372449454	0.42418667988891623	0.7531032353633419	AT4G00752	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0043130,ubiquitin binding;	--	NP_680549.3 UBX domain-containing protein [Arabidopsis thaliana]	37	38	27	35
AT4G38510	no change	-0.4537520880946264	0.42427010509901913	0.7531032353633419	AT4G38510	--	GO:0000221,vacuolar proton-transporting V-type ATPase, V1 domain; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0007035,vacuolar acidification; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0030835,negative regulation of actin filament depolymerization; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0046034,ATP metabolic process; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:0051015,actin filament binding; GO:0051017,actin filament bundle assembly; GO:0051693,actin filament capping; GO:1902600,proton transmembrane transport;	ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B; K02147;	NP_001190954.1 ATPase, V1 complex, subunit B protein [Arabidopsis thaliana]	1015	816	749	621
AT5G67420	no change	0.5665534132836108	0.4252974833453517	0.7531032353633419	AT5G67420	LBD	GO:0000976,transcription cis-regulatory region binding; GO:0006807,nitrogen compound metabolic process; GO:0010468,regulation of gene expression; GO:0060776,simple leaf morphogenesis;	--	NP_001318897.1 LOB domain-containing protein 37 [Arabidopsis thaliana]	40	38	37	21
AT1G75080	no change	0.38713962681754754	0.4253011069422088	0.7531032353633419	AT1G75080	BES1	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0045892,negative regulation of DNA-templated transcription; GO:0048316,seed development; GO:0048481,plant ovule development;	BZR1_2; brassinosteroid resistant 1/2; K14503;	NP_565099.1 Brassinosteroid signaling positive regulator (BZR1) family protein [Arabidopsis thaliana]	71	59	55	33
AT3G06830	no change	-0.5989187156545288	0.4258697277569183	0.7531032353633419	AT3G06830	--	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; GO:0090406,pollen tube;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_187339.2 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]	32	45	13	11
AT4G06744	no change	0.49313124671393815	0.4260234726711207	0.7531032353633419	AT4G06744	--	GO:0003674,molecular_function; GO:0005576,extracellular region;	--	NP_849339.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	98	92	100	93
AT5G60860	no change	0.5420649631713079	0.42651608731089347	0.7531032353633419	AT5G60860	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	RAB11A; Ras-related protein Rab-11A; K07904;	NP_200894.1 RAB GTPase homolog A1F [Arabidopsis thaliana]	66	73	68	36
AT1G77990	no change	-0.6180310677558722	0.4265378447635371	0.7531032353633419	AT1G77990	--	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_565165.2 STAS domain / Sulfate transporter family [Arabidopsis thaliana]	47	51	21	34
AT3G06960	no change	0.4117588012562363	0.42665586482092055	0.7531032353633419	AT3G06960	--	GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006869,lipid transport; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0034196,acylglycerol transport; GO:0042803,protein homodimerization activity; GO:0070300,phosphatidic acid binding; GO:1990052,ER to chloroplast lipid transport;	--	NP_566296.1 pigment defective 320 [Arabidopsis thaliana]	76	71	64	52
AT2G34070	no change	-0.6211242215184489	0.4268086812477009	0.7531032353633419	AT2G34070	--	GO:0005794,Golgi apparatus; GO:0009827,plant-type cell wall modification; GO:0009867,jasmonic acid mediated signaling pathway; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; GO:0043565,sequence-specific DNA binding;	--	NP_565779.1 TRICHOME BIREFRINGENCE-LIKE 37 [Arabidopsis thaliana]	37	28	29	7
AT3G30380	no change	-0.5628512504705672	0.42726437826673314	0.7531032353633419	AT3G30380	--	GO:0003674,molecular_function;	--	NP_001154655.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	36	40	22	11
AT4G36140	no change	-0.6052586617140552	0.42753699352599495	0.7531032353633419	AT4G36140	--	GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043130,ubiquitin binding; GO:0043531,ADP binding;	--	NP_195337.1 disease resistance protein (TIR-NBS-LRR class) [Arabidopsis thaliana]	16	23	22	23
AT5G02720	no change	-0.6642428957130626	0.42757508608391726	0.7531032353633419	AT5G02720	--	GO:0016020,membrane; GO:0016874,ligase activity;	--	NP_001318460.1 valine-tRNA ligase [Arabidopsis thaliana]	35	18	12	13
AT5G38410	no change	0.5520369969215828	0.4276247492907752	0.7531032353633419	AT5G38410	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016984,ribulose-bisphosphate carboxylase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0019904,protein domain specific binding; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	rbcS, cbbS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]; K01602;	NP_001119331.1 Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]	1732	1687	964	583
AT4G19540	no change	-0.5127859316221546	0.42796194959677886	0.7531032353633419	AT4G19540	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0016226,iron-sulfur cluster assembly; GO:0032543,mitochondrial translation; GO:0032981,mitochondrial respiratory chain complex I assembly; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0140663,ATP-dependent FeS chaperone activity;	--	NP_193689.1 INDH1(iron-sulfur protein required for NADH dehydrogenase) [Arabidopsis thaliana]	46	39	18	30
AT3G03990	no change	-0.2063487914874811	0.42818875503762505	0.7531032353633419	AT3G03990	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0010223,secondary shoot formation; GO:0016787,hydrolase activity; GO:1901601,strigolactone biosynthetic process; GO:1902348,cellular response to strigolactone;	--	NP_566220.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	338	285	226	218
AT4G27090	no change	-0.31262661044317763	0.42961074976511215	0.754958074448422	AT4G27090	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042273,ribosomal large subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L14e, RPL14; large subunit ribosomal protein L14e; K02875;	NP_194439.1 Ribosomal protein L14 [Arabidopsis thaliana]	1636	1580	1962	1465
AT2G42150	no change	1.0566058644165892	0.42983664042269687	0.754958074448422	AT2G42150	MYB_related	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005515,protein binding;	--	NP_181745.1 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	7	5	6	9
AT5G05590	no change	-1.156505061710675	0.4304779360153565	0.7555629980407463	AT5G05590	--	GO:0000162,tryptophan biosynthetic process; GO:0004640,phosphoribosylanthranilate isomerase activity; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016853,isomerase activity;	trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]; K01817;	NP_196178.2 phosphoribosylanthranilate isomerase 2 [Arabidopsis thaliana]	8	14	3	2
AT2G24350	no change	-0.9562076028761056	0.4313571363919506	0.7565843639679631	AT2G24350	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008143,poly(A) binding; GO:0043488,regulation of mRNA stability; GO:0046872,metal ion binding; GO:1900364,negative regulation of mRNA polyadenylation;	--	NP_180012.2 RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	11	14	11	2
AT2G15960	no change	0.6309508144954084	0.4327329829631424	0.7583881340349158	AT2G15960	--	GO:0005575,cellular_component;	--	NP_565384.1 stress-induced protein [Arabidopsis thaliana]	17	20	25	14
AT4G00450	no change	-0.5563068528366948	0.4330155284314935	0.7583881340349158	AT4G00450	--	GO:0003712,transcription coregulator activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0016592,mediator complex; GO:0040034,regulation of development, heterochronic; GO:0090213,regulation of radial pattern formation;	--	NP_001319832.1 RNA polymerase II transcription mediator [Arabidopsis thaliana]	133	101	59	53
AT1G70060	no change	0.4371822768102511	0.4332795076175904	0.7583881340349158	AT1G70060	--	GO:0000118,histone deacetylase complex; GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000785,chromatin; GO:0003714,transcription corepressor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016575,histone deacetylation;	SIN3A; paired amphipathic helix protein Sin3a; K11644;	NP_001323064.1 SIN3-like 4 [Arabidopsis thaliana]	143	95	149	69
AT5G13720	no change	0.438044208227737	0.4341769408430855	0.7594366422306891	AT5G13720	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane;	--	NP_196876.1 Uncharacterized protein family (UPF0114) [Arabidopsis thaliana]	78	41	35	26
AT3G21810	no change	-0.4794842007480246	0.4348702000290713	0.7596923830425155	AT3G21810	C3H	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0046872,metal ion binding;	--	NP_566691.1 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]	39	43	35	28
AT1G67950	no change	-0.5369262145243106	0.4349201579932987	0.7596923830425155	AT1G67950	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0034051,negative regulation of plant-type hypersensitive response; GO:0050832,defense response to fungus;	--	NP_564915.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	123	87	42	57
AT2G13610	no change	-0.40215581222565433	0.4360458850662795	0.7611363357295483	AT2G13610	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_178984.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	128	145	112	76
AT1G19130	no change	-0.2803463931337644	0.4366457276468094	0.7613220807377782	AT1G19130	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0008150,biological_process;	K09705; uncharacterized protein; K09705;	NP_564073.4 RmlC-like jelly roll fold protein [Arabidopsis thaliana]	319	298	271	228
AT1G22050	no change	-1.0344879662880402	0.4367505846275663	0.7613220807377782	AT1G22050	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_173624.1 membrane-anchored ubiquitin-fold protein 6 precursor [Arabidopsis thaliana]	15	12	3	3
AT1G19120	no change	0.4182214760384779	0.4371741442111191	0.7615388069933594	AT1G19120	--	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000339,RNA cap binding; GO:0000932,P-body; GO:0000956,nuclear-transcribed mRNA catabolic process; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0009414,response to water deprivation; GO:0009631,cold acclimation; GO:0016070,RNA metabolic process; GO:0042538,hyperosmotic salinity response; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex;	LSM1; U6 snRNA-associated Sm-like protein LSm1; K12620;	NP_564072.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	45	71	50	46
AT3G48820	no change	0.5823941501794412	0.4376788165239434	0.7617784983548996	AT3G48820	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006486,protein glycosylation; GO:0008373,sialyltransferase activity; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0097503,sialylation;	--	NP_974404.1 Glycosyltransferase family 29 (sialyltransferase) family protein [Arabidopsis thaliana]	130	79	92	57
AT4G11670	no change	-0.45732277022210166	0.4379103902134453	0.7617784983548996	AT4G11670	--	--	--	NP_001329079.1 DNA topoisomerase 4 subunit B (DUF810) [Arabidopsis thaliana]	47	46	37	20
AT4G03600	no change	1.0434062732027858	0.43944851224593273	0.7636771779196049	AT4G03600	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_567259.1 pyrroline-5-carboxylate reductase [Arabidopsis thaliana]	4	13	6	7
AT3G09900	no change	0.5750378534853091	0.43976118175710743	0.7636771779196049	AT3G09900	--	GO:0000139,Golgi membrane; GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006904,vesicle docking involved in exocytosis; GO:0009306,protein secretion; GO:0015031,protein transport; GO:0016020,membrane; GO:0017157,regulation of exocytosis; GO:0043231,intracellular membrane-bounded organelle;	RAB8A, MEL; Ras-related protein Rab-8A; K07901;	NP_187601.1 RAB GTPase homolog E1E [Arabidopsis thaliana]	105	88	76	42
AT3G18110	no change	0.4085613397971173	0.44013128655001194	0.7636771779196049	AT3G18110	--	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009793,embryo development ending in seed dormancy; GO:0031425,chloroplast RNA processing;	--	NP_188439.2 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	139	148	139	81
AT1G20010	no change	-0.4675990917976982	0.440202129669179	0.7636771779196049	AT1G20010	--	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005200,structural constituent of cytoskeleton; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0009505,plant-type cell wall; GO:0009570,chloroplast stroma; GO:0045298,tubulin complex; GO:0046872,metal ion binding;	TUBB; tubulin beta; K07375;	KAG7592342.1 Tubulin/FtsZ C-terminal [Arabidopsis thaliana x Arabidopsis arenosa]	3736	2637	1896	1569
AT4G37050	no change	-1.1051089308101505	0.4418905497963855	0.7660840934821533	AT4G37050	--	GO:0004620,phospholipase activity; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009737,response to abscisic acid; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0047372,acylglycerol lipase activity;	--	NP_195422.3 PATATIN-like protein 4 [Arabidopsis thaliana]	10	13	6	1
AT5G05480	no change	-0.4045440528386477	0.44234187818841486	0.7662451470859643	AT5G05480	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_568155.1 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein [Arabidopsis thaliana]	47	62	44	34
AT1G59840	no change	0.811870590823732	0.442585605585999	0.7662451470859643	AT1G59840	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane;	--	NP_176193.2 cofactor assembly of complex C [Arabidopsis thaliana]	12	11	15	7
AT4G14270	no change	0.5785898771054541	0.4432874685383646	0.7669385502584214	AT4G14270	--	--	--	NP_001319936.1 polyadenylate-binding protein interacting protein [Arabidopsis thaliana]	1067	703	632	647
AT2G25450	no change	0.4963896664361674	0.44365559648707736	0.7670540034372364	AT2G25450	--	GO:0005773,vacuole; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0010439,regulation of glucosinolate biosynthetic process; GO:0016491,oxidoreductase activity; GO:0019761,glucosinolate biosynthetic process; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0062131,3-butenylglucosinolate 2-hydroxylase activity;	--	NP_180115.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	226	225	231	136
AT2G26190	no change	-0.6032003988827306	0.4443593900953094	0.7675631106106008	AT2G26190	--	GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0071456,cellular response to hypoxia;	--	NP_001324666.1 calmodulin-binding family protein [Arabidopsis thaliana]	45	19	32	17
AT1G56610	no change	0.6668196187878088	0.4445720334550184	0.7675631106106008	AT1G56610	--	GO:0016020,membrane; GO:0016567,protein ubiquitination;	--	NP_176054.2 Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]	29	9	21	14
AT5G19940	no change	0.3936756922760232	0.44485484799632063	0.7675631106106008	AT5G19940	--	GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule;	--	NP_197494.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]	294	320	147	120
AT4G04330	no change	0.4258402225396143	0.4455302203739123	0.7677756740567003	AT4G04330	--	GO:0006457,protein folding; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0044183,protein folding chaperone; GO:0061077,chaperone-mediated protein folding; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_567263.1 Chaperonin-like RbcX protein [Arabidopsis thaliana]	40	55	43	30
AT4G14510	no change	0.3855245180106621	0.4458363680303976	0.7677756740567003	AT4G14510	--	GO:0000373,Group II intron splicing; GO:0000375,RNA splicing, via transesterification reactions; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006364,rRNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0042794,plastid rRNA transcription; GO:0048316,seed development; GO:1990904,ribonucleoprotein complex;	--	NP_193187.3 CRM family member 3B [Arabidopsis thaliana]	44	53	51	47
AT1G80840	no change	-1.1097619361907824	0.4458830830081741	0.7677756740567003	AT1G80840	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009611,response to wounding; GO:0009751,response to salicylic acid; GO:0031347,regulation of defense response; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0050832,defense response to fungus;	--	NP_178199.1 WRKY DNA-binding protein 40 [Arabidopsis thaliana]	18	10	0	5
AT5G28500	no change	0.6199767939898599	0.4469468696367711	0.7690870745271011	AT5G28500	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly;	--	NP_198202.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]	344	299	128	103
AT3G47460	no change	0.4297090098692946	0.4485569582275273	0.77093268742531	AT3G47460	--	GO:0000166,nucleotide binding; GO:0000785,chromatin; GO:0000793,condensed chromosome; GO:0000796,condensin complex; GO:0000819,sister chromatid segregation; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0007049,cell cycle; GO:0007076,mitotic chromosome condensation; GO:0016887,ATP hydrolysis activity; GO:0030261,chromosome condensation; GO:0051276,chromosome organization; GO:0051301,cell division; GO:0051321,meiotic cell cycle;	SMC2; structural maintenance of chromosome 2; K06674;	NP_001325474.1 Structural maintenance of chromosomes (SMC) family protein [Arabidopsis thaliana]	52	41	33	30
AT1G18420	no change	0.5511728109726928	0.4486252691854161	0.77093268742531	AT1G18420	--	GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009705,plant-type vacuole membrane; GO:0015743,malate transport; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0035618,root hair; GO:0071423,malate transmembrane transport; GO:0098656,anion transmembrane transport;	--	NP_173278.1 aluminum activated malate transporter family protein [Arabidopsis thaliana]	37	29	14	26
AT5G20510	no change	0.6697430887224467	0.4490762340535529	0.7711869201526937	AT5G20510	--	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003712,transcription coregulator activity; GO:0003714,transcription corepressor activity; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_197551.2 alfin-like 5 [Arabidopsis thaliana]	15	12	19	14
AT3G44430	no change	-1.0569547593631654	0.4496898130669138	0.7712410139629334	AT3G44430	--	GO:0008150,biological_process;	--	NP_190029.1 transmembrane protein [Arabidopsis thaliana]	7	11	5	4
AT4G23670	no change	0.28122232638965805	0.4497138171791722	0.7712410139629334	AT4G23670	--	GO:0000325,plant-type vacuole; GO:0005507,copper ion binding; GO:0005829,cytosol; GO:0006952,defense response; GO:0046686,response to cadmium ion;	--	NP_194098.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	1074	1119	726	440
AT1G76140	no change	0.5359164148517497	0.4504089436651446	0.7718304180883228	AT1G76140	--	GO:0004252,serine-type endopeptidase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0070012,oligopeptidase activity;	PREP; prolyl oligopeptidase [EC:3.4.21.26]; K01322;	NP_001117606.1 Prolyl oligopeptidase family protein [Arabidopsis thaliana]	406	331	244	208
AT5G03430	no change	-0.3192604741396279	0.4506640476539283	0.7718304180883228	AT5G03430	--	GO:0003824,catalytic activity; GO:0003919,FMN adenylyltransferase activity; GO:0006747,FAD biosynthetic process;	--	NP_568117.1 phosphoadenosine phosphosulfate (PAPS) reductase family protein [Arabidopsis thaliana]	151	117	119	78
AT1G31800	no change	-0.3485801754920299	0.4529697951961868	0.7752576521683224	AT1G31800	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010291,carotene beta-ring hydroxylase activity; GO:0016117,carotenoid biosynthetic process; GO:0016123,xanthophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	LUT5, CYP97A3; beta-ring hydroxylase [EC:1.14.-.-]; K15747;	NP_564384.1 cytochrome P450, family 97, subfamily A, polypeptide 3 [Arabidopsis thaliana]	274	307	223	158
AT3G13772	no change	0.4875230648438915	0.4542869556521162	0.7762088528132427	AT3G13772	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006811,ion transport; GO:0006878,cellular copper ion homeostasis; GO:0006882,cellular zinc ion homeostasis; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0072657,protein localization to membrane;	--	NP_187991.1 transmembrane nine 7 [Arabidopsis thaliana]	482	441	260	217
AT2G37100	no change	0.736206982428552	0.4543522539040049	0.7762088528132427	AT2G37100	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_181247.1 protamine P1 family protein [Arabidopsis thaliana]	21	8	14	11
AT1G68870	no change	-0.8011603997005174	0.454440546440759	0.7762088528132427	AT1G68870	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009690,cytokinin metabolic process; GO:0009691,cytokinin biosynthetic process; GO:0009736,cytokinin-activated signaling pathway;	--	NP_177053.1 SOB five-like 2 [Arabidopsis thaliana]	24	19	5	4
AT5G39590	no change	-0.3024671246465038	0.45483324015822185	0.7763585487610158	AT5G39590	--	GO:0009536,plastid;	--	NP_198775.1 TLD-domain containing nucleolar protein [Arabidopsis thaliana]	169	173	150	78
AT3G02040	no change	-0.4718345163891797	0.4552772112617496	0.7765955111669924	AT3G02040	--	GO:0000287,magnesium ion binding; GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity; GO:0008889,glycerophosphodiester phosphodiesterase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0030643,cellular phosphate ion homeostasis; GO:0046475,glycerophospholipid catabolic process; GO:0071456,cellular response to hypoxia;	GDE1; glycerophosphodiester phosphodiesterase [EC:3.1.4.46]; K18696;	NP_566159.1 senescence-related gene 3 [Arabidopsis thaliana]	76	59	33	32
AT2G40200	no change	-0.917005906001254	0.4560292981707426	0.7768233727229683	AT2G40200	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity;	--	NP_181549.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	16	5	9	6
AT4G37470	no change	0.3066540741213659	0.4561543882613691	0.7768233727229683	AT4G37470	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009640,photomorphogenesis; GO:0009704,de-etiolation; GO:0016787,hydrolase activity; GO:0080167,response to karrikin;	--	NP_195463.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	263	218	215	204
AT3G52160	no change	0.5067659298021105	0.4566174253379868	0.7768233727229683	AT3G52160	--	GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	ABK28598.1 unknown, partial [Arabidopsis thaliana]	141	127	41	36
AT4G32670	no change	-0.4948498370187835	0.4570679525697776	0.7768233727229683	AT4G32670	--	GO:0005789,endoplasmic reticulum membrane; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway;	MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]; K10661;	NP_001320116.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	44	54	27	34
AT3G20740	no change	-0.4538787237224344	0.458151642110266	0.7768233727229683	AT3G20740	--	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005677,chromatin silencing complex; GO:0006325,chromatin organization; GO:0006349,regulation of gene expression by genomic imprinting; GO:0009409,response to cold; GO:0009910,negative regulation of flower development; GO:0010048,vernalization response; GO:0016571,histone methylation; GO:0031491,nucleosome binding; GO:0035098,ESC/E(Z) complex; GO:0043078,polar nucleus; GO:2000014,regulation of endosperm development;	--	NP_188710.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	91	99	74	37
AT3G48320	no change	0.9968418223369556	0.4581914701116656	0.7768233727229683	AT3G48320	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_680111.1 cytochrome P450, family 71, subfamily A, polypeptide 21 [Arabidopsis thaliana]	15	3	9	5
AT5G51020	no change	0.4841595470324674	0.4586146422333222	0.7768233727229683	AT5G51020	--	GO:0000302,response to reactive oxygen species; GO:0006952,defense response; GO:0007049,cell cycle; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0016829,lyase activity; GO:0017009,protein-phycocyanobilin linkage; GO:0043572,plastid fission; GO:0046741,transport of virus in host, tissue to tissue; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0098586,cellular response to virus;	--	NP_199915.1 crumpled leaf [Arabidopsis thaliana]	52	32	19	37
AT3G26740	no change	0.5401048450080648	0.4588094183021239	0.7768233727229683	AT3G26740	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0007623,circadian rhythm; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0098807,chloroplast thylakoid membrane protein complex;	--	NP_189308.1 CCR-like protein [Arabidopsis thaliana]	743	669	804	553
AT4G29830	no change	0.5309145506349395	0.4589694024598169	0.7768233727229683	AT4G29830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009908,flower development; GO:0009910,negative regulation of flower development; GO:0010452,histone H3-K36 methylation; GO:0016441,post-transcriptional gene silencing; GO:0016593,Cdc73/Paf1 complex; GO:0051568,histone H3-K4 methylation; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:1904278,positive regulation of wax biosynthetic process;	WDR61, REC14, SKI8; WD repeat-containing protein 61; K12602;	NP_194712.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	161	168	132	135
AT1G12020	no change	0.9868059121190952	0.4597057468026034	0.7768233727229683	AT1G12020	--	GO:0005575,cellular_component;	--	NP_001318984.1 hypothetical protein AT1G12020 [Arabidopsis thaliana]	7	5	9	6
AT5G39520	no change	-0.3730339468747763	0.4602099356983026	0.7768233727229683	AT5G39520	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0010150,leaf senescence;	--	NP_198768.1 hypothetical protein (DUF1997) [Arabidopsis thaliana]	74	54	49	29
AT5G47870	no change	-0.3793812381663795	0.4602402325239179	0.7768233727229683	AT5G47870	--	GO:0000724,double-strand break repair via homologous recombination; GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_199598.1 cobalt ion-binding protein [Arabidopsis thaliana]	381	380	202	193
AT1G59910	no change	-0.4913424070811381	0.46052187871464045	0.7768233727229683	AT1G59910	--	GO:0003779,actin binding; GO:0030036,actin cytoskeleton organization; GO:0045010,actin nucleation; GO:0051015,actin filament binding;	--	NP_176199.1 Actin-binding FH2 (formin homology 2) family protein [Arabidopsis thaliana]	120	64	53	29
AT3G14415	no change	0.5463179582981326	0.4607552068387208	0.7768233727229683	AT3G14415	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003973,(S)-2-hydroxy-acid oxidase activity; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0010181,FMN binding; GO:0016491,oxidoreductase activity; GO:0042742,defense response to bacterium; GO:0048046,apoplast; GO:0050665,hydrogen peroxide biosynthetic process; GO:0051707,response to other organism;	HAO; (S)-2-hydroxy-acid oxidase [EC:1.1.3.15]; K11517;	NP_001189892.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	1155	965	465	556
AT5G14450	no change	0.3262421901679913	0.4608208850299575	0.7768233727229683	AT5G14450	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_196949.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	101	68	57	84
AT4G23470	no change	0.3143821384095822	0.46086575564190674	0.7768233727229683	AT4G23470	--	GO:0016020,membrane;	--	BAD44288.1 unnamed protein product [Arabidopsis thaliana]	74	85	82	50
AT5G54600	no change	-0.4506958307415001	0.4609091522507576	0.7768233727229683	AT5G54600	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:1990904,ribonucleoprotein complex;	RP-L24, MRPL24, rplX; large subunit ribosomal protein L24; K02895;	NP_851190.1 Translation protein SH3-like family protein [Arabidopsis thaliana]	377	365	201	124
AT1G50310	no change	-0.34233794439670095	0.461049720836652	0.7768233727229683	AT1G50310	--	GO:0008643,carbohydrate transport; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_175449.1 sugar transporter 9 [Arabidopsis thaliana]	316	247	117	105
AT3G17390	no change	-0.38541831542875293	0.4613428403478568	0.7768233727229683	AT3G17390	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004478,methionine adenosyltransferase activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006555,methionine metabolic process; GO:0006556,S-adenosylmethionine biosynthetic process; GO:0006730,one-carbon metabolic process; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0046872,metal ion binding;	metK; S-adenosylmethionine synthetase [EC:2.5.1.6]; K00789;	NP_188365.1 S-adenosylmethionine synthetase family protein [Arabidopsis thaliana]	8500	5716	4672	3892
AT2G33400	no change	-0.3958288200206797	0.4615154968790288	0.7768233727229683	AT2G33400	--	GO:0003674,molecular_function; GO:0007142,male meiosis II;	--	NP_180898.2 FK506-binding nuclear-like protein [Arabidopsis thaliana]	68	51	30	39
AT1G72610	no change	0.33310380667730755	0.4625624538794903	0.7780710146221432	AT1G72610	--	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0030145,manganese ion binding; GO:0031012,extracellular matrix; GO:0046872,metal ion binding; GO:0048046,apoplast;	--	NP_177405.1 germin-like protein 1 [Arabidopsis thaliana]	1495	1532	953	710
AT2G23460	no change	0.5551071537775769	0.4635998400723151	0.7793009200687199	AT2G23460	--	GO:0000166,nucleotide binding; GO:0001664,G protein-coupled receptor binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005834,heterotrimeric G-protein complex; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0007188,adenylate cyclase-modulating G protein-coupled receptor signaling pathway; GO:0019001,guanyl nucleotide binding; GO:0031683,G-protein beta/gamma-subunit complex binding; GO:0046872,metal ion binding;	--	NP_565553.1 extra-large G-protein 1 [Arabidopsis thaliana]	131	101	113	68
AT4G02880	no change	0.27150597848677815	0.4645084719966048	0.7798063594960271	AT4G02880	--	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0005634,nucleus; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_001190665.1 ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]	90	89	97	81
AT3G49890	no change	0.617385756282097	0.4648124331342314	0.7798063594960271	AT3G49890	--	GO:0008150,biological_process;	--	NP_190558.1 hypothetical protein AT3G49890 [Arabidopsis thaliana]	21	26	30	7
AT2G40890	no change	0.3149329672439203	0.4648197435581426	0.7798063594960271	AT2G40890	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0009699,phenylpropanoid biosynthetic process; GO:0009805,coumarin biosynthetic process; GO:0009809,lignin biosynthetic process; GO:0009813,flavonoid biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042802,identical protein binding; GO:0043231,intracellular membrane-bounded organelle; GO:0046409,p-coumarate 3-hydroxylase activity; GO:0046872,metal ion binding;	CYP98A, C3'H; 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase [EC:1.14.14.96]; K09754;	NP_850337.1 cytochrome P450, family 98, subfamily A, polypeptide 3 [Arabidopsis thaliana]	321	303	198	175
AT1G79810	no change	-0.5767978734700332	0.46549189528346774	0.780419547757856	AT1G79810	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005829,cytosol; GO:0006513,protein monoubiquitination; GO:0006635,fatty acid beta-oxidation; GO:0007031,peroxisome organization; GO:0009506,plasmodesma; GO:0009640,photomorphogenesis; GO:0016020,membrane; GO:0016558,protein import into peroxisome matrix; GO:0046872,metal ion binding;	PEX2, PXMP3; peroxin-2; K06664;	NP_974183.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]	47	18	19	14
AT1G75820	no change	0.31586449558487306	0.4666166132468621	0.7817901782180803	AT1G75820	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009934,regulation of meristem structural organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0036289,peptidyl-serine autophosphorylation; GO:0043621,protein self-association; GO:0106310,protein serine kinase activity;	E2.7.1.-; kinase [EC:2.7.1.-]; K00924;	AAB58929.1 CLV1 receptor kinase [Arabidopsis thaliana]	137	91	57	32
AT3G03550	no change	-0.36753576155331746	0.46693375212956056	0.781806841559034	AT3G03550	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_566208.1 RING/U-box superfamily protein [Arabidopsis thaliana]	85	54	48	28
AT4G13830	no change	-0.4588682925180727	0.46736942545375826	0.7819344713971303	AT4G13830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010322,regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0061077,chaperone-mediated protein folding; GO:1902395,regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity;	--	NP_001329024.1 DNAJ-like 20 [Arabidopsis thaliana]	130	73	57	42
AT4G02060	no change	-0.37294617633722993	0.46762446580213457	0.7819344713971303	AT4G02060	--	GO:0000166,nucleotide binding; GO:0000347,THO complex; GO:0000727,double-strand break repair via break-induced replication; GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003678,DNA helicase activity; GO:0003697,single-stranded DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006260,DNA replication; GO:0006268,DNA unwinding involved in DNA replication; GO:0006270,DNA replication initiation; GO:0006271,DNA strand elongation involved in DNA replication; GO:0007049,cell cycle; GO:0009555,pollen development; GO:0010182,sugar mediated signaling pathway; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017116,single-stranded DNA helicase activity; GO:0032508,DNA duplex unwinding; GO:0042555,MCM complex; GO:0046872,metal ion binding; GO:0090329,regulation of DNA-templated DNA replication;	MCM7, CDC47; DNA replication licensing factor MCM7 [EC:3.6.4.12]; K02210;	NP_001190655.1 Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis thaliana]	215	196	118	95
AT1G06515	no change	-0.7515923411907899	0.4681179710289505	0.782245723091713	AT1G06515	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009555,pollen development; GO:0016020,membrane; GO:0044877,protein-containing complex binding; GO:0090153,regulation of sphingolipid biosynthetic process; GO:1904222,positive regulation of serine C-palmitoyltransferase activity;	--	NP_001077469.1 transmembrane protein, putative (DUF3317) [Arabidopsis thaliana]	21	10	17	5
AT5G05860	no change	-1.0384663085816612	0.4701897452766351	0.7842438768201972	AT5G05860	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009690,cytokinin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042631,cellular response to water deprivation; GO:0047807,cytokinin 7-beta-glucosyltransferase activity; GO:0048316,seed development; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080062,cytokinin 9-beta-glucosyltransferase activity; GO:1900000,regulation of anthocyanin catabolic process; GO:1901527,abscisic acid-activated signaling pathway involved in stomatal movement;	UGT76C1_2; cytokinin-N-glucosyltransferase [EC:2.4.1.-]; K13493;	NP_196205.1 UDP-glucosyl transferase 76C2 [Arabidopsis thaliana]	9	3	5	8
AT2G01630	no change	0.36620888916900896	0.4702352009161977	0.7842438768201972	AT2G01630	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	GN1_2_3; glucan endo-1,3-beta-glucosidase 1/2/3 [EC:3.2.1.39]; K19891;	NP_565269.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	50	39	60	39
AT5G65710	no change	0.27365433800840133	0.47023817525643263	0.7842438768201972	AT5G65710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010102,lateral root morphogenesis; GO:0010468,regulation of gene expression; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050829,defense response to Gram-negative bacterium; GO:0060866,leaf abscission; GO:0106310,protein serine kinase activity;	--	NP_201372.2 HAESA-like 2 [Arabidopsis thaliana]	166	101	73	68
AT3G28180	no change	0.5456763761024668	0.4709551314612911	0.7849252191021518	AT3G28180	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042803,protein homodimerization activity; GO:0048868,pollen tube development; GO:0071555,cell wall organization; GO:0099402,plant organ development;	--	NP_566835.1 Cellulose-synthase-like C4 [Arabidopsis thaliana]	232	161	128	63
AT3G51390	no change	-0.3922091066314098	0.47192266567033614	0.7851042267122801	AT3G51390	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006612,protein targeting to membrane; GO:0009651,response to salt stress; GO:0009705,plant-type vacuole membrane; GO:0016020,membrane; GO:0016409,palmitoyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0018230,peptidyl-L-cysteine S-palmitoylation; GO:0019706,protein-cysteine S-palmitoyltransferase activity; GO:0099402,plant organ development;	ZDHHC; palmitoyltransferase [EC:2.3.1.225]; K18932;	NP_001326942.1 DHHC-type zinc finger family protein [Arabidopsis thaliana]	94	78	30	34
AT2G03760	no change	0.4914557804601447	0.4721835753006941	0.7851042267122801	AT2G03760	--	GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006952,defense response; GO:0008146,sulfotransferase activity; GO:0009651,response to salt stress; GO:0009751,response to salicylic acid; GO:0016131,brassinosteroid metabolic process; GO:0016740,transferase activity; GO:0051923,sulfation; GO:0080118,brassinosteroid sulfotransferase activity; GO:1990135,flavonoid sulfotransferase activity;	--	NP_178471.1 sulfotransferase 12 [Arabidopsis thaliana]	23	29	25	29
AT1G27350	no change	-0.4860503369133635	0.47225327306138615	0.7851042267122801	AT1G27350	--	GO:0005783,endoplasmic reticulum; GO:0006486,protein glycosylation; GO:0006979,response to oxidative stress; GO:0015031,protein transport; GO:0016020,membrane; GO:0030968,endoplasmic reticulum unfolded protein response;	--	NP_564277.1 Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana]	67	32	32	33
AT1G79040	no change	0.24609888132650415	0.47229649158998066	0.7851042267122801	AT1G79040	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010270,photosystem II oxygen evolving complex assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042651,thylakoid membrane;	psbR; photosystem II 10kDa protein; K03541;	NP_178025.1 photosystem II subunit R [Arabidopsis thaliana]	5278	4399	1887	1632
AT5G46790	no change	0.4459844756423532	0.4726392996067356	0.7851612385764636	AT5G46790	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009536,plastid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0062049,protein phosphatase inhibitor complex; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_001331305.1 PYR1-like 1 [Arabidopsis thaliana]	121	58	91	86
AT2G23470	no change	-0.9327321124142428	0.4730328394436592	0.7853023981631524	AT2G23470	--	GO:0009507,chloroplast; GO:0016020,membrane; GO:0048653,anther development;	--	NP_179928.2 root UVB sensitive protein (Protein of unknown function, DUF647) [Arabidopsis thaliana]	9	14	5	4
AT2G21970	no change	0.2321146619641583	0.47363322111202233	0.7857865369818102	AT2G21970	--	GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009611,response to wounding; GO:0009765,photosynthesis, light harvesting; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0071486,cellular response to high light intensity; GO:0071492,cellular response to UV-A;	--	NP_565524.1 stress enhanced protein 2 [Arabidopsis thaliana]	206	171	93	64
AT1G08590	no change	-0.8699103133669013	0.47404986900436785	0.7859654179909552	AT1G08590	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0106310,protein serine kinase activity;	--	NP_172335.1 Leucine-rich receptor-like protein kinase family protein [Arabidopsis thaliana]	21	10	6	3
AT2G19330	no change	1.0366571304924612	0.4752658475019384	0.7874684777945529	AT2G19330	--	GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_179523.1 plant intracellular ras group-related LRR 6 [Arabidopsis thaliana]	6	4	10	4
AT5G18140	no change	-0.8476530714864126	0.4764677812619903	0.7884445115076991	AT5G18140	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042026,protein refolding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_197315.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	17	4	8	10
AT4G26980	no change	-0.41159494913706673	0.4764745220820595	0.7884445115076991	AT4G26980	--	GO:0003674,molecular_function; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_194428.2 RNI-like superfamily protein [Arabidopsis thaliana]	39	49	32	25
AT1G74420	no change	-0.44638761287060547	0.4784955459636825	0.7911290958706255	AT1G74420	--	GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0008107,galactoside 2-alpha-L-fucosyltransferase activity; GO:0008417,fucosyltransferase activity; GO:0009969,xyloglucan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0032580,Golgi cisterna membrane; GO:0042546,cell wall biogenesis; GO:0071555,cell wall organization;	--	NP_001320577.1 fucosyltransferase 3 [Arabidopsis thaliana]	43	47	29	16
AT4G11440	no change	0.6109810526352053	0.4790553412386687	0.7911290958706255	AT4G11440	--	GO:0000095,S-adenosyl-L-methionine transmembrane transporter activity; GO:0005743,mitochondrial inner membrane; GO:0016020,membrane; GO:1901962,S-adenosyl-L-methionine transmembrane transport;	--	NP_001319903.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	9	29	22	17
AT1G49490	no change	0.4116029488478477	0.47914427672413695	0.7911290958706255	AT1G49490	--	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization;	--	NP_001320463.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	69	73	17	27
AT5G34940	no change	0.48477286477626613	0.4793403009165048	0.7911290958706255	AT5G34940	--	GO:0004566,beta-glucuronidase activity; GO:0005576,extracellular region; GO:0005764,lysosome; GO:0005765,lysosomal membrane; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	HPSE; heparanase [EC:3.2.1.166]; K07964;	NP_851093.1 glucuronidase 3 [Arabidopsis thaliana]	105	141	64	71
AT3G05060	no change	-0.4067380636979792	0.4804933426099657	0.7921490757708802	AT3G05060	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	NOP58; nucleolar protein 58; K14565;	NP_187157.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	479	470	672	496
AT4G38500	no change	-0.37678972706443137	0.48058081453447504	0.7921490757708802	AT4G38500	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane;	--	NP_568044.1 Sept9 (DUF616) [Arabidopsis thaliana]	63	56	55	23
AT1G78820	no change	0.3790870920291596	0.4811482827763286	0.7925711195247613	AT1G78820	--	GO:0005576,extracellular region; GO:0030246,carbohydrate binding; GO:0048046,apoplast;	--	NP_178003.1 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein [Arabidopsis thaliana]	268	255	268	224
AT4G10110	no change	0.39458734807036056	0.48215597328648147	0.7934513179354359	AT4G10110	--	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0062141,nuclear exosome targeting complex;	SF3B4, SAP49; splicing factor 3B subunit 4; K12831;	NP_192749.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	43	35	44	31
AT5G44030	no change	0.25718627438138864	0.4823242129799717	0.7934513179354359	AT5G44030	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009833,plant-type primary cell wall biogenesis; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016759,cellulose synthase activity; GO:0016760,cellulose synthase (UDP-forming) activity; GO:0030244,cellulose biosynthetic process; GO:0042742,defense response to bacterium; GO:0042802,identical protein binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0071555,cell wall organization;	--	NP_199216.2 cellulose synthase A4 [Arabidopsis thaliana]	192	173	105	77
AT1G23010	no change	0.5164228622092981	0.48301875537301814	0.7934513179354359	AT1G23010	--	GO:0005507,copper ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0010073,meristem maintenance; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016491,oxidoreductase activity; GO:0016682,oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor; GO:0046872,metal ion binding;	--	NP_173714.2 Cupredoxin superfamily protein [Arabidopsis thaliana]	220	193	172	151
AT1G01490	no change	0.4647131361141667	0.48316970048292746	0.7934513179354359	AT1G01490	--	GO:0046872,metal ion binding;	--	NP_001321838.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]	62	66	74	32
AT1G80920	no change	-0.30376034884088465	0.4837004092640962	0.7934513179354359	AT1G80920	--	GO:0005634,nucleus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma;	--	NP_178207.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	431	377	261	186
AT3G52470	no change	-0.3965793924043908	0.48396773379950414	0.7934513179354359	AT3G52470	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0098542,defense response to other organism;	--	NP_190815.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	111	100	86	57
AT3G52110	no change	-0.2848100614909965	0.48414832384945544	0.7934513179354359	AT3G52110	--	GO:0003674,molecular_function;	--	NP_001190065.1 interferon-activable protein [Arabidopsis thaliana]	107	96	78	45
AT1G78895	no change	-0.7322150206901572	0.48417677672052334	0.7934513179354359	AT1G78895	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane;	--	NP_565194.1 Reticulon family protein [Arabidopsis thaliana]	19	13	12	5
AT4G33010	no change	-0.42156784108400913	0.4850499920733153	0.7943708042642132	AT4G33010	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004375,glycine dehydrogenase (decarboxylating) activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0005960,glycine cleavage complex; GO:0006544,glycine metabolic process; GO:0006546,glycine catabolic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016594,glycine binding; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0030170,pyridoxal phosphate binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast;	GLDC, gcvP; glycine dehydrogenase [EC:1.4.4.2]; K00281;	NP_195027.1 glycine decarboxylase P-protein 1 [Arabidopsis thaliana]	3187	2897	1328	1041
AT3G25870	no change	-0.41636510826241313	0.48542112622826455	0.7944673737948125	AT3G25870	--	--	--	NP_566782.1 hypothetical protein AT3G25870 [Arabidopsis thaliana]	79	101	53	41
AT4G37550	no change	0.3377054110079589	0.4860016185747005	0.7949062463191598	AT4G37550	--	GO:0000325,plant-type vacuole; GO:0004328,formamidase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	E3.5.1.49; formamidase [EC:3.5.1.49]; K01455;	NP_001031801.1 Acetamidase/Formamidase family protein [Arabidopsis thaliana]	74	100	82	47
AT3G13530	no change	-0.35629754727761753	0.48781526117350726	0.7965720507017016	AT3G13530	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007049,cell cycle; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0045995,regulation of embryonic development; GO:0046777,protein autophosphorylation; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0051510,regulation of unidimensional cell growth; GO:0061387,regulation of extent of cell growth; GO:0106310,protein serine kinase activity; GO:0110165,cellular anatomical entity;	--	NP_187962.1 mitogen-activated protein kinase kinase kinase 7 [Arabidopsis thaliana]	150	133	102	68
AT5G09230	no change	0.5260825705987671	0.4880514746333246	0.7965720507017016	AT5G09230	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006476,protein deacetylation; GO:0008270,zinc ion binding; GO:0009873,ethylene-activated signaling pathway; GO:0016740,transferase activity; GO:0019213,deacetylase activity; GO:0031348,negative regulation of defense response; GO:0033558,protein lysine deacetylase activity; GO:0034979,NAD-dependent protein deacetylase activity; GO:0042742,defense response to bacterium; GO:0043970,histone H3-K9 acetylation; GO:0046872,metal ion binding; GO:0051287,NAD binding; GO:0070403,NAD+ binding;	SIRT4, SIR2L4; NAD+-dependent protein deacetylase sirtuin 4 [EC:2.3.1.286]; K11414;	NP_568207.1 sirtuin 2 [Arabidopsis thaliana]	55	46	34	27
AT5G60400	no change	0.4481877645068515	0.4886477059356731	0.7965720507017016	AT5G60400	--	--	--	NP_974968.1 hypothetical protein AT5G60400 [Arabidopsis thaliana]	75	53	62	38
AT3G58140	no change	-0.2832575054031734	0.48875691199655874	0.7965720507017016	AT3G58140	--	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004826,phenylalanine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006412,translation; GO:0006432,phenylalanyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016874,ligase activity; GO:0043039,tRNA aminoacylation;	FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]; K01889;	NP_567061.1 phenylalanyl-tRNA synthetase class IIc family protein [Arabidopsis thaliana]	226	176	141	120
AT3G13000	no change	0.4264864942781559	0.4893234175458735	0.7965720507017016	AT3G13000	--	GO:0000325,plant-type vacuole; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription;	--	NP_001327605.1 ubiquinone biosynthesis protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]	46	17	44	38
AT5G16780	no change	-0.30060857493545345	0.4895022351111851	0.7965720507017016	AT5G16780	--	GO:0000398,mRNA splicing, via spliceosome; GO:0000481,maturation of 5S rRNA; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009908,flower development; GO:0009933,meristem structural organization; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0045292,mRNA cis splicing, via spliceosome; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0048364,root development; GO:0048366,leaf development; GO:0048367,shoot system development; GO:0048528,post-embryonic root development;	SART1, HAF, SNU66; U4/U6.U5 tri-snRNP-associated protein 1; K11984;	NP_001318573.1 SART-1 family [Arabidopsis thaliana]	200	155	143	105
AT5G61930	no change	-0.6186492979985356	0.4898420081697985	0.7965720507017016	AT5G61930	--	GO:0003723,RNA binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_001119475.1 APO RNA-binding protein (DUF794) [Arabidopsis thaliana]	30	21	18	5
AT2G48030	no change	0.4656380228999186	0.4898673412928932	0.7965720507017016	AT2G48030	--	GO:0003824,catalytic activity; GO:0005783,endoplasmic reticulum; GO:0006506,GPI anchor biosynthetic process;	--	NP_001325107.1 DNAse I-like superfamily protein [Arabidopsis thaliana]	123	96	59	57
AT3G21220	no change	-0.37923148382534855	0.4903455724318974	0.7965720507017016	AT3G21220	--	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004708,MAP kinase kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0009738,abscisic acid-activated signaling pathway; GO:0010082,regulation of root meristem growth; GO:0010227,floral organ abscission; GO:0010229,inflorescence development; GO:0010365,positive regulation of ethylene biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0051301,cell division; GO:0051510,regulation of unidimensional cell growth; GO:0090333,regulation of stomatal closure; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity;	MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2]; K13413;	NP_001319606.1 MAP kinase kinase 5 [Arabidopsis thaliana]	103	61	64	43
AT4G16990	no change	-0.5400629724105492	0.4903498684693906	0.7965720507017016	AT4G16990	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003953,NAD+ nucleosidase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016787,hydrolase activity; GO:0043531,ADP binding; GO:0050135,NAD(P)+ nucleosidase activity; GO:0050832,defense response to fungus; GO:0061809,NAD+ nucleotidase, cyclic ADP-ribose generating; GO:2000071,regulation of defense response by callose deposition;	--	NP_001329874.1 disease resistance protein (TIR-NBS class) [Arabidopsis thaliana]	42	38	20	20
AT5G02760	no change	-0.961658531468089	0.4904630268957038	0.7965720507017016	AT5G02760	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0043169,cation binding; GO:0046872,metal ion binding; GO:1900056,negative regulation of leaf senescence;	--	NP_195896.2 Protein phosphatase 2C family protein [Arabidopsis thaliana]	6	16	3	5
AT5G20940	no change	0.3257935066188553	0.4907965680909772	0.7966039851636305	AT5G20940	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009251,glucan catabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	bglX; beta-glucosidase [EC:3.2.1.21]; K05349;	NP_197594.2 Glycosyl hydrolase family protein [Arabidopsis thaliana]	82	73	40	43
AT2G45810	no change	0.38234626520800497	0.49110870440932664	0.7966039851636305	AT2G45810	--	GO:0000166,nucleotide binding; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0010494,cytoplasmic stress granule; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017148,negative regulation of translation; GO:0033962,P-body assembly; GO:0034063,stress granule assembly; GO:0051028,mRNA transport;	DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]; K12614;	NP_182105.1 DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	144	129	122	96
AT1G26220	no change	0.6526751224547258	0.4917584452755471	0.7970313737547577	AT1G26220	--	GO:0005737,cytoplasm; GO:0008080,N-acetyltransferase activity; GO:0009507,chloroplast; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0043231,intracellular membrane-bounded organelle;	SNAT; aralkylamine N-acetyltransferase [EC:2.3.1.87]; K22450;	NP_173946.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	16	18	13	9
AT3G11560	no change	0.4656336347953261	0.4925890834141577	0.7970313737547577	AT3G11560	--	GO:0003674,molecular_function; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016020,membrane;	--	NP_001078136.1 LETM1-like protein [Arabidopsis thaliana]	231	177	127	114
AT1G72190	no change	-0.6015559965032438	0.49341305231004107	0.7970313737547577	AT1G72190	--	GO:0008863,formate dehydrogenase (NAD+) activity; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0051287,NAD binding;	--	NP_177364.2 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	29	20	10	7
AT3G61820	no change	0.44367712785700064	0.4934644888097542	0.7970313737547577	AT3G61820	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma;	--	NP_191741.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	1089	988	758	528
AT4G40000	no change	-0.5586711510945639	0.4935394919010593	0.7970313737547577	AT4G40000	--	GO:0000049,tRNA binding; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0008033,tRNA processing; GO:0008168,methyltransferase activity; GO:0016428,tRNA (cytosine-5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0030488,tRNA methylation; GO:0032259,methylation;	--	NP_195710.3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	94	68	36	91
AT2G47640	no change	0.27560481021165106	0.4935416406873652	0.7970313737547577	AT2G47640	--	GO:0000387,spliceosomal snRNP assembly; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005682,U5 snRNP; GO:0005685,U1 snRNP; GO:0005686,U2 snRNP; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0030532,small nuclear ribonucleoprotein complex; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:1990904,ribonucleoprotein complex;	SNRPD2, SMD2; small nuclear ribonucleoprotein D2; K11096;	NP_001078331.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	115	85	64	67
AT1G48840	no change	0.4702702296825088	0.4940418745737843	0.7970313737547577	AT1G48840	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_175315.2 heat-inducible transcription repressor (DUF639) [Arabidopsis thaliana]	24	25	26	26
AT2G30770	no change	1.9367155905368472	0.4941225913297353	0.7970313737547577	AT2G30770	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0006952,defense response; GO:0016020,membrane; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016829,lyase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0047720,indoleacetaldoxime dehydratase activity;	CYP71A13; indoleacetaldoxime dehydratase [EC:4.99.1.6]; K11868;	NP_180635.3 cytochrome P450 family 71 polypeptide [Arabidopsis thaliana]	17	14	0	15
AT4G31400	no change	0.8684817260927922	0.4941907692671936	0.7970313737547577	AT4G31400	--	GO:0000070,mitotic sister chromatid segregation; GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0007049,cell cycle; GO:0007062,sister chromatid cohesion; GO:0007064,mitotic sister chromatid cohesion; GO:0009553,embryo sac development; GO:0009793,embryo development ending in seed dormancy; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0034089,establishment of meiotic sister chromatid cohesion; GO:0045132,meiotic chromosome segregation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0048609,multicellular organismal reproductive process; GO:0048653,anther development; GO:0051177,meiotic sister chromatid cohesion; GO:0051301,cell division; GO:0051321,meiotic cell cycle; GO:0060772,leaf phyllotactic patterning; GO:0061733,peptide-lysine-N-acetyltransferase activity; GO:0080186,developmental vegetative growth;	--	NP_194868.2 protein CTF7 [Arabidopsis thaliana]	5	15	7	7
AT5G01990	no change	0.4990054882824424	0.4952851809306851	0.7978954477627656	AT5G01990	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:0080162,endoplasmic reticulum to cytosol auxin transport;	--	NP_195819.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	167	139	82	90
AT3G01140	no change	0.3493183726631166	0.4953535589254104	0.7978954477627656	AT3G01140	MYB	GO:0000902,cell morphogenesis; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010091,trichome branching; GO:0035017,cuticle pattern formation; GO:1901957,regulation of cutin biosynthetic process;	--	NP_001326423.1 myb domain protein 106 [Arabidopsis thaliana]	71	46	48	33
AT1G59710	no change	0.3678308413511644	0.496704846525392	0.799099741189493	AT1G59710	--	GO:0005634,nucleus;	--	NP_564751.1 actin cross-linking protein (DUF569) [Arabidopsis thaliana]	56	50	33	36
AT5G61030	no change	0.2742028982291078	0.497220255719487	0.799099741189493	AT5G61030	--	GO:0003676,nucleic acid binding; GO:0003697,single-stranded DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0009409,response to cold; GO:0016554,cytidine to uridine editing; GO:0080156,mitochondrial mRNA modification; GO:1990904,ribonucleoprotein complex;	HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3; K12741;	NP_001330940.1 glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]	153	156	135	101
AT3G52430	no change	-0.5906830708649267	0.4977007898049248	0.799099741189493	AT3G52430	--	GO:0001666,response to hypoxia; GO:0002213,defense response to insect; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009751,response to salicylic acid; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0010150,leaf senescence; GO:0010225,response to UV-C; GO:0010310,regulation of hydrogen peroxide metabolic process; GO:0010618,aerenchyma formation; GO:0010942,positive regulation of cell death; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0031348,negative regulation of defense response; GO:0042742,defense response to bacterium; GO:0050829,defense response to Gram-negative bacterium; GO:0051707,response to other organism; GO:0060866,leaf abscission; GO:0071327,cellular response to trehalose stimulus; GO:0080142,regulation of salicylic acid biosynthetic process; GO:0080151,positive regulation of salicylic acid mediated signaling pathway; GO:0106093,EDS1 disease-resistance complex; GO:1900367,positive regulation of defense response to insect; GO:1900426,positive regulation of defense response to bacterium; GO:1901183,positive regulation of camalexin biosynthetic process; GO:2000022,regulation of jasmonic acid mediated signaling pathway; GO:2000031,regulation of salicylic acid mediated signaling pathway;	--	NP_190811.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	20	18	16	11
AT5G66040	no change	0.45932942524949194	0.4979116181929149	0.799099741189493	AT5G66040	--	GO:0004792,thiosulfate sulfurtransferase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity;	--	NP_851278.1 sulfurtransferase protein 16 [Arabidopsis thaliana]	30	36	27	18
AT2G36470	no change	0.6919577619847157	0.4979824692909661	0.799099741189493	AT2G36470	--	--	--	NP_565847.1 DUF868 family protein, putative (DUF868) [Arabidopsis thaliana]	15	11	10	11
AT1G20830	no change	-0.47915524426220735	0.49824920884723817	0.799099741189493	AT1G20830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0031972,chloroplast intermembrane space;	--	NP_173507.1 multiple chloroplast division site 1 [Arabidopsis thaliana]	41	47	44	21
AT5G47910	no change	-0.3919014928687137	0.4982991313429176	0.799099741189493	AT5G47910	--	GO:0000293,ferric-chelate reductase activity; GO:0004601,peroxidase activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007231,osmosensory signaling pathway; GO:0009408,response to heat; GO:0009536,plastid; GO:0009611,response to wounding; GO:0016020,membrane; GO:0016174,NAD(P)H oxidase H2O2-forming activity; GO:0016491,oxidoreductase activity; GO:0033500,carbohydrate homeostasis; GO:0043069,negative regulation of programmed cell death; GO:0046872,metal ion binding; GO:0050664,oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor; GO:0050832,defense response to fungus; GO:0071456,cellular response to hypoxia; GO:0072593,reactive oxygen species metabolic process; GO:0098869,cellular oxidant detoxification;	RBOH; respiratory burst oxidase [EC:1.6.3.- 1.11.1.-]; K13447;	NP_199602.1 respiratory burst oxidase homologue D [Arabidopsis thaliana]	190	201	169	130
AT3G55420	no change	-0.5702638070708872	0.4991323425087909	0.7993800217685061	AT3G55420	--	--	--	NP_191102.1 hypothetical protein AT3G55420 [Arabidopsis thaliana]	25	26	9	17
AT1G31335	no change	-0.8330777249643333	0.49928728073505846	0.7993800217685061	AT1G31335	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_564378.1 transmembrane protein [Arabidopsis thaliana]	20	7	7	4
AT3G29030	no change	0.40907303008905593	0.5001380870865026	0.7993800217685061	AT3G29030	--	GO:0005576,extracellular region; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0009826,unidimensional cell growth; GO:0016020,membrane; GO:0071555,cell wall organization; GO:0080022,primary root development;	--	NP_189545.1 expansin A5 [Arabidopsis thaliana]	937	870	487	473
AT2G03690	no change	0.22457984540745457	0.5004720672006866	0.7993800217685061	AT2G03690	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006744,ubiquinone biosynthetic process; GO:0016020,membrane; GO:0031314,extrinsic component of mitochondrial inner membrane;	COQ4; ubiquinone biosynthesis protein COQ4; K18586;	NP_178465.1 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein [Arabidopsis thaliana]	123	97	122	119
AT5G52470	no change	-0.3786857385908302	0.5006069756460646	0.7993800217685061	AT5G52470	--	GO:0000494,box C/D RNA 3'-end processing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0008649,rRNA methyltransferase activity; GO:0009536,plastid; GO:0016740,transferase activity; GO:0030515,snoRNA binding; GO:0031167,rRNA methylation; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0032259,methylation; GO:1990258,histone glutamine methylation; GO:1990259,histone-glutamine methyltransferase activity; GO:1990904,ribonucleoprotein complex;	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]; K14563;	NP_568772.3 fibrillarin 1 [Arabidopsis thaliana]	1167	1182	1108	945
AT3G63180	no change	-0.4999917787328272	0.5007588151755706	0.7993800217685061	AT3G63180	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0042752,regulation of circadian rhythm;	--	NP_191877.2 TIC-like protein [Arabidopsis thaliana]	95	91	46	36
AT3G19380	no change	-0.4675077930869822	0.500859998042294	0.7993800217685061	AT3G19380	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061630,ubiquitin protein ligase activity; GO:0098542,defense response to other organism;	--	NP_566632.1 plant U-box 25 [Arabidopsis thaliana]	30	43	18	21
AT5G54570	no change	0.5744714017579575	0.5009866934069812	0.7993800217685061	AT5G54570	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102483,scopolin beta-glucosidase activity;	E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188;	NP_200268.3 beta glucosidase 41 [Arabidopsis thaliana]	25	24	13	10
AT5G54920	no change	-0.5388096412780818	0.5023351362559366	0.7998242042880385	AT5G54920	--	GO:0003723,RNA binding; GO:0010494,cytoplasmic stress granule; GO:0034063,stress granule assembly;	--	NP_001119437.1 polyadenylate-binding protein interacting protein [Arabidopsis thaliana]	18	28	23	12
AT4G24390	no change	-0.5179895736453126	0.5026586421663088	0.7998242042880385	AT4G24390	--	GO:0000822,inositol hexakisphosphate binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009734,auxin-activated signaling pathway; GO:0010011,auxin binding; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process;	--	NP_567702.2 RNI-like superfamily protein [Arabidopsis thaliana]	26	26	31	10
AT3G03320	no change	0.6734329412836786	0.5029860860341975	0.7998242042880385	AT3G03320	--	GO:0008150,biological_process;	--	NP_566202.1 RNA-binding ASCH domain protein [Arabidopsis thaliana]	8	24	15	9
AT1G49750	no change	0.37479552367677194	0.5030453614537934	0.7998242042880385	AT1G49750	--	GO:0005634,nucleus;	--	NP_175397.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	421	459	251	242
AT5G43190	no change	0.6411590329192833	0.5038060948836388	0.7998242042880385	AT5G43190	--	GO:0005515,protein binding;	--	NP_568622.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	12	16	13	12
AT4G20360	no change	0.30097086169697906	0.5042818425637275	0.7998242042880385	AT4G20360	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0042644,chloroplast nucleoid; GO:0048046,apoplast; GO:0048366,leaf development; GO:0070125,mitochondrial translational elongation;	tuf, TUFM; elongation factor Tu; K02358;	NP_001329775.1 RAB GTPase homolog E1B [Arabidopsis thaliana]	6167	6520	4893	3518
AT1G79270	no change	0.3388430060622003	0.5047885477722247	0.7998242042880385	AT1G79270	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_565205.1 evolutionarily conserved C-terminal region 8 [Arabidopsis thaliana]	45	58	52	42
AT4G39270	no change	-1.0440103319015035	0.5048770698868851	0.7998242042880385	AT4G39270	--	GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_001329133.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	11	9	4	1
AT5G18970	no change	-0.4233221033062798	0.5049613675220096	0.7998242042880385	AT5G18970	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_197398.1 AWPM-19-like family protein [Arabidopsis thaliana]	44	42	25	17
AT1G24320	no change	-0.774414215777508	0.5050927717180927	0.7998242042880385	AT1G24320	--	GO:0004573,Glc3Man9GlcNAc2 oligosaccharide glucosidase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005975,carbohydrate metabolic process; GO:0006487,protein N-linked glycosylation; GO:0008152,metabolic process; GO:0009311,oligosaccharide metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds;	MOGS; mannosyl-oligosaccharide glucosidase [EC:3.2.1.106]; K01228;	NP_173842.2 Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]	21	4	7	12
AT1G17970	no change	-0.5116659984695602	0.5051116442785518	0.7998242042880385	AT1G17970	--	GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_173239.1 RING/U-box superfamily protein [Arabidopsis thaliana]	21	23	21	17
AT3G18950	no change	0.8062555669212479	0.5052976822167337	0.7998242042880385	AT3G18950	--	GO:0005515,protein binding;	--	NP_188525.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	7	12	5	3
AT1G68290	no change	-0.3704295302466036	0.505772138568067	0.7998242042880385	AT1G68290	--	GO:0000014,single-stranded DNA endodeoxyribonuclease activity; GO:0003676,nucleic acid binding; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004521,endoribonuclease activity; GO:0006308,DNA catabolic process; GO:0008309,double-stranded DNA exodeoxyribonuclease activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0043765,T/G mismatch-specific endonuclease activity; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	E3.1.30.1; nuclease S1 [EC:3.1.30.1]; K05986;	NP_176996.1 endonuclease 2 [Arabidopsis thaliana]	67	44	36	24
AT5G15760	no change	0.6958694469499385	0.5058598221523101	0.7998242042880385	AT5G15760	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:1990904,ribonucleoprotein complex;	--	NP_197080.1 Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]	13	6	16	10
AT4G18060	no change	-0.2658902779537309	0.5059791626340833	0.7998242042880385	AT4G18060	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle;	--	NP_193540.3 SH3 domain-containing protein [Arabidopsis thaliana]	175	108	80	60
AT5G01830	no change	-0.9953413493577372	0.5064683186484185	0.8001004785600403	AT5G01830	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0016740,transferase activity;	--	NP_195803.1 ARM repeat superfamily protein [Arabidopsis thaliana]	22	2	5	3
AT1G04230	no change	-0.43844269478000086	0.5085064139123825	0.8028218507487677	AT1G04230	--	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0030688,preribosome, small subunit precursor;	--	NP_171919.3 rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]	35	26	33	19
AT2G20650	no change	-0.532252634666257	0.5091558916457088	0.8033159318849761	AT2G20650	--	GO:0004842,ubiquitin-protein transferase activity; GO:0009827,plant-type cell wall modification; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_179657.2 RING/U-box superfamily protein [Arabidopsis thaliana]	27	24	18	10
AT5G55490	no change	-0.8491616973478564	0.5094506538555408	0.8033159318849761	AT5G55490	--	GO:0005886,plasma membrane; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0042802,identical protein binding;	--	NP_001330005.1 gamete expressed protein 1 [Arabidopsis thaliana]	8	17	4	2
AT3G26580	no change	0.4793942001832931	0.5103719168617036	0.8037915315488406	AT3G26580	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_189290.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	343	265	319	186
AT4G33630	no change	0.451029981327574	0.5103839351602855	0.8037915315488406	AT4G33630	--	GO:0000304,response to singlet oxygen; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010343,singlet oxygen-mediated programmed cell death; GO:0042651,thylakoid membrane;	--	NP_001328575.1 UvrB/UvrC domain protein (DUF3506) [Arabidopsis thaliana]	237	172	227	131
AT1G06790	no change	-0.5343618419080816	0.5111729696408833	0.8042939111776519	AT1G06790	--	GO:0000428,DNA-directed RNA polymerase complex; GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006351,DNA-templated transcription; GO:0006352,DNA-templated transcription initiation; GO:0006384,transcription initiation at RNA polymerase III promoter; GO:0008380,RNA splicing; GO:0016070,RNA metabolic process;	RPC8, POLR3H; DNA-directed RNA polymerase III subunit RPC8; K03022;	NP_172164.1 RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana]	24	21	17	13
AT3G09580	no change	-0.5570555245230171	0.5113349895031202	0.8042939111776519	AT3G09580	--	GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity;	--	NP_187569.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	42	29	17	10
AT4G01310	no change	-0.4189611424534263	0.5120176120861366	0.8044571888844525	AT4G01310	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex;	RP-L5, MRPL5, rplE; large subunit ribosomal protein L5; K02931;	NP_192040.1 Ribosomal L5P family protein [Arabidopsis thaliana]	963	799	337	277
AT2G01870	no change	-0.9770326349775332	0.5123764386384316	0.8044571888844525	AT2G01870	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane;	--	NP_565278.1 transmembrane protein [Arabidopsis thaliana]	7	12	8	1
AT2G26975	no change	0.5439224470620196	0.5123870739417279	0.8044571888844525	AT2G26975	--	GO:0000325,plant-type vacuole; GO:0005375,copper ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0035434,copper ion transmembrane transport;	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1; K14686;	NP_850091.1 Ctr copper transporter family [Arabidopsis thaliana]	51	21	8	18
AT2G19180	no change	-0.6628843957448325	0.5128231546190402	0.8044981872446831	AT2G19180	--	--	--	NP_001325144.1 hypothetical protein AT2G19180 [Arabidopsis thaliana]	21	6	11	15
AT5G59030	no change	0.3870903193073101	0.5130454058538785	0.8044981872446831	AT5G59030	--	GO:0005375,copper ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0035434,copper ion transmembrane transport; GO:0048235,pollen sperm cell differentiation; GO:0048364,root development;	SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1; K14686;	NP_200711.1 copper transporter 1 [Arabidopsis thaliana]	61	63	56	23
AT3G07180	no change	-0.24752148537444452	0.5138602817319273	0.8052798134284207	AT3G07180	--	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006506,GPI anchor biosynthetic process; GO:0016020,membrane; GO:0016255,attachment of GPI anchor to protein; GO:0042765,GPI-anchor transamidase complex;	PIGS; GPI-anchor transamidase subunit S; K05291;	NP_187374.2 GPI transamidase component PIG-S-like protein [Arabidopsis thaliana]	486	423	321	326
AT1G31490	no change	-0.6009474327183675	0.5144339460148118	0.8056827031431977	AT1G31490	--	GO:0005507,copper ion binding; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0016740,transferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0048038,quinone binding;	--	NP_174434.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	18	27	9	10
AT5G49650	no change	0.34854440456444635	0.5160527190773909	0.8077208917908733	AT5G49650	--	GO:0000166,nucleotide binding; GO:0004856,xylulokinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005997,xylulose metabolic process; GO:0009536,plastid; GO:0016117,carotenoid biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0042732,D-xylose metabolic process; GO:0046835,carbohydrate phosphorylation;	xylB, XYLB; xylulokinase [EC:2.7.1.17]; K00854;	NP_199776.1 xylulose kinase-2 [Arabidopsis thaliana]	354	410	202	178
AT4G11450	no change	-0.41778861184421423	0.5164047152270469	0.8077750462525104	AT4G11450	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_192884.1 bromo-adjacent domain protein, putative (DUF3527) [Arabidopsis thaliana]	50	23	47	26
AT2G44350	no change	0.3486218132019818	0.5184349218965635	0.8104526266749104	AT2G44350	--	GO:0004108,citrate (Si)-synthase activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006099,tricarboxylic acid cycle; GO:0006101,citrate metabolic process; GO:0008270,zinc ion binding; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0016740,transferase activity; GO:0036440,citrate synthase activity; GO:0046912,acyltransferase activity, acyl groups converted into alkyl on transfer;	CS, gltA; citrate synthase [EC:2.3.3.1]; K01647;	NP_001324514.1 Citrate synthase family protein [Arabidopsis thaliana]	697	691	556	453
AT5G58375	no change	0.36402780661819456	0.5203382930268867	0.8129287635073215	AT5G58375	--	GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_568877.1 Methyltransferase-related protein [Arabidopsis thaliana]	43	37	37	34
AT3G26130	no change	0.8868220440599224	0.5213101085916213	0.8139473781384517	AT3G26130	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016985,mannan endo-1,4-beta-mannosidase activity; GO:0071704,organic substance metabolic process;	--	NP_001327393.1 Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	9	4	13	3
AT1G44120	no change	0.287924778012834	0.5222768323062206	0.8145491857953253	AT1G44120	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0008017,microtubule binding; GO:0008360,regulation of cell shape; GO:0010330,cellulose synthase complex; GO:0016020,membrane; GO:0051211,anisotropic cell growth; GO:0071555,cell wall organization; GO:2001006,regulation of cellulose biosynthetic process;	--	NP_001321524.1 CELLULOSE SYNTHASE INTERACTIVE 2 [Arabidopsis thaliana]	134	64	58	52
AT4G16190	no change	-0.4287657396152724	0.5223356664903619	0.8145491857953253	AT4G16190	--	GO:0000323,lytic vacuole; GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process;	CTSF; cathepsin F [EC:3.4.22.41]; K01373;	NP_567489.1 Papain family cysteine protease [Arabidopsis thaliana]	4784	4377	1999	1611
AT1G75540	no change	0.450810026206554	0.5231280225747191	0.814897765969843	AT1G75540	DBB	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009640,photomorphogenesis; GO:0009641,shade avoidance; GO:0010117,photoprotection; GO:0046872,metal ion binding; GO:1905157,positive regulation of photosynthesis;	--	NP_177686.1 salt tolerance homolog2 [Arabidopsis thaliana]	60	12	31	43
AT3G54050	no change	0.35018382791887426	0.5239924790947803	0.814897765969843	AT3G54050	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005985,sucrose metabolic process; GO:0005986,sucrose biosynthetic process; GO:0006000,fructose metabolic process; GO:0006002,fructose 6-phosphate metabolic process; GO:0006094,gluconeogenesis; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0042132,fructose 1,6-bisphosphate 1-phosphatase activity; GO:0042578,phosphoric ester hydrolase activity; GO:0046872,metal ion binding; GO:0048046,apoplast;	FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11]; K03841;	NP_001190083.1 high cyclic electron flow 1 [Arabidopsis thaliana]	2424	2412	1530	1167
AT5G67180	no change	-0.44700279851415736	0.5242061246498533	0.814897765969843	AT5G67180	AP2	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway;	--	NP_201519.1 target of early activation tagged (EAT) 3 [Arabidopsis thaliana]	42	35	18	28
AT2G39435	no change	-0.7808737597671556	0.5242287350725545	0.814897765969843	AT2G39435	--	--	--	NP_001189712.1 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]	7	10	6	10
AT1G66520	no change	-0.5414703792954203	0.5243904838914996	0.814897765969843	AT1G66520	--	GO:0003824,catalytic activity; GO:0004479,methionyl-tRNA formyltransferase activity; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0009058,biosynthetic process; GO:0016740,transferase activity; GO:0016742,hydroxymethyl-, formyl- and related transferase activity; GO:0071951,conversion of methionyl-tRNA to N-formyl-methionyl-tRNA;	MTFMT, fmt; methionyl-tRNA formyltransferase [EC:2.1.2.9]; K00604;	NP_176825.1 formyltransferase [Arabidopsis thaliana]	19	22	22	9
AT1G22030	no change	-0.5370708901539345	0.5251053750980719	0.814897765969843	AT1G22030	--	GO:0005575,cellular_component;	--	NP_564155.1 BPS1-like protein [Arabidopsis thaliana]	28	36	14	22
AT2G31390	no change	-0.3701123298756084	0.5252813967676204	0.814897765969843	AT2G31390	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006000,fructose metabolic process; GO:0008865,fructokinase activity; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019252,starch biosynthetic process; GO:0046835,carbohydrate phosphorylation;	E2.7.1.4, scrK; fructokinase [EC:2.7.1.4]; K00847;	NP_180697.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	989	887	467	399
AT5G08770	no change	0.8070261196074267	0.5253354367573894	0.814897765969843	AT5G08770	--	GO:0008150,biological_process;	--	NP_680159.1 topoisomerase I damage affected-like protein [Arabidopsis thaliana]	12	7	6	7
AT5G14550	no change	0.4671606977175031	0.5254409563679813	0.814897765969843	AT5G14550	--	GO:0000139,Golgi membrane; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_196959.2 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	44	29	32	9
AT2G41120	no change	-0.420685994968542	0.5265256724555153	0.8160827261871415	AT2G41120	--	--	--	NP_181645.1 DUF309 domain protein [Arabidopsis thaliana]	33	25	28	23
AT1G42970	no change	-0.37484065648139087	0.5275702515867433	0.8168954170085668	AT1G42970	--	GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005634,nucleus; GO:0006006,glucose metabolic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0031969,chloroplast membrane; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:1901149,salicylic acid binding;	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298;	NP_174996.1 glyceraldehyde-3-phosphate dehydrogenase B subunit [Arabidopsis thaliana]	1971	1711	1077	847
AT3G11110	no change	1.0283157247182686	0.52769197075131	0.8168954170085668	AT3G11110	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_187722.1 RING/U-box superfamily protein [Arabidopsis thaliana]	8	10	1	5
AT5G24316	no change	0.7606199619310079	0.5282607735558076	0.8169850066248674	AT5G24316	--	--	--	NP_568443.1 proline-rich family protein [Arabidopsis thaliana]	8	9	11	6
AT5G51140	no change	-0.3729035327829031	0.5293219536425404	0.8169850066248674	AT5G51140	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_199927.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	56	35	33	40
AT3G16240	no change	-0.22579200803178168	0.5294369814588871	0.8169850066248674	AT3G16240	--	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009705,plant-type vacuole membrane; GO:0009941,chloroplast envelope; GO:0015200,methylammonium transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042802,identical protein binding; GO:0042807,central vacuole; GO:0055085,transmembrane transport; GO:0072489,methylammonium transmembrane transport;	--	NP_188245.1 delta tonoplast integral protein [Arabidopsis thaliana]	2617	2251	739	584
AT5G62360	no change	0.3909052111349691	0.5296789454793228	0.8169850066248674	AT5G62360	--	GO:0004857,enzyme inhibitor activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009827,plant-type cell wall modification; GO:0043086,negative regulation of catalytic activity;	--	NP_201042.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]	573	431	309	236
AT5G17980	no change	0.4470867156513698	0.5298303557106409	0.8169850066248674	AT5G17980	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_197299.1 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]	78	67	38	36
AT5G01170	no change	-0.6162576519254834	0.5298812558421553	0.8169850066248674	AT5G01170	--	GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0010088,phloem development; GO:0016020,membrane; GO:0030154,cell differentiation; GO:2000280,regulation of root development;	--	NP_195737.1 hypothetical protein (DUF740) [Arabidopsis thaliana]	30	10	12	8
AT1G79820	no change	0.25855962504342545	0.5299969532171537	0.8169850066248674	AT1G79820	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008643,carbohydrate transport; GO:0008645,hexose transmembrane transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015149,hexose transmembrane transporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport;	--	NP_001185440.1 Major facilitator superfamily protein [Arabidopsis thaliana]	84	82	85	52
AT2G25840	no change	0.349931258149871	0.530510305705048	0.8172813123603796	AT2G25840	--	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004830,tryptophan-tRNA ligase activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006436,tryptophanyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009791,post-embryonic development; GO:0016740,transferase activity; GO:0016874,ligase activity; GO:0048481,plant ovule development; GO:0048608,reproductive structure development;	WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]; K01867;	NP_850070.1 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]	205	188	222	164
AT4G16330	no change	0.4887784831124975	0.5314298624357583	0.8176672849820285	AT4G16330	--	GO:0005777,peroxisome; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_567491.5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	56	59	55	37
AT4G18480	no change	-0.2446375914008163	0.5333437685053498	0.8176672849820285	AT4G18480	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010007,magnesium chelatase complex; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016851,magnesium chelatase activity; GO:0016874,ligase activity; GO:0016887,ATP hydrolysis activity;	chlI, bchI; magnesium chelatase subunit I [EC:6.6.1.1]; K03405;	NP_193583.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	777	717	427	365
AT1G18710	no change	0.8497740849438173	0.5335714206111214	0.8176672849820285	AT1G18710	MYB	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0010214,seed coat development; GO:0140547,acquisition of seed longevity;	--	NP_173306.1 myb domain protein 47 [Arabidopsis thaliana]	5	4	8	8
AT1G79390	no change	0.4061775555384912	0.5339952116045461	0.8176672849820285	AT1G79390	--	GO:0003674,molecular_function;	--	NP_565207.1 centrosomal protein [Arabidopsis thaliana]	40	25	39	19
AT4G27040	no change	0.30328247880100356	0.5340237397823236	0.8176672849820285	AT4G27040	--	GO:0000814,ESCRT II complex; GO:0005768,endosome; GO:0015031,protein transport; GO:0043328,protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; GO:0071985,multivesicular body sorting pathway;	SNF8, EAP30; ESCRT-II complex subunit VPS22; K12188;	NP_001119065.1 EAP30/Vps36 family protein [Arabidopsis thaliana]	68	55	61	34
AT3G58130	no change	-0.6517501736881233	0.5341985314955905	0.8176672849820285	AT3G58130	--	GO:0000225,N-acetylglucosaminylphosphatidylinositol deacetylase activity; GO:0005783,endoplasmic reticulum; GO:0006506,GPI anchor biosynthetic process; GO:0016020,membrane; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;	PIGL; N-acetylglucosaminylphosphatidylinositol deacetylase [EC:3.5.1.89]; K03434;	NP_001030882.1 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]	21	12	12	5
AT5G08350	no change	-0.8443583098821037	0.5342909525290499	0.8176672849820285	AT5G08350	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_196452.1 GRAM domain-containing protein / ABA-responsive protein-like protein [Arabidopsis thaliana]	14	7	9	1
AT2G26270	no change	-0.4496339247560037	0.5343379851493232	0.8176672849820285	AT2G26270	--	--	--	NP_001318290.1 BRCT domain DNA repair protein [Arabidopsis thaliana]	35	28	22	18
AT4G00850	no change	0.7706208731809987	0.5346700939754859	0.8176672849820285	AT4G00850	--	GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008283,cell population proliferation; GO:0016020,membrane; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048366,leaf development; GO:0051301,cell division;	--	NP_567194.1 GRF1-interacting factor 3 [Arabidopsis thaliana]	8	2	8	15
AT1G12150	no change	0.3932595017845397	0.5349387553185753	0.8176672849820285	AT1G12150	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement;	--	OAP18398.1 hypothetical protein AXX17_AT1G12540 [Arabidopsis thaliana]	32	54	25	32
AT4G17540	no change	-0.942189364923788	0.5350728538734649	0.8176672849820285	AT4G17540	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_193487.2 dynamin [Arabidopsis thaliana]	11	12	0	7
AT3G21230	no change	0.4665047493855656	0.5353131646560862	0.8176672849820285	AT3G21230	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0009698,phenylpropanoid metabolic process; GO:0009699,phenylpropanoid biosynthetic process; GO:0016207,4-coumarate-CoA ligase activity; GO:0016405,CoA-ligase activity; GO:0016874,ligase activity; GO:0106286,(E)-caffeate-CoA ligase activity;	4CL; 4-coumarate--CoA ligase [EC:6.2.1.12]; K01904;	NP_188760.3 4-coumarate:CoA ligase 5 [Arabidopsis thaliana]	28	42	19	44
AT2G45330	no change	-0.42008123382113194	0.5357521305204822	0.8176672849820285	AT2G45330	--	GO:0000215,tRNA 2'-phosphotransferase activity; GO:0006388,tRNA splicing, via endonucleolytic cleavage and ligation; GO:0008033,tRNA processing; GO:0016740,transferase activity;	--	NP_182058.2 RNA 2'-phosphotransferase, Tpt1 / KptA family [Arabidopsis thaliana]	37	33	18	26
AT1G19300	no change	0.3073091077204708	0.536015826200374	0.8176672849820285	AT1G19300	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0010051,xylem and phloem pattern formation; GO:0010417,glucuronoxylan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0032504,multicellular organism reproduction; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0048366,leaf development; GO:0052386,cell wall thickening; GO:0071555,cell wall organization;	--	NP_564077.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	142	151	85	60
AT5G07950	no change	0.5672427555515522	0.5360883938515516	0.8176672849820285	AT5G07950	--	GO:0008150,biological_process;	--	NP_568186.1 hypothetical protein AT5G07950 [Arabidopsis thaliana]	15	14	16	12
AT5G02560	no change	-0.4034568980210711	0.5361390550602055	0.8176672849820285	AT5G02560	--	GO:0000775,chromosome, centromeric region; GO:0000786,nucleosome; GO:0000792,heterochromatin; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; GO:0070828,heterochromatin organization;	H2A; histone H2A; K11251;	NP_195876.1 histone H2A 12 [Arabidopsis thaliana]	58	37	25	36
AT1G68760	no change	-0.501281980747688	0.5362226713693539	0.8176672849820285	AT1G68760	--	GO:0000210,NAD+ diphosphatase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006203,dGTP catabolic process; GO:0006974,cellular response to DNA damage stimulus; GO:0008413,8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0019177,dihydroneopterin triphosphate pyrophosphohydrolase activity; GO:0035529,NADH pyrophosphatase activity; GO:0035539,8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity; GO:0046872,metal ion binding;	--	NP_177044.1 nudix hydrolase 1 [Arabidopsis thaliana]	27	16	29	14
AT3G58100	no change	-0.32973817836790786	0.5367177403325043	0.8179321252372596	AT3G58100	--	GO:0001872,(1->3)-beta-D-glucan binding; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0070161,anchoring junction;	--	NP_001327504.1 plasmodesmata callose-binding protein 5 [Arabidopsis thaliana]	83	48	32	34
AT2G01680	no change	-0.33448395739075565	0.53723572719384	0.8182315533861897	AT2G01680	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008157,protein phosphatase 1 binding; GO:0016020,membrane; GO:0019888,protein phosphatase regulator activity; GO:0035304,regulation of protein dephosphorylation; GO:0050790,regulation of catalytic activity;	--	NP_565274.1 Ankyrin repeat family protein [Arabidopsis thaliana]	54	60	42	24
AT5G56220	no change	-0.36891033052376	0.5378747499669784	0.8187148556614593	AT5G56220	--	GO:0000725,recombinational repair; GO:0007165,signal transduction; GO:0016787,hydrolase activity;	--	NP_001318809.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	48	71	61	35
AT5G04600	no change	0.28639723448925025	0.5389474308315867	0.8197855106792031	AT5G04600	--	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus;	--	NP_196080.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	156	180	136	89
AT5G16150	no change	-0.3765153746301024	0.539222375197244	0.8197855106792031	AT5G16150	--	GO:0005351,carbohydrate:proton symporter activity; GO:0008643,carbohydrate transport; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_568328.1 plastidic GLC translocator [Arabidopsis thaliana]	1341	1053	632	570
AT1G26800	no change	-0.6236063714177433	0.5403426610181754	0.8207116691541828	AT1G26800	--	GO:0000209,protein polyubiquitination; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051787,misfolded protein binding; GO:0051865,protein autoubiquitination; GO:0061630,ubiquitin protein ligase activity; GO:0061635,regulation of protein complex stability; GO:0071218,cellular response to misfolded protein; GO:0071456,cellular response to hypoxia; GO:0071629,cytoplasm protein quality control by the ubiquitin-proteasome system;	--	NP_564263.1 RING/U-box superfamily protein [Arabidopsis thaliana]	10	25	15	6
AT4G01670	no change	0.783406633732227	0.5404765255412222	0.8207116691541828	AT4G01670	--	--	--	NP_192076.2 hypothetical protein AT4G01670 [Arabidopsis thaliana]	8	4	12	6
AT5G46110	no change	0.3585271505665002	0.5409294766027963	0.8209096708134267	AT5G46110	--	GO:0005794,Golgi apparatus; GO:0008643,carbohydrate transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009643,photosynthetic acclimation; GO:0015120,phosphoglycerate transmembrane transporter activity; GO:0015297,antiporter activity; GO:0015605,organophosphate ester transmembrane transporter activity; GO:0015713,phosphoglycerate transmembrane transport; GO:0015748,organophosphate ester transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0035436,triose phosphate transmembrane transport; GO:0055085,transmembrane transport; GO:0071917,triose-phosphate transmembrane transporter activity;	--	NP_851138.1 Glucose-6-phosphate/phosphate translocator-like protein [Arabidopsis thaliana]	3275	2941	1923	1568
AT2G44140	no change	-0.2251713312403263	0.5413017371219223	0.8209850542165031	AT2G44140	--	GO:0004175,endopeptidase activity; GO:0005575,cellular_component; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity;	ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342;	NP_001324765.1 Peptidase family C54 protein [Arabidopsis thaliana]	90	68	152	83
AT1G08810	no change	0.7308507666229573	0.5416934370736349	0.821089813789399	AT1G08810	MYB_related	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009411,response to UV; GO:0009414,response to water deprivation; GO:0009416,response to light stimulus; GO:0009637,response to blue light; GO:0009646,response to absence of light; GO:0009733,response to auxin; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0010118,stomatal movement; GO:0080148,negative regulation of response to water deprivation; GO:1902074,response to salt;	--	NP_172358.1 myb domain protein 60 [Arabidopsis thaliana]	10	13	5	9
AT1G18900	no change	0.4770697023643642	0.5422783165035081	0.8214870925603739	AT1G18900	--	GO:0005515,protein binding;	--	NP_001319039.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	59	72	51	43
AT3G18370	no change	-0.37682279171046495	0.5436663170350503	0.8224104326161575	AT3G18370	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0008289,lipid binding;	--	NP_566607.1 C2 domain-containing protein [Arabidopsis thaliana]	158	146	124	59
AT1G54790	no change	0.5212654247093269	0.5438042766297534	0.8224104326161575	AT1G54790	--	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds;	--	NP_001185228.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]	24	25	27	6
AT1G18630	no change	-0.4761204334567584	0.5438572723351642	0.8224104326161575	AT1G18630	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0009651,response to salt stress;	--	NP_173298.1 glycine-rich RNA-binding protein 6 [Arabidopsis thaliana]	40	39	22	22
AT3G13445	no change	-0.3620129736574462	0.5442042108793057	0.8224463875818486	AT3G13445	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006352,DNA-templated transcription initiation; GO:0006366,transcription by RNA polymerase II; GO:0016020,membrane; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0140223,general transcription initiation factor activity;	TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein; K03120;	NP_187953.1 TATA binding protein 1 [Arabidopsis thaliana]	54	31	46	22
AT1G12810	no change	-0.42717399596943473	0.5448316197618616	0.8226684592826925	AT1G12810	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_563914.1 proline-rich family protein [Arabidopsis thaliana]	50	70	37	49
AT5G25980	no change	-0.35316823428632205	0.5454916670077167	0.8226684592826925	AT5G25980	--	GO:0000325,plant-type vacuole; GO:0002213,defense response to insect; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle; GO:0102799,glucosinolate glucohydrolase activity;	E3.2.1.147; myrosinase [EC:3.2.1.147]; K01237;	NP_568479.1 glucoside glucohydrolase 2 [Arabidopsis thaliana]	10018	9217	9317	6995
AT1G33360	no change	0.2942746754469949	0.5455853868472869	0.8226684592826925	AT1G33360	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0051082,unfolded protein binding; GO:0051603,proteolysis involved in protein catabolic process; GO:0140662,ATP-dependent protein folding chaperone;	clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX; K03544;	NP_564423.3 ATP-dependent Clp protease [Arabidopsis thaliana]	135	99	81	54
AT1G22330	no change	0.5469550426990075	0.5457015402263033	0.8226684592826925	AT1G22330	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0030154,cell differentiation;	--	NP_564168.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	24	14	10	17
AT5G52100	no change	-0.3440923247370442	0.545967397928671	0.8226684592826925	AT5G52100	--	GO:0008652,cellular amino acid biosynthetic process; GO:0008839,4-hydroxy-tetrahydrodipicolinate reductase; GO:0009085,lysine biosynthetic process; GO:0009089,lysine biosynthetic process via diaminopimelate; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0019684,photosynthesis, light reaction; GO:0019877,diaminopimelate biosynthetic process;	CRR1; chloroplast NAD(P)H dehydrogenase [EC:1.6.99.-]; K16908;	NP_200023.1 Dihydrodipicolinate reductase, bacterial/plant [Arabidopsis thaliana]	44	47	32	31
AT5G17290	no change	-0.6943225183041442	0.5465383931060028	0.8230415446477972	AT5G17290	--	GO:0000045,autophagosome assembly; GO:0000422,autophagy of mitochondrion; GO:0005737,cytoplasm; GO:0006501,C-terminal protein lipidation; GO:0006914,autophagy; GO:0006952,defense response; GO:0006995,cellular response to nitrogen starvation; GO:0010150,leaf senescence; GO:0015031,protein transport; GO:0034045,phagophore assembly site membrane; GO:0034274,Atg12-Atg5-Atg16 complex; GO:0042594,response to starvation; GO:0044804,autophagy of nucleus; GO:0050832,defense response to fungus;	ATG5; autophagy-related protein 5; K08339;	NP_197231.1 autophagy protein Apg5 family [Arabidopsis thaliana]	9	17	6	8
AT1G75240	no change	-0.3834495811960661	0.5469403994794294	0.823159856105942	AT1G75240	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0042803,protein homodimerization activity; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_565106.1 homeobox protein 33 [Arabidopsis thaliana]	61	78	55	55
AT2G23755	no change	0.869268706056566	0.5472894067196878	0.823198309752722	AT2G23755	--	GO:0016020,membrane;	--	NP_850043.2 transmembrane family 220 helix protein [Arabidopsis thaliana]	6	5	9	4
AT5G40660	no change	-0.2076559596043781	0.5497190455012536	0.8258811867115158	AT5G40660	--	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0033615,mitochondrial proton-transporting ATP synthase complex assembly; GO:0043461,proton-transporting ATP synthase complex assembly;	--	NP_198882.1 ATP12 protein-like protein [Arabidopsis thaliana]	117	109	103	87
AT4G23885	no change	0.4630625028678352	0.5497656412163036	0.8258811867115158	AT4G23885	--	GO:0005739,mitochondrion;	--	NP_567689.1 hypothetical protein AT4G23885 [Arabidopsis thaliana]	26	18	20	17
AT4G14000	no change	0.23206239086299707	0.5506114036357295	0.8258811867115158	AT4G14000	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_567417.1 Putative methyltransferase family protein [Arabidopsis thaliana]	87	92	85	69
AT1G55520	no change	-0.4039182270888606	0.5506444371682313	0.8258811867115158	AT1G55520	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006352,DNA-templated transcription initiation; GO:0006366,transcription by RNA polymerase II; GO:0016020,membrane; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0017025,TBP-class protein binding; GO:0140223,general transcription initiation factor activity;	TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein; K03120;	NP_001321103.1 TATA binding protein 2 [Arabidopsis thaliana]	42	39	15	28
AT5G04660	no change	-0.32027961364018864	0.5509279316926585	0.8258811867115158	AT5G04660	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019395,fatty acid oxidation; GO:0020037,heme binding; GO:0046872,metal ion binding;	CYP77A; cytochrome P450 family 77 subfamily A [EC:1.14.-.-]; K21995;	NP_196086.1 cytochrome P450, family 77, subfamily A, polypeptide 4 [Arabidopsis thaliana]	130	137	51	65
AT5G59400	no change	0.4613072480672038	0.5510201395034003	0.8258811867115158	AT5G59400	--	GO:0009535,chloroplast thylakoid membrane; GO:0009773,photosynthetic electron transport in photosystem I; GO:0016020,membrane; GO:0016730,oxidoreductase activity, acting on iron-sulfur proteins as donors;	--	NP_851220.1 PGR5-like A protein [Arabidopsis thaliana]	12	29	24	25
AT4G20850	no change	0.4490847400339746	0.5524853915446772	0.8275899478994724	AT4G20850	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004177,aminopeptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0008240,tripeptidyl-peptidase activity; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0022626,cytosolic ribosome; GO:1901149,salicylic acid binding;	--	NP_193817.2 tripeptidyl peptidase ii [Arabidopsis thaliana]	1238	1090	956	794
AT2G38040	no change	0.40842659974779494	0.5548142535137854	0.8301746843914977	AT2G38040	--	GO:0000166,nucleotide binding; GO:0003989,acetyl-CoA carboxylase activity; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009317,acetyl-CoA carboxylase complex; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016743,carboxyl- or carbamoyltransferase activity; GO:0016874,ligase activity; GO:2001295,malonyl-CoA biosynthetic process;	accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]; K01962;	NP_565880.1 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit [Arabidopsis thaliana]	1898	1488	1102	904
AT4G28650	no change	0.6149082683564764	0.5548633155795433	0.8301746843914977	AT4G28650	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0010067,procambium histogenesis; GO:0010087,phloem or xylem histogenesis; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030154,cell differentiation; GO:0046777,protein autophosphorylation; GO:0090406,pollen tube; GO:0106310,protein serine kinase activity;	--	NP_194594.1 Leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]	12	15	9	10
AT4G16680	no change	0.5168226287976836	0.5559031463477833	0.8311409432884379	AT4G16680	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0016787,hydrolase activity;	DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]; K12813;	NP_193401.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	24	12	17	13
AT1G66830	no change	0.7650909597550886	0.5564601992708149	0.8311409432884379	AT1G66830	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane;	--	NP_176855.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	11	4	8	7
AT4G18596	no change	-0.19832570777035752	0.5564888673333981	0.8311409432884379	AT4G18596	--	GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_567562.2 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	173	246	98	87
AT5G20250	no change	0.22751923198537585	0.5586474483907294	0.8338755168061035	AT5G20250	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006979,response to oxidative stress; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0047274,galactinol-sucrose galactosyltransferase activity; GO:0071456,cellular response to hypoxia;	E2.4.1.82; raffinose synthase [EC:2.4.1.82]; K06617;	NP_001031910.1 Raffinose synthase family protein [Arabidopsis thaliana]	1285	1280	1227	904
AT3G06950	no change	0.4087020581352876	0.5597309909364443	0.8341598753254909	AT3G06950	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0031119,tRNA pseudouridine synthesis; GO:0106029,tRNA pseudouridine synthase activity;	--	NP_187351.2 Pseudouridine synthase family protein [Arabidopsis thaliana]	24	27	22	27
AT4G29250	no change	-0.23698383849878635	0.5597365493124462	0.8341598753254909	AT4G29250	--	GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups;	--	NP_567826.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	123	100	68	42
AT1G70890	no change	0.4176403482922684	0.5598212444227656	0.8341598753254909	AT1G70890	--	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006952,defense response; GO:0009507,chloroplast;	--	NP_177245.1 MLP-like protein 43 [Arabidopsis thaliana]	21	30	21	27
AT1G06450	no change	0.4490491928707723	0.5603367100412416	0.83439981398483265	AT1G06450	--	GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_172133.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	34	21	17	15
AT1G66880	no change	-0.4055325941789985	0.5607381457645367	0.83439981398483265	AT1G66880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding;	--	NP_176860.2 Protein kinase superfamily protein [Arabidopsis thaliana]	44	24	18	29
AT1G43860	no change	-0.2358223495425955	0.5609658474373472	0.83439981398483265	AT1G43860	--	GO:0000976,transcription cis-regulatory region binding; GO:0003676,nucleic acid binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0042254,ribosome biogenesis; GO:0042256,mature ribosome assembly;	SDO1, SBDS; ribosome maturation protein SDO1; K14574;	NP_564488.1 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	115	84	62	65
AT5G40155	no change	-0.6088129702870173	0.5619480850493859	0.8353725913847472	AT5G40155	--	GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus;	--	NP_568576.2 Defensin-like (DEFL) family protein [Arabidopsis thaliana]	12	17	6	11
AT4G01700	no change	-0.6970736021712725	0.5624452677192139	0.8355028559930191	AT4G01700	--	GO:0002239,response to oomycetes; GO:0004568,chitinase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006032,chitin catabolic process; GO:0016998,cell wall macromolecule catabolic process;	--	NP_192079.1 Chitinase family protein [Arabidopsis thaliana]	19	11	10	2
AT1G61680	no change	-0.17599445424045612	0.562692296727715	0.8355028559930191	AT1G61680	--	GO:0000287,magnesium ion binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010333,terpene synthase activity; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0034007,S-linalool synthase activity; GO:0043693,monoterpene biosynthetic process; GO:0046872,metal ion binding;	TPS14; (3S)-linalool synthase [EC:4.2.3.25]; K15086;	NP_001185286.1 terpene synthase 14 [Arabidopsis thaliana]	433	400	337	211
AT4G03190	no change	-0.3417017348969704	0.5631939466792377	0.8357601132936793	AT4G03190	--	GO:0000822,inositol hexakisphosphate binding; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010011,auxin binding; GO:0010152,pollen maturation; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; GO:0043224,nuclear SCF ubiquitin ligase complex; GO:0045014,carbon catabolite repression of transcription by glucose; GO:0051716,cellular response to stimulus;	--	NP_567255.1 GRR1-like protein 1 [Arabidopsis thaliana]	488	448	416	281
AT3G57120	no change	-0.576252776873222	0.5640088639210576	0.8361830475778116	AT3G57120	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_191271.2 Protein kinase superfamily protein [Arabidopsis thaliana]	30	12	7	9
AT5G01540	no change	0.6106023890015297	0.5641360678550501	0.8361830475778116	AT5G01540	--	GO:0000166,nucleotide binding; GO:0002221,pattern recognition receptor signaling pathway; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0042742,defense response to bacterium; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_195774.1 lectin receptor kinase a4.1 [Arabidopsis thaliana]	11	9	12	10
AT2G40020	no change	-0.4683264631782525	0.5648873431381901	0.8365265855280968	AT2G40020	--	GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016570,histone modification; GO:0018024,histone-lysine N-methyltransferase activity; GO:0032259,methylation;	--	NP_973643.1 Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]	24	33	19	16
AT2G46910	no change	-0.3351522555098114	0.565025226138624	0.8365265855280968	AT2G46910	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule;	--	NP_566091.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]	134	152	47	32
AT3G57400	no change	-0.4137247457127309	0.5660478358680203	0.8366819950588624	AT3G57400	--	GO:0016020,membrane;	--	NP_191299.1 transmembrane protein [Arabidopsis thaliana]	28	34	13	20
AT2G30040	no change	-0.48848510102268783	0.5662401867181223	0.8366819950588624	AT2G30040	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0009658,chloroplast organization; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019901,protein kinase binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046777,protein autophosphorylation;	--	NP_180565.1 mitogen-activated protein kinase kinase kinase 14 [Arabidopsis thaliana]	56	24	11	22
AT3G24080	no change	0.4342439722831699	0.5663356961879055	0.8366819950588624	AT3G24080	--	GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005730,nucleolus; GO:0030686,90S preribosome;	--	NP_001326131.1 KRR1 family protein [Arabidopsis thaliana]	124	127	99	80
AT1G48850	no change	-0.3621954537776943	0.5666803653713236	0.8366819950588624	AT1G48850	--	GO:0004107,chorismate synthase activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009423,chorismate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010181,FMN binding; GO:0016829,lyase activity;	aroC; chorismate synthase [EC:4.2.3.5]; K01736;	NP_564534.1 chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [Arabidopsis thaliana]	393	336	217	153
AT5G05160	no change	-0.4162391594509227	0.5667739722913473	0.8366819950588624	AT5G05160	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:2000605,positive regulation of secondary growth;	--	NP_196135.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	40	31	15	13
AT1G20340	no change	0.3756546927010511	0.5673843221615129	0.8370974492180002	AT1G20340	--	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016020,membrane; GO:0017148,negative regulation of translation; GO:0019904,protein domain specific binding; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046028,electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding; GO:0055035,plastid thylakoid membrane; GO:0055070,copper ion homeostasis;	petE; plastocyanin; K02638;	NP_173459.1 Cupredoxin superfamily protein [Arabidopsis thaliana]	13581	11403	4456	4311
AT1G66900	no change	-0.3135970934342618	0.5683044362969512	0.8376224711298926	AT1G66900	--	GO:0008474,palmitoyl-(protein) hydrolase activity; GO:0098734,macromolecule depalmitoylation;	--	NP_176862.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	57	97	35	33
AT1G28110	no change	0.2317689931876892	0.5685397909587343	0.8376224711298926	AT1G28110	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016787,hydrolase activity;	--	NP_564298.1 serine carboxypeptidase-like 45 [Arabidopsis thaliana]	88	82	69	74
AT3G46990	no change	0.450511242274926	0.568727556036328	0.8376224711298926	AT3G46990	--	GO:0005886,plasma membrane; GO:0008150,biological_process;	--	NP_190283.1 DUF740 family protein, putative (DUF740) [Arabidopsis thaliana]	18	35	16	20
AT1G15410	no change	0.5190635677890558	0.5693813885902854	0.8381004245010275	AT1G15410	--	GO:0006807,nitrogen compound metabolic process; GO:0009507,chloroplast; GO:0016855,racemase and epimerase activity, acting on amino acids and derivatives; GO:0036361,racemase activity, acting on amino acids and derivatives; GO:0047661,amino-acid racemase activity;	--	NP_001320372.1 aspartate-glutamate racemase family [Arabidopsis thaliana]	15	16	15	12
AT1G72790	no change	-0.34316401953436326	0.5703384097806334	0.8386676745678575	AT1G72790	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_177422.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	47	39	21	26
AT5G15450	no change	-0.3417693733176179	0.5704535881109364	0.8386676745678575	AT5G15450	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0016887,ATP hydrolysis activity; GO:0034605,cellular response to heat; GO:0042026,protein refolding;	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB; K03695;	NP_568314.1 casein lytic proteinase B3 [Arabidopsis thaliana]	674	582	427	426
AT1G62480	no change	-0.3880233069052786	0.5707553683110135	0.8386676745678575	AT1G62480	--	GO:0005634,nucleus; GO:0005829,cytosol;	--	NP_564795.1 Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]	1399	1270	644	420
AT2G41540	no change	-0.1980234185602141	0.5713388416682785	0.8390405955255447	AT2G41540	--	GO:0004367,glycerol-3-phosphate dehydrogenase [NAD+] activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006072,glycerol-3-phosphate metabolic process; GO:0006116,NADH oxidation; GO:0009331,glycerol-3-phosphate dehydrogenase complex; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046168,glycerol-3-phosphate catabolic process; GO:0047952,glycerol-3-phosphate dehydrogenase [NAD(P)+] activity; GO:0051287,NAD binding;	GPD1; glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8]; K00006;	NP_001031525.1 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	548	530	384	250
AT4G37925	no change	0.4090180396743861	0.5732021306594048	0.8411256686413012	AT4G37925	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010258,NADH dehydrogenase complex (plastoquinone) assembly; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0016655,oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; GO:0048038,quinone binding;	--	NP_001031804.1 subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex [Arabidopsis thaliana]	136	137	92	57
AT1G78140	no change	0.36531756188246867	0.5734196601542859	0.8411256686413012	AT1G78140	--	GO:0005739,mitochondrion; GO:0006744,ubiquinone biosynthetic process; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_565170.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	726	654	473	386
AT5G45040	no change	0.4033039082124521	0.574633660045269	0.8424208898705124	AT5G45040	--	GO:0005506,iron ion binding; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0020037,heme binding; GO:0022900,electron transport chain; GO:0046872,metal ion binding;	petJ; cytochrome c6; K08906;	NP_568640.1 Cytochrome c [Arabidopsis thaliana]	35	29	35	19
AT1G79200	no change	0.4247040468154868	0.5767872219057237	0.8445726977718341	AT1G79200	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0007049,cell cycle; GO:0009734,auxin-activated signaling pathway; GO:0010928,regulation of auxin mediated signaling pathway; GO:0048467,gynoecium development; GO:0048479,style development; GO:0048480,stigma development; GO:0051301,cell division; GO:0051782,negative regulation of cell division; GO:0071365,cellular response to auxin stimulus;	--	NP_565201.1 splicing regulatory glutamine/lysine-rich-like protein [Arabidopsis thaliana]	32	19	22	15
AT3G22120	no change	0.2520335927743389	0.5770291196607049	0.8445726977718341	AT3G22120	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_001327425.1 cell wall-plasma membrane linker protein [Arabidopsis thaliana]	666	418	749	557
AT1G12410	no change	0.40769776999286833	0.5772413321554837	0.8445726977718341	AT1G12410	--	GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0009368,endopeptidase Clp complex; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0009941,chloroplast envelope; GO:0051117,ATPase binding;	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358;	NP_563907.1 CLP protease proteolytic subunit 2 [Arabidopsis thaliana]	256	251	152	138
AT4G28770	no change	-0.22568390547454564	0.5774288778479337	0.8445726977718341	AT4G28770	--	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_001190864.1 Tetraspanin family protein [Arabidopsis thaliana]	106	113	60	60
AT1G09300	no change	-0.31989634410932144	0.5781185609912818	0.8448843813015886	AT1G09300	--	GO:0004177,aminopeptidase activity; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0016787,hydrolase activity; GO:0030145,manganese ion binding; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0070006,metalloaminopeptidase activity;	--	NP_001117254.1 Metallopeptidase M24 family protein [Arabidopsis thaliana]	35	44	50	27
AT4G21980	no change	0.23057760251363568	0.5783059301482779	0.8448843813015886	AT4G21980	--	GO:0000421,autophagosome membrane; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005776,autophagosome; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0006914,autophagy; GO:0006995,cellular response to nitrogen starvation; GO:0015031,protein transport; GO:0016020,membrane; GO:0019776,Atg8 ligase activity; GO:0019779,Atg8 activating enzyme activity; GO:0019786,Atg8-specific peptidase activity; GO:0031410,cytoplasmic vesicle; GO:0050832,defense response to fungus; GO:0061908,phagophore;	GABARAP, ATG8, LC3; GABA(A) receptor-associated protein; K08341;	NP_567642.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]	244	315	248	159
AT3G49100	no change	-0.32320186142079965	0.5787120598733613	0.8449926519665545	AT3G49100	--	GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0045900,negative regulation of translational elongation; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex;	SRP9; signal recognition particle subunit SRP9; K03109;	NP_001327913.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]	32	62	54	29
AT5G22050	no change	0.23337450073336807	0.5801849705963404	0.8458652105173363	AT5G22050	--	GO:0004672,protein kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_680192.2 Protein kinase superfamily protein [Arabidopsis thaliana]	79	75	74	51
AT1G31770	no change	0.4098770012610764	0.5802383583782119	0.8458652105173363	AT1G31770	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009736,cytokinin-activated signaling pathway; GO:0010184,cytokinin transport; GO:0010222,stem vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0015562,efflux transmembrane transporter activity; GO:0016020,membrane; GO:0042542,response to hydrogen peroxide; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042742,defense response to bacterium; GO:0055085,transmembrane transport; GO:0140115,export across plasma membrane; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_564383.1 ATP-binding cassette 14 [Arabidopsis thaliana]	182	229	139	131
AT3G47550	no change	0.412084355328421	0.580306741675155	0.8458652105173363	AT3G47550	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016567,protein ubiquitination;	--	NP_190339.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	189	206	114	120
AT2G18280	no change	-0.4972166538373468	0.5807263480388807	0.8459923043840591	AT2G18280	--	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006355,regulation of DNA-templated transcription; GO:0009536,plastid; GO:0009620,response to fungus;	TULP1; tubby-related protein 1; K19600;	NP_001031369.1 tubby like protein 2 [Arabidopsis thaliana]	29	14	16	8
AT1G10090	no change	0.4705359444201669	0.5824095772852128	0.8479590241366514	AT1G10090	--	GO:0005227,calcium activated cation channel activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0098655,cation transmembrane transport;	--	NP_172480.2 Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]	72	90	38	53
AT5G63530	no change	-0.3504706294747191	0.5834572251588588	0.8482130844479516	AT5G63530	--	GO:0046872,metal ion binding; GO:0046914,transition metal ion binding; GO:0046916,cellular transition metal ion homeostasis;	--	NP_568974.1 farnesylated protein 3 [Arabidopsis thaliana]	189	231	134	131
AT5G43430	no change	0.19590719555910852	0.5838809030491292	0.8482130844479516	AT5G43430	--	GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006552,leucine catabolic process; GO:0009055,electron transfer activity; GO:0009536,plastid; GO:0015996,chlorophyll catabolic process; GO:0022900,electron transport chain;	fixA, etfB; electron transfer flavoprotein beta subunit; K03521;	NP_001332757.1 electron transfer flavoprotein beta [Arabidopsis thaliana]	418	429	355	265
AT2G25460	no change	0.6826784089908724	0.5841385581542234	0.8482130844479516	AT2G25460	--	--	--	NP_001325254.1 EEIG1/EHBP1 protein amino-terminal domain protein [Arabidopsis thaliana]	14	6	3	15
AT3G09300	no change	0.25501287324934907	0.5844680597081866	0.8482130844479516	AT3G09300	--	GO:0005829,cytosol; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0015248,sterol transporter activity; GO:0015918,sterol transport; GO:0016020,membrane; GO:0032934,sterol binding; GO:0043231,intracellular membrane-bounded organelle;	--	NP_187541.1 OSBP(oxysterol binding protein)-related protein 3B [Arabidopsis thaliana]	318	257	224	164
AT3G52860	no change	0.5367772183470176	0.5848450336727925	0.8482130844479516	AT3G52860	--	GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016592,mediator complex; GO:1900055,regulation of leaf senescence;	--	NP_190854.1 mediator of RNA polymerase II transcription subunit-like protein [Arabidopsis thaliana]	15	13	22	6
AT2G42510	no change	-0.5622127541418003	0.5849106439941679	0.8482130844479516	AT2G42510	--	GO:0000387,spliceosomal snRNP assembly; GO:0005634,nucleus; GO:0032797,SMN complex;	--	NP_001325022.1 survival motor neuron interacting protein [Arabidopsis thaliana]	26	7	7	15
AT3G48080	no change	0.6837863092953143	0.5852438469620947	0.8482130844479516	AT3G48080	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0009626,plant-type hypersensitive response; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0016787,hydrolase activity; GO:0106093,EDS1 disease-resistance complex;	EDS1; enhanced disease susceptibility 1 protein; K18875;	NP_190391.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	36	6	8	2
AT2G41110	no change	-0.22336989684324848	0.5853822842493306	0.8482130844479516	AT2G41110	--	GO:0000325,plant-type vacuole; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0009846,pollen germination; GO:0019722,calcium-mediated signaling; GO:0030163,protein catabolic process; GO:0046872,metal ion binding;	CALM; calmodulin; K02183;	NP_180271.1 calmodulin 5 [Arabidopsis thaliana]	262	222	172	128
AT1G25400	no change	-0.6758504878478764	0.5855836500491359	0.8482130844479516	AT1G25400	--	GO:0016020,membrane;	--	NP_001185095.1 transmembrane protein [Arabidopsis thaliana]	7	10	7	8
AT2G02080	no change	0.3815898156821138	0.5869837339738465	0.8497574533352897	AT2G02080	C2H2	GO:0002221,pattern recognition receptor signaling pathway; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008356,asymmetric cell division; GO:0009507,chloroplast; GO:0009536,plastid; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048364,root development;	--	NP_001325405.1 indeterminate(ID)-domain 4 [Arabidopsis thaliana]	30	27	18	33
AT5G40970	no change	-0.583432509209187	0.5878296168346767	0.8504982233338557	AT5G40970	--	--	--	NP_001318719.1 hypothetical protein (DUF 3339) [Arabidopsis thaliana]	14	12	14	5
AT5G65490	no change	0.2450435311283936	0.5888007278935887	0.8514192343688541	AT5G65490	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_201352.1 suppressor-like protein [Arabidopsis thaliana]	83	81	65	47
AT2G34930	no change	0.2748191167351193	0.5904199644347609	0.8527447573649127	AT2G34930	--	GO:0002239,response to oomycetes; GO:0005515,protein binding; GO:0050832,defense response to fungus;	--	VYS54481.1 unnamed protein product [Arabidopsis thaliana]	69	61	34	41
AT5G35370	no change	0.7593679407811003	0.5908081919004137	0.8527447573649127	AT5G35370	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0031625,ubiquitin protein ligase binding; GO:0106310,protein serine kinase activity;	--	NP_198387.2 S-locus lectin protein kinase family protein [Arabidopsis thaliana]	8	5	3	10
AT1G68590	no change	0.22550666374229067	0.591609790439461	0.8527447573649127	AT1G68590	--	GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0032544,plastid translation; GO:1990904,ribonucleoprotein complex;	--	NP_564934.1 Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]	272	289	215	131
AT3G54826	no change	-0.3080390074534387	0.5916629412177044	0.8527447573649127	AT3G54826	--	GO:0005739,mitochondrion; GO:0006457,protein folding; GO:0008270,zinc ion binding; GO:0030150,protein import into mitochondrial matrix; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0051087,chaperone binding;	--	NP_974434.2 Zim17-type zinc finger protein [Arabidopsis thaliana]	78	60	45	28
AT5G22010	no change	-0.29888854327873027	0.5922006352534146	0.8527447573649127	AT5G22010	--	GO:0000003,reproduction; GO:0000166,nucleotide binding; GO:0000712,resolution of meiotic recombination intermediates; GO:0003677,DNA binding; GO:0003689,DNA clamp loader activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005663,DNA replication factor C complex; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0016887,ATP hydrolysis activity; GO:0051321,meiotic cell cycle; GO:0051570,regulation of histone H3-K9 methylation;	RFC1; replication factor C subunit 1; K10754;	NP_680188.1 replication factor C1 [Arabidopsis thaliana]	146	157	142	79
AT5G45030	no change	0.27354801542426443	0.5924922588808387	0.8527447573649127	AT5G45030	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001032013.1 Trypsin family protein [Arabidopsis thaliana]	51	50	43	48
AT3G12060	no change	-0.29281693828532074	0.5927882441897414	0.8527447573649127	AT3G12060	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; GO:0030244,cellulose biosynthetic process;	--	ABK28553.1 unknown, partial [Arabidopsis thaliana]	61	70	66	41
AT5G54280	no change	0.2609051935467672	0.5928277322667487	0.8527447573649127	AT5G54280	--	GO:0000146,microfilament motor activity; GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003779,actin binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0006897,endocytosis; GO:0007015,actin filament organization; GO:0009506,plasmodesma; GO:0015629,actin cytoskeleton; GO:0016459,myosin complex; GO:0030048,actin filament-based movement; GO:0030050,vesicle transport along actin filament; GO:0031982,vesicle; GO:0051015,actin filament binding; GO:0070161,anchoring junction;	MYO5; myosin V; K10357;	NP_568806.3 myosin 2 [Arabidopsis thaliana]	88	51	46	42
AT3G26440	no change	0.6912587167883792	0.5934135555664201	0.8527447573649127	AT3G26440	--	GO:0005794,Golgi apparatus; GO:0016020,membrane;	--	NP_001189981.1 transmembrane protein, putative (DUF707) [Arabidopsis thaliana]	11	3	10	7
AT1G15390	no change	0.26930355962560437	0.5934603748934844	0.8527447573649127	AT1G15390	--	GO:0005739,mitochondrion; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0018206,peptidyl-methionine modification; GO:0031365,N-terminal protein amino acid modification; GO:0042586,peptide deformylase activity; GO:0043686,co-translational protein modification; GO:0046872,metal ion binding;	PDF, def; peptide deformylase [EC:3.5.1.88]; K01462;	NP_563974.1 peptide deformylase 1A [Arabidopsis thaliana]	53	40	50	47
AT3G57910	no change	0.4693899434676325	0.5939584231841115	0.8527447573649127	AT3G57910	--	GO:0000776,kinetochore; GO:0003676,nucleic acid binding; GO:0008150,biological_process;	--	NP_191350.1 D111/G-patch domain-containing protein [Arabidopsis thaliana]	36	18	9	12
AT2G25900	no change	0.253597395217283	0.5947157169865073	0.8527447573649127	AT2G25900	C3H	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0061157,mRNA destabilization;	--	NP_001189604.1 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]	238	245	130	161
AT2G39730	no change	0.15050414478942375	0.5950682823721738	0.8527447573649127	AT2G39730	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005794,Golgi apparatus; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009753,response to jasmonic acid; GO:0009941,chloroplast envelope; GO:0010150,leaf senescence; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0016887,ATP hydrolysis activity; GO:0030234,enzyme regulator activity; GO:0043531,ADP binding; GO:0046863,ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity;	--	NP_565913.1 rubisco activase [Arabidopsis thaliana]	7115	6770	4450	3524
AT3G05230	no change	-0.29458019039047745	0.5951160842856807	0.8527447573649127	AT3G05230	--	GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER;	SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948;	NP_566250.1 Signal peptidase subunit [Arabidopsis thaliana]	65	58	36	34
AT1G18470	no change	-0.17547495409641556	0.5953075634306946	0.8527447573649127	AT1G18470	--	GO:0005783,endoplasmic reticulum; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane;	--	NP_564052.1 Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana]	124	132	120	96
AT5G27120	no change	0.3883676758442327	0.5954770949399397	0.8527447573649127	AT5G27120	--	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	NOP58; nucleolar protein 58; K14565;	NP_198064.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]	333	355	528	394
AT5G62520	no change	-0.7247864428275328	0.595512183945851	0.8527447573649127	AT5G62520	--	GO:0003950,NAD+ ADP-ribosyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0009651,response to salt stress; GO:0016363,nuclear matrix; GO:0071456,cellular response to hypoxia; GO:0072593,reactive oxygen species metabolic process;	--	NP_201058.1 similar to RCD one 5 [Arabidopsis thaliana]	15	6	4	5
AT3G53120	no change	-0.2858358210779324	0.5958194825697232	0.8527447573649127	AT3G53120	--	GO:0000813,ESCRT I complex; GO:0005515,protein binding; GO:0005768,endosome; GO:0006612,protein targeting to membrane; GO:0006623,protein targeting to vacuole; GO:0006886,intracellular protein transport; GO:0007034,vacuolar transport; GO:0015031,protein transport; GO:0043162,ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; GO:0072666,establishment of protein localization to vacuole;	VPS37; ESCRT-I complex subunit VPS37; K12185;	NP_190880.1 Modifier of rudimentary (Mod(r)) protein [Arabidopsis thaliana]	44	43	58	30
AT1G49650	no change	0.4053496737433946	0.5960836633996777	0.8527447573649127	AT1G49650	--	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity;	--	NP_564550.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	87	54	37	36
AT4G17280	no change	-0.25449090472683	0.597504140044158	0.8542966496698775	AT4G17280	--	GO:0016020,membrane; GO:0046872,metal ion binding;	--	NP_193461.5 Auxin-responsive family protein [Arabidopsis thaliana]	69	69	45	35
AT1G56580	no change	-0.16338052759751065	0.5989474382980121	0.8558794107065923	AT1G56580	--	GO:0009737,response to abscisic acid; GO:0010090,trichome morphogenesis;	--	NP_564720.1 plant/protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]	1893	1720	1179	856
AT1G51670	no change	-0.7703046640978872	0.5998186664978327	0.8566433817267027	AT1G51670	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009408,response to heat; GO:0009409,response to cold; GO:0010286,heat acclimation;	--	NP_001322196.1 hypothetical protein AT1G51670 [Arabidopsis thaliana]	7	10	10	1
AT5G01640	no change	-0.7094646667620808	0.6026721919871489	0.8602359666894526	AT5G01640	--	GO:0005515,protein binding; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	--	NP_195784.1 prenylated RAB acceptor 1.B5 [Arabidopsis thaliana]	11	8	6	3
AT4G24380	no change	0.29879095249735776	0.603536051984084	0.8607533162660724	AT4G24380	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016787,hydrolase activity;	--	NP_567701.1 dihydrofolate reductase [Arabidopsis thaliana]	446	398	200	125
AT5G41110	no change	0.48856472475353385	0.6037891353779952	0.8607533162660724	AT5G41110	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001332177.1 meiosis chromosome segregation family protein [Arabidopsis thaliana]	31	23	17	13
AT4G10800	no change	-0.6850268084121005	0.6042448851104975	0.8607533162660724	AT4G10800	--	GO:0016567,protein ubiquitination;	--	NP_001328822.1 BTB/POZ domain protein [Arabidopsis thaliana]	9	9	6	5
AT3G60290	no change	-0.5466326046597914	0.6049252447951796	0.8607533162660724	AT3G60290	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_191588.2 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	15	21	6	7
AT4G01000	no change	-0.1686912890725858	0.6049380745890389	0.8607533162660724	AT4G01000	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0007049,cell cycle;	--	NP_001319838.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]	279	228	200	140
AT1G76460	no change	0.5754157556733226	0.6050639225147362	0.8607533162660724	AT1G76460	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0008150,biological_process; GO:0030154,cell differentiation;	--	NP_565132.2 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	15	8	19	4
AT1G68520	no change	-0.23572582583121449	0.6054805728952021	0.8608104357485344	AT1G68520	CO-like	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_564932.1 B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]	86	88	89	55
AT1G59850	no change	0.748322353858061	0.6061209347065842	0.8608104357485344	AT1G59850	--	GO:0005874,microtubule; GO:0008017,microtubule binding; GO:0008150,biological_process;	--	NP_176194.1 ARM repeat superfamily protein [Arabidopsis thaliana]	8	5	4	7
AT5G58070	no change	0.09675825288595384	0.6061928816713121	0.8608104357485344	AT5G58070	--	GO:0000302,response to reactive oxygen species; GO:0000325,plant-type vacuole; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006883,cellular sodium ion homeostasis; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009416,response to light stimulus; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009644,response to high light intensity; GO:0009898,cytoplasmic side of plasma membrane; GO:0009941,chloroplast envelope; GO:0010286,heat acclimation; GO:0010431,seed maturation; GO:0016020,membrane; GO:0030644,cellular chloride ion homeostasis; GO:0031969,chloroplast membrane; GO:0042538,hyperosmotic salinity response; GO:0045735,nutrient reservoir activity; GO:0050826,response to freezing; GO:0071456,cellular response to hypoxia; GO:1901002,positive regulation of response to salt stress; GO:1901562,response to paraquat; GO:1902884,positive regulation of response to oxidative stress;	--	NP_200615.1 temperature-induced lipocalin [Arabidopsis thaliana]	927	753	827	615
AT5G10170	no change	-0.28797736620986747	0.6064570181914036	0.8608104357485344	AT5G10170	--	GO:0004512,inositol-3-phosphate synthase activity; GO:0005737,cytoplasm; GO:0006021,inositol biosynthetic process; GO:0006629,lipid metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0009793,embryo development ending in seed dormancy; GO:0016853,isomerase activity;	INO1, ISYNA1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]; K01858;	NP_196579.1 myo-inositol-1-phosphate synthase 3 [Arabidopsis thaliana]	125	106	78	58
AT1G14020	no change	0.2623764794310022	0.607065188062424	0.8611933687953562	AT1G14020	--	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0071555,cell wall organization;	--	NP_172855.2 O-fucosyltransferase family protein [Arabidopsis thaliana]	47	64	48	41
AT1G64720	no change	0.2793527184768365	0.6082058103100502	0.8623308006902939	AT1G64720	--	GO:0005773,vacuole; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_176653.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	123	115	78	62
AT1G70370	no change	0.262879323058959	0.6085697986364257	0.8623664462860263	AT1G70370	--	GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009827,plant-type cell wall modification; GO:0042547,cell wall modification involved in multidimensional cell growth; GO:0048046,apoplast;	--	NP_001185361.1 polygalacturonase 2 [Arabidopsis thaliana]	1208	1100	927	744
AT1G80930	no change	-0.31320952568449023	0.6099326299573284	0.863816662905621	AT1G80930	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0006417,regulation of translation; GO:0071013,catalytic step 2 spliceosome;	--	NP_178208.1 MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana]	324	337	329	211
AT4G11660	no change	0.5393430095066023	0.6119076362949186	0.8653772547305767	AT4G11660	HSF	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0071456,cellular response to hypoxia;	--	KAG7615619.1 Heat shock factor (HSF)-type DNA-binding [Arabidopsis thaliana x Arabidopsis arenosa]	13	13	6	15
AT2G29650	no change	0.26548651906910514	0.6124921394744361	0.8653772547305767	AT2G29650	--	GO:0005315,inorganic phosphate transmembrane transporter activity; GO:0006811,ion transport; GO:0006814,sodium ion transport; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009624,response to nematode; GO:0015293,symporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_180526.1 phosphate transporter 4;1 [Arabidopsis thaliana]	148	138	73	93
AT3G05350	no change	-0.24246480760916	0.6125285192613869	0.8653772547305767	AT3G05350	--	GO:0004177,aminopeptidase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0070006,metalloaminopeptidase activity; GO:0110165,cellular anatomical entity;	--	NP_187186.5 Metallopeptidase M24 family protein [Arabidopsis thaliana]	109	87	72	55
AT5G27950	no change	0.39404458868818	0.6129192423991143	0.8653772547305767	AT5G27950	--	GO:0000166,nucleotide binding; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0008574,plus-end-directed microtubule motor activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0030705,cytoskeleton-dependent intracellular transport;	--	NP_001332499.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	32	25	15	14
AT1G18880	no change	0.3305536677542458	0.6129455636667946	0.8653772547305767	AT1G18880	--	GO:0005886,plasma membrane; GO:0010233,phloem transport; GO:0015112,nitrate transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090408,phloem nitrate loading;	--	NP_173322.1 Major facilitator superfamily protein [Arabidopsis thaliana]	43	42	30	47
AT1G51600	no change	0.3668874123374257	0.6130747309545107	0.8653772547305767	AT1G51600	GATA	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0042802,identical protein binding; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding;	--	NP_564593.1 ZIM-LIKE 2 [Arabidopsis thaliana]	22	22	29	18
AT2G15580	no change	0.3692363526873184	0.6142944035023817	0.8661446840212786	AT2G15580	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0061630,ubiquitin protein ligase activity;	--	NP_565376.1 RING/U-box superfamily protein [Arabidopsis thaliana]	113	121	126	88
AT1G70760	no change	0.31669253050816426	0.6143491925765827	0.8661446840212786	AT1G70760	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010258,NADH dehydrogenase complex (plastoquinone) assembly; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0016655,oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; GO:0042651,thylakoid membrane; GO:0048038,quinone binding;	--	NP_177233.1 inorganic carbon transport protein-like protein [Arabidopsis thaliana]	51	27	25	45
AT4G32340	no change	0.2818317233776302	0.6146394103506598	0.8661446840212786	AT4G32340	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_194960.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	126	130	113	93
AT4G02230	no change	0.30440385115102053	0.6152399757521558	0.8661973765321924	AT4G02230	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-L19e, RPL19; large subunit ribosomal protein L19e; K02885;	NP_192132.1 Ribosomal protein L19e family protein [Arabidopsis thaliana]	371	438	356	251
AT3G18800	no change	0.4363402518639514	0.6153575075717893	0.8661973765321924	AT3G18800	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_566619.1 transmembrane protein [Arabidopsis thaliana]	18	33	18	8
AT5G64330	no change	-0.24915822541383648	0.6164783922941575	0.8664828902752618	AT5G64330	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009638,phototropism; GO:0009785,blue light signaling pathway; GO:0016020,membrane; GO:0016567,protein ubiquitination;	--	NP_568989.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	231	221	166	101
AT2G30950	no change	0.3777001452647042	0.6170137467562212	0.8664828902752618	AT2G30950	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0010205,photoinhibition; GO:0010206,photosystem II repair; GO:0010304,PSII associated light-harvesting complex II catabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0030163,protein catabolic process; GO:0031977,thylakoid lumen; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0048564,photosystem I assembly; GO:0072593,reactive oxygen species metabolic process;	--	NP_001323510.1 FtsH extracellular protease family [Arabidopsis thaliana]	1247	1341	858	753
AT2G36950	no change	-0.28571052734364777	0.6171856284903605	0.8664828902752618	AT2G36950	--	GO:0005507,copper ion binding; GO:0046872,metal ion binding;	--	NP_565855.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]	96	130	91	55
AT2G04880	no change	-0.22667457924198595	0.617312934246851	0.8664828902752618	AT2G04880	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009751,response to salicylic acid; GO:0009863,salicylic acid mediated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding;	WRKY1; WRKY transcription factor 1; K18834;	NP_849936.1 zinc-dependent activator protein-1 [Arabidopsis thaliana]	179	145	113	80
AT2G26500	no change	-0.3306945469691165	0.6174214139395316	0.8664828902752618	AT2G26500	--	GO:0005777,peroxisome; GO:0009512,cytochrome b6f complex; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0019904,protein domain specific binding;	--	NP_565623.1 cytochrome b6f complex subunit (petM) [Arabidopsis thaliana]	412	382	201	185
AT3G20800	no change	0.2140089395605944	0.6176031288641749	0.8664828902752618	AT3G20800	--	GO:0000932,P-body; GO:0005515,protein binding; GO:0017148,negative regulation of translation; GO:0030015,CCR4-NOT core complex;	RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9; K12606;	NP_188716.1 Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]	190	170	130	92
AT1G28100	no change	0.5224323493029832	0.6181576556127938	0.8667830487793721	AT1G28100	--	GO:0016123,xanthophyll biosynthetic process;	--	NP_001320339.1 hypothetical protein AT1G28100 [Arabidopsis thaliana]	17	10	7	14
AT4G08940	no change	0.5320295717711545	0.6209614378688086	0.8693776660408391	AT4G08940	--	GO:0003723,RNA binding; GO:0006979,response to oxidative stress; GO:0016787,hydrolase activity;	--	NP_192633.2 Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]	11	14	21	4
AT3G54120	no change	-0.7139895015604587	0.621286909231225	0.8693776660408391	AT3G54120	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009617,response to bacterium; GO:0016020,membrane;	--	NP_190980.1 Reticulon family protein [Arabidopsis thaliana]	8	9	9	1
AT2G41750	no change	-0.7405892717244704	0.6215841846494797	0.8693776660408391	AT2G41750	--	GO:0008033,tRNA processing; GO:0016432,tRNA-uridine aminocarboxypropyltransferase activity; GO:0016740,transferase activity;	yfiP; DTW domain-containing protein; K05812;	NP_181706.2 DTW domain-containing protein [Arabidopsis thaliana]	12	7	5	1
AT2G21185	no change	-0.4593010665178916	0.621768474285223	0.8693776660408391	AT2G21185	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_565500.1 transmembrane protein [Arabidopsis thaliana]	15	14	17	10
AT4G21660	no change	-0.3027897005393605	0.6224955802838664	0.8693776660408391	AT4G21660	--	GO:0000398,mRNA splicing, via spliceosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005684,U2-type spliceosomal complex; GO:0005686,U2 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0016020,membrane; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome;	SF3B2, SAP145, CUS1; splicing factor 3B subunit 2; K12829;	NP_193897.2 proline-rich spliceosome-associated (PSP) family protein [Arabidopsis thaliana]	309	214	230	151
AT4G01280	no change	0.44828333570448464	0.6229538130022054	0.8693776660408391	AT4G01280	MYB_related	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription;	--	NP_192037.2 Homeodomain-like superfamily protein [Arabidopsis thaliana]	16	18	21	8
AT3G13900	no change	-0.5167520793444886	0.622971413810649	0.8693776660408391	AT3G13900	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009860,pollen tube growth; GO:0012505,endomembrane system; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity; GO:1905038,regulation of membrane lipid metabolic process;	E7.6.2.1; phospholipid-translocating ATPase [EC:7.6.2.1]; K01530;	NP_188006.4 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]	16	14	7	8
AT3G47470	no change	-0.3296934397442861	0.623046078258645	0.8693776660408391	AT3G47470	--	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4; K08910;	NP_190331.3 light-harvesting chlorophyll-protein complex I subunit A4 [Arabidopsis thaliana]	6551	6196	2122	1931
AT4G01870	no change	-0.27179384250342054	0.6232169145173189	0.8693776660408391	AT4G01870	--	GO:0005829,cytosol; GO:0006508,proteolysis;	--	NP_001329613.1 tolB protein-like protein [Arabidopsis thaliana]	155	145	49	72
AT1G19690	no change	0.4991223963574605	0.6234240630744721	0.8693776660408391	AT1G19690	--	GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_564095.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	16	12	14	7
AT3G07320	no change	-0.26534076902158077	0.6246049879544173	0.8705474777349355	AT3G07320	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_683538.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	647	544	410	307
AT1G08940	no change	-0.4472471098049322	0.625233202046711	0.870946086047553	AT1G08940	--	GO:0003824,catalytic activity; GO:0016791,phosphatase activity;	--	NP_172369.1 Phosphoglycerate mutase family protein [Arabidopsis thaliana]	20	20	16	13
AT3G17920	no change	-0.43884288774222746	0.6261072512919514	0.871086582588649	AT3G17920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0019901,protein kinase binding;	--	NP_188419.2 Outer arm dynein light chain 1 protein [Arabidopsis thaliana]	19	24	13	8
AT2G45340	no change	-0.2272547542465082	0.6266652048246724	0.871086582588649	AT2G45340	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_182059.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	213	159	114	91
AT3G21055	no change	-0.23242507050703765	0.6268733734105049	0.871086582588649	AT3G21055	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane;	--	NP_001319602.1 photosystem II subunit T [Arabidopsis thaliana]	899	984	459	390
AT4G00750	no change	-0.18470655045802076	0.6272974245534285	0.871086582588649	AT4G00750	--	GO:0000139,Golgi membrane; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_191984.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	133	158	67	56
AT2G46610	no change	-0.4876148359166024	0.6276000589176101	0.871086582588649	AT2G46610	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck;	SFRS4_5_6; splicing factor, arginine/serine-rich 4/5/6; K12893;	NP_182184.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	20	13	11	7
AT5G27450	no change	-0.26792510596129304	0.6277243033629935	0.871086582588649	AT5G27450	--	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0004496,mevalonate kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0008299,isoprenoid biosynthetic process; GO:0016126,sterol biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019287,isopentenyl diphosphate biosynthetic process, mevalonate pathway; GO:0046872,metal ion binding;	E2.7.1.36, MVK, mvaK1; mevalonate kinase [EC:2.7.1.36]; K00869;	NP_001190411.1 mevalonate kinase [Arabidopsis thaliana]	236	176	128	110
AT1G53480	no change	-0.5120703520397427	0.6280693979194264	0.871086582588649	AT1G53480	--	GO:0008150,biological_process;	--	NP_001185210.1 mto 1 responding down 1 [Arabidopsis thaliana]	22	25	6	2
AT4G38250	no change	0.22440117505818513	0.6280722511002637	0.871086582588649	AT4G38250	--	GO:0003333,amino acid transmembrane transport; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006865,amino acid transport; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport;	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209;	NP_195538.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	443	312	309	211
AT2G46505	no change	0.3656304901404397	0.628982571586904	0.8718739894818468	AT2G46505	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005749,mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone); GO:0006099,tricarboxylic acid cycle; GO:0006121,mitochondrial electron transport, succinate to ubiquinone; GO:0008177,succinate dehydrogenase (ubiquinone) activity; GO:0016020,membrane; GO:0045273,respiratory chain complex II; GO:0046872,metal ion binding;	--	NP_566077.1 succinate dehydrogenase subunit 4 [Arabidopsis thaliana]	78	91	73	52
AT3G22210	no change	0.15222394206595435	0.6295146126195791	0.8721364665850999	AT3G22210	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_566701.1 transmembrane protein [Arabidopsis thaliana]	173	153	114	87
AT1G52510	no change	-0.1584006612856692	0.6309367066748591	0.8734382206213939	AT1G52510	--	GO:0003674,molecular_function; GO:0003824,catalytic activity; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope;	--	NP_175660.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	241	260	225	191
AT5G14950	no change	0.3471970022721109	0.6311406238596241	0.8734382206213939	AT5G14950	--	GO:0000137,Golgi cis cisterna; GO:0000139,Golgi membrane; GO:0003824,catalytic activity; GO:0004559,alpha-mannosidase activity; GO:0004572,mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006013,mannose metabolic process; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0006491,N-glycan processing; GO:0006517,protein deglycosylation; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0042538,hyperosmotic salinity response; GO:0046872,metal ion binding;	MAN2; alpha-mannosidase II [EC:3.2.1.114]; K01231;	NP_196999.1 golgi alpha-mannosidase II [Arabidopsis thaliana]	383	345	323	241
AT2G45630	no change	0.4888696789078484	0.6323534601048365	0.8745418426964939	AT2G45630	--	GO:0005829,cytosol; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0051287,NAD binding;	--	NP_566049.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	24	12	10	7
AT3G16400	no change	-0.4273977294975708	0.6326253565439077	0.8745418426964939	AT3G16400	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0030246,carbohydrate binding; GO:0050790,regulation of catalytic activity; GO:0080027,response to herbivore; GO:0080028,nitrile biosynthetic process;	--	NP_001030709.1 nitrile specifier protein 1 [Arabidopsis thaliana]	29	33	6	11
AT1G22620	no change	-0.14577312188168	0.6332969207274223	0.8749949311896252	AT1G22620	--	GO:0004438,phosphatidylinositol-3-phosphatase activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0007010,cytoskeleton organization; GO:0009826,unidimensional cell growth; GO:0009832,plant-type cell wall biogenesis; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0036092,phosphatidylinositol-3-phosphate biosynthetic process; GO:0043231,intracellular membrane-bounded organelle; GO:0043813,phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity; GO:0046856,phosphatidylinositol dephosphorylation;	FIG4; phosphatidylinositol 3,5-bisphosphate 5-phosphatase [EC:3.1.3.-]; K22913;	NP_173676.2 Phosphoinositide phosphatase family protein [Arabidopsis thaliana]	177	155	139	93
AT4G14550	no change	0.4434895908299587	0.6351222631268159	0.8770407811490756	AT4G14550	--	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010102,lateral root morphogenesis; GO:0016020,membrane; GO:0045892,negative regulation of DNA-templated transcription;	IAA; auxin-responsive protein IAA; K14484;	NP_193191.2 indole-3-acetic acid inducible 14 [Arabidopsis thaliana]	17	17	16	8
AT1G50700	no change	0.3402677404042631	0.6363758473247367	0.8778543389307669	AT1G50700	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_175485.1 calcium-dependent protein kinase 33 [Arabidopsis thaliana]	37	35	13	31
AT5G47860	no change	-0.2127871312697458	0.6366623675871408	0.8778543389307669	AT5G47860	--	GO:0003674,molecular_function; GO:0009507,chloroplast;	--	NP_199597.1 Gut esterase (DUF1350) [Arabidopsis thaliana]	169	150	101	90
AT3G12250	no change	-0.5021290266043046	0.6367462120495857	0.8778543389307669	AT3G12250	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009410,response to xenobiotic stimulus; GO:0009627,systemic acquired resistance; GO:0016787,hydrolase activity; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding;	TGA; transcription factor TGA; K14431;	NP_001326019.1 TGACG motif-binding factor 6 [Arabidopsis thaliana]	11	17	10	6
AT5G09240	no change	0.3797617438348375	0.6380793363251078	0.8787462200533379	AT5G09240	--	GO:0003677,DNA binding; GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0006355,regulation of DNA-templated transcription; GO:0060261,positive regulation of transcription initiation by RNA polymerase II;	--	NP_850798.2 ssDNA-binding transcriptional regulator [Arabidopsis thaliana]	32	35	29	26
AT3G05870	no change	0.5414977554864038	0.6380836992764513	0.8787462200533379	AT3G05870	--	GO:0005680,anaphase-promoting complex; GO:0008270,zinc ion binding; GO:0016567,protein ubiquitination; GO:0031145,anaphase-promoting complex-dependent catabolic process; GO:0046872,metal ion binding; GO:0051301,cell division; GO:0061630,ubiquitin protein ligase activity; GO:0097602,cullin family protein binding;	APC11; anaphase-promoting complex subunit 11; K03358;	NP_001325493.1 anaphase-promoting complex/cyclosome 11 [Arabidopsis thaliana]	9	9	8	10
AT2G18570	no change	-0.336270504082929	0.6393520610569501	0.8797058958988503	AT2G18570	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_849978.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	33	44	26	12
AT5G15440	no change	-0.38273739545679675	0.6398070430052287	0.8797058958988503	AT5G15440	--	GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_197048.1 EID1-like 1 [Arabidopsis thaliana]	19	29	20	11
AT5G28060	no change	-0.22964134118465385	0.6398175297873366	0.8797058958988503	AT5G28060	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex;	RP-S24e, RPS24; small subunit ribosomal protein S24e; K02974;	NP_198158.1 Ribosomal protein S24e family protein [Arabidopsis thaliana]	675	565	713	559
AT5G04250	no change	-0.29710852049368697	0.6401981215858449	0.879753898183572	AT5G04250	--	GO:0004843,cysteine-type deubiquitinase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity;	--	NP_001119168.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]	47	37	22	20
AT4G39090	no change	0.273462571992134	0.6413138769517704	0.8806756095447693	AT4G39090	--	GO:0000323,lytic vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005764,lysosome; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0006970,response to osmotic stress; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009651,response to salt stress; GO:0016787,hydrolase activity; GO:0042742,defense response to bacterium; GO:0051603,proteolysis involved in protein catabolic process;	CTSF; cathepsin F [EC:3.4.22.41]; K01373;	NP_568052.1 Papain family cysteine protease [Arabidopsis thaliana]	3398	2988	2245	1696
AT3G18780	no change	-0.24817454373525827	0.641560935204716	0.8806756095447693	AT3G18780	--	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0007010,cytoskeleton organization; GO:0009644,response to high light intensity; GO:0009735,response to cytokinin; GO:0010053,root epidermal cell differentiation; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0016787,hydrolase activity; GO:0048767,root hair elongation; GO:0048768,root hair cell tip growth;	--	NP_001289901.1 uncharacterized protein LOC104746256 [Camelina sativa]	1879	1632	952	767
AT3G24715	no change	-0.4938094872467147	0.6422812167699787	0.8808218591373586	AT3G24715	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006833,water transport; GO:0007165,signal transduction; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0071456,cellular response to hypoxia;	--	NP_001319636.1 kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein [Arabidopsis thaliana]	9	20	7	12
AT2G34460	no change	-0.1856987375980621	0.6423596740899558	0.8808218591373586	AT2G34460	--	GO:0005783,endoplasmic reticulum; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule;	--	NP_565789.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	107	125	61	53
AT1G13920	no change	0.6500432796066349	0.6436692978911707	0.8819085917626855	AT1G13920	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:1901700,response to oxygen-containing compound;	--	NP_001321408.1 Remorin family protein [Arabidopsis thaliana]	10	3	10	4
AT4G30440	no change	-0.265813847925644	0.6438452508821493	0.8819085917626855	AT4G30440	--	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0032580,Golgi cisterna membrane; GO:0033481,galacturonate biosynthetic process; GO:0050378,UDP-glucuronate 4-epimerase activity; GO:0050829,defense response to Gram-negative bacterium; GO:0050832,defense response to fungus; GO:0071456,cellular response to hypoxia;	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]; K08679;	NP_194773.1 UDP-D-glucuronate 4-epimerase 1 [Arabidopsis thaliana]	843	766	589	454
AT3G15190	no change	-0.22494479841697057	0.6442529777578899	0.8819923767583808	AT3G15190	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-S20, rpsT; small subunit ribosomal protein S20; K02968;	NP_188137.1 chloroplast 30S ribosomal protein S20 [Arabidopsis thaliana]	695	654	330	323
AT3G23020	no change	0.3428933839891961	0.6448056084188007	0.8822743405515311	AT3G23020	--	GO:0005515,protein binding; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0010343,singlet oxygen-mediated programmed cell death; GO:1904821,chloroplast disassembly;	--	NP_188942.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	26	26	16	26
AT2G22990	no change	0.3379455977730501	0.6460373838976456	0.8828534461915146	AT2G22990	--	GO:0004185,serine-type carboxypeptidase activity; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0009698,phenylpropanoid metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0016754,sinapoylglucose-malate O-sinapoyltransferase activity; GO:0019748,secondary metabolic process; GO:0047158,sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity; GO:0099503,secretory vesicle;	SCPL8, SNG1; serine carboxypeptidase-like 8 [EC:3.4.16.- 2.3.1.92]; K09757;	NP_001154529.1 sinapoylglucose 1 [Arabidopsis thaliana]	510	575	477	306
AT5G25754	no change	0.3504875531651095	0.6470284721441754	0.8828534461915146	AT5G25754	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003674,molecular_function; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex;	--	NP_680222.1 RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana]	34	22	16	16
AT3G23070	no change	0.24692798760421653	0.6471684792168122	0.8828534461915146	AT3G23070	--	GO:0000373,Group II intron splicing; GO:0000375,RNA splicing, via transesterification reactions; GO:0003674,molecular_function; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0048316,seed development; GO:1990904,ribonucleoprotein complex;	--	NP_188947.2 CRM family member 3A [Arabidopsis thaliana]	86	122	59	39
AT1G07120	no change	0.6141183249925959	0.6476435110770717	0.8828534461915146	AT1G07120	--	GO:0003674,molecular_function; GO:0009658,chloroplast organization; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope;	--	NP_172192.1 CHUP1-like protein [Arabidopsis thaliana]	6	10	6	6
AT4G09650	no change	-0.3249337953061655	0.6484228957625451	0.8828534461915146	AT4G09650	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport;	ATPF1D, atpH; F-type H+-transporting ATPase subunit delta; K02113;	NP_192703.1 F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana]	938	894	325	267
AT3G25140	no change	-0.23955309586884077	0.6484877983556132	0.8828534461915146	AT3G25140	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005739,mitochondrion; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0007155,cell adhesion; GO:0010289,homogalacturonan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization;	GAUT; alpha-1,4-galacturonosyltransferase [EC:2.4.1.43]; K13648;	NP_189150.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	752	754	470	341
AT4G18830	no change	0.5163892735979232	0.6485060756237409	0.8828534461915146	AT4G18830	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009553,embryo sac development; GO:0030863,cortical cytoskeleton; GO:0043622,cortical microtubule organization; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_193618.2 ovate family protein 5 [Arabidopsis thaliana]	7	17	25	3
AT5G08510	no change	-0.4537084342299895	0.6489022572081224	0.8828534461915146	AT5G08510	--	GO:0005515,protein binding;	--	NP_196468.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	12	16	13	9
AT1G50440	no change	0.4300615256443834	0.6493004425932002	0.8828534461915146	AT1G50440	--	GO:0008150,biological_process; GO:0008270,zinc ion binding; GO:0016020,membrane;	--	NP_001117462.1 RING/FYVE/PHD zinc finger superfamily protein [Arabidopsis thaliana]	30	11	15	8
AT1G11303	no change	-0.4781705322221619	0.6493253164962856	0.8828534461915146	AT1G11303	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0031625,ubiquitin protein ligase binding; GO:0048544,recognition of pollen; GO:0106310,protein serine kinase activity;	--	KAG7596651.1 Protein kinase domain [Arabidopsis suecica]	13	19	12	3
AT2G46000	no change	-0.2676212596031764	0.6498353579697942	0.8828534461915146	AT2G46000	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum;	--	NP_566061.1 LDL receptor wingless signaling/trafficking chaperone [Arabidopsis thaliana]	43	49	35	21
AT5G66600	no change	-0.4083774941570333	0.6498802499893219	0.8828534461915146	AT5G66600	--	--	--	NP_001330057.1 electron transporter, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]	17	19	14	18
AT4G35940	no change	-0.34188541104665227	0.6499749768854184	0.8828534461915146	AT4G35940	--	--	--	NP_195319.1 hypothetical protein AT4G35940 [Arabidopsis thaliana]	29	30	26	10
AT1G16280	no change	-0.24853007270138328	0.65091135454197	0.8828534461915146	AT1G16280	--	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0009553,embryo sac development; GO:0009561,megagametogenesis; GO:0009791,post-embryonic development; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0090406,pollen tube;	--	NP_173078.1 RNA helicase 36 [Arabidopsis thaliana]	44	56	40	30
AT4G00360	no change	0.1656759775599861	0.6509726022113118	0.8828534461915146	AT4G00360	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0006631,fatty acid metabolic process; GO:0006952,defense response; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0018685,alkane 1-monooxygenase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0070330,aromatase activity;	CYP86A4S; fatty acid omega-hydroxylase [EC:1.14.-.-]; K15398;	NP_191946.1 cytochrome P450, family 86, subfamily A, polypeptide 2 [Arabidopsis thaliana]	242	173	178	134
AT3G07080	no change	0.26942476208378263	0.651029014429341	0.8828534461915146	AT3G07080	--	GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_187364.1 EamA-like transporter family [Arabidopsis thaliana]	49	22	48	31
AT3G56460	no change	-0.24627400582799552	0.6511260976430149	0.8828534461915146	AT3G56460	--	GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity;	qor, CRYZ; NADPH:quinone reductase [EC:1.6.5.5]; K00344;	NP_191205.1 GroES-like zinc-binding alcohol dehydrogenase family protein [Arabidopsis thaliana]	446	412	212	192
AT1G15810	no change	0.132665142882046	0.6518369756583678	0.8833467002399075	AT1G15810	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0043229,intracellular organelle; GO:1990904,ribonucleoprotein complex;	--	NP_563982.1 S15/NS1, RNA-binding protein [Arabidopsis thaliana]	192	176	139	102
AT1G09310	no change	-0.1481916760495947	0.6538821626148152	0.8856466758141058	AT1G09310	--	GO:0005576,extracellular region; GO:0005770,late endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009737,response to abscisic acid; GO:0048046,apoplast;	--	NP_563841.1 plant/protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]	2147	1790	1425	927
AT5G65520	no change	0.3238141165299151	0.6567989441705527	0.8880794913896762	AT5G65520	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_201355.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	23	32	20	21
AT4G04320	no change	0.24880546025230463	0.6570961602752354	0.8880794913896762	AT4G04320	--	GO:0005759,mitochondrial matrix; GO:0005777,peroxisome; GO:0005782,peroxisomal matrix; GO:0005829,cytosol; GO:0006085,acetyl-CoA biosynthetic process; GO:0006633,fatty acid biosynthetic process; GO:0046321,positive regulation of fatty acid oxidation; GO:0050080,malonyl-CoA decarboxylase activity; GO:2001294,malonyl-CoA catabolic process;	MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]; K01578;	NP_192341.2 malonyl-CoA decarboxylase family protein [Arabidopsis thaliana]	49	58	29	38
AT4G25270	no change	-0.4086693815157574	0.6570972783758688	0.8880794913896762	AT4G25270	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_194257.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	26	28	14	6
AT3G15060	no change	0.40666498207410307	0.6571857538005402	0.8880794913896762	AT3G15060	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis;	--	NP_188124.1 RAB GTPase homolog A1G [Arabidopsis thaliana]	19	11	11	20
AT1G07725	no change	-0.5038076237656774	0.6578852025952956	0.8880794913896762	AT1G07725	--	GO:0000145,exocyst; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0006887,exocytosis; GO:0015031,protein transport; GO:0090406,pollen tube;	EXOC7, EXO70; exocyst complex component 7; K07195;	NP_683286.2 exocyst subunit exo70 family protein H6 [Arabidopsis thaliana]	22	9	6	6
AT1G69060	no change	-0.3314920823878875	0.6595092786546131	0.8880794913896762	AT1G69060	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function;	--	NP_849864.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	24	15	33	16
AT4G28040	no change	0.4221673076913888	0.6604399747352454	0.8880794913896762	AT4G28040	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_001031735.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	16	16	15	8
AT3G25490	no change	0.49575230933923464	0.6604477875328524	0.8880794913896762	AT3G25490	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_189176.1 Protein kinase family protein [Arabidopsis thaliana]	22	14	4	7
AT2G36120	no change	-0.3980693671820727	0.660632327322754	0.8880794913896762	AT2G36120	--	GO:0005576,extracellular region; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0048366,leaf development;	--	NP_181156.1 Glycine-rich protein family [Arabidopsis thaliana]	26	25	10	16
AT1G15170	no change	0.29185657510881935	0.6606551067204056	0.8880794913896762	AT1G15170	--	GO:0009507,chloroplast; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane;	--	NP_172969.1 MATE efflux family protein [Arabidopsis thaliana]	41	31	24	19
AT5G18960	no change	0.28982455917351935	0.6606858099605247	0.8880794913896762	AT5G18960	FAR1	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_001330829.1 FAR1-related sequence 12 [Arabidopsis thaliana]	177	140	103	110
AT2G41770	no change	0.2706949341014706	0.6608561778861624	0.8880794913896762	AT2G41770	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042802,identical protein binding; GO:0052324,plant-type cell wall cellulose biosynthetic process; GO:2001009,regulation of plant-type cell wall cellulose biosynthetic process;	--	KAG7639365.1 STELLO-like [Arabidopsis thaliana x Arabidopsis arenosa]	292	256	185	190
AT1G32120	no change	0.40804240443008943	0.660965370362669	0.8880794913896762	AT1G32120	--	GO:0010073,meristem maintenance; GO:0048507,meristem development;	--	NP_174491.2 serine/threonine-protein phosphatase 7 long form-like protein [Arabidopsis thaliana]	32	21	15	4
AT5G25265	no change	-0.25249856024318973	0.6612180794610325	0.8880794913896762	AT5G25265	--	GO:0000325,plant-type vacuole; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005801,cis-Golgi network; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0102562,hydroxyproline O-arbinofuranose transferase activity; GO:1990585,hydroxyproline O-arabinosyltransferase activity;	HPAT; hydroxyproline O-arabinosyltransferase [EC:2.4.2.58]; K20782;	NP_680219.1 Hyp O-arabinosyltransferase-like protein [Arabidopsis thaliana]	173	129	157	103
AT3G22160	no change	-0.508254831981171	0.6615644454072198	0.8880794913896762	AT3G22160	--	GO:0005515,protein binding; GO:0005634,nucleus;	--	NP_566699.1 VQ motif-containing protein [Arabidopsis thaliana]	6	16	8	9
AT5G66190	no change	0.15516915080909843	0.6622839738815961	0.8880794913896762	AT5G66190	--	GO:0004324,ferredoxin-NADP+ reductase activity; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009767,photosynthetic electron transport chain; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0045157,electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast; GO:0098807,chloroplast thylakoid membrane protein complex;	petH; ferredoxin--NADP+ reductase [EC:1.18.1.2]; K02641;	NP_001078805.1 ferredoxin-NADP[+]-oxidoreductase 1 [Arabidopsis thaliana]	1462	1406	1145	972
AT5G41610	no change	0.3236341017487252	0.6623463497868319	0.8880794913896762	AT5G41610	--	GO:0005770,late endosome; GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006885,regulation of pH; GO:0012505,endomembrane system; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_001332436.1 cation/H+ exchanger 18 [Arabidopsis thaliana]	41	22	23	13
AT3G01470	no change	-0.313260450199758	0.6627212803936913	0.8880794913896762	AT3G01470	HD-ZIP	GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009637,response to blue light; GO:0009651,response to salt stress; GO:0009965,leaf morphogenesis; GO:0017148,negative regulation of translation; GO:0042803,protein homodimerization activity; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_186796.1 homeobox 1 [Arabidopsis thaliana]	45	19	42	13
AT3G18080	no change	-0.19186487917425857	0.6631034647935703	0.8880794913896762	AT3G18080	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004567,beta-mannosidase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0047668,amygdalin beta-glucosidase activity; GO:0080079,cellobiose glucosidase activity; GO:0080081,4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity; GO:0080082,esculin beta-glucosidase activity; GO:0080083,beta-gentiobiose beta-glucosidase activity; GO:0102483,scopolin beta-glucosidase activity;	bglB; beta-glucosidase [EC:3.2.1.21]; K05350;	NP_188436.1 B-S glucosidase 44 [Arabidopsis thaliana]	838	787	652	511
AT3G15570	no change	-0.3580857751348372	0.6631507050721965	0.8880794913896762	AT3G15570	--	GO:0016567,protein ubiquitination;	--	NP_188176.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	29	26	11	11
AT1G14280	no change	0.2584886452409858	0.6633010863330042	0.8880794913896762	AT1G14280	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009585,red, far-red light phototransduction; GO:0009638,phototropism; GO:0010017,red or far-red light signaling pathway; GO:0016020,membrane; GO:0048366,leaf development;	--	NP_172880.1 phytochrome kinase substrate 2 [Arabidopsis thaliana]	203	202	159	109
AT5G43950	no change	0.44341503299507146	0.6635507143671152	0.8880794913896762	AT5G43950	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_199208.1 vacuolar protein sorting-associated protein (DUF946) [Arabidopsis thaliana]	12	7	13	13
AT1G37130	no change	0.2397873092927849	0.6643812232908276	0.8880794913896762	AT1G37130	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006809,nitric oxide biosynthetic process; GO:0008940,nitrate reductase activity; GO:0009416,response to light stimulus; GO:0009610,response to symbiotic fungus; GO:0009635,response to herbicide; GO:0009703,nitrate reductase (NADH) activity; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0030151,molybdenum ion binding; GO:0042128,nitrate assimilation; GO:0042802,identical protein binding; GO:0043546,molybdopterin cofactor binding; GO:0046872,metal ion binding; GO:0050464,nitrate reductase (NADPH) activity; GO:0071949,FAD binding;	NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3]; K10534;	NP_174901.1 nitrate reductase 2 [Arabidopsis thaliana]	105	76	72	43
AT3G54890	no change	0.24964973711951188	0.6645644259681094	0.8880794913896762	AT3G54890	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding;	LHCA1; light-harvesting complex I chlorophyll a/b binding protein 1; K08907;	NP_191049.1 chlorophyll a-b binding protein 6 [Arabidopsis thaliana]	2453	2497	891	713
AT4G38550	no change	-0.22350769333108025	0.6646877341938674	0.8880794913896762	AT4G38550	--	GO:0005886,plasma membrane;	--	NP_001328679.1 phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]	71	64	41	24
AT3G21270	no change	-0.2935611022867164	0.6651599834078685	0.8880794913896762	AT3G21270	Dof	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	AAK76521.1 putative Dof zinc finger protein [Arabidopsis thaliana]	51	62	45	50
AT1G27920	no change	0.39921057972378016	0.6655623967140378	0.8880794913896762	AT1G27920	--	GO:0000226,microtubule cytoskeleton organization; GO:0000922,spindle pole; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0051301,cell division;	--	NP_174113.2 microtubule-associated protein 65-8 [Arabidopsis thaliana]	22	17	16	7
AT2G35520	no change	0.2690866597957253	0.6658920037425797	0.8880794913896762	AT2G35520	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0008250,oligosaccharyltransferase complex; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0060548,negative regulation of cell death;	OST2, DAD1; oligosaccharyltransferase complex subunit epsilon; K12668;	NP_001318358.1 Defender against death (DAD family) protein [Arabidopsis thaliana]	107	85	101	73
AT4G23540	no change	0.17121275868951005	0.666144844936478	0.8880794913896762	AT4G23540	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing;	--	NP_194085.4 ARM repeat superfamily protein [Arabidopsis thaliana]	149	148	137	129
AT3G10360	no change	0.28890236778787326	0.6661828221792908	0.8880794913896762	AT3G10360	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0006417,regulation of translation; GO:0010608,post-transcriptional regulation of gene expression;	--	NP_187647.2 pumilio 4 [Arabidopsis thaliana]	152	108	62	70
AT2G38630	no change	-0.26389425272228983	0.6670792105197758	0.8880794913896762	AT2G38630	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_181397.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]	44	67	24	31
AT4G26130	no change	-0.1673365483649496	0.6670835467017635	0.8880794913896762	AT4G26130	--	GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_194343.1 cotton fiber protein [Arabidopsis thaliana]	274	283	175	121
AT3G11030	no change	0.3859480346920581	0.6675666813433673	0.8880794913896762	AT3G11030	--	GO:0000138,Golgi trans cisterna; GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; GO:1990538,xylan O-acetyltransferase activity; GO:1990937,xylan acetylation;	--	KAG7630802.1 PMR5 N-terminal domain [Arabidopsis suecica]	11	18	25	10
AT3G46950	no change	-0.4716796960874472	0.6680592084815536	0.8880794913896762	AT3G46950	--	GO:0003690,double-stranded DNA binding; GO:0006353,DNA-templated transcription termination; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009658,chloroplast organization; GO:0032502,developmental process;	--	NP_190279.1 Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	14	24	5	8
AT1G21680	no change	0.31852385785223447	0.6681201127926828	0.8880794913896762	AT1G21680	--	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0099503,secretory vesicle;	--	NP_564147.1 DPP6 N-terminal domain-like protein [Arabidopsis thaliana]	358	319	211	166
AT2G04378	no change	0.2759678497530098	0.6682405603187543	0.8880794913896762	AT2G04378	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001118266.1 Beta-galactosidase related protein [Arabidopsis thaliana]	39	43	47	23
AT1G20650	no change	0.18800402430500185	0.669790975810376	0.8896753827961414	AT1G20650	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_173489.2 Protein kinase superfamily protein [Arabidopsis thaliana]	89	103	88	38
AT4G34160	no change	0.4944757731032574	0.6703436787456409	0.8899450508125488	AT4G34160	--	GO:0000079,regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0000082,G1/S transition of mitotic cell cycle; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0009735,response to cytokinin; GO:0009744,response to sucrose; GO:0010444,guard mother cell differentiation; GO:0016538,cyclin-dependent protein serine/threonine kinase regulator activity; GO:0044772,mitotic cell cycle phase transition; GO:0048316,seed development; GO:0051301,cell division;	CYCD3; cyclin D3, plant; K14505;	NP_195142.1 CYCLIN D3;1 [Arabidopsis thaliana]	19	7	17	3
AT1G48570	no change	0.11959827192188044	0.6715938481573714	0.8904127853689263	AT1G48570	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0046872,metal ion binding;	--	NP_175290.1 zinc finger (Ran-binding) family protein [Arabidopsis thaliana]	255	189	261	199
AT4G37660	no change	0.24367032977424777	0.6719321751169833	0.8904127853689263	AT4G37660	--	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:1990904,ribonucleoprotein complex;	RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12; K02935;	NP_195481.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein [Arabidopsis thaliana]	60	25	40	50
AT1G22360	no change	0.29619289759144074	0.672368566071214	0.8904127853689263	AT1G22360	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173653.1 UDP-glucosyl transferase 85A2 [Arabidopsis thaliana]	37	32	36	37
AT2G44360	no change	-0.3129115429950957	0.6724682250274846	0.8904127853689263	AT2G44360	--	GO:0005575,cellular_component;	--	NP_181964.1 ecotropic viral integration site protein [Arabidopsis thaliana]	17	16	37	34
AT5G23070	no change	0.2299539935334982	0.6727597568017666	0.8904127853689263	AT5G23070	--	GO:0000166,nucleotide binding; GO:0004797,thymidine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009157,deoxyribonucleoside monophosphate biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046104,thymidine metabolic process; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:0090351,seedling development;	tdk, TK; thymidine kinase [EC:2.7.1.21]; K00857;	NP_568426.1 Thymidine kinase [Arabidopsis thaliana]	36	29	55	38
AT2G28470	no change	0.34967130675695657	0.6732375717499774	0.8904127853689263	AT2G28470	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0048046,apoplast;	--	NP_001324192.1 beta-galactosidase 8 [Arabidopsis thaliana]	1283	1128	692	498
AT5G38630	no change	-0.11416826970226256	0.6732383931161527	0.8904127853689263	AT5G38630	--	GO:0000293,ferric-chelate reductase activity; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019852,L-ascorbic acid metabolic process; GO:0046872,metal ion binding; GO:0055085,transmembrane transport; GO:0140571,transmembrane ascorbate ferrireductase activity;	--	NP_198679.1 cytochrome B561-1 [Arabidopsis thaliana]	227	172	186	145
AT3G51400	no change	0.16035090074404135	0.6734949358880876	0.8904127853689263	AT3G51400	--	GO:0048364,root development; GO:0048367,shoot system development;	--	NP_190708.1 hypothetical protein (DUF241) [Arabidopsis thaliana]	132	99	94	54
AT2G47380	no change	0.3082046919191388	0.6757502710663904	0.892320348752889	AT2G47380	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005746,mitochondrial respirasome; GO:0016020,membrane;	--	NP_001324866.1 Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]	87	73	91	88
AT5G04470	no change	0.600180342678911	0.6757863945246726	0.892320348752889	AT5G04470	--	GO:0004860,protein kinase inhibitor activity; GO:0004861,cyclin-dependent protein serine/threonine kinase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0007049,cell cycle; GO:0010026,trichome differentiation; GO:0032875,regulation of DNA endoreduplication; GO:0042023,DNA endoreduplication; GO:0045736,negative regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0045786,negative regulation of cell cycle; GO:0045839,negative regulation of mitotic nuclear division;	--	NP_196067.1 cyclin-dependent protein kinase inhibitor [Arabidopsis thaliana]	4	10	5	6
AT5G41020	no change	0.31780715517107616	0.6759896394481612	0.892320348752889	AT5G41020	MYB_related	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_198918.1 myb family transcription factor [Arabidopsis thaliana]	39	49	35	27
AT2G46110	no change	-0.32873190366571947	0.6775431109482549	0.8939073184879776	AT2G46110	--	GO:0000287,magnesium ion binding; GO:0003824,catalytic activity; GO:0003864,3-methyl-2-oxobutanoate hydroxymethyltransferase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0015940,pantothenate biosynthetic process; GO:0016740,transferase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]; K00606;	NP_182135.1 ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana]	28	39	14	11
AT2G44490	no change	0.2553025109008171	0.6779070719026979	0.893924092224024	AT2G44490	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009617,response to bacterium; GO:0009651,response to salt stress; GO:0009682,induced systemic resistance; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019760,glucosinolate metabolic process; GO:0019762,glucosinolate catabolic process; GO:0042344,indole glucosinolate catabolic process; GO:0042742,defense response to bacterium; GO:0050832,defense response to fungus; GO:0052544,defense response by callose deposition in cell wall; GO:0102483,scopolin beta-glucosidase activity;	E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188;	NP_181977.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	251	253	199	103
AT5G59450	no change	0.3118574452730378	0.678404126197588	0.8941162616120464	AT5G59450	GRAS	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_200753.1 GRAS family transcription factor [Arabidopsis thaliana]	48	78	56	64
AT1G17070	no change	0.26850641826704447	0.6791737078265951	0.8943797006907521	AT1G17070	--	GO:0000390,spliceosomal complex disassembly; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0008380,RNA splicing; GO:0031981,nuclear lumen; GO:0042752,regulation of circadian rhythm; GO:0043170,macromolecule metabolic process; GO:0044238,primary metabolic process; GO:0071008,U2-type post-mRNA release spliceosomal complex; GO:1990446,U1 snRNP binding;	--	NP_173150.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]	92	58	63	56
AT3G17170	no change	0.2422525498472794	0.6793068610747441	0.8943797006907521	AT3G17170	--	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0006414,translational elongation; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010071,root meristem specification; GO:0010082,regulation of root meristem growth; GO:0010109,regulation of photosynthesis; GO:0010468,regulation of gene expression; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0042793,plastid transcription; GO:0042794,plastid rRNA transcription; GO:0051644,plastid localization; GO:0070181,small ribosomal subunit rRNA binding; GO:0080022,primary root development; GO:1990904,ribonucleoprotein complex; GO:2000023,regulation of lateral root development; GO:2001279,regulation of unsaturated fatty acid biosynthetic process;	--	NP_566568.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]	188	153	157	103
AT2G46020	no change	0.27733871494139706	0.6801652079464888	0.8948882448252024	AT2G46020	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0008094,ATP-dependent activity, acting on DNA; GO:0010199,organ boundary specification between lateral organs and the meristem; GO:0010449,root meristem growth; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0040029,epigenetic regulation of gene expression; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048731,system development; GO:0051252,regulation of RNA metabolic process; GO:0090691,formation of plant organ boundary; GO:0140658,ATP-dependent chromatin remodeler activity; GO:1900036,positive regulation of cellular response to heat; GO:1903798,regulation of miRNA maturation;	--	NP_001323760.1 transcription regulatory protein SNF2 [Arabidopsis thaliana]	449	483	364	268
AT5G53740	no change	0.21319324519962812	0.680452244639472	0.8948882448252024	AT5G53740	--	GO:0005576,extracellular region; GO:0009567,double fertilization forming a zygote and endosperm; GO:0031982,vesicle; GO:0080155,regulation of double fertilization forming a zygote and endosperm; GO:2000008,regulation of protein localization to cell surface;	--	NP_200185.1 hypothetical protein AT5G53740 [Arabidopsis thaliana]	38	44	63	39
AT3G28770	no change	-0.2132290225721647	0.6807479929200754	0.8948882448252024	AT3G28770	--	GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_189519.1 transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]	126	122	50	52
AT1G78570	no change	-0.18807014116197251	0.6813461045349779	0.8952120991437886	AT1G78570	--	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008152,metabolic process; GO:0008460,dTDP-glucose 4,6-dehydratase activity; GO:0009225,nucleotide-sugar metabolic process; GO:0009506,plasmodesma; GO:0010253,UDP-rhamnose biosynthetic process; GO:0010280,UDP-L-rhamnose synthase activity; GO:0010315,auxin export across the plasma membrane; GO:0016491,oxidoreductase activity; GO:0016829,lyase activity; GO:0016853,isomerase activity; GO:0030154,cell differentiation; GO:0042127,regulation of cell population proliferation; GO:0050377,UDP-glucose 4,6-dehydratase activity; GO:0051555,flavonol biosynthetic process; GO:0071555,cell wall organization;	RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76]; K12450;	NP_177978.1 rhamnose biosynthesis 1 [Arabidopsis thaliana]	2784	2612	1283	1086
AT4G16480	no change	-0.25212687372185627	0.6822833505063832	0.8958646253203723	AT4G16480	--	GO:0005366,myo-inositol:proton symporter activity; GO:0005886,plasma membrane; GO:0015293,symporter activity; GO:0015798,myo-inositol transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_001328028.1 inositol transporter 4 [Arabidopsis thaliana]	256	180	95	71
AT4G20300	no change	0.30183191910132656	0.682546761688095	0.8958646253203723	AT4G20300	--	GO:0005515,protein binding;	--	NP_567597.2 Serine/Threonine-kinase, putative (DUF1639) [Arabidopsis thaliana]	162	136	130	130
AT5G23940	no change	-0.1904091848972591	0.6850157560561089	0.8984135885676826	AT5G23940	--	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0010090,trichome morphogenesis; GO:0010143,cutin biosynthetic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0051179,localization; GO:0090626,plant epidermis morphogenesis;	DCR; BAHD acyltransferase [EC:2.3.1.-]; K19747;	NP_197782.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	3132	3103	1743	1306
AT5G53570	no change	-0.16205709278934943	0.6851948036973956	0.8984135885676826	AT5G53570	--	GO:0005096,GTPase activator activity; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0006952,defense response; GO:0050790,regulation of catalytic activity; GO:0090630,activation of GTPase activity;	--	NP_200169.1 Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]	93	66	85	68
AT1G33050	no change	-0.20711009527458743	0.6862084986888909	0.898804712458976	AT1G33050	--	GO:0005515,protein binding;	--	NP_001185128.1 hypothetical protein AT1G33050 [Arabidopsis thaliana]	49	58	51	34
AT4G35860	no change	-0.2149303930959068	0.6865276117149869	0.898804712458976	AT4G35860	--	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030100,regulation of endocytosis;	RAB2A; Ras-related protein Rab-2A; K07877;	NP_195311.1 GTP-binding 2 [Arabidopsis thaliana]	194	172	195	87
AT3G52210	no change	-0.3536227494836215	0.6866470720324089	0.898804712458976	AT3G52210	--	GO:0003723,RNA binding; GO:0004482,mRNA (guanine-N7-)-methyltransferase activity; GO:0005634,nucleus; GO:0005845,mRNA cap binding complex; GO:0006370,7-methylguanosine mRNA capping; GO:0006397,mRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0106005,RNA 5'-cap (guanine-N7)-methylation;	RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]; K00565;	NP_190789.3 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	17	25	17	9
AT2G18670	no change	-0.4478638361187919	0.6872002278861317	0.898804712458976	AT2G18670	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_179457.1 RING/U-box superfamily protein [Arabidopsis thaliana]	7	14	16	6
AT1G27960	no change	0.22923983438024909	0.6873531759776195	0.898804712458976	AT1G27960	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization;	--	NP_174117.2 evolutionarily conserved C-terminal region 9 [Arabidopsis thaliana]	135	106	156	91
AT2G01735	no change	-0.3879633876399051	0.6876120923998531	0.898804712458976	AT2G01735	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_001325257.1 RING-finger protein for embryogenesi [Arabidopsis thaliana]	26	18	12	12
AT5G61340	no change	0.3263639407968064	0.6882002650873641	0.8991117426321056	AT5G61340	--	GO:0016020,membrane;	--	NP_001332684.1 transmembrane protein [Arabidopsis thaliana]	29	22	27	8
AT1G61770	no change	-0.24862997616579816	0.6887128599958061	0.8993197684398802	AT1G61770	--	GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006457,protein folding; GO:0016020,membrane;	--	NP_176370.2 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	153	123	91	79
AT5G58340	no change	-0.4137338302636273	0.6894315797067954	0.8997805515312883	AT5G58340	MYB_related	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_001190566.1 myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]	14	32	6	15
AT1G22380	no change	-0.2178033505620487	0.6897728314489365	0.8997805515312883	AT1G22380	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_173655.2 UDP-glucosyl transferase 85A3 [Arabidopsis thaliana]	350	307	150	118
AT4G02770	no change	0.16537224388187963	0.6906497932983586	0.9002284439028623	AT4G02770	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0140547,acquisition of seed longevity;	psaD; photosystem I subunit II; K02692;	NP_192186.1 photosystem I subunit D-1 [Arabidopsis thaliana]	2612	2440	1442	998
AT5G41920	no change	0.3129350209175712	0.6908236349478546	0.9002284439028623	AT5G41920	GRAS	GO:0000976,transcription cis-regulatory region binding; GO:0001714,endodermal cell fate specification; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding; GO:0048366,leaf development; GO:0090610,bundle sheath cell fate specification;	--	NP_199007.1 GRAS family transcription factor [Arabidopsis thaliana]	23	26	13	24
AT4G32710	no change	0.2711322502917337	0.6918046976269958	0.90104552480077	AT4G32710	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_001320117.1 Protein kinase superfamily protein [Arabidopsis thaliana]	141	121	84	63
AT3G15760	no change	-0.5200981781773564	0.6926203110677016	0.9011564770764342	AT3G15760	--	GO:0016020,membrane;	--	NP_566525.1 cytochrome P450 family protein [Arabidopsis thaliana]	13	7	5	5
AT4G36770	no change	-0.33986437739101305	0.6929332617109442	0.9011564770764342	AT4G36770	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_195395.4 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	36	29	14	5
AT5G52190	no change	-0.3283186211686786	0.6929521515279299	0.9011564770764342	AT5G52190	--	GO:0005829,cytosol; GO:0016853,isomerase activity; GO:0097367,carbohydrate derivative binding; GO:1901135,carbohydrate derivative metabolic process;	--	NP_200032.1 Sugar isomerase (SIS) family protein [Arabidopsis thaliana]	27	22	16	9
AT5G66280	no change	0.31840649224580986	0.6934174281613128	0.9013009982995612	AT5G66280	--	GO:0005515,protein binding; GO:0008446,GDP-mannose 4,6-dehydratase activity; GO:0009536,plastid; GO:0016829,lyase activity; GO:0019673,GDP-mannose metabolic process; GO:0042350,GDP-L-fucose biosynthetic process; GO:0042351,'de novo' GDP-L-fucose biosynthetic process;	gmd, GMDS; GDPmannose 4,6-dehydratase [EC:4.2.1.47]; K01711;	NP_201429.1 GDP-D-mannose 4,6-dehydratase 1 [Arabidopsis thaliana]	33	19	14	15
AT4G25180	no change	0.3978119905401307	0.6941614568942462	0.9017869960613152	AT4G25180	--	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006383,transcription by RNA polymerase III;	RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4; K03026;	NP_194248.2 RNA polymerase III RPC4 [Arabidopsis thaliana]	15	18	6	15
AT1G32740	no change	0.3277668169620416	0.6945000048252172	0.9017869960613152	AT1G32740	--	GO:0004842,ubiquitin-protein transferase activity; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding;	--	NP_564408.1 SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]	20	12	17	20
AT4G36940	no change	0.12988185124806462	0.6955668302736192	0.9027116690700464	AT4G36940	--	GO:0004514,nicotinate-nucleotide diphosphorylase (carboxylating) activity; GO:0004516,nicotinate phosphoribosyltransferase activity; GO:0005829,cytosol; GO:0009435,NAD biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016874,ligase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0034355,NAD salvage; GO:0046872,metal ion binding;	pncB, NAPRT1; nicotinate phosphoribosyltransferase [EC:6.3.4.21]; K00763;	NP_195412.3 nicotinate phosphoribosyltransferase 1 [Arabidopsis thaliana]	151	115	111	92
AT4G02200	no change	0.3323606855578394	0.6963218295426037	0.9032309154872205	AT4G02200	--	GO:0005634,nucleus;	--	NP_001154200.1 Drought-responsive family protein [Arabidopsis thaliana]	21	21	12	16
AT5G02150	no change	0.4636313579975102	0.6968996293397167	0.9035198964185324	AT5G02150	--	GO:0000774,adenyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0008150,biological_process;	HSPBP1, FES1; hsp70-interacting protein; K09562;	NP_001332564.1 Fes1C [Arabidopsis thaliana]	19	9	15	2
AT3G52260	no change	0.321582501628086	0.6979257278135064	0.9038725969067486	AT3G52260	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016020,membrane; GO:0016853,isomerase activity;	--	NP_974416.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	38	19	15	10
AT4G05180	no change	0.30920239313290665	0.6983562620325486	0.9038725969067486	AT4G05180	--	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast;	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901;	NP_001319873.1 photosystem II subunit Q-2 [Arabidopsis thaliana]	2245	1949	819	639
AT1G04350	no change	0.2116426881707083	0.6983856018984466	0.9038725969067486	AT1G04350	--	GO:0005576,extracellular region; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_171930.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	72	88	83	62
AT4G15140	no change	-0.2795381740329237	0.6987345609349364	0.9038725969067486	AT4G15140	--	--	--	NP_567459.5 hypothetical protein AT4G15140 [Arabidopsis thaliana]	32	33	19	20
AT5G42490	no change	-0.48263525253984696	0.6990769724748578	0.9038725969067486	AT5G42490	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding;	--	NP_001332452.1 ATP binding microtubule motor family protein [Arabidopsis thaliana]	15	4	7	7
AT2G31900	no change	-0.18829811183788348	0.699302610337677	0.9038725969067486	AT2G31900	--	GO:0000146,microfilament motor activity; GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003779,actin binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0016459,myosin complex; GO:0016461,unconventional myosin complex; GO:0030048,actin filament-based movement; GO:0030050,vesicle transport along actin filament; GO:0031982,vesicle; GO:0051015,actin filament binding;	MYO5; myosin V; K10357;	NP_001323600.1 myosin-like protein XIF [Arabidopsis thaliana]	69	65	42	37
AT2G22080	no change	0.18948784132088647	0.6997348517730633	0.9039721816053023	AT2G22080	--	GO:0005634,nucleus; GO:0006979,response to oxidative stress;	--	NP_179799.2 transmembrane protein [Arabidopsis thaliana]	200	202	117	79
AT3G12750	no change	-0.21522836458070227	0.7006416142526795	0.9046843776119072	AT3G12750	--	GO:0000041,transition metal ion transport; GO:0005385,zinc ion transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006829,zinc ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0030001,metal ion transport; GO:0046873,metal ion transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071577,zinc ion transmembrane transport; GO:0098662,inorganic cation transmembrane transport;	--	NP_187881.1 zinc transporter 1 precursor [Arabidopsis thaliana]	54	58	36	26
AT3G27170	no change	0.3173674815771239	0.7031244992180775	0.907052302151462	AT3G27170	--	GO:0005244,voltage-gated ion channel activity; GO:0005247,voltage-gated chloride channel activity; GO:0005254,chloride channel activity; GO:0005515,protein binding; GO:0006811,ion transport; GO:0006821,chloride transport; GO:0009671,nitrate:proton symporter activity; GO:0009705,plant-type vacuole membrane; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0034707,chloride channel complex; GO:0034765,regulation of ion transmembrane transport; GO:0043231,intracellular membrane-bounded organelle; GO:0055085,transmembrane transport; GO:1902476,chloride transmembrane transport; GO:1902600,proton transmembrane transport;	--	NP_189353.1 chloride channel B [Arabidopsis thaliana]	16	14	20	17
AT1G74440	no change	-0.6221599745646564	0.7031882876796992	0.907052302151462	AT1G74440	--	GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0046521,sphingoid catabolic process; GO:0102672,fatty acid alpha-oxygenase activity;	--	NP_001322683.1 ER membrane protein, putative (DUF962) [Arabidopsis thaliana]	8	6	9	1
AT1G67870	no change	-0.20313328134281683	0.7035691255052183	0.9070610681115104	AT1G67870	--	GO:0008150,biological_process;	--	KAG7658789.1 hypothetical protein ISN44_As01g057450 [Arabidopsis suecica]	700	580	134	168
AT1G74070	no change	0.24118539948453943	0.7043416852042648	0.9070610681115104	AT1G74070	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016853,isomerase activity;	--	NP_565079.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	45	42	24	18
AT4G00910	no change	0.5090150981372474	0.7048291202477458	0.9070610681115104	AT4G00910	--	GO:0015743,malate transport; GO:0016020,membrane; GO:0098656,anion transmembrane transport;	--	NP_001319836.1 aluminum activated malate transporter family protein [Arabidopsis thaliana]	5	7	10	5
AT4G37300	no change	0.15037981072967144	0.7048433087471601	0.9070610681115104	AT4G37300	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009793,embryo development ending in seed dormancy;	--	NP_195447.1 maternal effect embryo arrest 59 [Arabidopsis thaliana]	313	172	340	244
AT1G17130	no change	0.15711709438352806	0.7052618129219418	0.9070610681115104	AT1G17130	--	GO:0000349,generation of catalytic spliceosome for first transesterification step; GO:0000398,mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0046872,metal ion binding; GO:0071006,U2-type catalytic step 1 spliceosome;	--	NP_001077550.1 coiled-coil protein (DUF572) [Arabidopsis thaliana]	110	102	87	74
AT1G03600	no change	-0.1908799125992342	0.70533353783602315	0.9070610681115104	AT1G03600	--	GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0010206,photosystem II repair; GO:0010207,photosystem II assembly; GO:0016020,membrane; GO:0071484,cellular response to light intensity;	psb27; photosystem II Psb27 protein; K08902;	NP_563687.1 photosystem II family protein [Arabidopsis thaliana]	280	230	152	152
AT1G07240	no change	0.23347926125737395	0.7063773296439455	0.9076513369382532	AT1G07240	--	GO:0005829,cytosol; GO:0008194,UDP-glycosyltransferase activity; GO:0009687,abscisic acid metabolic process; GO:0009819,drought recovery; GO:0010030,positive regulation of seed germination; GO:0010294,abscisic acid glucosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:1902265,abscisic acid homeostasis;	--	NP_172204.1 UDP-glucosyl transferase 71C5 [Arabidopsis thaliana]	60	35	22	30
AT5G51120	no change	-0.13501473588194468	0.7065058147248249	0.9076513369382532	AT5G51120	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008143,poly(A) binding; GO:0016020,membrane; GO:0016607,nuclear speck;	PABPN1, PABP2; polyadenylate-binding protein 2; K14396;	NP_001190512.1 polyadenylate-binding protein 1 [Arabidopsis thaliana]	151	209	132	66
AT2G40850	no change	0.5736882036366957	0.7082539612687409	0.9077011636073716	AT2G40850	--	GO:0000166,nucleotide binding; GO:0004430,1-phosphatidylinositol 4-kinase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046854,phosphatidylinositol phosphate biosynthetic process;	--	NP_181617.1 phosphoinositide 4-kinase gamma 1 [Arabidopsis thaliana]	9	7	1	9
AT3G62840	no change	-0.1507296642526308	0.7084158711666845	0.9077011636073716	AT3G62840	--	GO:0000387,spliceosomal snRNP assembly; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005682,U5 snRNP; GO:0005685,U1 snRNP; GO:0005686,U2 snRNP; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0030532,small nuclear ribonucleoprotein complex; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:1990904,ribonucleoprotein complex;	SNRPD2, SMD2; small nuclear ribonucleoprotein D2; K11096;	NP_001078331.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	199	199	184	126
AT2G46810	no change	-0.3812153341106477	0.708543592433758	0.9077011636073716	AT2G46810	bHLH	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009631,cold acclimation; GO:0042803,protein homodimerization activity; GO:0046983,protein dimerization activity;	--	NP_182204.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	13	8	20	8
AT5G11360	no change	0.406644903122336	0.7086226405263322	0.9077011636073716	AT5G11360	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_196697.2 Interleukin-1 receptor-associated kinase 4 protein [Arabidopsis thaliana]	12	8	7	15
AT5G20140	no change	0.18439921198754483	0.7086670376310731	0.9077011636073716	AT5G20140	--	GO:0005515,protein binding; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0020037,heme binding; GO:0110165,cellular anatomical entity;	--	NP_197514.2 SOUL heme-binding family protein [Arabidopsis thaliana]	60	41	60	41
AT2G45850	no change	0.2386423868846279	0.7092548167312911	0.9077011636073716	AT2G45850	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus;	--	NP_182109.1 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	59	38	46	13
AT4G26680	no change	0.4373265503492121	0.7094715642674757	0.9077011636073716	AT4G26680	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion;	--	NP_001190849.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	10	9	8	8
AT3G48580	no change	0.22212866934763745	0.7096993012743444	0.9077011636073716	AT3G48580	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005618,cell wall; GO:0005975,carbohydrate metabolic process; GO:0006073,cellular glucan metabolic process; GO:0008152,metabolic process; GO:0010411,xyloglucan metabolic process; GO:0016740,transferase activity; GO:0016762,xyloglucan:xyloglucosyl transferase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030247,polysaccharide binding; GO:0042546,cell wall biogenesis; GO:0048046,apoplast; GO:0071555,cell wall organization;	E2.4.1.207; xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]; K08235;	KAG7633715.1 Glycoside hydrolase family 16 [Arabidopsis suecica]	54	40	27	24
AT4G31150	no change	-0.34219387148918123	0.7103645317373393	0.9077011636073716	AT4G31150	--	GO:0003727,single-stranded RNA binding; GO:0004519,endonuclease activity; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0016891,endoribonuclease activity, producing 5'-phosphomonoesters; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	--	NP_001329217.1 endonuclease V family protein [Arabidopsis thaliana]	25	20	9	19
AT4G26900	no change	-0.21619852276839957	0.7112077075218838	0.9077011636073716	AT4G26900	--	GO:0000105,histidine biosynthetic process; GO:0000107,imidazoleglycerol-phosphate synthase activity; GO:0003824,catalytic activity; GO:0004359,glutaminase activity; GO:0006541,glutamine metabolic process; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016763,pentosyltransferase activity; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0016833,oxo-acid-lyase activity; GO:0044249,cellular biosynthetic process; GO:1901576,organic substance biosynthetic process;	HIS7; imidazole glycerol-phosphate synthase [EC:4.3.2.10]; K01663;	NP_194420.1 HIS HF [Arabidopsis thaliana]	254	154	187	109
AT3G19810	no change	0.2898054743232841	0.71121637675825	0.9077011636073716	AT3G19810	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0042254,ribosome biogenesis; GO:0042644,chloroplast nucleoid;	--	NP_001327235.1 BTB/POZ domain protein, putative (DUF177) [Arabidopsis thaliana]	83	72	78	62
AT5G66000	no change	0.5070993375512689	0.711305813870989	0.9077011636073716	AT5G66000	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_569024.1 hypothetical protein AT5G66000 [Arabidopsis thaliana]	8	13	13	1
AT3G19480	no change	0.19565417713786104	0.711739975015745	0.9077011636073716	AT3G19480	--	GO:0003954,NADH dehydrogenase activity; GO:0004617,phosphoglycerate dehydrogenase activity; GO:0005739,mitochondrion; GO:0006564,L-serine biosynthetic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009643,photosynthetic acclimation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0051287,NAD binding;	serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]; K00058;	KAG7625833.1 S-adenosyl-L-homocysteine hydrolase NAD binding domain [Arabidopsis thaliana x Arabidopsis arenosa]	51	98	42	36
AT1G55180	no change	0.3789467376697857	0.711890736420726	0.9077011636073716	AT1G55180	--	GO:0003824,catalytic activity; GO:0004630,phospholipase D activity; GO:0005509,calcium ion binding; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006970,response to osmotic stress; GO:0006995,cellular response to nitrogen starvation; GO:0009395,phospholipid catabolic process; GO:0009791,post-embryonic development; GO:0009825,multidimensional cell growth; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0045848,positive regulation of nitrogen utilization; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0048364,root development; GO:0051301,cell division; GO:0051365,cellular response to potassium ion starvation; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity;	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115;	NP_175914.1 phospholipase D alpha 4 [Arabidopsis thaliana]	14	14	18	5
AT1G78890	no change	0.11036142327692212	0.7121234544095714	0.9077011636073716	AT1G78890	--	--	--	NP_001319410.1 hypothetical protein AT1G78890 [Arabidopsis thaliana]	256	222	157	146
AT1G19630	no change	-0.3018597948795918	0.7122511684573363	0.9077011636073716	AT1G19630	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0010268,brassinosteroid homeostasis; GO:0016125,sterol metabolic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_173393.5 cytochrome P450, family 722, subfamily A, polypeptide 1 [Arabidopsis thaliana]	36	21	7	16
AT3G10405	no change	0.21960021170082375	0.7136198860620069	0.9089902953092128	AT3G10405	--	GO:0009555,pollen development;	--	NP_683545.2 vacuolar acid trehalase [Arabidopsis thaliana]	38	34	36	26
AT3G50900	no change	-0.4783141689558548	0.7142138429896674	0.9092267694359378	AT3G50900	--	--	--	NP_566940.1 hypothetical protein AT3G50900 [Arabidopsis thaliana]	12	13	7	3
AT5G19220	no change	-0.13542707942497856	0.7145200545665523	0.9092267694359378	AT5G19220	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0005524,ATP binding; GO:0005978,glycogen biosynthetic process; GO:0008152,metabolic process; GO:0008878,glucose-1-phosphate adenylyltransferase activity; GO:0009058,biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019252,starch biosynthetic process;	glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]; K00975;	NP_197423.1 ADP glucose pyrophosphorylase large subunit 1 [Arabidopsis thaliana]	386	323	206	160
AT3G18960	no change	0.4671362110765625	0.7162565224402072	0.9103069234657564	AT3G18960	B3	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus;	--	NP_188526.2 AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]	8	7	15	3
AT1G72810	no change	-0.10745869744965476	0.7163561387629188	0.9103069234657564	AT1G72810	--	GO:0003824,catalytic activity; GO:0004795,threonine synthase activity; GO:0005737,cytoplasm; GO:0006520,cellular amino acid metabolic process; GO:0008152,metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009088,threonine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016829,lyase activity; GO:0019344,cysteine biosynthetic process; GO:0030170,pyridoxal phosphate binding;	thrC; threonine synthase [EC:4.2.3.1]; K01733;	NP_565047.1 Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]	214	181	166	140
AT5G04510	no change	0.2966686078043317	0.7164419519457407	0.9103069234657564	AT5G04510	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035091,phosphatidylinositol binding; GO:0035556,intracellular signal transduction; GO:0045860,positive regulation of protein kinase activity; GO:0046777,protein autophosphorylation; GO:0070300,phosphatidic acid binding; GO:0106310,protein serine kinase activity;	PDPK1; 3-phosphoinositide dependent protein kinase-1 [EC:2.7.11.1]; K06276;	NP_974730.1 3'-phosphoinositide-dependent protein kinase 1 [Arabidopsis thaliana]	59	38	40	49
AT3G22780	no change	0.16282876326142226	0.7169756068300067	0.9105138056645128	AT3G22780	CPP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009934,regulation of meristem structural organization; GO:0010235,guard mother cell cytokinesis; GO:0010481,epidermal cell division; GO:0046872,metal ion binding; GO:0048444,floral organ morphogenesis; GO:0051302,regulation of cell division;	--	NP_566718.2 Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]	204	174	136	85
AT1G53450	no change	-0.3038006090830514	0.717620183324589	0.9105138056645128	AT1G53450	--	GO:0008150,biological_process;	--	NP_564631.2 epstein-barr nuclear antigen [Arabidopsis thaliana]	28	21	10	16
AT4G12830	no change	-0.29789026546844255	0.7177298543532927	0.9105138056645128	AT4G12830	--	GO:0003824,catalytic activity; GO:0016787,hydrolase activity;	--	NP_567394.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	39	30	23	10
AT4G37930	no change	0.23763724937459685	0.7182660633949942	0.9105138056645128	AT4G37930	--	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004372,glycine hydroxymethyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006544,glycine metabolic process; GO:0006563,L-serine metabolic process; GO:0006565,L-serine catabolic process; GO:0006730,one-carbon metabolic process; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009626,plant-type hypersensitive response; GO:0009853,photorespiration; GO:0010319,stromule; GO:0016740,transferase activity; GO:0019264,glycine biosynthetic process from serine; GO:0022626,cytosolic ribosome; GO:0030170,pyridoxal phosphate binding; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046655,folic acid metabolic process; GO:0048046,apoplast; GO:0070905,serine binding;	glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1]; K00600;	NP_195506.1 serine transhydroxymethyltransferase 1 [Arabidopsis thaliana]	2791	2586	989	791
AT4G29060	no change	0.22663770424545504	0.7185626082284681	0.9105138056645128	AT4G29060	--	GO:0003676,nucleic acid binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0043253,chloroplast ribosome; GO:0061770,translation elongation factor binding; GO:0110165,cellular anatomical entity; GO:1905538,polysome binding;	--	NP_567820.1 elongation factor Ts family protein [Arabidopsis thaliana]	1656	1533	823	624
AT4G02700	no change	-0.3046461618991749	0.7187513695795702	0.9105138056645128	AT4G02700	--	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport;	--	NP_192179.1 sulfate transporter 3;2 [Arabidopsis thaliana]	29	15	10	14
AT4G26530	no change	-0.23923497686819317	0.7192874653019765	0.9107396015888212	AT4G26530	--	GO:0003729,mRNA binding; GO:0004332,fructose-bisphosphate aldolase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0016829,lyase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process;	ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]; K01623;	NP_001031721.1 Aldolase superfamily protein [Arabidopsis thaliana]	300	329	171	107
AT5G64250	no change	0.21589208136135163	0.7199891446320243	0.9111747255537056	AT5G64250	--	GO:0005829,cytosol; GO:0009610,response to symbiotic fungus; GO:0018580,nitronate monooxygenase activity; GO:0046686,response to cadmium ion; GO:0051213,dioxygenase activity;	--	NP_568988.2 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	79	64	58	58
AT2G25940	no change	0.22484969600419724	0.7210241426543259	0.9114005938527404	AT2G25940	--	GO:0000326,protein storage vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0006624,vacuolar protein processing; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0110165,cellular anatomical entity;	LGMN; legumain [EC:3.4.22.34]; K01369;	NP_180165.1 alpha-vacuolar processing enzyme [Arabidopsis thaliana]	46	36	39	28
AT3G62140	no change	-0.26254079726165713	0.7211268391389771	0.9114005938527404	AT3G62140	--	GO:0005634,nucleus;	--	NP_191773.2 NEFA-interacting nuclear protein [Arabidopsis thaliana]	43	47	27	39
AT2G33050	no change	0.3579501343575888	0.7212419630724632	0.9114005938527404	AT2G33050	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	CAD5320203.1 unnamed protein product [Arabidopsis thaliana]	18	14	6	16
AT1G73190	no change	0.4962462065085482	0.7220027295184068	0.9119091546522806	AT1G73190	--	GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006833,water transport; GO:0006914,autophagy; GO:0009705,plant-type vacuole membrane; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042807,central vacuole; GO:0055085,transmembrane transport;	--	NP_177462.1 Aquaporin-like superfamily protein [Arabidopsis thaliana]	13	3	6	6
AT5G63640	no change	0.23689863566809777	0.7230945907299559	0.912357089097658	AT5G63640	--	GO:0005737,cytoplasm; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding; GO:0043130,ubiquitin binding; GO:0043328,protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway;	--	NP_001331835.1 ENTH/VHS/GAT family protein [Arabidopsis thaliana]	51	51	47	19
AT3G10400	no change	-0.3688425779102289	0.7238117992770147	0.912357089097658	AT3G10400	--	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005689,U12-type spliceosomal complex; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0008380,RNA splicing; GO:0032502,developmental process; GO:0046872,metal ion binding; GO:0051302,regulation of cell division; GO:1990904,ribonucleoprotein complex;	--	NP_187651.1 RNA recognition motif and CCHC-type zinc finger domains containing protein [Arabidopsis thaliana]	19	15	16	6
AT4G34135	no change	0.18679427974474905	0.7240157518896955	0.912357089097658	AT4G34135	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009813,flavonoid biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0051707,response to other organism; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_567954.1 UDP-glucosyltransferase 73B2 [Arabidopsis thaliana]	83	75	51	18
AT5G67110	no change	-0.18531538617979224	0.72436569046859	0.912357089097658	AT5G67110	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010047,fruit dehiscence; GO:0046983,protein dimerization activity;	--	NP_201512.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	47	56	40	34
AT1G09910	no change	-0.15450873751028738	0.7248628676533031	0.912357089097658	AT1G09910	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0016829,lyase activity; GO:0030246,carbohydrate binding; GO:0102210,rhamnogalacturonan endolyase activity; GO:1901575,organic substance catabolic process;	RGL4, rhiE; rhamnogalacturonan endolyase [EC:4.2.2.23]; K18195;	NP_172462.2 Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]	105	116	77	62
AT4G30490	no change	-0.23436180655430583	0.72532994806027	0.912357089097658	AT4G30490	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity;	--	NP_567847.1 AFG1-like ATPase family protein [Arabidopsis thaliana]	30	51	95	32
AT4G26630	no change	0.17648738674360587	0.7254901895619954	0.912357089097658	AT4G26630	--	GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0009651,response to salt stress; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:2000779,regulation of double-strand break repair;	--	NP_001031724.1 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]	945	764	559	410
AT5G21100	no change	0.25691941728412004	0.7262001879266885	0.912357089097658	AT5G21100	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0006952,defense response; GO:0006979,response to oxidative stress; GO:0008447,L-ascorbate oxidase activity; GO:0009536,plastid; GO:0009615,response to virus; GO:0009651,response to salt stress; GO:0016491,oxidoreductase activity; GO:0019854,L-ascorbic acid catabolic process; GO:0042542,response to hydrogen peroxide; GO:0046872,metal ion binding; GO:0050687,negative regulation of defense response to virus; GO:1901001,negative regulation of response to salt stress;	E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3]; K00423;	NP_197609.1 Plant L-ascorbate oxidase [Arabidopsis thaliana]	332	331	248	199
AT3G07400	no change	0.24213279411578448	0.7262132064971359	0.912357089097658	AT3G07400	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006629,lipid metabolic process; GO:0016020,membrane;	--	NP_187396.1 lipase class 3 family protein [Arabidopsis thaliana]	57	75	60	35
AT3G55840	no change	0.222960895106322	0.7263180242427051	0.912357089097658	AT3G55840	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0019441,tryptophan catabolic process to kynurenine; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_191143.1 Hs1pro-1 protein [Arabidopsis thaliana]	29	39	32	24
AT3G07510	no change	-0.24477968655059712	0.7268252262699969	0.912357089097658	AT3G07510	--	GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001078120.1 maternal effect embryo arrest protein [Arabidopsis thaliana]	64	52	39	22
AT1G16070	no change	-0.2959761188692571	0.7269323983978518	0.912357089097658	AT1G16070	--	GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0009620,response to fungus;	TULP1; tubby-related protein 1; K19600;	NP_173059.1 tubby like protein 8 [Arabidopsis thaliana]	22	26	11	12
AT5G43760	no change	-0.1755320760871637	0.7270177511552262	0.912357089097658	AT5G43760	--	GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009922,fatty acid elongase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_199189.1 3-ketoacyl-CoA synthase 20 [Arabidopsis thaliana]	1464	1379	981	803
AT5G15580	no change	-0.16716649393229766	0.7278003081073721	0.9127117298977538	AT5G15580	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009826,unidimensional cell growth; GO:0051513,regulation of monopolar cell growth;	--	NP_197062.1 longifolia1 [Arabidopsis thaliana]	194	196	98	98
AT2G40730	no change	0.22639794513391465	0.7283285613392178	0.9127117298977538	AT2G40730	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_181605.2 kinase family with ARM repeat domain-containing protein [Arabidopsis thaliana]	306	278	264	215
AT3G02730	no change	-0.20616205388518696	0.7283958743050369	0.9127117298977538	AT3G02730	--	GO:0004857,enzyme inhibitor activity; GO:0005829,cytosol; GO:0006109,regulation of carbohydrate metabolic process; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009642,response to light intensity; GO:0019904,protein domain specific binding; GO:0043085,positive regulation of catalytic activity; GO:0043086,negative regulation of catalytic activity; GO:0045454,cell redox homeostasis;	trxA; thioredoxin 1; K03671;	NP_186922.1 thioredoxin F-type 1 [Arabidopsis thaliana]	383	380	187	159
AT4G29210	no change	-0.11766972641534457	0.7287348664645327	0.9127117298977538	AT4G29210	--	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005886,plasma membrane; GO:0006749,glutathione metabolic process; GO:0006751,glutathione catabolic process; GO:0006805,xenobiotic metabolic process; GO:0009636,response to toxic substance; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016756,glutathione gamma-glutamylcysteinyltransferase activity; GO:0016787,hydrolase activity; GO:0036374,glutathione hydrolase activity; GO:0102953,hypoglycin A gamma-glutamyl transpeptidase activity; GO:0103068,leukotriene C4 gamma-glutamyl transferase activity;	GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase [EC:2.3.2.2 3.4.19.13 3.4.19.14]; K18592;	NP_974636.1 gamma-glutamyl transpeptidase 4 [Arabidopsis thaliana]	178	166	136	114
AT2G31141	no change	0.26111397216041077	0.7296613990843607	0.9131440676671942	AT2G31141	--	--	--	NP_001118424.2 hypothetical protein AT2G31141 [Arabidopsis thaliana]	31	21	19	17
AT1G14687	no change	-0.28083863680626386	0.729797655652288	0.9131440676671942	AT1G14687	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding;	--	NP_563956.1 homeobox protein 32 [Arabidopsis thaliana]	27	12	19	18
AT4G30370	no change	0.48298292615454486	0.7303350561529282	0.9133674289480108	AT4G30370	--	GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_194766.1 RING/U-box superfamily protein [Arabidopsis thaliana]	6	3	9	6
AT5G43170	no change	0.4929617543304978	0.7313783254593957	0.913853296043628	AT5G43170	C2H2	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009409,response to cold; GO:0042538,hyperosmotic salinity response; GO:0043565,sequence-specific DNA binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding;	--	NP_199131.1 zinc-finger protein 3 [Arabidopsis thaliana]	9	3	8	5
AT4G01575	no change	0.48443343831970864	0.7314417147508332	0.913853296043628	AT4G01575	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_567214.1 serine protease inhibitor, Kazal-type family protein [Arabidopsis thaliana]	8	6	5	6
AT2G42290	no change	-0.32675919579197554	0.7320422152711797	0.9141547781477688	AT2G42290	--	GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_181758.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	43	19	18	7
AT5G55200	no change	0.1536801287608851	0.7336743257426995	0.9157435797033696	AT5G55200	--	GO:0000166,nucleotide binding; GO:0000774,adenyl-nucleotide exchange factor activity; GO:0001405,PAM complex, Tim23 associated import motor; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006457,protein folding; GO:0009411,response to UV; GO:0030150,protein import into mitochondrial matrix; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding;	--	NP_200331.1 Co-chaperone GrpE family protein [Arabidopsis thaliana]	59	69	63	56
AT5G07240	no change	-0.330514405569172	0.7347819773755554	0.9166765355003864	AT5G07240	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016604,nuclear body;	--	NP_001332444.1 IQ-domain 24 [Arabidopsis thaliana]	27	16	8	14
AT2G17150	no change	0.21185173406644076	0.7355088662663535	0.9171337896363888	AT2G17150	Nin-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription;	--	NP_001324424.1 Plant regulator RWP-RK family protein [Arabidopsis thaliana]	57	28	46	29
AT5G23300	no change	-0.1576278634390453	0.7377268215487025	0.919191110192894	AT5G23300	--	GO:0004152,dihydroorotate dehydrogenase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006207,'de novo' pyrimidine nucleobase biosynthetic process; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0009220,pyrimidine ribonucleotide biosynthetic process; GO:0009536,plastid; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016627,oxidoreductase activity, acting on the CH-CH group of donors; GO:0044205,'de novo' UMP biosynthetic process;	DHODH, pyrD; dihydroorotate dehydrogenase [EC:1.3.5.2]; K00254;	NP_568428.1 pyrimidine d [Arabidopsis thaliana]	176	190	165	99
AT2G44260	no change	0.20483334698831257	0.7378811151764567	0.919191110192894	AT2G44260	--	GO:0016020,membrane;	--	NP_850414.1 DUF946 family protein (DUF946) [Arabidopsis thaliana]	45	40	29	21
AT4G32940	no change	0.2445035041336645	0.7390114427181665	0.9192859671790008	AT4G32940	--	GO:0000323,lytic vacuole; GO:0000326,protein storage vacuole; GO:0004175,endopeptidase activity; GO:0004197,cysteine-type endopeptidase activity; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0006624,vacuolar protein processing; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009611,response to wounding; GO:0009723,response to ethylene; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0110165,cellular anatomical entity;	LGMN; legumain [EC:3.4.22.34]; K01369;	NP_195020.1 gamma vacuolar processing enzyme [Arabidopsis thaliana]	1999	2219	1962	1344
AT5G13280	no change	-0.14009079982243922	0.7395459883581655	0.9192859671790008	AT5G13280	--	GO:0000166,nucleotide binding; GO:0004072,aspartate kinase activity; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009088,threonine biosynthetic process; GO:0009089,lysine biosynthetic process via diaminopimelate; GO:0009090,homoserine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	lysC; aspartate kinase [EC:2.7.2.4]; K00928;	NP_196832.1 aspartate kinase 1 [Arabidopsis thaliana]	77	104	66	47
AT1G54200	no change	0.27709435238239344	0.7396804777534357	0.9192859671790008	AT1G54200	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009734,auxin-activated signaling pathway; GO:0010929,positive regulation of auxin mediated signaling pathway; GO:0016020,membrane; GO:0060918,auxin transport;	--	NP_175822.1 DNA mismatch repair Msh6-like protein [Arabidopsis thaliana]	16	20	31	10
AT3G45630	no change	-0.20174319240265604	0.740043560653607	0.9192859671790008	AT3G45630	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004842,ubiquitin-protein transferase activity; GO:0009506,plasmodesma; GO:0016567,protein ubiquitination; GO:0030014,CCR4-NOT complex;	CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]; K10643;	NP_001327582.1 RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	77	94	88	58
AT5G13180	no change	0.15851269640336252	0.7403359382802099	0.9192859671790008	AT5G13180	NAC	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0010089,xylem development; GO:0010150,leaf senescence; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_196822.1 NAC domain containing protein 83 [Arabidopsis thaliana]	98	68	78	54
AT4G05460	no change	-0.205710458797034	0.7403697829096024	0.9192859671790008	AT4G05460	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination;	--	NP_567294.1 RNI-like superfamily protein [Arabidopsis thaliana]	46	31	25	32
AT4G30610	no change	0.15913273219294588	0.7419860172568873	0.9192859671790008	AT4G30610	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016787,hydrolase activity;	--	NP_194790.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	145	150	108	115
AT5G50250	no change	0.16827585878912463	0.7431249922705486	0.9192859671790008	AT5G50250	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0008266,poly(U) RNA binding; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0045087,innate immune response; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_199836.1 chloroplast RNA-binding protein 31B [Arabidopsis thaliana]	315	280	205	158
AT4G05320	no change	-0.1332795321552993	0.7433352645039998	0.9192859671790008	AT4G05320	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009751,response to salicylic acid; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding;	UBC; ubiquitin C; K08770;	XP_003627151.1 polyubiquitin isoform X1 [Medicago truncatula]	3816	3850	2943	2036
AT1G12320	no change	-0.24731982481351444	0.7434665659488859	0.9192859671790008	AT1G12320	--	GO:0003674,molecular_function;	--	NP_172696.1 ankyrin repeat/KH domain protein (DUF1442) [Arabidopsis thaliana]	23	28	28	12
AT3G54060	no change	-0.5401558426636974	0.7434949561704053	0.9192859671790008	AT3G54060	--	GO:0008150,biological_process;	--	NP_001030856.1 myosin-M heavy protein [Arabidopsis thaliana]	11	6	1	7
AT4G32460	no change	-0.1258310487258294	0.7437922379690494	0.9192859671790008	AT4G32460	--	GO:0009793,embryo development ending in seed dormancy; GO:0045489,pectin biosynthetic process;	--	NP_567894.1 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]	1827	1715	1306	918
AT2G23200	no change	-0.17003662495777583	0.7440351502043777	0.9192859671790008	AT2G23200	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation;	--	NP_179901.1 Protein kinase superfamily protein [Arabidopsis thaliana]	44	79	47	49
AT3G63300	no change	0.16441485440697523	0.7441408750266985	0.9192859671790008	AT3G63300	--	GO:0005515,protein binding; GO:0005802,trans-Golgi network; GO:0006892,post-Golgi vesicle-mediated transport; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010087,phloem or xylem histogenesis; GO:0010305,leaf vascular tissue pattern formation;	--	NP_001319826.1 FORKED 1 [Arabidopsis thaliana]	50	59	45	46
AT2G24540	no change	0.3331927382641453	0.7443392412723672	0.9192859671790008	AT2G24540	--	GO:0005515,protein binding; GO:0009585,red, far-red light phototransduction; GO:0010017,red or far-red light signaling pathway; GO:0016567,protein ubiquitination;	--	NP_565572.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	6	19	19	9
AT4G13920	no change	0.3908159034718537	0.7443662471611889	0.9192859671790008	AT4G13920	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_567412.1 receptor like protein 50 [Arabidopsis thaliana]	15	13	4	7
AT1G19230	no change	-0.2951302888478242	0.7448733107614361	0.9192859671790008	AT1G19230	--	GO:0000293,ferric-chelate reductase activity; GO:0004601,peroxidase activity; GO:0005509,calcium ion binding; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016174,NAD(P)H oxidase H2O2-forming activity; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0050664,oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor; GO:0098869,cellular oxidant detoxification;	RBOH; respiratory burst oxidase [EC:1.6.3.- 1.11.1.-]; K13447;	NP_001319042.1 Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]	31	28	9	19
AT1G68585	no change	0.48289722311986694	0.7454694443936849	0.9192859671790008	AT1G68585	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_564933.1 hypothetical protein AT1G68585 [Arabidopsis thaliana]	6	7	10	2
AT2G14890	no change	0.23903158271070524	0.7458313725057113	0.9192859671790008	AT2G14890	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_179095.1 arabinogalactan protein 9 [Arabidopsis thaliana]	1105	1100	606	472
AT3G07090	no change	0.198158989445524	0.7459582123631687	0.9192859671790008	AT3G07090	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008233,peptidase activity; GO:0070646,protein modification by small protein removal;	--	NP_001327168.1 PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]	85	127	116	62
AT3G23080	no change	-0.16543367204698356	0.7462793740942998	0.9192859671790008	AT3G23080	--	GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_001030744.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]	116	115	95	33
AT3G18690	no change	0.35698072913074697	0.7470080996022106	0.9192859671790008	AT3G18690	--	GO:0002758,innate immune response-activating signal transduction; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response;	MKS1; MAP kinase substrate 1; K20725;	NP_566616.1 MAP kinase substrate 1 [Arabidopsis thaliana]	15	9	6	13
AT1G74740	no change	-0.1441430475289911	0.7471906587324586	0.9192859671790008	AT1G74740	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	CPK; calcium-dependent protein kinase [EC:2.7.11.1]; K13412;	NP_177612.2 calcium-dependent protein kinase 30 [Arabidopsis thaliana]	92	94	46	50
AT5G07590	no change	-0.15440688062974406	0.747258844772433	0.9192859671790008	AT5G07590	--	GO:0000070,mitotic sister chromatid segregation; GO:0005515,protein binding; GO:0005815,microtubule organizing center; GO:0072686,mitotic spindle; GO:1902440,protein localization to mitotic spindle pole body; GO:1990811,MWP complex;	--	CAD5331094.1 unnamed protein product [Arabidopsis thaliana]	86	54	58	35
AT5G17600	no change	0.23205289385941977	0.7480442114251639	0.9192859671790008	AT5G17600	--	GO:0003674,molecular_function; GO:0004842,ubiquitin-protein transferase activity; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding;	--	NP_197262.1 RING/U-box superfamily protein [Arabidopsis thaliana]	28	30	22	16
AT1G03290	no change	-0.12841737716468238	0.7480603056380428	0.9192859671790008	AT1G03290	--	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0005634,nucleus; GO:0006357,regulation of transcription by RNA polymerase II;	--	NP_001184898.1 ELKS/Rab6-interacting/CAST family protein [Arabidopsis thaliana]	124	78	97	54
AT4G30790	no change	0.1007665746797608	0.7483589935713837	0.9192859671790008	AT4G30790	--	GO:0000045,autophagosome assembly; GO:0000422,autophagy of mitochondrion; GO:0001934,positive regulation of protein phosphorylation; GO:0005515,protein binding; GO:0005776,autophagosome; GO:0006914,autophagy; GO:0006996,organelle organization; GO:0009506,plasmodesma; GO:0010150,leaf senescence; GO:0015031,protein transport; GO:0019898,extrinsic component of membrane; GO:0019901,protein kinase binding; GO:0030242,autophagy of peroxisome; GO:0031410,cytoplasmic vesicle; GO:0034045,phagophore assembly site membrane; GO:0034727,piecemeal microautophagy of the nucleus; GO:0042803,protein homodimerization activity; GO:0060090,molecular adaptor activity; GO:0061709,reticulophagy; GO:1990316,Atg1/ULK1 kinase complex;	ATG11; autophagy-related protein 11; K08330;	NP_194808.1 autophagy-like protein [Arabidopsis thaliana]	141	131	129	109
AT5G51690	no change	0.25723461062708886	0.7484371420616746	0.9192859671790008	AT5G51690	--	GO:0003824,catalytic activity; GO:0004069,L-aspartate:2-oxoglutarate aminotransferase activity; GO:0006520,cellular amino acid metabolic process; GO:0008483,transaminase activity; GO:0008793,aromatic-amino-acid:2-oxoglutarate aminotransferase activity; GO:0009058,biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding;	--	NP_199982.2 1-amino-cyclopropane-1-carboxylate synthase 12 [Arabidopsis thaliana]	18	17	23	15
AT3G02380	no change	0.3869035546153796	0.7484977996064831	0.9192859671790008	AT3G02380	CO-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009658,chloroplast organization; GO:0009909,regulation of flower development; GO:0046872,metal ion binding;	--	NP_186887.1 CONSTANS-like 2 [Arabidopsis thaliana]	10	9	9	6
AT5G42240	no change	-0.14214004372401678	0.7490397671523474	0.9192859671790008	AT5G42240	--	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity;	--	NP_199039.1 serine carboxypeptidase-like 42 [Arabidopsis thaliana]	368	461	274	159
AT5G56980	no change	0.2516590651070407	0.7491548510527496	0.9192859671790008	AT5G56980	--	GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009753,response to jasmonic acid; GO:0016020,membrane; GO:0042742,defense response to bacterium;	--	NP_568845.1 cotton fiber protein [Arabidopsis thaliana]	21	27	18	15
AT2G42760	no change	-0.3227759070648961	0.7497582688788086	0.9195830333959364	AT2G42760	--	GO:0003674,molecular_function;	--	NP_181804.1 DUF1685 family protein [Arabidopsis thaliana]	20	22	8	7
AT1G17850	no change	-0.31128739467795974	0.7513896387041269	0.9208826466353314	AT1G17850	--	GO:0009507,chloroplast; GO:0009536,plastid;	--	NP_001185025.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]	22	16	6	7
AT1G78290	no change	0.36478341197470954	0.7515744009534334	0.9208826466353314	AT1G78290	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0006970,response to osmotic stress; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0106310,protein serine kinase activity;	SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1]; K14498;	NP_001077839.1 Protein kinase superfamily protein [Arabidopsis thaliana]	12	7	8	10
AT3G20830	no change	-0.4164929755234787	0.7519033947772962	0.9208826466353314	AT3G20830	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_188719.1 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Arabidopsis thaliana]	8	15	6	5
AT1G48380	no change	0.30715238400424383	0.752913026370274	0.9209643411214256	AT1G48380	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0016020,membrane; GO:0042023,DNA endoreduplication; GO:0048766,root hair initiation;	--	NP_564526.1 root hair initiation protein root hairless 1 (RHL1) [Arabidopsis thaliana]	19	14	13	8
AT4G33740	no change	-0.2185885516813446	0.7529137263350517	0.9209643411214256	AT4G33740	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001154285.1 myb-like protein X [Arabidopsis thaliana]	125	74	58	37
AT1G71480	no change	0.25715937890376317	0.7532664367489207	0.9209643411214256	AT1G71480	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane;	--	NP_177304.1 Nuclear transport factor 2 (NTF2) family protein [Arabidopsis thaliana]	22	18	35	9
AT2G47990	no change	0.1325996201095725	0.7534777165636685	0.9209643411214256	AT2G47990	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0007049,cell cycle; GO:0009553,embryo sac development; GO:0009561,megagametogenesis; GO:0045943,positive regulation of transcription by RNA polymerase I; GO:0051301,cell division; GO:0080008,Cul4-RING E3 ubiquitin ligase complex;	UTP15; U3 small nucleolar RNA-associated protein 15; K14549;	NP_182320.1 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]	249	186	264	165
AT2G26180	no change	0.2459088045998108	0.753779458764609	0.9209643411214256	AT2G26180	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0007105,cytokinesis, site selection; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0016020,membrane; GO:0016604,nuclear body; GO:0016607,nuclear speck;	--	NP_180187.1 IQ-domain 6 [Arabidopsis thaliana]	39	27	14	10
AT4G39840	no change	0.1012887824055051	0.7548008955593477	0.9213094721208313	AT4G39840	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_195694.1 cell wall integrity/stress response component-like protein [Arabidopsis thaliana]	149	141	108	101
AT2G03630	no change	-0.3432721756503021	0.7559228592370866	0.9213094721208313	AT2G03630	--	--	--	NP_001318192.1 suppressor SRP40-like protein [Arabidopsis thaliana]	9	7	13	10
AT5G61980	no change	-0.2261938863019548	0.7567006565649573	0.9213094721208313	AT5G61980	--	GO:0005096,GTPase activator activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0007010,cytoskeleton organization; GO:0030139,endocytic vesicle; GO:0035618,root hair; GO:0046872,metal ion binding; GO:0048768,root hair cell tip growth; GO:0050790,regulation of catalytic activity;	ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein; K12489;	NP_201004.2 ARF-GAP domain 1 [Arabidopsis thaliana]	196	63	70	69
AT5G08280	no change	0.232753384266438	0.7567060881481541	0.9213094721208313	AT5G08280	--	GO:0004418,hydroxymethylbilane synthase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016740,transferase activity; GO:0018160,peptidyl-pyrromethane cofactor linkage; GO:0033014,tetrapyrrole biosynthetic process; GO:0048046,apoplast; GO:1900865,chloroplast RNA modification;	hemC, HMBS; hydroxymethylbilane synthase [EC:2.5.1.61]; K01749;	NP_196445.1 hydroxymethylbilane synthase [Arabidopsis thaliana]	773	708	445	330
AT1G27370	no change	0.18072502431066972	0.7567528169530541	0.9213094721208313	AT1G27370	SBP	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010358,leaf shaping; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0090356,negative regulation of auxin metabolic process;	--	NP_001031096.2 squamosa promoter binding protein-like 10 [Arabidopsis thaliana]	112	86	72	44
AT2G46735	no change	-0.3629489162763519	0.7568064640262956	0.9213094721208313	AT2G46735	--	GO:0005515,protein binding; GO:0005575,cellular_component;	--	NP_566084.1 death domain associated protein [Arabidopsis thaliana]	19	8	15	4
AT1G01160	no change	-0.21374936977400696	0.7569168086437836	0.9213094721208313	AT1G01160	--	GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008283,cell population proliferation; GO:0045787,positive regulation of cell cycle; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0048366,leaf development;	--	NP_563619.1 GRF1-interacting factor 2 [Arabidopsis thaliana]	40	25	21	19
AT5G10520	no change	-0.32175356813974965	0.7582075914140871	0.9213094721208313	AT5G10520	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006468,protein phosphorylation; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0050832,defense response to fungus; GO:0051020,GTPase binding; GO:0071369,cellular response to ethylene stimulus; GO:0098542,defense response to other organism; GO:0106310,protein serine kinase activity;	--	AAL07235.1 putative Pto kinase interactor [Arabidopsis thaliana]	18	7	13	9
AT3G17790	no change	0.10208973258350706	0.7583166195428963	0.9213094721208313	AT3G17790	--	GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0008198,ferrous iron binding; GO:0008199,ferric iron binding; GO:0009986,cell surface; GO:0016491,oxidoreductase activity; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0030643,cellular phosphate ion homeostasis; GO:0042542,response to hydrogen peroxide; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity;	ACP5; tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2]; K14379;	NP_566587.1 purple acid phosphatase 17 [Arabidopsis thaliana]	203	177	141	82
AT4G26620	no change	-0.12405426158091348	0.7583956879780822	0.9213094721208313	AT4G26620	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_567751.1 Sucrase/ferredoxin-like family protein [Arabidopsis thaliana]	82	89	79	59
AT3G04560	no change	0.16689216921687322	0.7588486203161208	0.9213094721208313	AT3G04560	--	--	--	NP_566231.1 nucleolar/coiled-body phosphoprotein [Arabidopsis thaliana]	57	47	39	27
AT1G08550	no change	-0.10009923714040792	0.7593557273610406	0.9213094721208313	AT1G08550	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005829,cytosol; GO:0006631,fatty acid metabolic process; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010028,xanthophyll cycle; GO:0015994,chlorophyll metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0031977,thylakoid lumen; GO:0046422,violaxanthin de-epoxidase activity;	VDE, NPQ1; violaxanthin de-epoxidase [EC:1.23.5.1]; K09839;	NP_001031000.1 non-photochemical quenching 1 [Arabidopsis thaliana]	147	186	117	98
AT1G31180	no change	0.1917194805770226	0.7594803441502326	0.9213094721208313	AT1G31180	--	GO:0000287,magnesium ion binding; GO:0003862,3-isopropylmalate dehydrogenase activity; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046872,metal ion binding; GO:0051287,NAD binding;	leuB, IMDH; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]; K00052;	NP_001322636.1 isopropylmalate dehydrogenase 3 [Arabidopsis thaliana]	278	353	224	170
AT1G51550	no change	0.26584269849935005	0.7596460078142759	0.9213094721208313	AT1G51550	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0007623,circadian rhythm; GO:0009637,response to blue light; GO:0019005,SCF ubiquitin ligase complex;	--	NP_564592.1 Kelch repeat-containing F-box family protein [Arabidopsis thaliana]	26	13	18	11
AT3G10350	no change	-0.14949227408130028	0.7598842011155221	0.9213094721208313	AT3G10350	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043529,GET complex;	--	NP_187646.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	89	72	55	24
AT4G37610	no change	0.4226175717330545	0.7601173317465387	0.9213094721208313	AT4G37610	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005737,cytoplasm; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009725,response to hormone; GO:0009733,response to auxin; GO:0009751,response to salicylic acid; GO:0010468,regulation of gene expression; GO:0016567,protein ubiquitination; GO:0042542,response to hydrogen peroxide; GO:0046872,metal ion binding;	--	NP_568031.1 BTB and TAZ domain protein 5 [Arabidopsis thaliana]	4	10	9	4
AT1G08770	no change	-0.21059326633309897	0.7602160673688588	0.9213094721208313	AT1G08770	--	GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	--	NP_563826.1 prenylated RAB acceptor 1.E [Arabidopsis thaliana]	70	45	61	27
AT5G18240	no change	-0.3136205362832758	0.7605829723550922	0.9213154043996716	AT5G18240	G2-like	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010468,regulation of gene expression;	--	NP_850842.1 myb-related protein 1 [Arabidopsis thaliana]	16	14	8	7
AT1G24040	no change	0.233977684341518	0.7610943076724028	0.9214962002979378	AT1G24040	--	GO:0005515,protein binding; GO:0008080,N-acetyltransferase activity; GO:0009507,chloroplast; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity;	--	NP_001321714.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein [Arabidopsis thaliana]	41	35	25	32
AT5G47640	no change	-0.19597167745828512	0.7617798311051625	0.9215076907325775	AT5G47640	NF-YB	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009414,response to water deprivation; GO:0009536,plastid; GO:0016602,CCAAT-binding factor complex; GO:0043565,sequence-specific DNA binding; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046982,protein heterodimerization activity; GO:0048574,long-day photoperiodism, flowering;	NFYB, HAP3; nuclear transcription Y subunit beta; K08065;	NP_199575.1 nuclear factor Y, subunit B2 [Arabidopsis thaliana]	74	49	35	32
AT1G56160	no change	-1.6419207898109498	0.7623755728004271	0.9215076907325775	AT1G56160	MYB	GO:0002237,response to molecule of bacterial origin; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009866,induced systemic resistance, ethylene mediated signaling pathway; GO:0010043,response to zinc ion; GO:0010468,regulation of gene expression; GO:0019748,secondary metabolic process; GO:0046686,response to cadmium ion; GO:0051365,cellular response to potassium ion starvation; GO:0055065,metal ion homeostasis; GO:1990359,stress response to zinc ion; GO:1990532,stress response to nickel ion; GO:1990641,response to iron ion starvation;	--	NP_176012.1 myb domain protein 72 [Arabidopsis thaliana]	20	4	0	19
AT1G80180	no change	0.2555526747728809	0.7625268656612876	0.9215076907325775	AT1G80180	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0010375,stomatal complex patterning;	--	NP_565233.1 hypothetical protein AT1G80180 [Arabidopsis thaliana]	20	35	32	6
AT3G58780	no change	-0.1489925168726538	0.7627447230266933	0.9215076907325775	AT3G58780	MIKC_MADS	GO:0000976,transcription cis-regulatory region binding; GO:0000977,RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009908,flower development; GO:0010047,fruit dehiscence; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046983,protein dimerization activity; GO:0048440,carpel development; GO:0048481,plant ovule development;	--	NP_191437.1 K-box region and MADS-box transcription factor family protein [Arabidopsis thaliana]	79	69	38	34
AT3G03220	no change	-0.1483869824906474	0.7631490068629346	0.9215076907325775	AT3G03220	--	GO:0005576,extracellular region; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0071555,cell wall organization;	--	NP_566197.1 expansin A13 [Arabidopsis thaliana]	294	313	361	239
AT1G02180	no change	0.2280904705050553	0.7632763112236831	0.9215076907325775	AT1G02180	--	GO:0005575,cellular_component;	--	NP_171720.2 ferredoxin-like protein [Arabidopsis thaliana]	50	33	27	19
AT1G71100	no change	-0.17396694736493856	0.764719791910803	0.9225178124142543	AT1G71100	--	GO:0004751,ribose-5-phosphate isomerase activity; GO:0005737,cytoplasm; GO:0006098,pentose-phosphate shunt; GO:0009052,pentose-phosphate shunt, non-oxidative branch; GO:0016853,isomerase activity; GO:0030244,cellulose biosynthetic process; GO:0046109,uridine biosynthetic process;	rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]; K01807;	NP_177266.1 Ribose 5-phosphate isomerase, type A protein [Arabidopsis thaliana]	115	131	76	65
AT5G18470	no change	-0.27806564602328976	0.7648379505674171	0.9225178124142543	AT5G18470	--	GO:0009505,plant-type cell wall; GO:0030246,carbohydrate binding;	--	NP_197348.1 Curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana]	20	27	7	9
AT3G10040	no change	-0.3313210573806895	0.765655969640677	0.9230670027169696	AT3G10040	Trihelix	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010629,negative regulation of gene expression; GO:0071456,cellular response to hypoxia; GO:1900037,regulation of cellular response to hypoxia;	--	NP_187615.2 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]	37	21	15	1
AT3G15920	no change	-0.13735051454469627	0.7665652643759178	0.9233811231838414	AT3G15920	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005829,cytosol; GO:0008289,lipid binding; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0035091,phosphatidylinositol binding;	--	NP_188213.1 Phox (PX) domain-containing protein [Arabidopsis thaliana]	78	89	64	41
AT5G02290	no change	-0.14538116022050795	0.7667622518294301	0.9233811231838414	AT5G02290	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_195849.1 Protein kinase superfamily protein [Arabidopsis thaliana]	52	81	64	40
AT1G28680	no change	-0.12291609112569102	0.7670049879806053	0.9233811231838414	AT1G28680	--	GO:0009805,coumarin biosynthetic process; GO:0016410,N-acyltransferase activity; GO:0016740,transferase activity;	--	NP_174189.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	109	112	70	53
AT5G59460	no change	-0.2132369239481129	0.7688283601175129	0.9250577576513168	AT5G59460	--	GO:0000460,maturation of 5.8S rRNA; GO:0005575,cellular_component;	MPHOSPH6, MPP6; M-phase phosphoprotein 6, animal type; K12593;	NP_568908.1 scarecrow-like transcription factor 11 (SCL11) [Arabidopsis thaliana]	26	42	33	19
AT4G08460	no change	0.18120893813975236	0.7691246425108789	0.9250577576513168	AT4G08460	--	GO:0003674,molecular_function;	--	NP_001190691.1 hypothetical protein (DUF1644) [Arabidopsis thaliana]	64	57	61	39
AT1G72150	no change	-0.1217484912157314	0.7700583317840034	0.9256620138916172	AT1G72150	--	GO:0002020,protease binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0008289,lipid binding; GO:0009506,plasmodesma; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0048046,apoplast; GO:0051301,cell division; GO:1901149,salicylic acid binding;	--	NP_177360.1 PATELLIN 1 [Arabidopsis thaliana]	1880	2016	1116	902
AT3G19490	no change	-0.0995468706164484	0.7706637504317791	0.9256620138916172	AT3G19490	--	GO:0006811,ion transport; GO:0006814,sodium ion transport; GO:0006848,pyruvate transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0009941,chloroplast envelope; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane; GO:0050833,pyruvate transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1901475,pyruvate transmembrane transport;	--	NP_566638.1 sodium:hydrogen antiporter 1 [Arabidopsis thaliana]	360	282	200	146
AT4G01026	no change	-0.14279510104520377	0.7707181954563209	0.9256620138916172	AT4G01026	--	GO:0004864,protein phosphatase inhibitor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0009738,abscisic acid-activated signaling pathway; GO:0010427,abscisic acid binding; GO:0016020,membrane; GO:0038023,signaling receptor activity; GO:0042803,protein homodimerization activity; GO:0043086,negative regulation of catalytic activity; GO:0080163,regulation of protein serine/threonine phosphatase activity;	PYL; abscisic acid receptor PYR/PYL family; K14496;	NP_567208.1 PYR1-like 7 [Arabidopsis thaliana]	67	84	45	35
AT5G52110	no change	-0.2408349900345197	0.771281613634664	0.9256811942721612	AT5G52110	--	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane;	--	NP_001032060.1 chaperone (DUF2930) [Arabidopsis thaliana]	28	23	8	12
AT3G20820	no change	0.17620185991519932	0.7716460554871093	0.9256811942721612	AT3G20820	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0048046,apoplast;	--	NP_188718.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	7315	4811	4944	4383
AT1G09280	no change	0.1899436786766735	0.7718253415503051	0.9256811942721612	AT1G09280	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016787,hydrolase activity;	--	NP_563840.1 rhodanese-like domain protein [Arabidopsis thaliana]	32	36	34	18
AT4G10100	no change	0.2287057053623975	0.772429616704986	0.92596955935666	AT4G10100	--	GO:0000166,nucleotide binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006777,Mo-molybdopterin cofactor biosynthetic process; GO:0009734,auxin-activated signaling pathway; GO:0018315,molybdenum incorporation into molybdenum-molybdopterin complex; GO:0019008,molybdopterin synthase complex; GO:0030366,molybdopterin synthase activity;	MOCS2A, CNXG; molybdopterin synthase sulfur carrier subunit; K21232;	NP_001078366.1 co-factor for nitrate, reductase and xanthine dehydrogenase 7 [Arabidopsis thaliana]	16	16	29	15
AT4G14830	no change	-0.32984282938028464	0.775465137422862	0.9290386276301812	AT4G14830	--	GO:0005515,protein binding;	--	NP_193219.1 17.6 kDa class II heat shock protein [Arabidopsis thaliana]	19	11	4	10
AT3G16175	no change	-0.45256322105461777	0.7757198757226464	0.9290386276301812	AT3G16175	--	GO:0047617,acyl-CoA hydrolase activity;	--	NP_566538.1 Thioesterase superfamily protein [Arabidopsis thaliana]	10	6	4	4
AT2G42870	no change	0.3183278199345647	0.7779629760995845	0.931004109754768	AT2G42870	--	GO:0003712,transcription coregulator activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009641,shade avoidance; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032502,developmental process; GO:0042803,protein homodimerization activity; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_565988.1 phy rapidly regulated 1 [Arabidopsis thaliana]	11	17	12	4
AT1G14210	no change	0.3644165686583172	0.7780926292528061	0.931004109754768	AT1G14210	--	GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004521,endoribonuclease activity; GO:0005576,extracellular region; GO:0006401,RNA catabolic process; GO:0016070,RNA metabolic process; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0033897,ribonuclease T2 activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; GO:0099503,secretory vesicle;	--	NP_563940.1 Ribonuclease T2 family protein [Arabidopsis thaliana]	6	7	8	7
AT1G64960	no change	0.16765800295039313	0.7802143470215791	0.9330902416897732	AT1G64960	--	GO:0000070,mitotic sister chromatid segregation; GO:0000796,condensin complex; GO:0005634,nucleus; GO:0005739,mitochondrion;	--	NP_001322301.1 ARM repeat superfamily protein [Arabidopsis thaliana]	65	50	54	29
AT5G01930	no change	0.1556145757658598	0.780569400611995	0.9330902416897732	AT5G01930	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0008152,metabolic process; GO:0009845,seed germination; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016985,mannan endo-1,4-beta-mannosidase activity; GO:0071704,organic substance metabolic process;	MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]; K19355;	NP_195813.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	75	56	24	45
AT4G27690	no change	-0.15987645401774486	0.7812180779846477	0.93342723402391	AT4G27690	--	GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0006886,intracellular protein transport; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0030904,retromer complex; GO:0042147,retrograde transport, endosome to Golgi;	VPS26; vacuolar protein sorting-associated protein 26; K18466;	NP_194499.2 vacuolar protein sorting 26B [Arabidopsis thaliana]	86	71	64	51
AT2G31880	no change	-0.20635898519440232	0.7825692809462759	0.9346029188213384	AT2G31880	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0010942,positive regulation of cell death; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0031349,positive regulation of defense response; GO:0060862,negative regulation of floral organ abscission; GO:0106310,protein serine kinase activity;	--	KAG7638149.1 Leucine-rich repeat [Arabidopsis thaliana x Arabidopsis arenosa]	73	35	55	22
AT3G53530	no change	-0.17095915024609987	0.783697956333667	0.9355118662613426	AT3G53530	--	GO:0005737,cytoplasm; GO:0046872,metal ion binding;	--	NP_001030852.1 Chloroplast-targeted copper chaperone protein [Arabidopsis thaliana]	64	32	42	16
AT2G43060	no change	0.2312594175114313	0.7847274493710202	0.9363016214951928	AT2G43060	--	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity;	--	NP_181834.1 ILI1 binding bHLH 1 [Arabidopsis thaliana]	16	27	35	8
AT2G44430	no change	-0.135331556476058	0.7857516779136609	0.9366953347427576	AT2G44430	MYB_related	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0016573,histone acetylation; GO:0035267,NuA4 histone acetyltransferase complex;	--	NP_181971.1 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	77	57	37	41
AT4G10640	no change	0.358391678845404	0.7864108194014584	0.9366953347427576	AT4G10640	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_192802.2 IQ-domain 16 [Arabidopsis thaliana]	6	7	7	7
AT1G09750	no change	-0.1673391855829376	0.7864652635537752	0.9366953347427576	AT1G09750	--	GO:0000166,nucleotide binding; GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009627,systemic acquired resistance; GO:0016787,hydrolase activity; GO:0043067,regulation of programmed cell death; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_563851.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	544	497	242	170
AT1G68560	no change	0.18290128569555184	0.7865296386425433	0.9366953347427576	AT1G68560	--	GO:0000272,polysaccharide catabolic process; GO:0003824,catalytic activity; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0010411,xyloglucan metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0061634,alpha-D-xyloside xylohydrolase; GO:0071555,cell wall organization; GO:0080176,xyloglucan 1,6-alpha-xylosidase activity;	XYL1; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]; K15925;	NP_177023.1 alpha-xylosidase 1 [Arabidopsis thaliana]	4820	4333	2812	2277
AT4G01935	no change	0.18324448593915044	0.7882090080976217	0.9378102124915404	AT4G01935	--	GO:0016020,membrane;	--	NP_680559.2 insulin-induced protein [Arabidopsis thaliana]	39	44	42	11
AT1G01830	no change	0.13047214354286574	0.7884582169382588	0.9378102124915404	AT1G01830	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_001077443.1 ARM repeat superfamily protein [Arabidopsis thaliana]	204	158	122	99
AT3G26650	no change	-0.17190931414798527	0.7886015530694037	0.9378102124915404	AT3G26650	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006006,glucose metabolic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0031969,chloroplast membrane; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0051289,protein homotetramerization; GO:0097718,disordered domain specific binding; GO:0099080,supramolecular complex; GO:1901149,salicylic acid binding;	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298;	NP_566796.2 glyceraldehyde 3-phosphate dehydrogenase A subunit [Arabidopsis thaliana]	3728	2859	1635	1236
AT4G17100	no change	-0.08335102840821751	0.7890736682070116	0.9378102124915404	AT4G17100	--	GO:0004521,endoribonuclease activity; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic;	EEF2; elongation factor 2; K03234;	CAB46052.1 putative serine protease-like protein [Arabidopsis thaliana]	852	839	441	344
AT3G18870	no change	0.3594508885831935	0.7893082417119368	0.9378102124915404	AT3G18870	--	GO:0003690,double-stranded DNA binding; GO:0006353,DNA-templated transcription termination; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009658,chloroplast organization; GO:0032502,developmental process; GO:0042646,plastid nucleoid; GO:0071472,cellular response to salt stress;	--	NP_188517.1 Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	4	9	8	6
AT4G25170	no change	-0.15230306670815885	0.7900135465755374	0.9382102081356708	AT4G25170	--	GO:0003674,molecular_function;	--	NP_567716.1 Uncharacterized conserved protein (UCP012943) [Arabidopsis thaliana]	158	97	89	56
AT2G36430	no change	0.28031953072694016	0.7910790297191791	0.9386826506637234	AT2G36430	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane;	--	NP_181184.1 transmembrane protein, putative (DUF247) [Arabidopsis thaliana]	11	17	15	5
AT3G52610	no change	-0.1163058400759942	0.7914752389533882	0.9386826506637234	AT3G52610	--	GO:0003674,molecular_function;	--	NP_566970.1 GATA zinc finger protein [Arabidopsis thaliana]	111	105	86	63
AT4G23810	no change	0.19423785260394769	0.7915178657463067	0.9386826506637234	AT4G23810	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009507,chloroplast; GO:0009617,response to bacterium; GO:0009751,response to salicylic acid; GO:0010150,leaf senescence; GO:0010193,response to ozone; GO:0031347,regulation of defense response; GO:0042542,response to hydrogen peroxide; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:2000022,regulation of jasmonic acid mediated signaling pathway;	--	NP_194112.1 WRKY family transcription factor [Arabidopsis thaliana]	32	30	14	25
AT3G01930	no change	-0.10712040090921082	0.7920904704987644	0.9389241953513532	AT3G01930	--	GO:0016020,membrane;	--	NP_566157.1 Major facilitator superfamily protein [Arabidopsis thaliana]	141	85	61	63
AT5G59610	no change	-0.23031252533287816	0.793071872778869	0.939042391586728	AT5G59610	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016020,membrane; GO:0042026,protein refolding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding;	--	NP_001330548.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]	14	26	11	17
AT3G57140	no change	-0.1945360447547202	0.7931495306314884	0.939042391586728	AT3G57140	--	GO:0004806,triglyceride lipase activity; GO:0005811,lipid droplet; GO:0006629,lipid metabolic process; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity;	TGL4; TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase [EC:3.1.1.3 3.1.1.13 3.1.1.4 2.3.1.51]; K14674;	NP_191273.1 sugar-dependent 1-like protein [Arabidopsis thaliana]	32	25	16	11
AT3G07690	no change	-0.21478761539302305	0.7932971088060765	0.939042391586728	AT3G07690	--	GO:0004367,glycerol-3-phosphate dehydrogenase [NAD+] activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006072,glycerol-3-phosphate metabolic process; GO:0006116,NADH oxidation; GO:0006952,defense response; GO:0009331,glycerol-3-phosphate dehydrogenase complex; GO:0009627,systemic acquired resistance; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0046168,glycerol-3-phosphate catabolic process; GO:0047952,glycerol-3-phosphate dehydrogenase [NAD(P)+] activity; GO:0051287,NAD binding;	GPD1; glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8]; K00006;	NP_187426.3 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	33	28	16	14
AT3G60200	no change	0.2376379963207036	0.7941047348775514	0.9390774637610104	AT3G60200	--	--	--	NP_191579.1 hypothetical protein AT3G60200 [Arabidopsis thaliana]	16	13	22	9
AT1G72860	no change	0.3188936183422335	0.7943171490011086	0.9390774637610104	AT1G72860	--	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0007165,signal transduction; GO:0010942,positive regulation of cell death; GO:0016020,membrane; GO:0043531,ADP binding;	--	NP_177429.2 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	13	11	6	6
AT3G12770	no change	-0.2559000810420926	0.7950793388628572	0.9390774637610104	AT3G12770	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0080156,mitochondrial mRNA modification;	--	NP_187883.2 mitochondrial editing factor 22 [Arabidopsis thaliana]	14	28	18	7
AT5G05990	no change	0.17526947914821367	0.7951056426619516	0.9390774637610104	AT5G05990	--	GO:0003674,molecular_function; GO:0005759,mitochondrial matrix; GO:0008150,biological_process;	--	NP_196218.1 Mitochondrial glycoprotein family protein [Arabidopsis thaliana]	25	18	32	26
AT2G21940	no change	-0.16679664868729027	0.7952108719035653	0.9390774637610104	AT2G21940	--	GO:0000166,nucleotide binding; GO:0004765,shikimate kinase activity; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009423,chorismate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019632,shikimate metabolic process; GO:0046872,metal ion binding;	aroK, aroL; shikimate kinase [EC:2.7.1.71]; K00891;	NP_001077938.1 shikimate kinase 1 [Arabidopsis thaliana]	67	28	47	32
AT5G39050	no change	-0.15373982722744017	0.795540672639976	0.9390774637610104	AT5G39050	--	GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0047165,flavonol-3-O-beta-glucoside O-malonyltransferase activity; GO:0050736,O-malonyltransferase activity;	--	NP_568561.4 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	150	125	106	65
AT4G16420	no change	0.17654427515007498	0.7969891767066404	0.940351161204636	AT4G16420	--	GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003713,transcription coactivator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006338,chromatin remodeling; GO:0006357,regulation of transcription by RNA polymerase II; GO:0008270,zinc ion binding; GO:0009631,cold acclimation; GO:0009733,response to auxin; GO:0009735,response to cytokinin; GO:0016570,histone modification; GO:0016571,histone methylation; GO:0035065,regulation of histone acetylation; GO:0035066,positive regulation of histone acetylation; GO:0042127,regulation of cell population proliferation; GO:0043229,intracellular organelle; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0080090,regulation of primary metabolic process;	--	NP_974560.1 ADA2 2B [Arabidopsis thaliana]	156	180	113	94
AT5G05470	no change	-0.1250613564627958	0.7975113756060475	0.940531256217512	AT5G05470	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005850,eukaryotic translation initiation factor 2 complex; GO:0005851,eukaryotic translation initiation factor 2B complex; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0008150,biological_process; GO:0033290,eukaryotic 48S preinitiation complex; GO:0043022,ribosome binding; GO:0043614,multi-eIF complex;	EIF2S1; translation initiation factor 2 subunit 1; K03237;	NP_196166.1 eukaryotic translation initiation factor 2 alpha subunit [Arabidopsis thaliana]	226	236	199	160
AT3G13720	no change	-0.08956465585872575	0.7990189120218911	0.9416025775889296	AT3G13720	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016192,vesicle-mediated transport;	--	NP_566461.1 PRA1 (Prenylated rab acceptor) family protein [Arabidopsis thaliana]	251	294	148	140
AT2G37360	no change	0.23423759761607063	0.7993905341680376	0.9416025775889296	AT2G37360	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_181272.1 ABC-2 type transporter family protein [Arabidopsis thaliana]	17	17	15	9
AT1G75330	no change	0.17875794823835278	0.7995297328761011	0.9416025775889296	AT1G75330	--	GO:0004585,ornithine carbamoyltransferase activity; GO:0006520,cellular amino acid metabolic process; GO:0006526,arginine biosynthetic process; GO:0006591,ornithine metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016597,amino acid binding; GO:0016740,transferase activity; GO:0016743,carboxyl- or carbamoyltransferase activity; GO:0019240,citrulline biosynthetic process; GO:0042450,arginine biosynthetic process via ornithine; GO:0043231,intracellular membrane-bounded organelle;	OTC, argF, argI; ornithine carbamoyltransferase [EC:2.1.3.3]; K00611;	NP_177667.1 ornithine carbamoyltransferase [Arabidopsis thaliana]	463	450	298	187
AT5G19290	no change	0.14327773803709398	0.8010893890319032	0.9425854643780004	AT5G19290	--	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0016298,lipase activity; GO:0047372,acylglycerol lipase activity;	--	NP_197430.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	548	537	396	291
AT1G21270	no change	-0.21739936169190344	0.8011050528289254	0.9425854643780004	AT1G21270	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005509,calcium ion binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0009311,oligosaccharide metabolic process; GO:0009751,response to salicylic acid; GO:0009826,unidimensional cell growth; GO:0009992,cellular water homeostasis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding; GO:0106310,protein serine kinase activity;	--	NP_173549.1 wall-associated kinase 2 [Arabidopsis thaliana]	20	17	10	23
AT1G77240	no change	-0.20444123979960335	0.8031957221393354	0.9446086473403922	AT1G77240	--	GO:0003674,molecular_function; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0008150,biological_process; GO:0016874,ligase activity;	--	NP_177848.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]	15	25	15	21
AT5G04330	no change	0.3624368302123244	0.8038994432640602	0.944999576492856	AT5G04330	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0009809,lignin biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	CYP84A, F5H; ferulate-5-hydroxylase [EC:1.14.-.-]; K09755;	NP_196053.2 Cytochrome P450 superfamily protein [Arabidopsis thaliana]	13	3	8	3
AT4G14770	no change	0.11601077602969312	0.804946799213411	0.9457939076630336	AT4G14770	CPP	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010375,stomatal complex patterning; GO:0010440,stomatal lineage progression; GO:0046872,metal ion binding;	--	NP_193213.5 TESMIN/TSO1-like CXC 2 [Arabidopsis thaliana]	60	82	55	49
AT1G48920	no change	-0.11825474909805143	0.8054630106806833	0.9459637112055094	AT1G48920	--	GO:0000478,endonucleolytic cleavage involved in rRNA processing; GO:0001731,formation of translation preinitiation complex; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006364,rRNA processing; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0033592,RNA strand annealing activity; GO:0034057,RNA strand-exchange activity; GO:0042254,ribosome biogenesis; GO:0043024,ribosomal small subunit binding; GO:0048364,root development; GO:0048366,leaf development; GO:0048367,shoot system development; GO:0080056,petal vascular tissue pattern formation; GO:0080057,sepal vascular tissue pattern formation; GO:0097010,eukaryotic translation initiation factor 4F complex assembly;	NCL, NSR1; nucleolin; K11294;	NP_175322.1 nucleolin like 1 [Arabidopsis thaliana]	3124	3091	4064	2792
AT5G16300	no change	-0.1488016424314722	0.8058469706366433	0.945978108980746	AT5G16300	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0006891,intra-Golgi vesicle-mediated transport; GO:0009536,plastid; GO:0015031,protein transport; GO:0016020,membrane; GO:0017119,Golgi transport complex;	--	NP_197134.1 Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana]	381	343	246	200
AT4G05060	no change	0.1724680894699553	0.8070156180384255	0.946124001588329	AT4G05060	--	GO:0003674,molecular_function; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization;	--	NP_567287.1 PapD-like superfamily protein [Arabidopsis thaliana]	45	39	37	36
AT4G04220	no change	-0.28454704947503195	0.8075021841006237	0.946124001588329	AT4G04220	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_192331.2 receptor like protein 46 [Arabidopsis thaliana]	13	16	5	7
AT1G04290	no change	0.1460459026514016	0.8075397310879776	0.946124001588329	AT1G04290	--	GO:0005777,peroxisome; GO:0008150,biological_process; GO:0047617,acyl-CoA hydrolase activity;	--	NP_563705.1 Thioesterase superfamily protein [Arabidopsis thaliana]	239	178	120	109
AT3G51780	no change	0.15330319909378254	0.8076594964519659	0.946124001588329	AT3G51780	--	GO:0000774,adenyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006612,protein targeting to membrane; GO:0009409,response to cold; GO:0009651,response to salt stress; GO:0010119,regulation of stomatal movement; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0043268,positive regulation of potassium ion transport; GO:0050821,protein stabilization; GO:0051087,chaperone binding; GO:0070971,endoplasmic reticulum exit site;	--	NP_190746.2 BCL-2-associated athanogene 4 [Arabidopsis thaliana]	76	46	71	62
AT1G78910	no change	-0.36511357627648167	0.8078850046448588	0.946124001588329	AT1G78910	--	GO:0000455,enzyme-directed rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0005739,mitochondrion; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity;	--	NP_178012.2 Pseudouridine synthase family protein [Arabidopsis thaliana]	12	7	2	11
AT5G02120	no change	0.1415663540992087	0.8082017993921522	0.946124001588329	AT5G02120	--	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007623,circadian rhythm; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0010207,photosystem II assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding;	--	NP_195832.1 one helix protein [Arabidopsis thaliana]	193	138	171	120
AT3G59980	no change	0.1066447809219646	0.8099523329214083	0.9472581644478923	AT3G59980	--	GO:0000049,tRNA binding; GO:0003674,molecular_function; GO:0003723,RNA binding; GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast;	--	NP_191557.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]	87	62	57	55
AT5G13700	no change	0.22833155932524463	0.8103713847305365	0.9472581644478923	AT5G13700	--	GO:0005737,cytoplasm; GO:0006598,polyamine catabolic process; GO:0016491,oxidoreductase activity; GO:0046208,spermine catabolic process; GO:0046592,polyamine oxidase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0052894,norspermine:oxygen oxidoreductase activity; GO:0052895,N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity; GO:0052901,spermine:oxygen oxidoreductase (spermidine-forming) activity; GO:0052902,spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity; GO:0052903,N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity; GO:0052904,N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity;	MPAO, PAO1; polyamine oxidase [EC:1.5.3.14 1.5.3.16 1.5.3.-]; K13366;	NP_196874.1 polyamine oxidase 1 [Arabidopsis thaliana]	23	15	9	12
AT5G20910	no change	-0.1494230319537948	0.8109359701845852	0.9472581644478923	AT5G20910	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_197591.1 RING/U-box superfamily protein [Arabidopsis thaliana]	67	59	73	27
AT5G23680	no change	0.22587077948231915	0.8111575771575044	0.9472581644478923	AT5G23680	--	GO:0005515,protein binding;	--	NP_197757.1 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]	20	17	12	8
AT2G27500	no change	0.2068089813885088	0.811312952879076	0.9472581644478923	AT2G27500	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; GO:0071555,cell wall organization;	--	NP_565652.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]	16	24	17	11
AT1G17840	no change	0.05952659484596356	0.811854202429049	0.9472581644478923	AT1G17840	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0009611,response to wounding; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009897,external side of plasma membrane; GO:0010222,stem vascular tissue pattern formation; GO:0010345,suberin biosynthetic process; GO:0010588,cotyledon vascular tissue pattern formation; GO:0015245,fatty acid transmembrane transporter activity; GO:0015562,efflux transmembrane transporter activity; GO:0015908,fatty acid transport; GO:0016020,membrane; GO:0042335,cuticle development; GO:0042803,protein homodimerization activity; GO:0055085,transmembrane transport; GO:0080051,cutin transport; GO:0140359,ABC-type transporter activity;	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681;	NP_173226.2 white-brown complex-like protein [Arabidopsis thaliana]	1936	1905	1369	1065
AT4G02040	no change	-0.23600785565966476	0.8120679291962959	0.9472581644478923	AT4G02040	--	GO:0008150,biological_process;	--	NP_192113.1 hypothetical protein AT4G02040 [Arabidopsis thaliana]	18	13	15	12
AT1G11260	no change	0.08729614185946666	0.8126959472143743	0.9472581644478923	AT1G11260	--	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0009506,plasmodesma; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport;	--	NP_172592.1 sugar transporter 1 [Arabidopsis thaliana]	683	586	732	598
AT4G28070	no change	-0.2290980643085696	0.8128551107370598	0.9472581644478923	AT4G28070	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity;	--	NP_194536.2 AFG1-like ATPase family protein [Arabidopsis thaliana]	21	28	15	9
AT2G01350	no change	-0.10610140748286678	0.8130369289341869	0.9472581644478923	AT2G01350	--	GO:0004514,nicotinate-nucleotide diphosphorylase (carboxylating) activity; GO:0005737,cytoplasm; GO:0009435,NAD biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016763,pentosyltransferase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0034213,quinolinate catabolic process;	nadC, QPRT; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]; K00767;	NP_565259.1 quinolinate phoshoribosyltransferase [Arabidopsis thaliana]	204	172	155	97
AT3G12145	no change	-0.12764672413161549	0.8132648681016288	0.9472581644478923	AT3G12145	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016020,membrane; GO:0048471,perinuclear region of cytoplasm; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0048574,long-day photoperiodism, flowering;	--	NP_974291.4 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	5044	4442	3813	2720
AT5G10610	no change	-0.23850224023982847	0.8144762405815451	0.9480952437391694	AT5G10610	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0098542,defense response to other organism;	--	NP_196623.1 cytochrome P450, family 81, subfamily K, polypeptide 1 [Arabidopsis thaliana]	33	13	13	7
AT1G71180	no change	-0.14352743886860253	0.8147286043448186	0.9480952437391694	AT1G71180	--	GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding;	HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020;	NP_565014.1 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]	34	54	36	22
AT5G47650	no change	-0.22320387315619072	0.815470893266663	0.948525330604962	AT5G47650	--	GO:0000210,NAD+ diphosphatase activity; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0016787,hydrolase activity; GO:0035529,NADH pyrophosphatase activity; GO:0046872,metal ion binding; GO:0047631,ADP-ribose diphosphatase activity; GO:0051287,NAD binding;	--	NP_001331650.1 nudix hydrolase homolog 2 [Arabidopsis thaliana]	11	27	14	11
AT3G15660	no change	-0.1285233297415882	0.8188444976674614	0.9500556719978164	AT3G15660	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0009249,protein lipoylation; GO:0015036,disulfide oxidoreductase activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding;	--	NP_001030704.1 glutaredoxin 4 [Arabidopsis thaliana]	101	75	107	70
AT3G01990	no change	0.27004599408373053	0.818885589549199	0.9500556719978164	AT3G01990	--	GO:0005515,protein binding; GO:0016597,amino acid binding;	--	NP_001327455.1 ACT domain repeat 6 [Arabidopsis thaliana]	7	5	7	14
AT1G59870	no change	-0.1201468178402969	0.8188860400286075	0.9500556719978164	AT1G59870	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002229,defense response to oomycetes; GO:0002237,response to molecule of bacterial origin; GO:0002238,response to molecule of fungal origin; GO:0002239,response to oomycetes; GO:0002240,response to molecule of oomycetes origin; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009636,response to toxic substance; GO:0009651,response to salt stress; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009804,coumarin metabolic process; GO:0009926,auxin polar transport; GO:0009941,chloroplast envelope; GO:0010200,response to chitin; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010928,regulation of auxin mediated signaling pathway; GO:0015086,cadmium ion transmembrane transporter activity; GO:0015562,efflux transmembrane transporter activity; GO:0015691,cadmium ion transport; GO:0016020,membrane; GO:0031348,negative regulation of defense response; GO:0042344,indole glucosinolate catabolic process; GO:0042742,defense response to bacterium; GO:0046104,thymidine metabolic process; GO:0048364,root development; GO:0048825,cotyledon development; GO:0050832,defense response to fungus; GO:0052544,defense response by callose deposition in cell wall; GO:0055078,sodium ion homeostasis; GO:0055085,transmembrane transport; GO:0070574,cadmium ion transmembrane transport; GO:0071366,cellular response to indolebutyric acid stimulus; GO:0080147,root hair cell development; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity; GO:0140426,PAMP-triggered immunity signalling pathway; GO:1990748,cellular detoxification; GO:2000023,regulation of lateral root development; GO:2000071,regulation of defense response by callose deposition;	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711;	NP_176196.1 ABC-2 and Plant PDR ABC-type transporter family protein [Arabidopsis thaliana]	494	500	432	272
AT3G56260	no change	0.3455903502433735	0.8190270244356449	0.9500556719978164	AT3G56260	--	--	--	NP_001190104.1 hypothetical protein AT3G56260 [Arabidopsis thaliana]	9	6	8	2
AT4G03140	no change	0.2962314277753073	0.8195930502548822	0.9500556719978164	AT4G03140	--	GO:0005575,cellular_component; GO:0016491,oxidoreductase activity;	--	NP_567251.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	8	9	9	4
AT5G49950	no change	-0.1416693133082383	0.8196818199484953	0.9500556719978164	AT5G49950	--	GO:0005575,cellular_component; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0034338,short-chain carboxylesterase activity; GO:0044255,cellular lipid metabolic process; GO:0047372,acylglycerol lipase activity;	--	NP_199806.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	128	97	88	87
AT2G16630	no change	-0.11896905894693256	0.8197301849051609	0.9500556719978164	AT2G16630	--	GO:0003674,molecular_function; GO:0010374,stomatal complex development;	--	NP_179254.2 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]	201	158	170	81
AT4G08850	no change	-0.11150855047374895	0.8197729884900606	0.9500556719978164	AT4G08850	--	GO:0000166,nucleotide binding; GO:0001653,peptide receptor activity; GO:0002213,defense response to insect; GO:0002237,response to molecule of bacterial origin; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009695,jasmonic acid biosynthetic process; GO:0009755,hormone-mediated signaling pathway; GO:0009759,indole glucosinolate biosynthetic process; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0031349,positive regulation of defense response; GO:0042277,peptide binding; GO:0080027,response to herbivore; GO:0090406,pollen tube; GO:0106310,protein serine kinase activity; GO:1901653,cellular response to peptide;	--	NP_849538.2 Leucine-rich repeat receptor-like protein kinase family protein [Arabidopsis thaliana]	73	53	40	28
AT4G01940	no change	0.06194763412382986	0.8209831432766884	0.951025079489837	AT4G01940	--	GO:0005198,structural molecule activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0097428,protein maturation by iron-sulfur cluster transfer;	--	NP_567219.1 NFU domain protein 1 [Arabidopsis thaliana]	403	360	152	148
AT3G16380	no change	0.21612806519958916	0.8215161764059669	0.9512095855110034	AT3G16380	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0008143,poly(A) binding; GO:0008266,poly(U) RNA binding; GO:0016071,mRNA metabolic process; GO:1990904,ribonucleoprotein complex;	PABPC; polyadenylate-binding protein; K13126;	NP_188259.1 poly(A) binding protein 6 [Arabidopsis thaliana]	23	10	25	6
AT2G31830	no change	-0.17257945670531072	0.8218954447901295	0.9512159649799362	AT2G31830	--	GO:0003824,catalytic activity; GO:0004439,phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; GO:0004519,endonuclease activity; GO:0005515,protein binding; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0034485,phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046856,phosphatidylinositol dephosphorylation; GO:0046872,metal ion binding; GO:0052658,inositol-1,4,5-trisphosphate 5-phosphatase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	--	NP_180742.1 endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]	21	25	29	12
AT3G14110	no change	0.08357273337819793	0.8232668704180006	0.9514584904451648	AT3G14110	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0031408,oxylipin biosynthetic process; GO:0031969,chloroplast membrane; GO:0032991,protein-containing complex; GO:0033014,tetrapyrrole biosynthetic process;	--	NP_566478.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	124	110	88	56
AT5G23520	no change	-0.2333849339085692	0.8234548949669135	0.9514584904451648	AT5G23520	--	GO:0003674,molecular_function; GO:0005737,cytoplasm;	--	NP_001330345.1 smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]	15	15	7	14
AT2G45990	no change	0.08730550328954045	0.8238805931079828	0.9514584904451648	AT2G45990	--	GO:0000149,SNARE binding; GO:0000323,lytic vacuole; GO:0005768,endosome; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0032259,methylation; GO:0035493,SNARE complex assembly;	--	NP_566060.1 ribosomal RNA small subunit methyltransferase G [Arabidopsis thaliana]	103	95	74	57
AT2G25250	no change	-0.12683467455043385	0.824319649127346	0.9514584904451648	AT2G25250	--	GO:0005515,protein binding;	--	NP_180097.1 serine/arginine repetitive matrix-like protein [Arabidopsis thaliana]	80	78	51	34
AT2G30570	no change	0.16174968170984627	0.8248508280104032	0.9514584904451648	AT2G30570	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042549,photosystem II stabilization;	psbW; photosystem II PsbW protein; K02721;	NP_180615.1 photosystem II reaction center W [Arabidopsis thaliana]	2599	2382	1155	919
AT3G17930	no change	-0.13219404126377654	0.8248973460045635	0.9514584904451648	AT3G17930	--	GO:0009535,chloroplast thylakoid membrane; GO:0010190,cytochrome b6f complex assembly; GO:0016020,membrane;	--	NP_566593.1 transmembrane protein [Arabidopsis thaliana]	168	144	82	67
AT1G31780	no change	-0.14648057423136152	0.8250159885597963	0.9514584904451648	AT1G31780	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0006891,intra-Golgi vesicle-mediated transport; GO:0007030,Golgi organization; GO:0009860,pollen tube growth; GO:0015031,protein transport; GO:0016020,membrane; GO:0017119,Golgi transport complex;	--	NP_174458.2 oligomeric golgi complex subunit [Arabidopsis thaliana]	180	109	104	72
AT1G60220	no change	0.14218188453205816	0.8252144023028767	0.9514584904451648	AT1G60220	--	GO:0005634,nucleus; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009651,response to salt stress; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016607,nuclear speck; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0016929,deSUMOylase activity; GO:0070139,SUMO-specific endopeptidase activity;	--	NP_176228.3 UB-like protease 1D [Arabidopsis thaliana]	29	39	34	20
AT5G27270	no change	-0.1583039136966633	0.8254696844412274	0.9514584904451648	AT5G27270	--	GO:0000373,Group II intron splicing; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009570,chloroplast stroma; GO:0010239,chloroplast mRNA processing;	--	NP_001331484.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	99	62	34	47
AT2G26730	no change	-0.07193228428445053	0.8259993573253566	0.9515073059581264	AT2G26730	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_180241.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	473	389	203	153
AT3G19000	no change	0.14673429381376835	0.8270682826621848	0.9515073059581264	AT3G19000	--	GO:0003674,molecular_function; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding;	--	NP_566623.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	91	86	100	68
AT2G33850	no change	0.16247180566770503	0.8271339013464586	0.9515073059581264	AT2G33850	--	GO:0008150,biological_process; GO:0071944,cell periphery;	--	NP_565775.1 E6-like protein [Arabidopsis thaliana]	179	143	160	95
AT3G55030	no change	0.14246345884396128	0.8273279117826795	0.9515073059581264	AT3G55030	--	GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006655,phosphatidylglycerol biosynthetic process; GO:0008444,CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity; GO:0008654,phospholipid biosynthetic process; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0016780,phosphotransferase activity, for other substituted phosphate groups; GO:0030145,manganese ion binding; GO:0043231,intracellular membrane-bounded organelle; GO:0046474,glycerophospholipid biosynthetic process;	pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]; K00995;	NP_191063.1 phosphatidylglycerolphosphate synthase 2 [Arabidopsis thaliana]	50	46	35	11
AT3G09150	no change	0.1722743164048044	0.8278214022876894	0.9515073059581264	AT3G09150	--	GO:0009507,chloroplast; GO:0009536,plastid; GO:0010019,chloroplast-nucleus signaling pathway; GO:0010024,phytochromobilin biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016636,oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor; GO:0050619,phytochromobilin:ferredoxin oxidoreductase activity; GO:0050897,cobalt ion binding;	HY2; phytochromobilin:ferredoxin oxidoreductase [EC:1.3.7.4]; K08101;	NP_566344.2 phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) [Arabidopsis thaliana]	29	27	20	9
AT1G19920	no change	0.08348633546155515	0.8281750530029535	0.9515073059581264	AT1G19920	--	GO:0000103,sulfate assimilation; GO:0000166,nucleotide binding; GO:0004020,adenylylsulfate kinase activity; GO:0004781,sulfate adenylyltransferase (ATP) activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009970,cellular response to sulfate starvation; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0070814,hydrogen sulfide biosynthetic process;	PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25]; K13811;	NP_564099.1 Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]	274	239	281	172
AT3G10630	no change	-0.1480414289289076	0.828252397875305	0.9515073059581264	AT3G10630	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_566378.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	26	28	29	20
AT1G12900	no change	-0.1454299893487594	0.8290585000027638	0.9515073059581264	AT1G12900	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005576,extracellular region; GO:0006006,glucose metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:1901149,salicylic acid binding;	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298;	NP_001321059.1 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Arabidopsis thaliana]	2716	2425	1113	859
AT1G48760	no change	0.08902404884093862	0.8291939938040449	0.9515073059581264	AT1G48760	--	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006623,protein targeting to vacuole; GO:0006886,intracellular protein transport; GO:0006896,Golgi to vacuole transport; GO:0006903,vesicle targeting; GO:0007032,endosome organization; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030117,membrane coat; GO:0030123,AP-3 adaptor complex; GO:0080171,lytic vacuole organization; GO:1990019,protein storage vacuole organization;	AP3D; AP-3 complex subunit delta; K12396;	NP_001031156.1 delta-adaptin [Arabidopsis thaliana]	113	92	57	72
AT3G56060	no change	-0.13126869735301483	0.829264841584731	0.9515073059581264	AT3G56060	--	GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding;	--	NP_567032.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]	134	98	53	67
AT5G02280	no change	-0.11112493272935976	0.8296246412263585	0.9515073059581264	AT5G02280	--	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0016192,vesicle-mediated transport; GO:0030008,TRAPP complex; GO:0048193,Golgi vesicle transport;	--	NP_195848.1 SNARE-like superfamily protein [Arabidopsis thaliana]	53	52	43	52
AT5G20970	no change	-0.20200726634814004	0.830241565364099	0.9517859386719062	AT5G20970	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	HSP20; HSP20 family protein; K13993;	NP_197597.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]	21	20	15	11
AT1G68530	no change	0.16245151350095277	0.8310941435704121	0.952334351817514	AT1G68530	--	GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006633,fatty acid biosynthetic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009826,unidimensional cell growth; GO:0010025,wax biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397;	NP_177020.1 3-ketoacyl-CoA synthase 6 [Arabidopsis thaliana]	3656	2811	2356	1744
AT4G16380	no change	-0.14193099421285815	0.831990807746553	0.9529327658483246	AT4G16380	--	GO:0009506,plasmodesma; GO:0046872,metal ion binding; GO:1900150,regulation of defense response to fungus;	--	AAL38281.1 unknown protein [Arabidopsis thaliana]	66	87	67	36
AT5G47720	no change	-0.128030306681028	0.8330458999565846	0.9537120177190768	AT5G47720	--	GO:0003985,acetyl-CoA C-acetyltransferase activity; GO:0005737,cytoplasm; GO:0006635,fatty acid beta-oxidation; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0046872,metal ion binding;	ACAT, atoB; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; K00626;	NP_851150.1 Thiolase family protein [Arabidopsis thaliana]	57	47	42	23
AT1G44920	no change	-0.14226886763969482	0.8350614055170157	0.9555896029859736	AT1G44920	--	GO:0003729,mRNA binding; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0016020,membrane;	--	NP_564492.1 transmembrane protein [Arabidopsis thaliana]	49	58	37	29
AT3G11020	no change	0.2151241394583661	0.835828385435041	0.956037411654912	AT3G11020	ERF	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0010286,heat acclimation; GO:0045893,positive regulation of DNA-templated transcription;	--	NP_187713.1 DRE/CRT-binding protein 2B [Arabidopsis thaliana]	9	15	10	11
AT1G09800	no change	0.15796595284350623	0.8371628639515771	0.956300444093596	AT1G09800	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0106029,tRNA pseudouridine synthase activity;	--	NP_001322359.1 Pseudouridine synthase family protein [Arabidopsis thaliana]	44	27	14	12
AT2G43560	no change	-0.12390313582549162	0.8372133387568348	0.956300444093596	AT2G43560	--	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016853,isomerase activity; GO:0031977,thylakoid lumen;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_181884.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	123	129	45	29
AT4G16563	no change	0.8499919800662923	0.8378067151934837	0.956300444093596	AT4G16563	--	GO:0003674,molecular_function; GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity;	--	NP_567506.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	116	70	104	97
AT3G50950	no change	-0.0980009378726745	0.8381637147689188	0.956300444093596	AT3G50950	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0016020,membrane; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0043621,protein self-association; GO:0050776,regulation of immune response; GO:0050829,defense response to Gram-negative bacterium; GO:0051707,response to other organism;	--	NP_190664.1 HOPZ-ACTIVATED RESISTANCE 1 [Arabidopsis thaliana]	218	181	175	118
AT1G80780	no change	-0.1479821270919075	0.8381710934488212	0.956300444093596	AT1G80780	--	GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004535,poly(A)-specific ribonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006402,mRNA catabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0030014,CCR4-NOT complex; GO:0030015,CCR4-NOT core complex; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic;	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8; K12581;	NP_178193.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]	33	36	42	12
AT3G05220	no change	0.15821331779388537	0.8383128843901031	0.956300444093596	AT3G05220	--	GO:0009506,plasmodesma; GO:0046872,metal ion binding;	--	NP_187173.2 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]	380	415	375	298
AT1G27100	no change	-0.10014786137604936	0.8394543600769584	0.9571735422920516	AT1G27100	--	GO:0000325,plant-type vacuole;	--	NP_174030.2 Actin cross-linking protein [Arabidopsis thaliana]	158	112	112	105
AT1G78270	no change	0.251462139276601	0.8405472344421222	0.9579904664824008	AT1G78270	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_177950.1 UDP-glucosyl transferase 85A4 [Arabidopsis thaliana]	11	10	7	5
AT4G15830	no change	-0.08147477739620257	0.8438640901598456	0.9612087309097412	AT4G15830	--	GO:0000226,microtubule cytoskeleton organization; GO:0005881,cytoplasmic microtubule; GO:0008017,microtubule binding;	--	NP_567477.1 ARM repeat superfamily protein [Arabidopsis thaliana]	189	204	148	105
AT1G16000	no change	0.13174846529880835	0.8442560219970351	0.9612087309097412	AT1G16000	--	GO:0009527,plastid outer membrane; GO:0016020,membrane;	--	VYS46232.1 unnamed protein product [Arabidopsis thaliana]	56	37	66	57
AT1G79670	no change	-0.15981208300387983	0.8448592648156218	0.9612087309097412	AT1G79670	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007166,cell surface receptor signaling pathway; GO:0009620,response to fungus; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030247,polysaccharide binding; GO:0106310,protein serine kinase activity;	--	NP_178085.1 Wall-associated kinase family protein [Arabidopsis thaliana]	25	18	17	22
AT1G79870	no change	-0.08597299586167217	0.8452473037955819	0.9612087309097412	AT1G79870	--	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008465,glycerate dehydrogenase activity; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0047995,hydroxyphenylpyruvate reductase activity; GO:0051287,NAD binding; GO:1901149,salicylic acid binding;	HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]; K15919;	NP_178105.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	364	309	189	176
AT2G45310	no change	0.0939755244683651	0.8454095311461628	0.9612087309097412	AT2G45310	--	GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0032580,Golgi cisterna membrane; GO:0050378,UDP-glucuronate 4-epimerase activity;	GAE, cap1J; UDP-glucuronate 4-epimerase [EC:5.1.3.6]; K08679;	NP_182056.1 UDP-D-glucuronate 4-epimerase 4 [Arabidopsis thaliana]	110	66	38	37
AT4G36970	no change	-0.14986793732444958	0.8458126079170254	0.9612087309097412	AT4G36970	--	GO:1901700,response to oxygen-containing compound;	--	NP_568012.1 Remorin family protein [Arabidopsis thaliana]	27	45	21	19
AT3G45900	no change	0.078053403705393265	0.8460147572643697	0.9612087309097412	AT3G45900	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_190176.2 Ribonuclease P protein subunit P38-like protein [Arabidopsis thaliana]	93	76	80	56
AT5G52840	no change	-0.10263991535067872	0.8473085478996106	0.9622491095066976	AT5G52840	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0009536,plastid; GO:0009853,photorespiration; GO:0016020,membrane; GO:0022904,respiratory electron transport chain; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome;	NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5; K03949;	NP_568778.1 NADH-ubiquinone oxidoreductase-like protein [Arabidopsis thaliana]	426	434	415	354
AT1G24340	no change	-0.1059067275546477	0.8483690338871961	0.9630237249076332	AT1G24340	--	GO:0005739,mitochondrion; GO:0006744,ubiquinone biosynthetic process; GO:0043719,2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase activity; GO:0071949,FAD binding;	--	NP_173844.2 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]	73	44	57	27
AT1G64280	no change	0.11256953902832212	0.8497696870506802	0.9641836172732864	AT1G64280	--	GO:0001666,response to hypoxia; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0009408,response to heat; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009625,response to insect; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009682,induced systemic resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0010112,regulation of systemic acquired resistance; GO:0016567,protein ubiquitination; GO:0031348,negative regulation of defense response; GO:0042742,defense response to bacterium; GO:0045893,positive regulation of DNA-templated transcription; GO:0050832,defense response to fungus; GO:0080027,response to herbivore; GO:0090575,RNA polymerase II transcription regulator complex; GO:0106167,extracellular ATP signaling; GO:2000022,regulation of jasmonic acid mediated signaling pathway; GO:2000031,regulation of salicylic acid mediated signaling pathway;	NPR1; regulatory protein NPR1; K14508;	NP_176610.1 regulatory protein (NPR1) [Arabidopsis thaliana]	53	49	41	17
AT1G06500	no change	0.18863243168858723	0.8513822864304839	0.96558285158894	AT1G06500	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_001030980.1 hypothetical protein AT1G06500 [Arabidopsis thaliana]	10	33	7	14
AT1G31810	no change	-0.10016034983713772	0.8518784900268853	0.9657152592955116	AT1G31810	--	GO:0003779,actin binding; GO:0004721,phosphoprotein phosphatase activity; GO:0005819,spindle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009556,microsporogenesis; GO:0009574,preprophase band; GO:0015630,microtubule cytoskeleton; GO:0016787,hydrolase activity; GO:0051015,actin filament binding; GO:0051017,actin filament bundle assembly;	--	NP_001321171.1 Formin Homology 14 [Arabidopsis thaliana]	108	100	99	48
AT2G15910	no change	-0.0931413712021536	0.8524879521343067	0.9659758852100672	AT2G15910	--	GO:0002098,tRNA wobble uridine modification; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005829,cytosol; GO:0017183,peptidyl-diphthamide biosynthetic process from peptidyl-histidine; GO:0046872,metal ion binding;	--	NP_179191.1 CSL zinc finger domain-containing protein [Arabidopsis thaliana]	54	61	37	48
AT1G33990	no change	0.07416495330354422	0.8534680722382183	0.966656094279602	AT1G33990	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity;	--	NP_174661.1 methyl esterase 14 [Arabidopsis thaliana]	141	164	132	70
AT4G04470	no change	-0.11066962883517206	0.8545627669982078	0.967095800730432	AT4G04470	--	GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0016020,membrane; GO:0016021,integral component of membrane;	PXMP2, PMP22; peroxisomal membrane protein 2; K13347;	NP_001319865.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]	93	73	36	59
AT1G03220	no change	0.09719465723798136	0.8547205020595783	0.967095800730432	AT1G03220	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009506,plasmodesma; GO:0071456,cellular response to hypoxia; GO:0099503,secretory vesicle;	--	NP_171821.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	152	114	88	59
AT2G17500	no change	0.1107120032734752	0.8554284771245272	0.967095800730432	AT2G17500	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0010252,auxin homeostasis; GO:0010311,lateral root formation; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0040009,regulation of growth rate; GO:0055085,transmembrane transport; GO:0080162,endoplasmic reticulum to cytosol auxin transport;	--	NP_001031363.1 Auxin efflux carrier family protein [Arabidopsis thaliana]	68	92	63	38
AT5G58150	no change	-0.15987287325122423	0.8558031455676692	0.967095800730432	AT5G58150	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane;	--	NP_200623.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	24	30	9	17
AT3G46650	no change	0.24220091839424285	0.8566897618199786	0.967095800730432	AT3G46650	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009506,plasmodesma; GO:0016740,transferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_190249.4 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	8	8	7	5
AT3G49900	no change	0.09839629505782987	0.8571584358723974	0.967095800730432	AT3G49900	--	GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001190044.1 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]	124	65	111	59
AT4G19150	no change	-0.11923612709915864	0.8576778155838368	0.967095800730432	AT4G19150	--	GO:0003674,molecular_function; GO:0005515,protein binding;	--	NP_193650.2 Ankyrin repeat family protein [Arabidopsis thaliana]	55	46	32	31
AT4G24805	no change	-0.0710644857840732	0.8579046770010834	0.967095800730432	AT4G24805	--	GO:0003674,molecular_function; GO:0005797,Golgi medial cisterna; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process;	--	NP_680738.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	113	111	80	53
AT2G04890	no change	0.17747159709901794	0.8585768512554797	0.967095800730432	AT2G04890	GRAS	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding;	--	NP_178566.1 SCARECROW-like 21 [Arabidopsis thaliana]	14	10	17	8
AT3G21560	no change	0.11486593457525451	0.85946536899297	0.967095800730432	AT3G21560	--	GO:0005737,cytoplasm; GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0009718,anthocyanin-containing compound biosynthetic process; GO:0009801,cinnamic acid ester metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	BRT1; sinapate 1-glucosyltransferase [EC:2.4.1.120]; K13068;	NP_188793.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	107	105	56	68
AT5G10620	no change	-0.14496782462962088	0.8595177187411572	0.967095800730432	AT5G10620	--	GO:0003674,molecular_function; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_001318530.1 methyltransferase [Arabidopsis thaliana]	27	17	25	13
AT2G28720	no change	-0.10932729736455649	0.8599278327612617	0.967095800730432	AT2G28720	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005777,peroxisome; GO:0006334,nucleosome assembly; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2B; histone H2B; K11252;	NP_180440.1 Histone superfamily protein [Arabidopsis thaliana]	48	67	42	26
AT3G15353	no change	-0.1089629259666154	0.8600356268463032	0.967095800730432	AT3G15353	--	GO:0005507,copper ion binding; GO:0006878,cellular copper ion homeostasis; GO:0008270,zinc ion binding; GO:0046872,metal ion binding;	--	NP_001189899.1 metallothionein 3 [Arabidopsis thaliana]	2272	2108	1160	924
AT5G36220	no change	-0.16308586486822207	0.8601379128107182	0.967095800730432	AT5G36220	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_568533.2 cytochrome p450 81d1 [Arabidopsis thaliana]	35	14	13	12
AT1G51400	no change	-0.11560441153840983	0.8603581724396713	0.967095800730432	AT1G51400	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009535,chloroplast thylakoid membrane; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B; GO:0019904,protein domain specific binding;	--	NP_564589.1 Photosystem II 5 kD protein [Arabidopsis thaliana]	192	147	57	60
AT5G64960	no change	0.0829506589554585	0.8605358273269129	0.967095800730432	AT5G64960	--	GO:0000166,nucleotide binding; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004693,cyclin-dependent protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006397,mRNA processing; GO:0006468,protein phosphorylation; GO:0008353,RNA polymerase II CTD heptapeptide repeat kinase activity; GO:0009414,response to water deprivation; GO:0009615,response to virus; GO:0009908,flower development; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016604,nuclear body; GO:0016740,transferase activity; GO:0032968,positive regulation of transcription elongation by RNA polymerase II; GO:0048440,carpel development; GO:0050792,regulation of viral process; GO:0051726,regulation of cell cycle; GO:0070816,phosphorylation of RNA polymerase II C-terminal domain; GO:0106310,protein serine kinase activity;	--	NP_001078797.1 cyclin dependent kinase group C2 [Arabidopsis thaliana]	363	387	392	290
AT2G31800	no change	-0.13972752157524226	0.8606656547571879	0.967095800730432	AT2G31800	--	GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0007229,integrin-mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0046777,protein autophosphorylation;	--	NP_180739.2 Integrin-linked protein kinase family [Arabidopsis thaliana]	21	51	28	22
AT4G18372	no change	0.18452215019703644	0.8606962627325849	0.967095800730432	AT4G18372	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process; GO:0031417,NatC complex; GO:1990904,ribonucleoprotein complex;	--	NP_001328000.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]	15	14	11	6
AT3G57980	no change	0.11469593242970788	0.8617037770347962	0.9678005792381096	AT3G57980	MYB_related	GO:0003677,DNA binding; GO:0005515,protein binding;	--	NP_191357.2 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	36	40	21	23
AT1G03780	no change	-0.10716528467567876	0.862914500828529	0.9684328515440318	AT1G03780	--	GO:0000278,mitotic cell cycle; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005880,nuclear microtubule; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009941,chloroplast envelope; GO:0030295,protein kinase activator activity; GO:0032147,activation of protein kinase activity; GO:0051225,spindle assembly; GO:0051301,cell division; GO:0060236,regulation of mitotic spindle organization; GO:0072686,mitotic spindle; GO:0090307,mitotic spindle assembly;	--	NP_001184902.1 targeting protein for XKLP2 [Arabidopsis thaliana]	101	108	83	62
AT5G13520	no change	-0.04920096641341853	0.8630277828298091	0.9684328515440318	AT5G13520	--	GO:0004301,epoxide hydrolase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0016787,hydrolase activity; GO:0019370,leukotriene biosynthetic process; GO:0046872,metal ion binding;	LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]; K01254;	NP_196856.1 peptidase M1 family protein [Arabidopsis thaliana]	239	232	156	92
AT3G14067	no change	-0.0744427802697274	0.8637265640237136	0.9687898217013448	AT3G14067	--	GO:0000325,plant-type vacuole; GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0010150,leaf senescence; GO:0010223,secondary shoot formation; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0099503,secretory vesicle;	--	NP_566473.2 Subtilase family protein [Arabidopsis thaliana]	1016	1031	811	552
AT5G49945	no change	0.10622663399849765	0.8643537688313864	0.969066229813162	AT5G49945	--	GO:0005509,calcium ion binding; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0032469,endoplasmic reticulum calcium ion homeostasis;	--	NP_568716.1 hypothetical protein (DUF1682) [Arabidopsis thaliana]	97	131	98	31
AT2G43890	no change	0.14925426082991322	0.8658794851197305	0.9703493129148896	AT2G43890	--	GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity;	E3.2.1.15; polygalacturonase [EC:3.2.1.15]; K01184;	NP_181917.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	48	20	5	22
AT5G03160	no change	0.1144165983945804	0.8670079108183363	0.9709852220892344	AT5G03160	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0044794,positive regulation by host of viral process;	DNAJC3; DnaJ homolog subfamily C member 3; K09523;	NP_195936.1 DnaJ P58IPK-like protein [Arabidopsis thaliana]	243	180	95	93
AT3G18490	no change	-0.05907772938266387	0.8672099842077917	0.9709852220892344	AT3G18490	--	GO:0003677,DNA binding; GO:0004190,aspartic-type endopeptidase activity; GO:0005783,endoplasmic reticulum; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009414,response to water deprivation; GO:0009627,systemic acquired resistance; GO:0009737,response to abscisic acid; GO:0016787,hydrolase activity; GO:0070001,aspartic-type peptidase activity;	--	NP_188478.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	3755	3305	2559	1988
AT5G44780	no change	0.11831988068847644	0.8685069505918193	0.9714854956866408	AT5G44780	--	GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0009536,plastid; GO:0016554,cytidine to uridine editing; GO:0043170,macromolecule metabolic process; GO:0046983,protein dimerization activity; GO:0080156,mitochondrial mRNA modification;	--	NP_001332729.1 high molecular weight subunit-like glutenin [Arabidopsis thaliana]	40	22	23	18
AT3G25150	no change	-0.09274579114220494	0.8685454257538563	0.9714854956866408	AT3G25150	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0043229,intracellular organelle; GO:1990904,ribonucleoprotein complex;	--	NP_189151.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Arabidopsis thaliana]	501	410	368	238
AT1G76700	no change	-0.12345570194149502	0.8689913177958692	0.9714854956866408	AT1G76700	--	GO:0003674,molecular_function;	--	NP_177796.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	48	36	16	22
AT1G74590	no change	0.26428790900601484	0.8693903639972814	0.9714854956866408	AT1G74590	--	GO:0004364,glutathione transferase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006749,glutathione metabolic process; GO:0009407,toxin catabolic process; GO:0009636,response to toxic substance; GO:0016740,transferase activity;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_177598.1 glutathione S-transferase TAU 10 [Arabidopsis thaliana]	13	2	5	4
AT4G39260	no change	0.1380877477371225	0.8699397562912855	0.9714854956866408	AT4G39260	--	GO:0000380,alternative mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006397,mRNA processing; GO:0006858,extracellular transport; GO:0008380,RNA splicing; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0010043,response to zinc ion; GO:0035197,siRNA binding; GO:0035198,miRNA binding; GO:0045087,innate immune response; GO:0050658,RNA transport; GO:0050688,regulation of defense response to virus; GO:1990428,miRNA transport;	--	NP_195637.1 cold, circadian rhythm, and RNA binding 1 [Arabidopsis thaliana]	5522	5159	5112	4610
AT1G27700	no change	0.07216048220406357	0.8699471295362885	0.9714854956866408	AT1G27700	--	GO:0000149,SNARE binding; GO:0005484,SNAP receptor activity; GO:0005634,nucleus; GO:0006886,intracellular protein transport; GO:0006906,vesicle fusion; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0048193,Golgi vesicle transport; GO:0048278,vesicle docking; GO:0110165,cellular anatomical entity;	--	NP_564292.1 Syntaxin/t-SNARE family protein [Arabidopsis thaliana]	76	73	65	43
AT4G00525	no change	-0.22959483225864472	0.8707589924180139	0.971965629694669	AT4G00525	--	GO:0008150,biological_process;	--	NP_680547.2 hypothetical protein AT4G00525 [Arabidopsis thaliana]	11	13	12	3
AT1G02720	no change	-0.17771044568893046	0.8716078722510829	0.9724866439627384	AT1G02720	--	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0048354,mucilage biosynthetic process involved in seed coat development; GO:0048363,mucilage pectin metabolic process; GO:0071555,cell wall organization; GO:0071668,plant-type cell wall assembly;	--	NP_171772.1 galacturonosyltransferase 5 [Arabidopsis thaliana]	25	27	25	3
AT2G30830	no change	-0.24655975232302296	0.8729538754130264	0.9735363793119648	AT2G30830	--	GO:0008150,biological_process; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity;	--	NP_180641.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]	15	15	7	1
AT2G19480	no change	0.14699810461175922	0.8736674880046786	0.9735363793119648	AT2G19480	--	GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006281,DNA repair; GO:0006334,nucleosome assembly; GO:0009294,DNA-mediated transformation; GO:0016444,somatic cell DNA recombination; GO:0042393,histone binding; GO:0042802,identical protein binding;	--	NP_001189553.1 nucleosome assembly protein 1;2 [Arabidopsis thaliana]	996	939	934	677
AT1G80160	no change	-0.08226493771852894	0.8736963026909736	0.9735363793119648	AT1G80160	--	GO:0016829,lyase activity;	--	NP_001320354.1 Lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]	107	77	70	82
AT1G69330	no change	-0.16278902524186556	0.8747529546045979	0.974287207644946	AT1G69330	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0140096,catalytic activity, acting on a protein;	--	NP_564959.1 RING/U-box superfamily protein [Arabidopsis thaliana]	20	19	10	11
AT1G11650	no change	-0.09094989424192336	0.8754358817648686	0.9746213119385786	AT1G11650	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008143,poly(A) binding; GO:0010193,response to ozone;	--	NP_172630.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]	957	813	582	428
AT4G38700	no change	-0.17025282762787342	0.878933206887872	0.9776805831232024	AT4G38700	--	GO:0005576,extracellular region; GO:0009699,phenylpropanoid biosynthetic process; GO:0048046,apoplast;	--	NP_195582.2 Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]	20	19	11	6
AT3G14660	no change	-0.09626705057917027	0.8789521313107612	0.9776805831232024	AT3G14660	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_001326384.1 cytochrome P450, family 72, subfamily A, polypeptide 13 [Arabidopsis thaliana]	69	35	37	19
AT1G50480	no change	-0.04049980197203995	0.8800192032692621	0.9784398743207828	AT1G50480	--	GO:0000166,nucleotide binding; GO:0004329,formate-tetrahydrofolate ligase activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006730,one-carbon metabolic process; GO:0009507,chloroplast; GO:0016874,ligase activity; GO:0035999,tetrahydrofolate interconversion; GO:0048046,apoplast;	fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]; K01938;	NP_564571.1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana]	1345	996	975	681
AT2G38230	no change	0.05866073322158893	0.8804605828055777	0.9785031367861116	AT2G38230	--	GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0008615,pyridoxine biosynthetic process; GO:0009507,chloroplast; GO:0016829,lyase activity; GO:0016843,amine-lyase activity; GO:0036381,pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity; GO:0042819,vitamin B6 biosynthetic process; GO:0042823,pyridoxal phosphate biosynthetic process; GO:0046982,protein heterodimerization activity;	pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]; K06215;	NP_181358.1 pyridoxine biosynthesis 1.1 [Arabidopsis thaliana]	100	104	75	57
AT5G22880	no change	0.08299794841317087	0.8833441503348293	0.980116799425276	AT5G22880	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0009536,plastid; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2B; histone H2B; K11252;	NP_197679.1 histone B2 [Arabidopsis thaliana]	357	366	210	160
AT3G51880	no change	-0.07956582893538311	0.88356021608878	0.980116799425276	AT3G51880	--	GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006325,chromatin organization; GO:0006355,regulation of DNA-templated transcription; GO:0030527,structural constituent of chromatin;	--	NP_001078269.1 high mobility group B1 [Arabidopsis thaliana]	139	113	78	62
AT1G18650	no change	0.06749994149541383	0.8837445615589228	0.980116799425276	AT1G18650	--	GO:0001872,(1->3)-beta-D-glucan binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0030247,polysaccharide binding; GO:0070161,anchoring junction;	--	NP_564059.1 plasmodesmata callose-binding protein 3 [Arabidopsis thaliana]	89	92	42	35
AT3G18930	no change	-0.0874091808173576	0.8840485563264346	0.980116799425276	AT3G18930	--	GO:0009507,chloroplast; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031625,ubiquitin protein ligase binding; GO:0031982,vesicle; GO:0046872,metal ion binding;	--	NP_001327213.1 RING/U-box superfamily protein [Arabidopsis thaliana]	50	52	25	36
AT1G76780	no change	-0.42508502113845736	0.8845145548710311	0.980116799425276	AT1G76780	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_001321288.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]	17	0	7	2
AT3G60320	no change	-0.0764457714968767	0.8847955686187458	0.980116799425276	AT3G60320	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0010167,response to nitrate; GO:0015706,nitrate transmembrane transport; GO:0071249,cellular response to nitrate; GO:0071705,nitrogen compound transport; GO:1901698,response to nitrogen compound;	--	NP_191591.2 bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]	133	78	94	58
AT3G18910	no change	-0.11132925747255128	0.8850120054458629	0.980116799425276	AT3G18910	--	GO:0005515,protein binding;	--	NP_188521.1 EIN2 targeting protein2 [Arabidopsis thaliana]	39	27	38	15
AT5G45940	no change	0.13735059769467917	0.8856757067838934	0.980116799425276	AT5G45940	--	GO:0000210,NAD+ diphosphatase activity; GO:0003986,acetyl-CoA hydrolase activity; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005829,cytosol; GO:0006753,nucleoside phosphate metabolic process; GO:0008893,guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity; GO:0010945,CoA pyrophosphatase activity; GO:0015937,coenzyme A biosynthetic process; GO:0015938,coenzyme A catabolic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:2001294,malonyl-CoA catabolic process;	--	NP_001119380.1 nudix hydrolase homolog 11 [Arabidopsis thaliana]	8	28	14	14
AT1G47970	no change	0.08467868037215531	0.8861895051172028	0.980116799425276	AT1G47970	--	--	--	KAG7648896.1 hypothetical protein ISN45_At01g039850 [Arabidopsis thaliana x Arabidopsis arenosa]	397	347	272	223
AT2G36090	no change	-0.209239336867169	0.8867541606612253	0.980116799425276	AT2G36090	--	GO:0005515,protein binding; GO:0016020,membrane;	--	NP_181153.1 F-box family protein [Arabidopsis thaliana]	10	5	15	6
AT1G29850	no change	-0.05649502551909791	0.8869913903855835	0.980116799425276	AT1G29850	--	GO:0003677,DNA binding; GO:0003684,damaged DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006281,DNA repair; GO:0008150,biological_process; GO:0012501,programmed cell death;	PDCD5, TFAR19; programmed cell death protein 5; K06875;	NP_564336.1 double-stranded DNA-binding family protein [Arabidopsis thaliana]	94	136	103	80
AT4G39180	no change	0.07672656899643826	0.8875092198381559	0.980116799425276	AT4G39180	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006656,phosphatidylcholine biosynthetic process; GO:0015031,protein transport; GO:0016020,membrane;	--	NP_001190963.1 Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana]	90	97	44	53
AT5G06220	no change	0.12076338987173152	0.8882099149895855	0.980116799425276	AT5G06220	--	GO:0003674,molecular_function; GO:0005743,mitochondrial inner membrane; GO:0006875,cellular metal ion homeostasis; GO:0009941,chloroplast envelope;	--	NP_001190239.1 LETM1-like protein [Arabidopsis thaliana]	259	273	200	170
AT5G45480	no change	-0.19266218599160825	0.8882176944001475	0.980116799425276	AT5G45480	--	GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_199361.1 transmembrane protein, putative (DUF594) [Arabidopsis thaliana]	20	12	12	3
AT5G47430	no change	-0.08878319623087272	0.888674165771588	0.980116799425276	AT5G47430	--	GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0006397,mRNA processing; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008270,zinc ion binding; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0019538,protein metabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_001330705.1 DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]	66	95	44	65
AT2G46570	no change	0.20668183852348676	0.8887501957769592	0.980116799425276	AT2G46570	--	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0046274,lignin catabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0052716,hydroquinone:oxygen oxidoreductase activity;	E1.10.3.2; laccase [EC:1.10.3.2]; K05909;	NP_182180.1 laccase 6 [Arabidopsis thaliana]	19	7	11	0
AT3G52060	no change	0.07228086833811886	0.8891835676849267	0.980116799425276	AT3G52060	--	GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_190774.1 core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	329	266	239	172
AT4G28760	no change	-0.04789262464892241	0.8893408848334302	0.980116799425276	AT4G28760	--	GO:0003674,molecular_function;	--	NP_567819.1 methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Arabidopsis thaliana]	137	126	117	77
AT5G61190	no change	-0.0886697612153231	0.889731136042034	0.980116799425276	AT5G61190	--	GO:0003676,nucleic acid binding; GO:0004519,endonuclease activity; GO:0004540,ribonuclease activity; GO:0005777,peroxisome; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0035194,post-transcriptional gene silencing by RNA; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1903231,mRNA base-pairing post-transcriptional repressor activity;	--	NP_001331003.1 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein [Arabidopsis thaliana]	60	85	60	51
AT2G37190	no change	0.10023480621137892	0.8900368533512623	0.980116799425276	AT2G37190	--	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0008270,zinc ion binding; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L12e, RPL12; large subunit ribosomal protein L12e; K02870;	NP_181256.1 Ribosomal protein L11 family protein [Arabidopsis thaliana]	983	846	1310	1019
AT1G65240	no change	-0.111511549983911	0.8903188675315608	0.980116799425276	AT1G65240	--	GO:0004190,aspartic-type endopeptidase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009860,pollen tube growth; GO:0010183,pollen tube guidance; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030163,protein catabolic process; GO:0090406,pollen tube;	--	NP_176703.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]	50	55	15	19
AT5G03490	no change	0.07438972169896907	0.8903850845859481	0.980116799425276	AT5G03490	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity;	--	NP_195969.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	63	40	51	27
AT2G41620	no change	0.09681804308168296	0.8919424855769679	0.981406669171372	AT2G41620	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005730,nucleolus; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0016020,membrane; GO:0016973,poly(A)+ mRNA export from nucleus; GO:0017056,structural constituent of nuclear pore; GO:0051028,mRNA transport;	NUP93, NIC96; nuclear pore complex protein Nup93; K14309;	NP_565951.1 Nucleoporin interacting component (Nup93/Nic96-like) family protein [Arabidopsis thaliana]	328	241	212	208
AT1G30590	no change	-0.05408765881468147	0.8929685803897245	0.9816890282598328	AT1G30590	--	GO:0001042,RNA polymerase I core binding; GO:0001181,RNA polymerase I general transcription initiation factor activity; GO:0003743,translation initiation factor activity; GO:0005634,nucleus; GO:0006361,transcription initiation at RNA polymerase I promoter; GO:0006413,translational initiation;	--	NP_001320918.1 RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]	74	94	129	70
AT2G36360	no change	0.0758153647371902	0.8934931634231292	0.9816890282598328	AT2G36360	--	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005515,protein binding; GO:0005802,trans-Golgi network; GO:0006886,intracellular protein transport;	--	NP_001031493.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]	44	52	38	24
AT3G07390	no change	0.0387170795088192	0.8934960403182343	0.9816890282598328	AT3G07390	--	--	--	NP_566306.3 auxin-induced in root cultures-like protein [Arabidopsis thaliana]	952	857	373	269
AT4G17560	no change	-0.089708036418223	0.893742034765435	0.9816890282598328	AT4G17560	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L19, MRPL19, rplS; large subunit ribosomal protein L19; K02884;	NP_567531.1 Ribosomal protein L19 family protein [Arabidopsis thaliana]	167	154	49	61
AT5G47210	no change	-0.03899347013938836	0.8952152991424353	0.9824681267128016	AT5G47210	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0009536,plastid; GO:0048471,perinuclear region of cytoplasm;	--	NP_199532.1 Hyaluronan / mRNA binding family [Arabidopsis thaliana]	1749	1813	2135	1549
AT5G23575	no change	-0.06708786062961636	0.8952234129064781	0.9824681267128016	AT5G23575	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_680213.1 Transmembrane CLPTM1 family protein [Arabidopsis thaliana]	891	811	685	589
AT2G24230	no change	-0.08098008927631106	0.8975422235882642	0.9835943899066474	AT2G24230	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_850049.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	117	87	34	29
AT3G45600	no change	0.07203731934216862	0.8979547266988672	0.9835943899066474	AT3G45600	--	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_190146.1 tetraspanin3 [Arabidopsis thaliana]	626	465	470	353
AT5G42090	no change	-0.05486370217588643	0.8987110104883006	0.9835943899066474	AT5G42090	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_199024.1 Lung seven transmembrane receptor family protein [Arabidopsis thaliana]	1032	895	624	576
AT3G19230	no change	-0.2884322726131714	0.8991749360197827	0.9835943899066474	AT3G19230	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process;	--	NP_188554.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]	22	9	18	0
AT1G79900	no change	0.09370246884322242	0.8994232360498349	0.9835943899066474	AT1G79900	--	GO:0000064,L-ornithine transmembrane transporter activity; GO:0005290,L-histidine transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006561,proline biosynthetic process; GO:0006972,hyperosmotic response; GO:0015189,L-lysine transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0061459,L-arginine transmembrane transporter activity; GO:0089709,L-histidine transmembrane transport; GO:1903352,L-ornithine transmembrane transport; GO:1903401,L-lysine transmembrane transport; GO:1903826,L-arginine transmembrane transport;	SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29; K15109;	NP_178108.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	53	61	49	35
AT3G63390	no change	-0.1755474711002023	0.9005577678631228	0.9835943899066474	AT3G63390	--	GO:0009536,plastid;	--	NP_567146.1 hypothetical protein AT3G63390 [Arabidopsis thaliana]	8	8	14	8
AT3G09050	no change	0.0923363231005041	0.9009576784765496	0.9835943899066474	AT3G09050	--	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane;	--	NP_187517.1 8-amino-7-oxononanoate synthase [Arabidopsis thaliana]	27	25	17	21
AT4G28050	no change	-0.05450547496965718	0.9015407466126792	0.9835943899066474	AT4G28050	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_194534.1 tetraspanin7 [Arabidopsis thaliana]	462	415	329	195
AT5G15330	no change	-0.13930171644003408	0.9020070444413152	0.9835943899066474	AT5G15330	--	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006950,response to stress; GO:0016036,cellular response to phosphate starvation; GO:0055062,phosphate ion homeostasis; GO:0070417,cellular response to cold;	--	NP_001330175.1 SPX domain-containing protein 4 [Arabidopsis thaliana]	19	16	6	19
AT4G04870	no change	0.09420276562086728	0.9023051142109532	0.9835943899066474	AT4G04870	--	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006629,lipid metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0008808,cardiolipin synthase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016780,phosphotransferase activity, for other substituted phosphate groups; GO:0030145,manganese ion binding; GO:0032049,cardiolipin biosynthetic process; GO:0043337,cardiolipin synthase (CMP-forming); GO:0046474,glycerophospholipid biosynthetic process;	CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]; K08744;	NP_567273.1 cardiolipin synthase [Arabidopsis thaliana]	79	66	44	58
AT3G28920	no change	-0.05697637271463662	0.9025009385315692	0.9835943899066474	AT3G28920	ZF-HD	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0019760,glucosinolate metabolic process; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding;	--	NP_189534.1 homeobox protein 34 [Arabidopsis thaliana]	91	69	95	66
AT5G62180	no change	0.10597556402955276	0.9026419955710536	0.9835943899066474	AT5G62180	--	GO:0016787,hydrolase activity; GO:0043722,4-hydroxyphenylacetate decarboxylase activity;	--	NP_201024.1 carboxyesterase 20 [Arabidopsis thaliana]	21	15	21	9
AT2G03750	no change	-0.07136141912377525	0.9031529839859772	0.9835943899066474	AT2G03750	--	GO:0005737,cytoplasm; GO:0008146,sulfotransferase activity; GO:0016740,transferase activity; GO:0051923,sulfation;	--	NP_565305.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	131	83	66	31
AT1G78980	no change	-0.3286264186662038	0.903220366240712	0.9835943899066474	AT1G78980	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018108,peptidyl-tyrosine phosphorylation;	--	NP_178019.2 STRUBBELIG-receptor family 5 [Arabidopsis thaliana]	5	15	7	0
AT1G49660	no change	0.064547280400296	0.9036239704444572	0.9835943899066474	AT1G49660	--	GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity;	--	NP_175389.1 carboxyesterase 5 [Arabidopsis thaliana]	83	46	37	31
AT2G39740	no change	-0.06194062179762749	0.903730931234287	0.9835943899066474	AT2G39740	--	GO:0000932,P-body; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0010587,miRNA catabolic process; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0031123,RNA 3'-end processing; GO:0050265,RNA uridylyltransferase activity; GO:0071076,RNA 3' uridylation;	--	NP_001318386.1 Nucleotidyltransferase family protein [Arabidopsis thaliana]	66	72	38	34
AT5G57240	no change	0.04432982833012922	0.904124460999716	0.9835943899066474	AT5G57240	--	GO:0005829,cytosol; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0015248,sterol transporter activity; GO:0015918,sterol transport; GO:0016020,membrane; GO:0032934,sterol binding; GO:0043231,intracellular membrane-bounded organelle;	--	NP_001032088.1 OSBP(oxysterol binding protein)-related protein 4C [Arabidopsis thaliana]	114	108	86	62
AT1G55670	no change	-0.06572401828610985	0.9044191977202646	0.9835943899066474	AT1G55670	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009780,photosynthetic NADP+ reduction; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0030093,chloroplast photosystem I; GO:0031969,chloroplast membrane; GO:0042550,photosystem I stabilization; GO:0050821,protein stabilization;	psaG; photosystem I subunit V; K08905;	NP_175963.1 photosystem I subunit G [Arabidopsis thaliana]	214	178	107	76
AT3G20670	no change	0.07805096515615872	0.904650593677766	0.9835943899066474	AT3G20670	--	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005829,cytosol; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity;	H2A; histone H2A; K11251;	NP_188703.1 histone H2A 13 [Arabidopsis thaliana]	543	611	296	219
AT1G74910	no change	-0.05979226371609414	0.9051622664674728	0.9835943899066474	AT1G74910	--	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0009058,biosynthetic process; GO:0016779,nucleotidyltransferase activity; GO:0046686,response to cadmium ion; GO:2000082,regulation of L-ascorbic acid biosynthetic process;	GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K00966;	NP_177629.1 ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana]	290	285	225	119
AT1G03100	no change	0.13821593854723524	0.9051983994642184	0.9835943899066474	AT1G03100	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process;	--	NP_171809.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]	7	18	12	4
AT1G19680	no change	0.08088897313583043	0.9059310563397354	0.9835943899066474	AT1G19680	--	GO:0003674,molecular_function;	--	NP_173398.2 RING/U-box superfamily protein [Arabidopsis thaliana]	34	33	19	26
AT3G02690	no change	0.05361535444116416	0.9061028261732722	0.9835943899066474	AT3G02690	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane;	--	NP_566180.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	69	59	58	49
AT3G14590	no change	0.0948682196306887	0.9061230226021086	0.9835943899066474	AT3G14590	--	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane;	--	NP_001189894.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	25	20	19	13
AT2G41500	no change	-0.06963050200279497	0.9063212539690036	0.9835943899066474	AT2G41500	--	GO:0000398,mRNA splicing, via spliceosome; GO:0001709,cell fate determination; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0007267,cell-cell signaling; GO:0008380,RNA splicing; GO:0009553,embryo sac development; GO:0009560,embryo sac egg cell differentiation; GO:0016607,nuclear speck; GO:0017070,U6 snRNA binding; GO:0030621,U4 snRNA binding; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0110165,cellular anatomical entity;	PRPF4, PRP4; U4/U6 small nuclear ribonucleoprotein PRP4; K12662;	AAP40506.1 putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana]	134	94	70	72
AT1G19780	no change	0.12926546606972877	0.9069777661012876	0.9835943899066474	AT1G19780	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009860,pollen tube growth; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_173408.2 cyclic nucleotide gated channel 8 [Arabidopsis thaliana]	4	11	19	7
AT1G54370	no change	0.06884303538180703	0.9073651598404971	0.9835943899066474	AT1G54370	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006814,sodium ion transport; GO:0006885,regulation of pH; GO:0010008,endosome membrane; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0015385,sodium:proton antiporter activity; GO:0015386,potassium:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0032580,Golgi cisterna membrane; GO:0051453,regulation of intracellular pH; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0098719,sodium ion import across plasma membrane; GO:1902600,proton transmembrane transport;	--	NP_175839.2 sodium hydrogen exchanger 5 [Arabidopsis thaliana]	120	142	79	79
AT4G14880	no change	0.09383245078708669	0.9076558957981964	0.9835943899066474	AT4G14880	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004124,cysteine synthase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006535,cysteine biosynthetic process from serine; GO:0007568,aging; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009567,double fertilization forming a zygote and endosperm; GO:0009570,chloroplast stroma; GO:0009860,pollen tube growth; GO:0016740,transferase activity; GO:0019344,cysteine biosynthetic process; GO:0046686,response to cadmium ion; GO:0048046,apoplast;	cysK; cysteine synthase [EC:2.5.1.47]; K01738;	NP_001190732.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1 [Arabidopsis thaliana]	994	793	346	317
AT5G07000	no change	-0.1085690234084744	0.9080365825594634	0.9835943899066474	AT5G07000	--	GO:0005737,cytoplasm; GO:0008146,sulfotransferase activity; GO:0016740,transferase activity; GO:0051923,sulfation;	ST2A, SOT15; hydroxyjasmonate sulfotransferase [EC:2.8.2.39]; K22312;	NP_196317.2 sulfotransferase 2B [Arabidopsis thaliana]	251	161	79	174
AT2G45720	no change	-0.06235197262026659	0.9086112902800992	0.9835943899066474	AT2G45720	--	GO:0005515,protein binding;	--	NP_001031543.1 ARM repeat superfamily protein [Arabidopsis thaliana]	71	71	71	45
AT5G04820	no change	0.0956515161288234	0.9086755779355268	0.9835943899066474	AT5G04820	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_196102.1 ovate family protein 13 [Arabidopsis thaliana]	40	44	28	26
AT3G60080	no change	-0.0877566860806489	0.9090767558264944	0.9835943899066474	AT3G60080	--	GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_191567.1 RING/U-box superfamily protein [Arabidopsis thaliana]	27	36	32	17
AT1G19540	no change	0.09736504545879932	0.9092148176796117	0.9835943899066474	AT1G19540	--	GO:0016491,oxidoreductase activity;	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050;	NP_001320975.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	20	24	24	8
AT5G50920	no change	0.05049379747915594	0.909816092835006	0.9835943899066474	AT5G50920	--	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004176,ATP-dependent peptidase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0015031,protein transport; GO:0016020,membrane; GO:0016887,ATP hydrolysis activity; GO:0031897,Tic complex; GO:0031969,chloroplast membrane; GO:0045036,protein targeting to chloroplast; GO:0045037,protein import into chloroplast stroma;	--	NP_568746.1 CLPC homologue 1 [Arabidopsis thaliana]	6615	6000	3113	2592
AT2G47650	no change	0.0654903198657042	0.9101085167203912	0.9835943899066474	AT2G47650	--	GO:0000138,Golgi trans cisterna; GO:0000325,plant-type vacuole; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0032580,Golgi cisterna membrane; GO:0033320,UDP-D-xylose biosynthetic process; GO:0042732,D-xylose metabolic process; GO:0048040,UDP-glucuronate decarboxylase activity; GO:0070403,NAD+ binding;	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]; K08678;	NP_182287.1 UDP-xylose synthase 4 [Arabidopsis thaliana]	579	468	294	268
AT5G06870	no change	0.05594859119334305	0.910369463186946	0.9835943899066474	AT5G06870	--	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043086,negative regulation of catalytic activity; GO:0090353,polygalacturonase inhibitor activity;	--	NP_196305.1 polygalacturonase inhibiting protein 2 [Arabidopsis thaliana]	464	446	308	262
AT1G54360	no change	-0.06150792537879557	0.9105494627190812	0.9835943899066474	AT1G54360	--	GO:0000124,SAGA complex; GO:0005634,nucleus; GO:0005669,transcription factor TFIID complex; GO:0006367,transcription initiation at RNA polymerase II promoter; GO:0016251,RNA polymerase II general transcription initiation factor activity; GO:0046695,SLIK (SAGA-like) complex; GO:0046982,protein heterodimerization activity;	TAF6; transcription initiation factor TFIID subunit 6; K03131;	AAS17939.1 TATA binding protein associated factor 6b isoform 2, partial [Arabidopsis thaliana]	65	61	35	37
AT1G30400	no change	-0.05926957357333684	0.9109979199919312	0.983661309452467	AT1G30400	--	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0015446,ATPase-coupled arsenite transmembrane transporter activity; GO:0015700,arsenite transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0044604,ABC-type phytochelatin transporter activity; GO:0046685,response to arsenic-containing substance; GO:0055085,transmembrane transport; GO:0061687,detoxification of inorganic compound; GO:0071722,detoxification of arsenic-containing substance; GO:0071994,phytochelatin transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1902417,(+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity; GO:1902418,(+)-abscisic acid D-glucopyranosyl ester transmembrane transport;	--	NP_001031116.1 multidrug resistance-associated protein 1 [Arabidopsis thaliana]	688	575	467	303
AT3G60110	no change	0.10617839026753906	0.9125643317138028	0.9840653804980564	AT3G60110	MYB_related	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0016573,histone acetylation; GO:0035267,NuA4 histone acetyltransferase complex;	--	NP_567092.4 DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	14	22	12	9
AT3G13672	no change	0.1429558136779896	0.91292697102289	0.9840653804980564	AT3G13672	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0007275,multicellular organism development; GO:0016567,protein ubiquitination; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:1902584,positive regulation of response to water deprivation; GO:2000785,regulation of autophagosome assembly;	SIAH1; E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]; K04506;	NP_187978.1 TRAF-like superfamily protein [Arabidopsis thaliana]	6	8	7	6
AT2G30860	no change	-0.04348225565273012	0.9132744463584608	0.9840653804980564	AT2G30860	--	GO:0000325,plant-type vacuole; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005507,copper ion binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009636,response to toxic substance; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0042221,response to chemical; GO:0043295,glutathione binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding;	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799;	NP_180643.1 glutathione S-transferase PHI 9 [Arabidopsis thaliana]	914	1050	980	794
AT2G32800	no change	-0.11308628725082848	0.913378406971464	0.9840653804980564	AT2G32800	--	GO:0000166,nucleotide binding; GO:0002229,defense response to oomycetes; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042742,defense response to bacterium; GO:0071395,cellular response to jasmonic acid stimulus; GO:0071446,cellular response to salicylic acid stimulus; GO:0106310,protein serine kinase activity;	--	NP_180839.2 protein kinase family protein [Arabidopsis thaliana]	22	16	16	11
AT4G03410	no change	-0.07932394888196992	0.9145753731766132	0.9840653804980564	AT4G03410	--	GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016021,integral component of membrane;	MPV17; protein Mpv17; K13348;	NP_192250.2 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]	25	49	42	22
AT5G26990	no change	0.07883553815898559	0.9147866205587988	0.9840653804980564	AT5G26990	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_198051.1 Drought-responsive family protein [Arabidopsis thaliana]	36	31	21	12
AT4G17090	no change	-0.04632523969791791	0.9150789097090952	0.9840653804980564	AT4G17090	--	GO:0000024,maltose biosynthetic process; GO:0000272,polysaccharide catabolic process; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0008152,metabolic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016161,beta-amylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102229,amylopectin maltohydrolase activity;	E3.2.1.2; beta-amylase [EC:3.2.1.2]; K01177;	NP_567523.1 chloroplast beta-amylase [Arabidopsis thaliana]	856	873	673	556
AT4G26490	no change	-0.2123951697552968	0.9157622577750416	0.9840653804980564	AT4G26490	--	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_194379.3 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]	8	13	2	7
AT2G25270	no change	0.04387465274989921	0.9160982716965164	0.9840653804980564	AT2G25270	--	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane;	--	NP_180099.2 transmembrane protein [Arabidopsis thaliana]	93	87	59	63
AT1G65970	no change	0.0549513465353435	0.9161752255470365	0.9840653804980564	AT1G65970	--	GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0008379,thioredoxin peroxidase activity; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0034599,cellular response to oxidative stress; GO:0042744,hydrogen peroxide catabolic process; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification;	PRXII; glutaredoxin-dependent peroxiredoxin [EC:1.11.1.25]; K24140;	NP_176772.1 thioredoxin-dependent peroxidase 2 [Arabidopsis thaliana]	61	55	37	29
AT3G10020	no change	0.06921771330513593	0.9163024206707696	0.9840653804980564	AT3G10020	--	GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009061,anaerobic respiration; GO:0071456,cellular response to hypoxia;	--	NP_566365.1 plant/protein [Arabidopsis thaliana]	414	295	281	202
AT5G19140	no change	-0.03793278928165655	0.916377196923502	0.9840653804980564	AT5G19140	--	GO:0005886,plasma membrane; GO:0009536,plastid;	--	NP_001031900.1 aluminum induced protein with YGL and LRDR motifs [Arabidopsis thaliana]	932	943	573	420
AT1G07260	no change	0.15767830157009757	0.9163988022712743	0.9840653804980564	AT1G07260	--	GO:0004134,4-alpha-glucanotransferase activity; GO:0008194,UDP-glycosyltransferase activity; GO:0010113,negative regulation of systemic acquired resistance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity;	--	NP_172206.1 UDP-glucosyl transferase 71C3 [Arabidopsis thaliana]	20	9	2	4
AT1G23730	no change	0.04134815818680071	0.9176270082946564	0.9841223638527888	AT1G23730	--	GO:0004089,carbonate dehydratase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0015976,carbon utilization; GO:0016829,lyase activity;	cynT, can; carbonic anhydrase [EC:4.2.1.1]; K01673;	NP_001321762.1 beta carbonic anhydrase 3 [Arabidopsis thaliana]	111	129	58	66
AT5G63300	no change	0.13220987844726295	0.9186870575601632	0.9841223638527888	AT5G63300	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex;	--	NP_201135.2 Ribosomal protein S21 family protein [Arabidopsis thaliana]	8	10	4	8
AT2G46230	no change	0.08771514820985615	0.9187628985282986	0.9841223638527888	AT2G46230	--	GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome;	UTP24, FCF1; U3 small nucleolar RNA-associated protein 24; K14566;	NP_566068.1 PIN domain-like family protein [Arabidopsis thaliana]	197	187	208	150
AT4G13500	no change	-0.22462164506602988	0.9188173410840668	0.9841223638527888	AT4G13500	--	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0016020,membrane;	--	NP_193086.1 transmembrane protein [Arabidopsis thaliana]	7	13	10	1
AT5G43745	no change	0.08268167519546665	0.9193218417254836	0.9841223638527888	AT5G43745	--	GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0042170,plastid membrane;	--	NP_568628.1 ion channel POLLUX-like protein, putative (DUF1012) [Arabidopsis thaliana]	86	101	59	72
AT3G51470	no change	0.05126557537211695	0.919333181331624	0.9841223638527888	AT3G51470	--	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0006470,protein dephosphorylation; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0043169,cation binding; GO:0046872,metal ion binding;	--	NP_001327475.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]	74	48	42	36
AT2G05310	no change	0.14169073022281609	0.9196327768258964	0.9841223638527888	AT2G05310	--	GO:0005739,mitochondrion; GO:0016020,membrane;	--	NP_565324.1 transmembrane protein [Arabidopsis thaliana]	5	11	5	5
AT1G69380	no change	-0.06317826947400018	0.9200199567792424	0.9841223638527888	AT1G69380	--	GO:0005739,mitochondrion; GO:0007049,cell cycle; GO:0010082,regulation of root meristem growth; GO:0010822,positive regulation of mitochondrion organization; GO:0016020,membrane; GO:0030308,negative regulation of cell growth; GO:0031966,mitochondrial membrane; GO:0032875,regulation of DNA endoreduplication; GO:0051302,regulation of cell division; GO:0051781,positive regulation of cell division;	--	NP_564963.1 sporulation protein (DUF155) [Arabidopsis thaliana]	49	52	32	52
AT1G08400	no change	-0.08758119182584867	0.9200959617493	0.9841223638527888	AT1G08400	--	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006890,retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030134,COPII-coated ER to Golgi transport vesicle; GO:0030142,COPI-coated Golgi to ER transport vesicle; GO:0060628,regulation of ER to Golgi vesicle-mediated transport; GO:0070939,Dsl1/NZR complex;	--	NP_172316.2 RINT-1 / TIP-1 family [Arabidopsis thaliana]	23	35	46	14
AT1G69070	no change	0.07471658629658684	0.9207557241637336	0.9841223638527888	AT1G69070	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0030490,maturation of SSU-rRNA; GO:0030692,Noc4p-Nop14p complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis;	--	NP_177070.1 nucleolar-like protein [Arabidopsis thaliana]	201	165	165	151
AT2G33490	no change	-0.11436600655505202	0.9207991501759276	0.9841223638527888	AT2G33490	--	GO:0003674,molecular_function;	--	NP_001323890.1 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]	21	23	14	6
AT5G58720	no change	-0.04290528286274675	0.9219221390815008	0.9841223638527888	AT5G58720	--	--	--	NP_200680.1 smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]	85	70	75	79
AT1G22880	no change	0.13957606199208428	0.922289962426578	0.9841223638527888	AT1G22880	--	GO:0000272,polysaccharide catabolic process; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008810,cellulase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030245,cellulose catabolic process; GO:0071555,cell wall organization;	E3.2.1.4; endoglucanase [EC:3.2.1.4]; K01179;	NP_001031082.1 cellulase 5 [Arabidopsis thaliana]	6	5	11	2
AT2G38470	no change	-0.08766882006182897	0.9223343042692738	0.9841223638527888	AT2G38470	WRKY	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009627,systemic acquired resistance; GO:0009651,response to salt stress; GO:0010120,camalexin biosynthetic process; GO:0010508,positive regulation of autophagy; GO:0034605,cellular response to heat; GO:0042742,defense response to bacterium; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0070370,cellular heat acclimation;	WRKY33; WRKY transcription factor 33; K13424;	NP_181381.2 WRKY DNA-binding protein 33 [Arabidopsis thaliana]	13	15	22	18
AT5G58140	no change	-0.02699763046456027	0.9225459640374962	0.9841223638527888	AT5G58140	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0007623,circadian rhythm; GO:0009536,plastid; GO:0009637,response to blue light; GO:0009638,phototropism; GO:0009785,blue light signaling pathway; GO:0009881,photoreceptor activity; GO:0009882,blue light photoreceptor activity; GO:0009902,chloroplast relocation; GO:0010118,stomatal movement; GO:0010181,FMN binding; GO:0010362,negative regulation of anion channel activity by blue light; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046777,protein autophosphorylation; GO:0050896,response to stimulus; GO:0106310,protein serine kinase activity;	--	NP_001318824.1 phototropin 2 [Arabidopsis thaliana]	213	187	166	112
AT1G04280	no change	-0.09458995627843868	0.9231528794599572	0.9841223638527888	AT1G04280	--	GO:0000166,nucleotide binding; GO:0003951,NAD+ kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0006741,NADP biosynthetic process; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_171924.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	18	22	17	13
AT4G18470	no change	0.10586197901627514	0.9231631453735004	0.9841223638527888	AT4G18470	--	GO:0000976,transcription cis-regulatory region binding; GO:0002215,defense response to nematode; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006952,defense response; GO:0006974,cellular response to DNA damage stimulus; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0010113,negative regulation of systemic acquired resistance; GO:0016444,somatic cell DNA recombination; GO:0016570,histone modification; GO:0030915,Smc5-Smc6 complex; GO:0031348,negative regulation of defense response; GO:0043966,histone H3 acetylation; GO:0045892,negative regulation of DNA-templated transcription; GO:0051572,negative regulation of histone H3-K4 methylation;	--	NP_567557.1 negative regulator of systemic acquired resistance (SNI1) [Arabidopsis thaliana]	9	14	12	6
AT4G37190	no change	0.06718750891369396	0.9234122612496894	0.9841223638527888	AT4G37190	--	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005739,mitochondrion;	--	NP_195436.1 plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein [Arabidopsis thaliana]	28	37	27	16
AT3G47060	no change	0.7251251294922412	0.9242401190884508	0.9845923411804552	AT3G47060	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding;	--	NP_566889.1 FTSH protease 7 [Arabidopsis thaliana]	76	93	60	41
AT3G14310	no change	0.03251572333657382	0.9250608454022524	0.9850543311919382	AT3G14310	--	GO:0003729,mRNA binding; GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009620,response to fungus; GO:0009624,response to nematode; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0048046,apoplast; GO:0050829,defense response to Gram-negative bacterium; GO:0071555,cell wall organization;	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051;	NP_188048.1 pectin methylesterase 3 [Arabidopsis thaliana]	1405	1160	752	679
AT3G17220	no change	-0.12272277060433012	0.9255736945434492	0.9851882277762768	AT3G17220	--	GO:0004857,enzyme inhibitor activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0012505,endomembrane system; GO:0030599,pectinesterase activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; GO:0048046,apoplast; GO:0090404,pollen tube tip;	--	NP_188348.1 pectin methylesterase inhibitor 2 [Arabidopsis thaliana]	30	8	9	16
AT4G38800	no change	-0.03408110223700422	0.9260779407532138	0.9853128592044018	AT4G38800	--	GO:0000003,reproduction; GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008652,cellular amino acid biosynthetic process; GO:0008930,methylthioadenosine nucleosidase activity; GO:0009086,methionine biosynthetic process; GO:0009116,nucleoside metabolic process; GO:0010087,phloem or xylem histogenesis; GO:0016787,hydrolase activity; GO:0019509,L-methionine salvage from methylthioadenosine;	MTN; 5'-methylthioadenosine nucleosidase [EC:3.2.2.16]; K01244;	NP_195591.1 methylthioadenosine nucleosidase 1 [Arabidopsis thaliana]	265	224	168	179
AT3G02255	no change	0.12011945280802294	0.9268976847411062	0.9856109491637396	AT3G02255	--	--	--	NP_001326112.1 hypothetical protein AT3G02255 [Arabidopsis thaliana]	5	10	11	3
AT4G13250	no change	0.06929178264541669	0.9273792523755694	0.9856109491637396	AT4G13250	--	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010304,PSII associated light-harvesting complex II catabolic process; GO:0015996,chlorophyll catabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0034256,chlorophyll(ide) b reductase activity;	NOL, NYC1; chlorophyll(ide) b reductase [EC:1.1.1.294]; K13606;	NP_001190716.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	1174	1189	1018	743
AT4G34000	no change	0.0756209606843985	0.9275199305489812	0.9856109491637396	AT4G34000	bZIP	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription;	ABF; ABA responsive element binding factor; K14432;	NP_001320130.1 abscisic acid responsive elements-binding factor 3 [Arabidopsis thaliana]	35	30	31	5
AT5G60630	no change	-0.1553236509244904	0.929185174446284	0.9869311714858248	AT5G60630	--	GO:0016020,membrane;	--	NP_200871.1 transmembrane protein [Arabidopsis thaliana]	18	6	9	7
AT3G25470	no change	0.08771380505765869	0.9295379245782012	0.9869311714858248	AT3G25470	--	GO:0003723,RNA binding; GO:0008168,methyltransferase activity; GO:0032259,methylation;	--	NP_566765.1 bacterial hemolysin-like protein [Arabidopsis thaliana]	103	126	151	92
AT3G61310	no change	-0.03364157522511846	0.9303207599410004	0.9873368895061208	AT3G61310	--	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus;	--	NP_191690.2 AT hook motif DNA-binding family protein [Arabidopsis thaliana]	96	100	100	83
AT2G30930	no change	0.08633033299370574	0.930695952033471	0.9873368895061208	AT2G30930	--	GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0009507,chloroplast;	--	NP_565708.1 hypothetical protein AT2G30930 [Arabidopsis thaliana]	20	25	16	3
AT1G32060	no change	0.07016331217191407	0.9321245712704996	0.9883884248156506	AT1G32060	--	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005975,carbohydrate metabolic process; GO:0008974,phosphoribulokinase activity; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019253,reductive pentose-phosphate cycle; GO:0042803,protein homodimerization activity; GO:0048046,apoplast; GO:0097718,disordered domain specific binding; GO:0099080,supramolecular complex;	PRK, prkB; phosphoribulokinase [EC:2.7.1.19]; K00855;	NP_174486.1 phosphoribulokinase [Arabidopsis thaliana]	2242	1878	1024	880
AT3G15390	no change	0.07470096556879469	0.9324638931168476	0.9883884248156506	AT3G15390	--	GO:0005829,cytosol; GO:0006952,defense response; GO:0010267,ta-siRNA processing; GO:0031047,gene silencing by RNA;	--	NP_001189900.1 silencing defective 5 [Arabidopsis thaliana]	23	16	31	6
AT1G41880	no change	0.07142030770174124	0.9331746396253826	0.9884431409182094	AT1G41880	--	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0042273,ribosomal large subunit biogenesis; GO:1990904,ribonucleoprotein complex;	RP-L35Ae, RPL35A; large subunit ribosomal protein L35Ae; K02917;	NP_001319158.1 Ribosomal protein L35Ae family protein [Arabidopsis thaliana]	73	85	74	53
AT1G78190	no change	0.06066878197633585	0.9332922859043054	0.9884431409182094	AT1G78190	--	GO:0005515,protein binding; GO:0018364,peptidyl-glutamine methylation; GO:0030488,tRNA methylation; GO:0046982,protein heterodimerization activity; GO:0070476,rRNA (guanine-N7)-methylation;	--	NP_177943.1 Trm112p-like protein [Arabidopsis thaliana]	17	43	21	25
AT1G27600	no change	-0.03464041521981276	0.93513252192243	0.9890543348132782	AT1G27600	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0009834,plant-type secondary cell wall biogenesis; GO:0010417,glucuronoxylan biosynthetic process; GO:0010584,pollen exine formation; GO:0015018,galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042285,xylosyltransferase activity; GO:0045492,xylan biosynthetic process; GO:0071555,cell wall organization;	--	NP_564290.2 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	106	126	107	72
AT3G51990	no change	-0.06434885450552486	0.9352736152804124	0.9890543348132782	AT3G51990	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity;	--	NP_190767.1 Protein kinase superfamily protein [Arabidopsis thaliana]	52	54	49	7
AT1G04540	no change	-0.15742918482024493	0.935666009266788	0.9890543348132782	AT1G04540	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0006952,defense response;	--	NP_171948.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]	11	10	6	4
AT4G17020	no change	0.05823195666252179	0.9357275602459748	0.9890543348132782	AT4G17020	--	GO:0000439,transcription factor TFIIH core complex; GO:0001671,ATPase activator activity; GO:0003690,double-stranded DNA binding; GO:0005634,nucleus; GO:0005675,transcription factor TFIIH holo complex; GO:0006281,DNA repair; GO:0006289,nucleotide-excision repair; GO:0006974,cellular response to DNA damage stimulus; GO:0070816,phosphorylation of RNA polymerase II C-terminal domain;	TFIIH4, GTF2H4, TFB2; transcription initiation factor TFIIH subunit 4; K03144;	NP_974564.1 transcription factor-like protein [Arabidopsis thaliana]	20	29	27	16
AT3G61530	no change	0.06871016143153774	0.936188593985244	0.9890543348132782	AT3G61530	--	GO:0000287,magnesium ion binding; GO:0003824,catalytic activity; GO:0003864,3-methyl-2-oxobutanoate hydroxymethyltransferase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0015940,pantothenate biosynthetic process; GO:0016740,transferase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0050897,cobalt ion binding;	panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]; K00606;	NP_191712.1 Phosphoenolpyruvate carboxylase family protein [Arabidopsis thaliana]	22	15	20	11
AT2G24830	no change	-0.11214194327622272	0.9362011365678534	0.9890543348132782	AT2G24830	C3H	GO:0003674,molecular_function; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0008150,biological_process; GO:0046872,metal ion binding;	--	NP_180056.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [Arabidopsis thaliana]	19	17	6	11
AT3G56150	no change	-0.02402164489661906	0.93677769288962	0.989252791868914	AT3G56150	--	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0031369,translation initiation factor binding; GO:0033290,eukaryotic 48S preinitiation complex;	EIF3C; translation initiation factor 3 subunit C; K03252;	NP_001190102.1 eukaryotic translation initiation factor 3C [Arabidopsis thaliana]	1896	1874	1755	1332
AT1G47128	no change	-0.01893240053829981	0.9372254682786784	0.9893151459017988	AT1G47128	--	GO:0000325,plant-type vacuole; GO:0000932,P-body; GO:0004197,cysteine-type endopeptidase activity; GO:0005515,protein binding; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005764,lysosome; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009506,plasmodesma; GO:0010494,cytoplasmic stress granule; GO:0016567,protein ubiquitination; GO:0016787,hydrolase activity; GO:0048046,apoplast; GO:0050832,defense response to fungus; GO:0051603,proteolysis involved in protein catabolic process; GO:0090333,regulation of stomatal closure; GO:0099503,secretory vesicle;	--	NP_564497.1 Granulin repeat cysteine protease family protein [Arabidopsis thaliana]	3715	3380	3041	2274
AT1G45545	no change	0.05165250396859555	0.9391004465682768	0.9905666116407496	AT1G45545	--	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009903,chloroplast avoidance movement; GO:0009904,chloroplast accumulation movement;	--	NP_001322527.1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) [Arabidopsis thaliana]	81	26	22	23
AT4G38210	no change	-0.06645284588863198	0.9391894828640978	0.9905666116407496	AT4G38210	--	GO:0005576,extracellular region; GO:0006949,syncytium formation; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0071555,cell wall organization;	--	NP_195534.1 expansin A20 [Arabidopsis thaliana]	26	24	16	26
AT1G19715	no change	0.08848703627768018	0.9409219599897984	0.991982762292476	AT1G19715	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0030246,carbohydrate binding;	--	NP_849691.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]	7	13	9	6
AT4G00670	no change	0.1085297386721642	0.942228981104178	0.9920449499674208	AT4G00670	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:1901700,response to oxygen-containing compound;	--	NP_191976.2 Remorin family protein [Arabidopsis thaliana]	5	8	8	3
AT2G41705	no change	0.07539037557381612	0.942257748524513	0.9920449499674208	AT2G41705	--	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1903424,fluoride transmembrane transport; GO:1903425,fluoride transmembrane transporter activity;	--	NP_001154568.1 camphor resistance CrcB family protein [Arabidopsis thaliana]	22	12	4	22
AT1G68940	no change	-0.08783387234758067	0.9423270532820124	0.9920449499674208	AT1G68940	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination;	--	NP_001319353.1 Armadillo/beta-catenin-like repeat family protein [Arabidopsis thaliana]	14	6	3	3
AT5G53430	no change	-0.09750731996184037	0.9425401528570622	0.9920449499674208	AT5G53430	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006357,regulation of transcription by RNA polymerase II; GO:0008168,methyltransferase activity; GO:0009294,DNA-mediated transformation; GO:0009506,plasmodesma; GO:0016570,histone modification; GO:0016740,transferase activity; GO:0018024,histone-lysine N-methyltransferase activity; GO:0031011,Ino80 complex; GO:0032259,methylation; GO:0046872,metal ion binding; GO:0048188,Set1C/COMPASS complex; GO:0051171,regulation of nitrogen compound metabolic process; GO:0051571,positive regulation of histone H3-K4 methylation; GO:0060255,regulation of macromolecule metabolic process; GO:0080090,regulation of primary metabolic process;	--	NP_200155.2 SET domain group 29 [Arabidopsis thaliana]	22	27	7	19
AT2G21960	no change	0.02977117846210619	0.943635401330778	0.9925033707309818	AT2G21960	--	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0016020,membrane;	--	NP_565523.1 transmembrane protein [Arabidopsis thaliana]	88	111	84	44
AT3G57790	no change	0.07117900662611731	0.943938769725338	0.9925033707309818	AT3G57790	--	GO:0000325,plant-type vacuole; GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity;	--	NP_001327729.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	82	67	54	39
AT5G14460	no change	-0.03116488194619027	0.944145642648215	0.9925033707309818	AT5G14460	--	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0006396,RNA processing; GO:0006400,tRNA modification; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:1990481,mRNA pseudouridine synthesis;	--	NP_196950.2 Pseudouridine synthase family protein [Arabidopsis thaliana]	88	100	95	54
AT2G18400	no change	0.03559368400318696	0.945981622849705	0.9940228035311722	AT2G18400	--	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex;	RP-L6, MRPL6, rplF; large subunit ribosomal protein L6; K02933;	NP_565438.1 ribosomal protein L6 family protein [Arabidopsis thaliana]	52	43	56	30
AT3G52250	no change	0.06586527407568532	0.9481486224202722	0.9958886686172482	AT3G52250	MYB	GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0010468,regulation of gene expression; GO:0010582,floral meristem determinacy; GO:1900055,regulation of leaf senescence; GO:1990619,histone H3-K9 deacetylation; GO:2000617,positive regulation of histone H3-K9 acetylation;	--	NP_001327905.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]	183	152	179	132
AT5G18290	no change	-0.06219965333705346	0.9488817970872714	0.9962157842215704	AT5G18290	--	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006833,water transport; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0055085,transmembrane transport;	--	NP_001190329.1 Aquaporin-like superfamily protein [Arabidopsis thaliana]	29	35	16	15
AT1G28390	no change	0.04167820116455001	0.9492429378142666	0.9962157842215704	AT1G28390	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0106310,protein serine kinase activity;	--	NP_001185106.1 Protein kinase superfamily protein [Arabidopsis thaliana]	60	28	20	39
AT1G48320	no change	-0.17713317628826886	0.95210141174344	0.998212166818215	AT1G48320	--	GO:0005777,peroxisome; GO:0016787,hydrolase activity; GO:0042372,phylloquinone biosynthetic process; GO:0051289,protein homotetramerization; GO:0061522,1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity;	menI, DHNAT; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]; K19222;	NP_175266.1 Thioesterase superfamily protein [Arabidopsis thaliana]	7	16	9	1
AT1G05835	no change	0.04037238871818971	0.9521484079285654	0.998212166818215	AT1G05835	--	GO:0001709,cell fate determination; GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_001077465.1 PHD finger protein [Arabidopsis thaliana]	29	66	21	27
AT3G17650	no change	0.03328248862047367	0.9523218628819748	0.998212166818215	AT3G17650	--	GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity;	--	NP_001325744.1 YELLOW STRIPE like 5 [Arabidopsis thaliana]	63	45	29	25
AT4G20040	no change	-0.07572544079861565	0.9532000539894724	0.9987213410470184	AT4G20040	--	GO:0004650,polygalacturonase activity; GO:0016829,lyase activity;	--	NP_567595.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]	29	15	19	10
AT5G57040	no change	0.03488363954437901	0.9536933654700572	0.9988270021075292	AT5G57040	--	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0016829,lyase activity;	yaeR; glyoxylase I family protein; K08234;	NP_200514.1 Lactoylglutathione lyase / glyoxalase I family protein [Arabidopsis thaliana]	60	54	20	35
AT5G20590	no change	0.04508819105330275	0.9570832979500572	0.9999957398723576	AT5G20590	--	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity;	--	NP_197559.1 TRICHOME BIREFRINGENCE-LIKE 5 [Arabidopsis thaliana]	28	22	16	10
AT5G19750	no change	0.04425877408644041	0.9573004432486778	0.9999957398723576	AT5G19750	--	GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane;	MPV17; protein Mpv17; K13348;	NP_197476.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]	46	52	50	34
AT4G17480	no change	-0.02984920777065625	0.959026978697366	0.9999957398723576	AT4G17480	--	GO:0016787,hydrolase activity; GO:0016790,thiolester hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0098599,palmitoyl hydrolase activity; GO:0098734,macromolecule depalmitoylation;	PPT; palmitoyl-protein thioesterase [EC:3.1.2.22]; K01074;	NP_193478.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	85	38	39	25
AT3G29670	no change	-0.11077748345936378	0.9598261029721822	0.9999957398723576	AT3G29670	--	GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0050736,O-malonyltransferase activity;	--	NP_189609.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]	14	9	15	3
AT1G74470	no change	-0.0177729140520455	0.9601157894087772	0.9999957398723576	AT1G74470	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010189,vitamin E biosynthetic process; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016628,oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; GO:0031969,chloroplast membrane; GO:0045550,geranylgeranyl reductase activity; GO:0102067,geranylgeranyl diphosphate reductase activity;	chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]; K10960;	CAA74372.1 geranylgeranyl reductase, partial [Arabidopsis thaliana]	8491	6419	4326	3456
AT1G24350	no change	-0.09889233851132406	0.9608178929035064	0.9999957398723576	AT1G24350	--	GO:0003674,molecular_function; GO:0016020,membrane;	K09775; uncharacterized protein; K09775;	NP_564215.1 Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Arabidopsis thaliana]	9	25	25	9
AT2G35658	no change	0.09158667620185668	0.9617829543935617	0.9999957398723576	AT2G35658	--	GO:0003674,molecular_function; GO:0016020,membrane;	--	NP_001118445.1 transmembrane protein [Arabidopsis thaliana]	17	9	4	1
AT4G31850	no change	0.041839659253724903	0.9620118688330352	0.9999957398723576	AT4G31850	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0032544,plastid translation; GO:0043489,RNA stabilization;	--	NP_194913.1 proton gradient regulation 3 [Arabidopsis thaliana]	155	168	90	51
AT4G19530	no change	-0.03425492123007068	0.9620530565926204	0.9999957398723576	AT4G19530	--	GO:0000166,nucleotide binding; GO:0002758,innate immune response-activating signal transduction; GO:0003953,NAD+ nucleosidase activity; GO:0005524,ATP binding; GO:0006952,defense response; GO:0007165,signal transduction; GO:0016787,hydrolase activity; GO:0043531,ADP binding; GO:0050135,NAD(P)+ nucleosidase activity; GO:0061809,NAD+ nucleotidase, cyclic ADP-ribose generating;	--	NP_001328514.1 disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]	50	42	30	22
AT1G79710	no change	0.0506764317397792	0.9621881501824728	0.9999957398723576	AT1G79710	--	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; GO:0016021,integral component of membrane;	--	NP_001322738.1 Major facilitator superfamily protein [Arabidopsis thaliana]	19	18	18	2
AT5G09660	no change	-0.01206089135031351	0.9636663239253588	0.9999957398723576	AT5G09660	--	GO:0000325,plant-type vacuole; GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006097,glyoxylate cycle; GO:0006099,tricarboxylic acid cycle; GO:0006108,malate metabolic process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016615,malate dehydrogenase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0030060,L-malate dehydrogenase activity; GO:0031998,regulation of fatty acid beta-oxidation; GO:0042579,microbody; GO:0048046,apoplast; GO:0080093,regulation of photorespiration;	MDH2; malate dehydrogenase [EC:1.1.1.37]; K00026;	NP_196528.1 peroxisomal NAD-malate dehydrogenase 2 [Arabidopsis thaliana]	419	373	216	157
AT1G08315	no change	0.02584576878942623	0.9646682256892292	0.9999957398723576	AT1G08315	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm;	--	NP_849613.1 ARM repeat superfamily protein [Arabidopsis thaliana]	37	50	35	26
AT1G20620	no change	-0.00608217022412382	0.9652699156993222	0.9999957398723576	AT1G20620	--	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004096,catalase activity; GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006979,response to oxidative stress; GO:0006995,cellular response to nitrogen starvation; GO:0007623,circadian rhythm; GO:0009408,response to heat; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009416,response to light stimulus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009617,response to bacterium; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0009970,cellular response to sulfate starvation; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0022626,cytosolic ribosome; GO:0035605,peptidyl-cysteine S-nitrosylase activity; GO:0035606,peptidyl-cysteine S-trans-nitrosylation; GO:0042542,response to hydrogen peroxide; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0050897,cobalt ion binding; GO:0051716,cellular response to stimulus; GO:0098869,cellular oxidant detoxification; GO:1902074,response to salt;	katE, CAT, catB, srpA; catalase [EC:1.11.1.6]; K03781;	NP_564120.1 catalase 3 [Arabidopsis thaliana]	4874	4324	4410	3405
AT5G12360	no change	-0.13599968067227053	0.9658533895245875	0.9999957398723576	AT5G12360	--	GO:0005575,cellular_component; GO:0007346,regulation of mitotic cell cycle; GO:0034090,maintenance of meiotic sister chromatid cohesion;	--	NP_001318549.1 hypothetical protein AT5G12360 [Arabidopsis thaliana]	11	6	6	6
AT3G49790	no change	0.04541327959142194	0.9659492745040862	0.9999957398723576	AT3G49790	--	GO:0003674,molecular_function; GO:0005575,cellular_component;	--	NP_190548.1 Carbohydrate-binding protein [Arabidopsis thaliana]	12	10	14	4
AT1G20550	no change	0.04340309051911006	0.9660281095065092	0.9999957398723576	AT1G20550	--	GO:0005575,cellular_component; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_173479.3 O-fucosyltransferase family protein [Arabidopsis thaliana]	18	19	18	4
AT5G25470	no change	-0.12421991975589464	0.966462377633856	0.9999957398723576	AT5G25470	B3	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0008150,biological_process;	--	NP_001318648.1 AP2/B3-like transcriptional factor family protein [Arabidopsis thaliana]	16	5	5	9
AT1G75450	no change	0.01805185155780453	0.9667752190647704	0.9999957398723576	AT1G75450	--	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009690,cytokinin metabolic process; GO:0009823,cytokinin catabolic process; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding;	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279;	NP_177678.2 cytokinin oxidase 5 [Arabidopsis thaliana]	79	54	74	57
AT2G32400	no change	-0.04270418929291431	0.9678670945144704	0.9999957398723576	AT2G32400	--	GO:0005262,calcium channel activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0008066,glutamate receptor activity; GO:0009506,plasmodesma; GO:0015276,ligand-gated ion channel activity; GO:0016020,membrane; GO:0019722,calcium-mediated signaling; GO:0034220,ion transmembrane transport; GO:0038023,signaling receptor activity; GO:0070588,calcium ion transmembrane transport; GO:0071230,cellular response to amino acid stimulus;	--	NP_565744.1 glutamate receptor 5 [Arabidopsis thaliana]	32	38	28	10
AT3G12020	no change	-0.02397805007523112	0.9682160973873096	0.9999957398723576	AT3G12020	--	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005871,kinesin complex; GO:0005874,microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	--	NP_001325623.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	85	67	103	49
AT1G69570	no change	0.0242169599861306	0.9682162918684036	0.9999957398723576	AT1G69570	Dof	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009908,flower development; GO:0046872,metal ion binding; GO:0048577,negative regulation of short-day photoperiodism, flowering; GO:0048579,negative regulation of long-day photoperiodism, flowering;	--	NP_177116.1 Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]	44	24	30	27
AT5G59660	no change	0.04694824371944506	0.9695801072630212	0.9999957398723576	AT5G59660	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	--	NP_001331676.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]	3	8	11	3
AT4G38650	no change	-0.06850364948551757	0.9700348358730864	0.9999957398723576	AT4G38650	--	GO:0000272,polysaccharide catabolic process; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975,carbohydrate metabolic process; GO:0016787,hydrolase activity; GO:0031176,endo-1,4-beta-xylanase activity;	--	NP_195577.2 Glycosyl hydrolase family 10 protein [Arabidopsis thaliana]	19	20	8	8
AT5G63480	no change	-0.03023070281317963	0.971258633114594	0.9999957398723576	AT5G63480	--	GO:0005634,nucleus; GO:0016592,mediator complex;	--	NP_001332538.1 mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]	18	19	10	23
AT2G39795	no change	0.02498394609581034	0.9713554546619282	0.9999957398723576	AT2G39795	--	GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005794,Golgi apparatus;	--	NP_565914.1 Mitochondrial glycoprotein family protein [Arabidopsis thaliana]	112	104	85	68
AT5G06265	no change	-0.0394099084956423	0.9715167580594408	0.9999957398723576	AT5G06265	--	GO:0008150,biological_process;	--	NP_001330372.1 hyaluronan mediated motility receptor-like protein [Arabidopsis thaliana]	13	4	5	4
AT1G61667	no change	0.03769461189352796	0.9721070873726808	0.9999957398723576	AT1G61667	--	GO:0003674,molecular_function;	--	NP_001322874.1 serine protease, putative (Protein of unknown function, DUF538) [Arabidopsis thaliana]	5	14	9	8
AT4G01030	no change	0.04068215201975178	0.9721200297523332	0.9999957398723576	AT4G01030	--	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0008150,biological_process; GO:0008270,zinc ion binding;	--	NP_192012.2 pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]	13	7	8	8
AT2G24180	no change	0.0140611683828542	0.9733046322484588	0.9999957398723576	AT2G24180	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0042430,indole-containing compound metabolic process; GO:0046872,metal ion binding;	--	NP_179995.1 cytochrome p450 71b6 [Arabidopsis thaliana]	82	90	77	47
AT3G24500	no change	0.03699563319916343	0.9733836040581736	0.9999957398723576	AT3G24500	--	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009737,response to abscisic acid; GO:0009873,ethylene-activated signaling pathway; GO:0045893,positive regulation of DNA-templated transcription; GO:0071456,cellular response to hypoxia;	MBF1; putative transcription factor; K03627;	NP_189093.1 multiprotein bridging factor 1C [Arabidopsis thaliana]	10	12	13	6
AT4G20760	no change	-0.0213113214745757	0.9738896977699872	0.9999957398723576	AT4G20760	--	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009507,chloroplast;	--	NP_001329369.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	56	88	34	46
AT4G34131	no change	-0.11381740535741258	0.9745205824482208	0.9999957398723576	AT4G34131	--	GO:0006952,defense response; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0051707,response to other organism; GO:0071456,cellular response to hypoxia; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity;	--	NP_567953.1 UDP-glucosyl transferase 73B3 [Arabidopsis thaliana]	13	10	3	5
AT2G36026	no change	-0.07309733475269198	0.97501471946654	0.9999957398723576	AT2G36026	--	GO:0005515,protein binding; GO:0005634,nucleus; GO:0045892,negative regulation of DNA-templated transcription;	--	NP_001118449.1 Ovate family protein [Arabidopsis thaliana]	4	11	5	6
AT5G58540	no change	-0.03349157087380305	0.9750216108721896	0.9999957398723576	AT5G58540	--	GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_974960.1 Protein kinase superfamily protein [Arabidopsis thaliana]	8	14	8	5
AT4G09640	no change	0.01802551040240096	0.9752382038996462	0.9999957398723576	AT4G09640	--	GO:0005768,endosome; GO:0005769,early endosome; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0015095,magnesium ion transmembrane transporter activity; GO:0015693,magnesium ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1903830,magnesium ion transmembrane transport;	--	NP_192702.2 magnesium transporter, putative (DUF803) [Arabidopsis thaliana]	44	43	24	27
AT3G11660	no change	0.02576231700130371	0.9759617299293224	0.9999957398723576	AT3G11660	--	GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0051607,defense response to virus; GO:0098542,defense response to other organism;	--	NP_566396.1 NDR1/HIN1-like 1 [Arabidopsis thaliana]	106	103	70	78
AT3G21320	no change	-0.08723505754915983	0.9763743275051864	0.9999957398723576	AT3G21320	--	GO:2000028,regulation of photoperiodism, flowering;	--	CAD5323727.1 unnamed protein product [Arabidopsis thaliana]	13	8	4	12
AT1G64970	no change	-0.00496213556866642	0.976877732773939	0.9999957398723576	AT1G64970	--	GO:0005634,nucleus; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010189,vitamin E biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0050342,tocopherol O-methyltransferase activity; GO:0071704,organic substance metabolic process;	E2.1.1.95; tocopherol O-methyltransferase [EC:2.1.1.95]; K05928;	NP_176677.1 gamma-tocopherol methyltransferase [Arabidopsis thaliana]	377	381	235	207
AT5G16370	no change	0.00925460512013987	0.9775233958999776	0.9999957398723576	AT5G16370	--	GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity;	--	NP_197141.1 acyl activating enzyme 5 [Arabidopsis thaliana]	187	185	71	61
AT1G05730	no change	-0.1251429359444476	0.97826975299717	0.9999957398723576	AT1G05730	--	GO:0005737,cytoplasm; GO:0008150,biological_process;	--	NP_172064.2 FAM136A-like protein (DUF842) [Arabidopsis thaliana]	14	19	26	1
AT2G20180	no change	-0.07094630529510582	0.9783308762291846	0.9999957398723576	AT2G20180	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006783,heme biosynthetic process; GO:0009686,gibberellin biosynthetic process; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009959,negative gravitropism; GO:0010029,regulation of seed germination; GO:0010099,regulation of photomorphogenesis; GO:0010100,negative regulation of photomorphogenesis; GO:0010161,red light signaling pathway; GO:0010187,negative regulation of seed germination; GO:0010313,phytochrome binding; GO:0015995,chlorophyll biosynthetic process; GO:0042802,identical protein binding; GO:0046983,protein dimerization activity;	--	NP_001323903.1 phytochrome interacting factor 3-like 5 [Arabidopsis thaliana]	18	13	8	6
AT1G19710	no change	0.02242818567424898	0.9786828172102632	0.9999957398723576	AT1G19710	--	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_173401.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	26	26	14	13
AT1G12060	no change	-0.05043048671143246	0.978735398345433	0.9999957398723576	AT1G12060	--	GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005739,mitochondrion; GO:0006457,protein folding; GO:0051087,chaperone binding;	--	NP_172670.2 BCL-2-associated athanogene 5 [Arabidopsis thaliana]	23	20	14	14
AT4G24770	no change	-0.00512212603496564	0.9789965410534596	0.9999957398723576	AT4G24770	--	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008266,poly(U) RNA binding; GO:0009409,response to cold; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009631,cold acclimation; GO:0009941,chloroplast envelope; GO:0016553,base conversion or substitution editing; GO:0043489,RNA stabilization; GO:0045087,innate immune response; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	--	NP_001328008.1 31-kDa RNA binding protein [Arabidopsis thaliana]	2679	2833	1488	1416
AT2G32720	no change	-0.00364112088970713	0.9792288602283828	0.9999957398723576	AT2G32720	--	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane; GO:0020037,heme binding; GO:0042761,very long-chain fatty acid biosynthetic process; GO:0043231,intracellular membrane-bounded organelle; GO:0043447,alkane biosynthetic process; GO:0046872,metal ion binding;	CYB5; cytochrome b5; K23490;	NP_180831.1 cytochrome B5 isoform B [Arabidopsis thaliana]	359	319	228	168
AT2G24190	no change	-0.01957234252285289	0.9794654187778232	0.9999957398723576	AT2G24190	--	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0008106,alcohol dehydrogenase (NADP+) activity; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;	E1.1.1.208; (+)-neomenthol dehydrogenase [EC:1.1.1.208]; K15095;	NP_179996.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]	18	17	10	19
AT1G48960	no change	0.03522175275351102	0.98009838986168	0.9999957398723576	AT1G48960	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016787,hydrolase activity;	--	NP_564536.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]	4	9	10	1
AT5G05190	no change	-0.02184289840565867	0.9803861570510404	0.9999957398723576	AT5G05190	--	GO:0005515,protein binding; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0006952,defense response; GO:0009620,response to fungus; GO:0009863,salicylic acid mediated signaling pathway; GO:0016020,membrane; GO:0030100,regulation of endocytosis; GO:1900150,regulation of defense response to fungus;	--	NP_196138.1 hypothetical protein (DUF3133) [Arabidopsis thaliana]	20	8	11	3
AT2G20900	no change	-0.01067575309551749	0.9805322971454236	0.9999957398723576	AT2G20900	--	GO:0000166,nucleotide binding; GO:0004143,diacylglycerol kinase activity; GO:0005524,ATP binding; GO:0006952,defense response; GO:0007165,signal transduction; GO:0007205,protein kinase C-activating G protein-coupled receptor signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity;	dgkA, DGK; diacylglycerol kinase (ATP) [EC:2.7.1.107]; K00901;	NP_001031381.1 diacylglycerol kinase 5 [Arabidopsis thaliana]	157	157	99	58
AT4G39970	no change	-0.00440361975588032	0.9808612246499816	0.9999957398723576	AT4G39970	--	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016787,hydrolase activity; GO:0046872,metal ion binding;	--	NP_568077.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]	240	201	165	104
AT1G20920	no change	-0.01962219817865929	0.9809028022501526	0.9999957398723576	AT1G20920	--	GO:0000166,nucleotide binding; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity;	DDX46, PRP5; ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13]; K12811;	NP_001322011.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]	86	83	50	17
AT1G29790	no change	0.01857158725830565	0.9810630635456282	0.9999957398723576	AT1G29790	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation;	--	NP_001117383.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]	188	144	94	97
AT4G00490	no change	0.02041019890972251	0.9811677021975578	0.9999957398723576	AT4G00490	--	GO:0000272,polysaccharide catabolic process; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016161,beta-amylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0102229,amylopectin maltohydrolase activity;	E3.2.1.2; beta-amylase [EC:3.2.1.2]; K01177;	NP_191958.3 beta-amylase 2 [Arabidopsis thaliana]	322	294	193	105
AT5G12110	no change	-0.02320717123914661	0.981213837870457	0.9999957398723576	AT5G12110	--	GO:0003746,translation elongation factor activity; GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005853,eukaryotic translation elongation factor 1 complex; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009536,plastid; GO:0016020,membrane; GO:0050790,regulation of catalytic activity;	--	NP_196772.1 elongation factor 1-beta 1 [Arabidopsis thaliana]	18	8	11	6
AT2G45800	no change	-0.00960908475005162	0.982274184340957	0.9999957398723576	AT2G45800	--	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0015629,actin cytoskeleton; GO:0046872,metal ion binding; GO:0051015,actin filament binding; GO:0051017,actin filament bundle assembly;	--	CAD5321489.1 unnamed protein product [Arabidopsis thaliana]	63	66	46	21
AT4G15480	no change	0.01219486187470586	0.9826021405588063	0.9999957398723576	AT4G15480	--	GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0010224,response to UV-B; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047218,hydroxycinnamate 4-beta-glucosyltransferase activity; GO:0050284,sinapate 1-glucosyltransferase activity; GO:0050412,cinnamate beta-D-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	--	NP_193283.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	55	76	20	34
AT1G22370	no change	0.02641781382096653	0.9826858598866292	0.9999957398723576	AT1G22370	--	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity;	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452;	NP_973885.1 UDP-glucosyl transferase 85A5 [Arabidopsis thaliana]	11	8	6	10
AT4G19170	no change	-0.00252145918414026	0.9835169307953392	0.9999957398723576	AT4G19170	--	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010287,plastoglobule; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:1901811,beta-carotene catabolic process;	NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840;	NP_193652.1 nine-cis-epoxycarotenoid dioxygenase 4 [Arabidopsis thaliana]	411	296	249	245
AT3G55520	no change	0.01671664192137356	0.9840067458454608	0.9999957398723576	AT3G55520	--	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016853,isomerase activity; GO:0061077,chaperone-mediated protein folding;	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802;	NP_001327833.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]	20	29	7	18
AT4G24010	no change	-0.01050364539796078	0.9843208880796736	0.9999957398723576	AT4G24010	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009833,plant-type primary cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016760,cellulose synthase (UDP-forming) activity; GO:0030244,cellulose biosynthetic process; GO:0051753,mannan synthase activity; GO:0071555,cell wall organization; GO:0097502,mannosylation;	--	NP_194132.3 cellulose synthase like G1 [Arabidopsis thaliana]	41	34	28	15
AT3G02410	no change	0.02181696991218018	0.9844939543536712	0.9999957398723576	AT3G02410	--	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0009737,response to abscisic acid; GO:0010296,prenylcysteine methylesterase activity; GO:0016020,membrane; GO:0016787,hydrolase activity;	PCME; prenylcysteine alpha-carboxyl methylesterase [EC:3.1.1.-]; K15889;	NP_186890.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	12	13	9	9
AT5G04700	no change	-0.01520732645828815	0.984851030327252	0.9999957398723576	AT5G04700	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane;	--	NP_196090.1 Ankyrin repeat family protein [Arabidopsis thaliana]	13	13	15	9
AT1G35350	no change	0.01541302893015661	0.9853771801680724	0.9999957398723576	AT1G35350	--	GO:0000822,inositol hexakisphosphate binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0006817,phosphate ion transport; GO:0015114,phosphate ion transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016036,cellular response to phosphate starvation; GO:0035435,phosphate ion transmembrane transport;	--	NP_174768.2 EXS (ERD1/XPR1/SYG1) family protein [Arabidopsis thaliana]	32	14	18	11
AT4G08590	no change	-0.01392464944893845	0.985551296075933	0.9999957398723576	AT4G08590	--	GO:0003677,DNA binding; GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008327,methyl-CpG binding; GO:0010216,maintenance of DNA methylation; GO:0010424,DNA methylation on cytosine within a CG sequence; GO:0010428,methyl-CpNpG binding; GO:0010429,methyl-CpNpN binding; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0042393,histone binding; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity;	--	NP_192599.2 ORTHRUS-like protein [Arabidopsis thaliana]	19	14	13	12
AT4G00150	no change	0.01260970763417645	0.9859893163843286	0.9999957398723576	AT4G00150	GRAS	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0030154,cell differentiation; GO:0043565,sequence-specific DNA binding; GO:0048768,root hair cell tip growth; GO:0051301,cell division;	--	NP_191926.1 GRAS family transcription factor [Arabidopsis thaliana]	25	28	14	25
AT3G06470	no change	-0.00262195032757972	0.9860679632837204	0.9999957398723576	AT3G06470	--	GO:0005515,protein binding; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0008610,lipid biosynthetic process; GO:0009922,fatty acid elongase activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016740,transferase activity; GO:0019367,fatty acid elongation, saturated fatty acid; GO:0030148,sphingolipid biosynthetic process; GO:0034625,fatty acid elongation, monounsaturated fatty acid; GO:0034626,fatty acid elongation, polyunsaturated fatty acid; GO:0042761,very long-chain fatty acid biosynthetic process; GO:0044249,cellular biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity;	--	NP_187298.1 GNS1/SUR4 membrane protein family [Arabidopsis thaliana]	28	20	18	19
AT1G29800	no change	-0.00504312663990069	0.9862604129709924	0.9999957398723576	AT1G29800	--	GO:0035091,phosphatidylinositol binding; GO:0046872,metal ion binding;	--	NP_174273.3 RING/FYVE/PHD-type zinc finger family protein [Arabidopsis thaliana]	145	118	93	91
AT1G54160	no change	-0.02943628418170796	0.9865453095767286	0.9999957398723576	AT1G54160	NF-YA	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009414,response to water deprivation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009785,blue light signaling pathway; GO:0009793,embryo development ending in seed dormancy; GO:0010262,somatic embryogenesis; GO:0016602,CCAAT-binding factor complex; GO:0045892,negative regulation of DNA-templated transcription; GO:0048316,seed development;	NFYA, HAP2; nuclear transcription factor Y, alpha; K08064;	NP_175818.1 nuclear factor Y, subunit A5 [Arabidopsis thaliana]	27	21	28	18
AT4G28180	no change	0.01737560848881081	0.986743544612327	0.9999957398723576	AT4G28180	--	--	--	NP_194547.1 hypothetical protein AT4G28180 [Arabidopsis thaliana]	19	14	11	6
AT1G17620	no change	0.01675178117877074	0.9867924583745324	0.9999957398723576	AT1G17620	--	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane;	--	KAG7654648.1 Late embryogenesis abundant protein LEA_2 subgroup [Arabidopsis suecica]	178	157	148	90
AT3G15460	no change	-0.00636522066996203	0.9869242207273794	0.9999957398723576	AT3G15460	--	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis;	--	NP_566514.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]	58	56	79	60
AT1G66510	no change	-0.01210724360962522	0.9871436328636112	0.9999957398723576	AT1G66510	--	GO:0000244,spliceosomal tri-snRNP complex assembly;	--	NP_001323254.1 AAR2 protein family [Arabidopsis thaliana]	21	21	31	14
AT4G37540	no change	-0.01216219096902726	0.9872842213332	0.9999957398723576	AT4G37540	LBD	GO:0005575,cellular_component; GO:0010468,regulation of gene expression;	--	NP_195470.1 LOB domain-containing protein 39 [Arabidopsis thaliana]	21	22	13	14
AT5G19150	no change	-0.00770434316359924	0.9873294770741174	0.9999957398723576	AT5G19150	--	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006734,NADH metabolic process; GO:0006739,NADP metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0046496,nicotinamide nucleotide metabolic process; GO:0047453,ATP-dependent NAD(P)H-hydrate dehydratase activity; GO:0110051,metabolite repair;	CARKD; ATP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.93]; K17757;	NP_568369.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	45	37	46	27
AT5G66520	no change	-0.01662358372161421	0.9874955102393588	0.9999957398723576	AT5G66520	--	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0016554,cytidine to uridine editing; GO:1900865,chloroplast RNA modification;	--	NP_201453.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]	18	9	9	4
AT3G08900	no change	-0.01903354724177841	0.9876954647161283	0.9999957398723576	AT3G08900	--	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009832,plant-type cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016853,isomerase activity; GO:0016866,intramolecular transferase activity; GO:0033356,UDP-L-arabinose metabolic process; GO:0052691,UDP-arabinopyranose mutase activity; GO:0071555,cell wall organization; GO:0071669,plant-type cell wall organization or biogenesis;	RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30]; K13379;	NP_187502.2 reversibly glycosylated polypeptide 3 [Arabidopsis thaliana]	48	40	35	18
AT4G38370	no change	-0.02263780909337409	0.9882999041876214	0.9999957398723576	AT4G38370	--	GO:0003674,molecular_function; GO:0008150,biological_process;	--	NP_568040.1 Phosphoglycerate mutase family protein [Arabidopsis thaliana]	39	33	33	13
AT5G57150	no change	-0.0175839181594597	0.9885895251849433	0.9999957398723576	AT5G57150	bHLH	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016020,membrane; GO:0046983,protein dimerization activity;	--	NP_001190556.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]	9	14	7	5
AT5G57160	no change	-0.01023424913275228	0.988730892985408	0.9999957398723576	AT5G57160	--	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003909,DNA ligase activity; GO:0003910,DNA ligase (ATP) activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006281,DNA repair; GO:0006297,nucleotide-excision repair, DNA gap filling; GO:0006302,double-strand break repair; GO:0006303,double-strand break repair via nonhomologous end joining; GO:0006310,DNA recombination; GO:0006974,cellular response to DNA damage stimulus; GO:0009506,plasmodesma; GO:0010165,response to X-ray; GO:0016874,ligase activity; GO:0032807,DNA ligase IV complex; GO:0046872,metal ion binding; GO:0051103,DNA ligation involved in DNA repair; GO:0071897,DNA biosynthetic process;	LIG4, DNL4; DNA ligase 4 [EC:6.5.1.1]; K10777;	NP_568851.2 DNA ligase IV [Arabidopsis thaliana]	63	59	53	35
AT5G53130	no change	0.01968917762190081	0.9902774579839816	0.9999957398723576	AT5G53130	--	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport;	CNGC; cyclic nucleotide gated channel, plant; K05391;	NP_200125.1 cyclic nucleotide gated channel 1 [Arabidopsis thaliana]	160	141	127	76
AT4G29780	no change	-0.00432080053319339	0.9905890032798428	0.9999957398723576	AT4G29780	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0071456,cellular response to hypoxia;	--	NP_567834.2 nuclease [Arabidopsis thaliana]	69	51	34	35
AT1G05630	no change	-0.00993519256407537	0.9906003286018806	0.9999957398723576	AT1G05630	--	GO:0003824,catalytic activity; GO:0004439,phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; GO:0004445,inositol-polyphosphate 5-phosphatase activity; GO:0004519,endonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0007584,response to nutrient; GO:0009611,response to wounding; GO:0009630,gravitropism; GO:0009637,response to blue light; GO:0009737,response to abscisic acid; GO:0009743,response to carbohydrate; GO:0009846,pollen germination; GO:0010087,phloem or xylem histogenesis; GO:0010182,sugar mediated signaling pathway; GO:0010252,auxin homeostasis; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0046855,inositol phosphate dephosphorylation; GO:0046856,phosphatidylinositol dephosphorylation; GO:0046872,metal ion binding; GO:0048364,root development; GO:0052658,inositol-1,4,5-trisphosphate 5-phosphatase activity; GO:0052659,inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis;	--	NP_172054.3 Endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]	553	317	225	335
AT1G12550	no change	-0.00714179055781638	0.9907702966196484	0.9999957398723576	AT1G12550	--	GO:0005829,cytosol; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0051287,NAD binding;	HPR2_3; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]; K15919;	NP_172716.1 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Arabidopsis thaliana]	46	49	27	7
AT1G10140	no change	0.00720339282475901	0.9916964076522976	0.9999957398723576	AT1G10140	--	GO:0005575,cellular_component; GO:0071456,cellular response to hypoxia;	--	NP_563861.1 Uncharacterized conserved protein UCP031279 [Arabidopsis thaliana]	21	28	24	18
AT2G25660	no change	0.0050428186543705	0.9920141701229316	0.9999957398723576	AT2G25660	--	GO:0005515,protein binding; GO:0005887,integral component of plasma membrane; GO:0009306,protein secretion; GO:0009501,amyloplast; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009660,amyloplast organization; GO:0009706,chloroplast inner membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0031972,chloroplast intermembrane space;	--	NP_001324008.1 embryo defective 2410 [Arabidopsis thaliana]	49	31	30	32
AT5G55660	no change	-0.00184062596823419	0.992351612848406	0.9999957398723576	AT5G55660	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006325,chromatin organization; GO:0009536,plastid; GO:0042393,histone binding; GO:2000779,regulation of double-strand break repair;	--	NP_200377.1 DEK domain-containing chromatin associated protein [Arabidopsis thaliana]	511	519	280	250
AT5G24890	no change	0.00390179441849447	0.99311512647824	0.9999957398723576	AT5G24890	--	GO:0005634,nucleus; GO:0006979,response to oxidative stress; GO:0008150,biological_process; GO:0045893,positive regulation of DNA-templated transcription; GO:0046686,response to cadmium ion;	--	CAA0404670.1 unnamed protein product [Arabidopsis thaliana]	63	49	61	35
AT4G17770	no change	-0.00192059384516024	0.9934698088669623	0.9999957398723576	AT4G17770	--	GO:0003824,catalytic activity; GO:0004805,trehalose-phosphatase activity; GO:0005991,trehalose metabolic process; GO:0005992,trehalose biosynthetic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0070413,trehalose metabolism in response to stress;	TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]; K16055;	NP_001329809.1 trehalose phosphatase/synthase 5 [Arabidopsis thaliana]	212	171	158	126
AT4G18840	no change	-0.00856411036619775	0.9934862279666024	0.9999957398723576	AT4G18840	--	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process;	--	NP_001319988.1 Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]	18	18	8	7
AT5G53900	no change	-0.08080324537568195	0.9936319751255004	0.9999957398723576	AT5G53900	--	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0016301,kinase activity; GO:0016310,phosphorylation;	--	NP_200201.3 Serine/threonine-protein kinase WNK (With No Lysine)-like protein [Arabidopsis thaliana]	18	6	14	1
AT5G45470	no change	-0.00402052184030488	0.993775336872898	0.9999957398723576	AT5G45470	--	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0016020,membrane;	--	NP_199360.1 transmembrane protein, putative (DUF594) [Arabidopsis thaliana]	98	64	33	42
AT3G27750	no change	0.00724552577090165	0.993927922895346	0.9999957398723576	AT3G27750	--	GO:0000373,Group II intron splicing; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0005515,protein binding; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:1990825,sequence-specific mRNA binding;	--	NP_189412.1 PPR containing protein [Arabidopsis thaliana]	20	19	10	9
AT1G67330	no change	-0.0113659551337264	0.9939685481510402	0.9999957398723576	AT1G67330	--	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006479,protein methylation; GO:0009827,plant-type cell wall modification; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0030775,glucuronoxylan 4-O-methyltransferase activity; GO:0045492,xylan biosynthetic process; GO:0071554,cell wall organization or biogenesis;	--	NP_176901.1 glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]	11	3	15	7
AT3G14650	no change	0.00978224113328352	0.9946345631524048	0.9999957398723576	AT3G14650	--	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding;	--	NP_188083.1 cytochrome P450, family 72, subfamily A, polypeptide 11 [Arabidopsis thaliana]	161	131	90	92
AT1G31910	no change	0.00180093033764672	0.9947177877746444	0.9999957398723576	AT1G31910	--	GO:0000166,nucleotide binding; GO:0004631,phosphomevalonate kinase activity; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0010142,farnesyl diphosphate biosynthetic process, mevalonate pathway; GO:0016126,sterol biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019287,isopentenyl diphosphate biosynthetic process, mevalonate pathway;	E2.7.4.2, mvaK2; phosphomevalonate kinase [EC:2.7.4.2]; K00938;	NP_174473.1 GHMP kinase family protein [Arabidopsis thaliana]	351	368	159	187
AT2G33800	no change	0.01870861531263301	0.9957894034941398	0.9999957398723576	AT2G33800	--	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005763,mitochondrial small ribosomal subunit; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009955,adaxial/abaxial pattern specification; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex;	RP-S5, MRPS5, rpsE; small subunit ribosomal protein S5; K02988;	NP_180936.1 Ribosomal protein S5 family protein [Arabidopsis thaliana]	359	325	200	179
AT5G24430	no change	0.01410457945096155	0.9960527689065772	0.9999957398723576	AT5G24430	--	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009506,plasmodesma; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity;	--	NP_197831.3 Calcium-dependent protein kinase (CDPK) family protein [Arabidopsis thaliana]	94	78	84	75
AT2G43160	no change	0.01008287012479058	0.9965746127099806	0.9999957398723576	AT2G43160	--	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005543,phospholipid binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006897,endocytosis; GO:0009504,cell plate; GO:0015031,protein transport; GO:0030125,clathrin vesicle coat; GO:0030136,clathrin-coated vesicle; GO:0030276,clathrin binding; GO:0031410,cytoplasmic vesicle;	EPN; epsin; K12471;	NP_001325306.1 ENTH/VHS family protein [Arabidopsis thaliana]	307	304	186	171
AT2G03390	no change	-0.00672732864828518	0.9966813763313248	0.9999957398723576	AT2G03390	--	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009840,chloroplastic endopeptidase Clp complex;	--	NP_001325260.1 uvrB/uvrC motif-containing protein [Arabidopsis thaliana]	66	42	47	27
AT4G00660	no change	0.00360036542428066	0.9967170665035296	0.9999957398723576	AT4G00660	--	GO:0000166,nucleotide binding; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0010494,cytoplasmic stress granule; GO:0016032,viral process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017148,negative regulation of translation; GO:0019048,modulation by virus of host process; GO:0033962,P-body assembly; GO:0034063,stress granule assembly; GO:0051028,mRNA transport;	DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]; K12614;	NP_191975.2 RNAhelicase-like 8 [Arabidopsis thaliana]	115	95	78	76
AT4G00500	no change	-0.00252119042001464	0.9967457643984114	0.9999957398723576	AT4G00500	--	GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process;	--	NP_191959.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]	73	30	9	25
AT1G69010	no change	0.0018810343802027	0.996821750442808	0.9999957398723576	AT1G69010	bHLH	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0042802,identical protein binding; GO:0046983,protein dimerization activity;	--	NP_177064.1 BES1-interacting Myc-like protein 2 [Arabidopsis thaliana]	53	51	38	13
AT1G07220	no change	-0.00208035528337813	0.9972907056442823	0.9999957398723576	AT1G07220	--	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; GO:0016740,transferase activity;	--	NP_172202.1 O-glucosyltransferase rumi-like protein (DUF821) [Arabidopsis thaliana]	107	87	58	53
AT2G23760	no change	0.00172032220414575	0.997315765102146	0.9999957398723576	AT2G23760	TALE	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009965,leaf morphogenesis; GO:0016020,membrane; GO:0048363,mucilage pectin metabolic process;	--	AAK43834.1 BEL1-like homeobox 4 [Arabidopsis thaliana]	40	29	37	30
AT1G47230	no change	-0.02888213366419911	0.9979189294312794	0.9999957398723576	AT1G47230	--	GO:0000079,regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0016538,cyclin-dependent protein serine/threonine kinase regulator activity; GO:0044772,mitotic cell cycle phase transition; GO:0051301,cell division;	CCNA; cyclin-A; K06627;	NP_175156.1 CYCLIN A3;4 [Arabidopsis thaliana]	15	18	8	12
AT5G53330	no change	-0.00192052163069433	0.9982429088097776	0.9999957398723576	AT5G53330	--	GO:0000813,ESCRT I complex; GO:0003746,translation elongation factor activity; GO:0005515,protein binding; GO:0006414,translational elongation; GO:0009536,plastid; GO:0043130,ubiquitin binding; GO:0043162,ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway;	--	NP_568790.1 Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]	32	58	29	23
AT5G24318	no change	0	0.9982988510683	0.9999957398723576	AT5G24318	--	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity;	--	NP_001031936.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	17	24	7	14
AT5G48220	no change	-0.00236207612147332	0.9984460541594268	0.9999957398723576	AT5G48220	--	GO:0000162,tryptophan biosynthetic process; GO:0004425,indole-3-glycerol-phosphate synthase activity; GO:0004640,phosphoribosylanthranilate isomerase activity; GO:0006568,tryptophan metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity;	trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]; K01609;	NP_001190488.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]	121	114	58	83
AT4G15260	no change	0.0124967574327286	0.9986452374408462	0.9999957398723576	AT4G15260	--	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity;	--	NP_193261.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]	16	22	3	4
AT4G16670	no change	-0.01099203789600178	0.9994626760667444	0.9999957398723576	AT4G16670	--	GO:0006892,post-Golgi vesicle-mediated transport;	--	NP_001328699.1 auxin canalization protein (DUF828) [Arabidopsis thaliana]	74	66	45	49
AT2G22010	no change	0.01130416710813619	0.9997324893960644	0.9999957398723576	AT2G22010	--	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0009615,response to virus; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0030163,protein catabolic process; GO:0046872,metal ion binding; GO:0051603,proteolysis involved in protein catabolic process; GO:0051726,regulation of cell cycle; GO:0061630,ubiquitin protein ligase activity; GO:2000060,positive regulation of ubiquitin-dependent protein catabolic process;	--	NP_001189573.1 related to KPC1 [Arabidopsis thaliana]	146	147	133	107
AT2G18270	no change	0.01867288012810064	0.9997646823574862	0.9999957398723576	AT2G18270	--	--	--	NP_179419.1 hypothetical protein AT2G18270 [Arabidopsis thaliana]	24	5	11	0
AT4G29220	no change	0	0.9998770454768332	0.9999957398723576	AT4G29220	--	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0003872,6-phosphofructokinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006002,fructose 6-phosphate metabolic process; GO:0006096,glycolytic process; GO:0008152,metabolic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061615,glycolytic process through fructose-6-phosphate;	pfkA, PFK; 6-phosphofructokinase 1 [EC:2.7.1.11]; K00850;	OAO97680.1 PFK1 [Arabidopsis thaliana]	100	108	84	68
AT1G79510	no change	-0.05329916859482253	0.999970683489826	0.9999957398723576	AT1G79510	--	GO:0004930,G protein-coupled receptor activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0007189,adenylate cyclase-activating G protein-coupled receptor signaling pathway; GO:0019222,regulation of metabolic process;	--	NP_565211.1 hypothetical protein (DUF2358) [Arabidopsis thaliana]	11	33	17	6
AT5G67230	no change	-0.01219450699890689	0.9999957398723576	0.9999957398723576	AT5G67230	--	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005975,carbohydrate metabolic process; GO:0009834,plant-type secondary cell wall biogenesis; GO:0010417,glucuronoxylan biosynthetic process; GO:0015018,galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042285,xylosyltransferase activity; GO:0071555,cell wall organization;	--	NP_201524.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]	40	33	27	37