ID	log2FoldChange	lfcSE	pvalue	padj	degType	wt_1	wt_2	h3_1	h3_2	Name	GO	KEGG	Nr
AT1G01080	-1.0118660548684	0.433852206924623	0.0196858169563429	0.147822372483919	Down	24.17	29.08	10.99	16.01	AT1G01080	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex; 	--	NP_171616.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]
AT1G01280	-0.889390918874788	0.286101677428282	0.00187942127465587	0.0240849389587873	Down	34.69	41.99	23.77	18.11	AT1G01280	GO:0002933,lipid hydroxylation; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0009555,pollen development; GO:0010208,pollen wall assembly; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0048653,anther development; GO:0051791,medium-chain fatty acid metabolic process; GO:0051792,medium-chain fatty acid biosynthetic process; GO:0052722,fatty acid in-chain hydroxylase activity; GO:0080110,sporopollenin biosynthetic process; 	--	NP_171635.1 cytochrome P450, family 703, subfamily A, polypeptide 2 [Arabidopsis thaliana]
AT1G01430	0.712936950318293	0.310197128763937	0.0215427239459751	0.157749753998024	Up	24.10	17.84	30.52	39.55	AT1G01430	GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016413,O-acetyltransferase activity; GO:0016740,transferase activity; 	--	NP_171650.2 TRICHOME BIREFRINGENCE-LIKE 25 [Arabidopsis thaliana]
AT1G01570	1.69234001990402	0.538636164646102	0.00167856361030877	0.0220812105894807	Up	3.68	3.20	11.25	11.34	AT1G01570	GO:0005783,endoplasmic reticulum; GO:0008375,acetylglucosaminyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; 	--	NP_001322080.1 transferring glycosyl group transferase (DUF604) [Arabidopsis thaliana]
AT1G01790	-0.594229799820071	0.296097454576316	0.0447632547390769	0.257913690217487	Down	14.19	13.23	10.74	7.63	AT1G01790	GO:0005576,extracellular region; GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0008324,cation transmembrane transporter activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010109,regulation of photosynthesis; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0015386,potassium:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport; GO:0071805,potassium ion transmembrane transport; GO:0098655,cation transmembrane transport; GO:1902600,proton transmembrane transport; 	--	NP_001320631.1 K+ efflux antiporter 1 [Arabidopsis thaliana]
AT1G02050	-1.32410352510005	0.182582740427059	4.10437847025263e-13	5.72076572173977e-11	Down	135.29	140.24	55.96	55.87	AT1G02050	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0008152,metabolic process; GO:0009058,biosynthetic process; GO:0009813,flavonoid biosynthetic process; GO:0010584,pollen exine formation; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0030639,polyketide biosynthetic process; GO:0080110,sporopollenin biosynthetic process; GO:0090439,tetraketide alpha-pyrone synthase activity; 	--	NP_171707.1 Chalcone and stilbene synthase family protein [Arabidopsis thaliana]
AT1G02070	1.04909409698632	0.485766839162147	0.0307985397777431	0.202847427590241	Up	34.91	20.16	40.90	75.59	AT1G02070	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_563644.1 zinc ion-binding protein [Arabidopsis thaliana]
AT1G02160	0.843041024273069	0.404665869585265	0.0372237475937352	0.229003528264085	Up	48.74	43.21	86.06	81.52	AT1G02160	GO:0008150,biological_process; 	--	NP_171718.1 Cox19 family protein (CHCH motif) [Arabidopsis thaliana]
AT1G02410	1.11975575655966	0.502744346167141	0.0259281240409631	0.180208645921752	Up	10.30	8.94	25.78	16.57	AT1G02410	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0008150,biological_process; GO:0009846,pollen germination; GO:0010101,post-embryonic root morphogenesis; GO:0016020,membrane; GO:0043621,protein self-association; GO:1904960,positive regulation of cytochrome-c oxidase activity; 	COX11, ctaG; cytochrome c oxidase assembly protein subunit 11; K02258; 	NP_001321510.1 cytochrome c oxidase assembly protein CtaG / Cox11 family [Arabidopsis thaliana]
AT1G02500	-0.761689681137346	0.130923841892694	5.96245858781932e-09	3.72132743392398e-07	Down	274.33	292.36	165.87	173.97	AT1G02500	GO:0000166,nucleotide binding; GO:0004478,methionine adenosyltransferase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006556,S-adenosylmethionine biosynthetic process; GO:0006730,one-carbon metabolic process; GO:0009505,plant-type cell wall; GO:0009693,ethylene biosynthetic process; GO:0016740,transferase activity; GO:0046872,metal ion binding; 	metK; S-adenosylmethionine synthetase [EC:2.5.1.6]; K00789; 	NP_171751.1 S-adenosylmethionine synthetase 1 [Arabidopsis thaliana]
AT1G02520	-1.06845096431094	0.52379823274129	0.04136885564259	0.245432920725534	Down	4.95	3.76	1.76	2.49	AT1G02520	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; 	ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]; K05658; 	NP_001322407.1 P-glycoprotein 11 [Arabidopsis thaliana]
AT1G02630	-3.63414462007832	1.49586985790022	0.0151216503009062	1	Down	3.00	4.62	0.58	0.00	AT1G02630	GO:0005337,nucleoside transmembrane transporter activity; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0071702,organic substance transport; GO:0071705,nitrogen compound transport; GO:1901642,nucleoside transmembrane transport; 	SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3; K15014; 	NP_171763.1 Nucleoside transporter family protein [Arabidopsis thaliana]
AT1G02640	-0.655268015780691	0.238535070563028	0.00601337739520297	0.0603527075950589	Down	31.48	31.37	19.89	20.68	AT1G02640	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0031222,arabinan catabolic process; GO:0045493,xylan catabolic process; GO:0046556,alpha-L-arabinofuranosidase activity; 	--	NP_563659.1 beta-xylosidase 2 [Arabidopsis thaliana]
AT1G02780	0.656785986233821	0.1094877002546	1.98879737251858e-09	1.38424606894599e-07	Up	812.20	923.83	1480.06	1300.09	AT1G02780	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L19e, RPL19; large subunit ribosomal protein L19e; K02885; 	NP_171777.1 Ribosomal protein L19e family protein [Arabidopsis thaliana]
AT1G03130	-1.05477467355626	0.189670429707403	2.68092103213473e-08	1.41105223507831e-06	Down	242.29	310.26	135.53	134.73	AT1G03130	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; 	psaD; photosystem I subunit II; K02692; 	NP_171812.1 photosystem I subunit D-2 [Arabidopsis thaliana]
AT1G03360	1.25369600510418	0.342115292831263	0.00024778116642362	0.00465715965073486	Up	15.96	19.13	46.32	38.50	AT1G03360	GO:0000176,nuclear exosome (RNase complex); GO:0000177,cytoplasmic exosome (RNase complex); GO:0000178,exosome (RNase complex); GO:0000460,maturation of 5.8S rRNA; GO:0000467,exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006364,rRNA processing; GO:0034427,nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'; GO:0034475,U4 snRNA 3'-end processing; GO:0043229,intracellular organelle; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0060149,negative regulation of post-transcriptional gene silencing; GO:0071034,CUT catabolic process; GO:0071035,nuclear polyadenylation-dependent rRNA catabolic process; GO:0071038,nuclear polyadenylation-dependent tRNA catabolic process; GO:0071051,polyadenylation-dependent snoRNA 3'-end processing; 	RRP4, EXOSC2; exosome complex component RRP4; K03679; 	NP_171835.1 ribosomal RNA processing 4 [Arabidopsis thaliana]
AT1G03390	-3.3719108112199	1.28893817002645	0.0088956742059984	1	Down	3.55	4.46	0.73	0.00	AT1G03390	GO:0016740,transferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; 	HHT1; omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188]; K15400; 	NP_171838.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]
AT1G03475	-0.714870076256387	0.155469035577087	4.26257349665328e-06	0.000143688109309739	Down	172.34	189.41	110.45	113.59	AT1G03475	GO:0004109,coproporphyrinogen oxidase activity; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0006783,heme biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0042803,protein homodimerization activity; GO:0048046,apoplast; 	CPOX, hemF; coproporphyrinogen III oxidase [EC:1.3.3.3]; K00228; 	NP_171847.4 Coproporphyrinogen III oxidase [Arabidopsis thaliana]
AT1G03530	1.51032308515906	0.37616954077412	5.94442008486503e-05	0.00142356237746623	Up	4.97	6.53	13.32	20.01	AT1G03530	GO:0000493,box H/ACA snoRNP assembly; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005732,sno(s)RNA-containing ribonucleoprotein complex; GO:0009506,plasmodesma; GO:0042254,ribosome biogenesis; 	--	NP_171852.2 nuclear assembly factor 1 [Arabidopsis thaliana]
AT1G03680	-0.985959850152324	0.158339586602382	4.75848920727239e-10	3.6752178589719e-08	Down	403.93	380.54	195.59	207.27	AT1G03680	GO:0004857,enzyme inhibitor activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0006109,regulation of carbohydrate metabolic process; GO:0008047,enzyme activator activity; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0015035,protein-disulfide reductase activity; GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0043085,positive regulation of catalytic activity; GO:0043086,negative regulation of catalytic activity; GO:0048046,apoplast; GO:1901149,salicylic acid binding; 	trxA; thioredoxin 1; K03671; 	NP_849585.1 thioredoxin M-type 1 [Arabidopsis thaliana]
AT1G03860	0.774190604958483	0.215984399987996	0.000337757375562912	0.00599414704787162	Up	95.24	66.40	145.40	135.53	AT1G03860	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0007005,mitochondrion organization; GO:0009505,plant-type cell wall; GO:0016020,membrane; 	--	NP_171882.1 prohibitin 2 [Arabidopsis thaliana]
AT1G03870	-1.56269665087676	0.594182337219551	0.00853860923398907	0.0788932894403144	Down	20.47	18.00	6.80	6.41	AT1G03870	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009834,plant-type secondary cell wall biogenesis; GO:0016020,membrane; GO:0099503,secretory vesicle; 	--	NP_563692.1 FASCICLIN-like arabinoogalactan 9 [Arabidopsis thaliana]
AT1G04050	-2.38223091770994	1.03677690111454	0.0215772967405788	1	Down	2.66	2.80	0.31	0.79	AT1G04050	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0006325,chromatin organization; GO:0008168,methyltransferase activity; GO:0008270,zinc ion binding; GO:0016740,transferase activity; GO:0018024,histone-lysine N-methyltransferase activity; GO:0031047,gene silencing by RNA; GO:0032259,methylation; GO:0034968,histone lysine methylation; GO:0042802,identical protein binding; GO:0046872,metal ion binding; 	--	NP_001320725.1 histone-lysine N-methyltransferase SUVR2-like protein [Arabidopsis thaliana]
AT1G04210	0.625640535167831	0.281157367764175	0.0260656286982465	0.18084123266317	Up	12.98	14.58	16.07	27.28	AT1G04210	GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0018105,peptidyl-serine phosphorylation; GO:0018107,peptidyl-threonine phosphorylation; 	--	NP_171917.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]
AT1G04480	0.875704768095917	0.114900307449185	2.5087868461544e-14	4.64500012336497e-12	Up	870.69	801.74	1453.50	1666.54	AT1G04480	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005730,nucleolus; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L23e, RPL23; large subunit ribosomal protein L23e; K02894; 	NP_180895.1 Ribosomal protein L14p/L23e family protein [Arabidopsis thaliana]
AT1G04750	-0.632936402251027	0.239426448588519	0.00820410259063959	0.076693212235783	Down	106.85	115.49	69.02	76.90	AT1G04750	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005886,plasma membrane; GO:0009504,cell plate; GO:0009506,plasmodesma; GO:0009920,cell plate formation involved in plant-type cell wall biogenesis; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031901,early endosome membrane; GO:0034976,response to endoplasmic reticulum stress; GO:0072659,protein localization to plasma membrane; 	--	NP_171967.1 vesicle-associated membrane protein 721 [Arabidopsis thaliana]
AT1G04900	0.956005771426477	0.41556009260729	0.0214185777519074	0.157124457133301	Up	11.11	8.14	19.04	18.93	AT1G04900	GO:0005739,mitochondrion; GO:0006479,protein methylation; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0035243,protein-arginine omega-N symmetric methyltransferase activity; 	--	NP_563721.1 NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Arabidopsis thaliana]
AT1G05360	-1.14602670925231	0.562018608194241	0.0414374623040856	0.245432920725534	Down	9.60	12.75	5.22	5.03	AT1G05360	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0010256,endomembrane system organization; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; 	--	NP_563735.1 vacuole membrane-like protein [Arabidopsis thaliana]
AT1G05577	-2.86095450603038	1.38182945455576	0.038413899485877	1	Down	5.86	1.61	0.30	0.78	AT1G05577	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0007049,cell cycle; GO:0016020,membrane; GO:0016324,apical plasma membrane; GO:0031234,extrinsic component of cytoplasmic side of plasma membrane; GO:0042803,protein homodimerization activity; GO:0051258,protein polymerization; GO:0051301,cell division; GO:0051302,regulation of cell division; GO:0090708,specification of plant organ axis polarity; GO:1905392,plant organ morphogenesis; GO:2000067,regulation of root morphogenesis; 	--	NP_683277.1 UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]
AT1G05680	2.1582638510307	0.350964756971951	7.77191004002471e-10	5.80786409918714e-08	Up	6.54	13.61	45.84	45.23	AT1G05680	GO:0008194,UDP-glycosyltransferase activity; GO:0010016,shoot system morphogenesis; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0042631,cellular response to water deprivation; GO:0052638,indole-3-butyrate beta-glucosyltransferase activity; GO:0070301,cellular response to hydrogen peroxide; GO:0071215,cellular response to abscisic acid stimulus; GO:0071475,cellular hyperosmotic salinity response; GO:0080024,indolebutyric acid metabolic process; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; 	--	NP_172059.1 Uridine diphosphate glycosyltransferase 74E2 [Arabidopsis thaliana]
AT1G06260	-1.27785870728274	0.215296741053509	2.93242582733762e-09	1.97699686891974e-07	Down	106.25	127.51	50.36	47.50	AT1G06260	GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; 	--	NP_563764.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]
AT1G06400	0.849802830942057	0.323277842129916	0.00857100922621101	0.0791096498892467	Up	34.19	40.35	57.54	79.30	AT1G06400	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005576,extracellular region; GO:0005768,endosome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009733,response to auxin; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0042546,cell wall biogenesis; 	--	NP_172128.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]
AT1G06520	-0.704022919772773	0.250591888487034	0.00496277412933313	0.0515723233576489	Down	37.32	39.99	22.65	25.66	AT1G06520	GO:0004366,glycerol-3-phosphate O-acyltransferase activity; GO:0005739,mitochondrion; GO:0006629,lipid metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0010143,cutin biosynthetic process; GO:0016020,membrane; GO:0016024,CDP-diacylglycerol biosynthetic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016791,phosphatase activity; GO:0048235,pollen sperm cell differentiation; GO:0090447,glycerol-3-phosphate 2-O-acyltransferase activity; GO:0102420,sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity; 	GPAT; glycerol-3-phosphate acyltransferase [EC:2.3.1.15 2.3.1.198]; K13508; 	NP_563768.1 glycerol-3-phosphate acyltransferase 1 [Arabidopsis thaliana]
AT1G06560	1.02377186354413	0.428760912662498	0.0169520845797941	0.133602674213689	Up	6.25	6.58	11.62	14.94	AT1G06560	GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; 	--	NP_172143.3 NOL1/NOP2/sun family protein [Arabidopsis thaliana]
AT1G06690	-0.911603190470976	0.301061826635593	0.00246210615516762	0.0298557447261528	Down	40.08	47.69	22.62	24.87	AT1G06690	GO:0004033,aldo-keto reductase (NADP) activity; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0016491,oxidoreductase activity; 	--	NP_563770.1 NAD(P)-linked oxidoreductase superfamily protein [Arabidopsis thaliana]
AT1G06720	1.23010457228992	0.197725022331509	4.93085902826074e-10	3.77575964478855e-08	Up	15.58	17.55	42.93	35.91	AT1G06720	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000479,endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0016787,hydrolase activity; GO:0030686,90S preribosome; GO:0034511,U3 snoRNA binding; GO:0042254,ribosome biogenesis; 	BMS1; ribosome biogenesis protein BMS1; K14569; 	NP_001322900.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT1G06770	1.59171236900241	0.788785487428159	0.0435987541149125	1	Up	2.89	1.31	4.17	8.83	AT1G06770	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0009414,response to water deprivation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0051865,protein autoubiquitination; 	--	NP_973775.1 DREB2A-interacting protein 1 [Arabidopsis thaliana]
AT1G06820	0.666179597150689	0.271244860684201	0.0140489958729113	0.115799198540508	Up	23.14	22.47	28.91	44.88	AT1G06820	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009662,etioplast organization; GO:0016020,membrane; GO:0016116,carotenoid metabolic process; GO:0016117,carotenoid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016853,isomerase activity; GO:0031969,chloroplast membrane; GO:0046608,carotenoid isomerase activity; 	crtISO, crtH; prolycopene isomerase [EC:5.2.1.13]; K09835; 	NP_172167.2 carotenoid isomerase [Arabidopsis thaliana]
AT1G06900	0.627210570732159	0.244370514257252	0.0102689848338356	0.0913821785249148	Up	15.16	17.00	21.95	28.64	AT1G06900	GO:0004222,metalloendopeptidase activity; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	--	KAG7645369.1 Peptidase M16 C-terminal [Arabidopsis thaliana x Arabidopsis arenosa]
AT1G07020	0.870703312358345	0.312401062514927	0.00531766483220157	0.0542807874229351	Up	51.71	52.20	97.28	95.75	AT1G07020	GO:0008150,biological_process; 	--	NP_563775.1 hypothetical protein AT1G07020 [Arabidopsis thaliana]
AT1G07050	0.987491606660698	0.421362133364119	0.0191001835814353	0.144562402274377	Up	17.65	21.05	41.64	36.15	AT1G07050	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; 	--	NP_001320785.1 CCT motif family protein [Arabidopsis thaliana]
AT1G07070	1.05127850293838	0.400178940586111	0.00861360039413886	0.0794436527057937	Up	39.39	55.45	73.66	126.69	AT1G07070	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0042273,ribosomal large subunit biogenesis; GO:1990904,ribonucleoprotein complex; 	RP-L35Ae, RPL35A; large subunit ribosomal protein L35Ae; K02917; 	NP_172188.1 Ribosomal protein L35Ae family protein [Arabidopsis thaliana]
AT1G07180	1.03681187220893	0.305007073240009	0.000675574935743544	0.0107580321924245	Up	13.91	16.46	31.04	32.26	AT1G07180	GO:0003954,NADH dehydrogenase activity; GO:0003959,NADPH dehydrogenase activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005759,mitochondrial matrix; GO:0005777,peroxisome; GO:0006116,NADH oxidation; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0050136,NADH dehydrogenase (quinone) activity; GO:0071482,cellular response to light stimulus; 	ndh; NADH:ubiquinone reductase (H+-translocating) [EC:7.1.1.2]; K03885; 	NP_563783.1 alternative NAD(P)H dehydrogenase 1 [Arabidopsis thaliana]
AT1G07270	1.98301280667461	0.967933266054731	0.0404906581651379	1	Up	1.22	0.67	2.86	4.81	AT1G07270	GO:0003688,DNA replication origin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0006270,DNA replication initiation; GO:0007049,cell cycle; GO:0033314,mitotic DNA replication checkpoint signaling; GO:0051301,cell division; 	CDC6; cell division control protein 6; K02213; 	NP_172207.2 Cell division control, Cdc6 [Arabidopsis thaliana]
AT1G07320	-0.960514586945091	0.171289581351578	2.0521285007389e-08	1.12143850447868e-06	Down	227.71	260.52	115.38	140.20	AT1G07320	GO:0000311,plastid large ribosomal subunit; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009547,plastid ribosome; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L4, MRPL4, rplD; large subunit ribosomal protein L4; K02926; 	NP_563786.1 ribosomal protein L4 [Arabidopsis thaliana]
AT1G07340	-0.996710931952943	0.4201271652774	0.0176728046125057	0.137448991359331	Down	18.47	15.14	9.24	7.82	AT1G07340	GO:0005515,protein binding; GO:0008643,carbohydrate transport; GO:0009555,pollen development; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_172214.5 sugar transporter 2 [Arabidopsis thaliana]
AT1G07400	-1.34313215390433	0.578305742288941	0.0202044411808503	0.150441832442046	Down	25.21	36.94	12.10	12.81	AT1G07400	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0006950,response to stress; GO:0006979,response to oxidative stress; GO:0009408,response to heat; GO:0009651,response to salt stress; GO:0042542,response to hydrogen peroxide; GO:0043621,protein self-association; GO:0051082,unfolded protein binding; GO:0051259,protein complex oligomerization; GO:0071456,cellular response to hypoxia; 	HSP20; HSP20 family protein; K13993; 	NP_172220.1 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]
AT1G07615	1.60339562957498	0.572256017390556	0.00508049588431519	0.0524696937975986	Up	3.48	3.30	8.42	12.59	AT1G07615	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005739,mitochondrion; GO:0042254,ribosome biogenesis; GO:0097159,organic cyclic compound binding; GO:1901363,heterocyclic compound binding; 	--	NP_001077476.1 GTP-binding protein Obg/CgtA [Arabidopsis thaliana]
AT1G07620	-4.81078007015836	2.23601013633103	0.0314366055405297	1	Down	1.35	0.89	0.00	0.00	AT1G07620	GO:0003674,molecular_function; 	--	NP_001322857.1 GTP-binding protein Obg/CgtA [Arabidopsis thaliana]
AT1G07670	-0.663362188073662	0.27706544343459	0.0166546795258012	0.131929310036759	Down	22.94	27.00	20.55	11.30	AT1G07670	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005783,endoplasmic reticulum; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0006874,cellular calcium ion homeostasis; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity; 	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537; 	NP_001321027.1 endomembrane-type CA-ATPase 4 [Arabidopsis thaliana]
AT1G07770	1.0085822722766	0.146563209366215	5.92041657348739e-12	6.80025625871399e-10	Up	312.39	304.68	625.95	635.82	AT1G07770	GO:0000325,plant-type vacuole; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S15Ae, RPS15A; small subunit ribosomal protein S15Ae; K02957; 	NP_001318947.1 ribosomal protein S15A [Arabidopsis thaliana]
AT1G07840	0.619374610199992	0.284482096027331	0.0294655983161086	0.198097239646033	Up	41.92	38.88	76.77	48.90	AT1G07840	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003674,molecular_function; GO:0005730,nucleolus; GO:0032040,small-subunit processome; 	--	NP_563798.1 Sas10/Utp3/C1D family [Arabidopsis thaliana]
AT1G07940	1.11358743642048	0.196327553549011	1.41066318638569e-08	8.15661645443813e-07	Up	47.55	59.13	128.73	105.40	AT1G07940	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006414,translational elongation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0048471,perinuclear region of cytoplasm; 	EEF1A; elongation factor 1-alpha; K03231; 	EFH68683.1 T6D22.2 [Arabidopsis lyrata subsp. lyrata]
AT1G08135	-4.92725114124814	2.18467336535985	0.0241099886255986	1	Down	0.69	1.08	0.00	0.00	AT1G08135	GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006885,regulation of pH; GO:0012505,endomembrane system; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; 	--	NP_849610.2 cation/H+ exchanger 6B [Arabidopsis thaliana]
AT1G08160	0.61085231250172	0.294673204605028	0.0381739347218379	0.232601609054512	Up	48.90	42.14	65.36	76.21	AT1G08160	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_849612.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]
AT1G08200	-0.619933610841486	0.136865452080933	5.91202744370455e-06	0.000192996580103039	Down	235.69	241.00	164.69	150.17	AT1G08200	GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016831,carboxy-lyase activity; GO:0048046,apoplast; GO:0071555,cell wall organization; 	AXS; UDP-apiose/xylose synthase; K12449; 	NP_563807.1 UDP-D-apiose/UDP-D-xylose synthase 2 [Arabidopsis thaliana]
AT1G08410	0.832347036142762	0.231929818153744	0.000332218371155189	0.00592121967554615	Up	24.22	28.81	48.81	47.06	AT1G08410	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006364,rRNA processing; GO:0016787,hydrolase activity; GO:0042254,ribosome biogenesis; GO:0043022,ribosome binding; GO:0048366,leaf development; GO:0048825,cotyledon development; GO:0090070,positive regulation of ribosome biogenesis; GO:2000012,regulation of auxin polar transport; 	LSG1; large subunit GTPase 1 [EC:3.6.1.-]; K14539; 	NP_172317.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT1G08465	1.02358730524167	0.449992896945824	0.0229254716461201	0.164959672720487	Up	21.53	18.56	50.47	32.05	AT1G08465	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007275,multicellular organism development; GO:0010158,abaxial cell fate specification; GO:0032502,developmental process; GO:0045165,cell fate commitment; GO:0046872,metal ion binding; 	--	NP_001077490.1 Plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]
AT1G08700	-0.893642346829832	0.413539661324972	0.0306984891387405	0.202459928506087	Down	18.58	17.96	8.92	11.15	AT1G08700	GO:0000139,Golgi membrane; GO:0004175,endopeptidase activity; GO:0004190,aspartic-type endopeptidase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005798,Golgi-associated vesicle; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0007219,Notch signaling pathway; GO:0008233,peptidase activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016485,protein processing; GO:0016787,hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; 	PSEN1, PS1; presenilin 1 [EC:3.4.23.-]; K04505; 	NP_172346.1 Presenilin-1 [Arabidopsis thaliana]
AT1G08910	0.944022412190697	0.464648300348626	0.0421848076055358	0.248010681680887	Up	3.86	4.03	7.59	7.84	AT1G08910	GO:0008270,zinc ion binding; 	PIAS1; E3 SUMO-protein ligase PIAS1 [EC:2.3.2.-]; K04706; 	NP_172366.3 zinc ion binding protein [Arabidopsis thaliana]
AT1G09250	0.713392842738542	0.328438367453404	0.0298499889211351	0.199458295814599	Up	37.55	36.73	69.22	54.23	AT1G09250	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity; 	--	NP_563839.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]
AT1G09340	-1.23504475391648	0.180036306516226	6.88720853894064e-12	7.6281983862106e-10	Down	130.35	134.35	57.33	56.93	AT1G09340	GO:0000272,polysaccharide catabolic process; GO:0000325,plant-type vacuole; GO:0000427,plastid-encoded plastid RNA polymerase complex; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005975,carbohydrate metabolic process; GO:0005996,monosaccharide metabolic process; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010297,heteropolysaccharide binding; GO:0010319,stromule; GO:0010468,regulation of gene expression; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0042631,cellular response to water deprivation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast; 	--	NP_001322308.1 chloroplast RNA binding protein [Arabidopsis thaliana]
AT1G09590	1.29598988800237	0.154626373102215	5.22891693111272e-17	1.44143810067674e-14	Up	268.84	346.46	831.69	701.99	AT1G09590	GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L21e, RPL21; large subunit ribosomal protein L21e; K02889; 	NP_563847.1 Translation protein SH3-like family protein [Arabidopsis thaliana]
AT1G09750	-0.737846885712721	0.188938827923929	9.41413588806424e-05	0.00204881325774451	Down	94.41	94.80	60.49	54.63	AT1G09750	GO:0000166,nucleotide binding; GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009627,systemic acquired resistance; GO:0016787,hydrolase activity; GO:0043067,regulation of programmed cell death; GO:0048046,apoplast; GO:0099503,secretory vesicle; 	--	NP_563851.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT1G09760	0.922180814250263	0.266760058156934	0.000546291011026565	0.00899965470356512	Up	44.36	41.54	78.29	87.34	AT1G09760	GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0015030,Cajal body; GO:0030620,U2 snRNA binding; GO:1990904,ribonucleoprotein complex; 	SNRPA1; U2 small nuclear ribonucleoprotein A'; K11092; 	NP_172447.1 U2 small nuclear ribonucleoprotein A [Arabidopsis thaliana]
AT1G09770	0.720227879029738	0.179249636990858	5.8690255154174e-05	0.00141644477662943	Up	41.77	33.62	62.96	63.32	AT1G09770	GO:0000398,mRNA splicing, via spliceosome; GO:0000974,Prp19 complex; GO:0002376,immune system process; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006281,DNA repair; GO:0006355,regulation of DNA-templated transcription; GO:0006397,mRNA processing; GO:0006952,defense response; GO:0006974,cellular response to DNA damage stimulus; GO:0007049,cell cycle; GO:0008380,RNA splicing; GO:0042742,defense response to bacterium; GO:0045087,innate immune response; GO:0050832,defense response to fungus; 	CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1; K12860; 	NP_172448.1 cell division cycle 5 [Arabidopsis thaliana]
AT1G09780	-0.96455426425031	0.137227796194478	2.08235422772148e-12	2.58316041948849e-10	Down	195.80	223.82	106.44	112.21	AT1G09780	GO:0003824,catalytic activity; GO:0004619,phosphoglycerate mutase activity; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005740,mitochondrial envelope; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006007,glucose catabolic process; GO:0006096,glycolytic process; GO:0009409,response to cold; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009555,pollen development; GO:0009637,response to blue light; GO:0009737,response to abscisic acid; GO:0010037,response to carbon dioxide; GO:0010118,stomatal movement; GO:0016853,isomerase activity; GO:0030145,manganese ion binding; GO:0044262,cellular carbohydrate metabolic process; GO:0046537,2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity; GO:0046872,metal ion binding; 	gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]; K15633; 	NP_563852.1 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [Arabidopsis thaliana]
AT1G09880	-1.14318171056788	0.508667986001724	0.0246143144888819	0.173884152183701	Down	10.09	7.96	5.37	2.84	AT1G09880	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0016829,lyase activity; GO:0030246,carbohydrate binding; GO:0102210,rhamnogalacturonan endolyase activity; GO:1901575,organic substance catabolic process; 	RGL4, rhiE; rhamnogalacturonan endolyase [EC:4.2.2.23]; K18195; 	NP_001322798.1 Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]
AT1G10180	0.641542714318917	0.265168598463521	0.0155471328260662	0.124668508537395	Up	16.84	14.83	24.69	25.54	AT1G10180	GO:0000145,exocyst; GO:0006887,exocytosis; GO:0006893,Golgi to plasma membrane transport; GO:0008104,protein localization; GO:0060321,acceptance of pollen; 	--	NP_563863.1 LOW protein: exocyst complex component-like protein [Arabidopsis thaliana]
AT1G10395	1.61500251914284	0.541279583730597	0.00284808844169744	0.0334252952878494	Up	23.24	20.44	58.92	77.47	AT1G10395	--	--	NP_001320683.1 hypothetical protein AT1G10395 [Arabidopsis thaliana]
AT1G10490	0.854719599172471	0.216407597353837	7.82877157422245e-05	0.00178521895915863	Up	17.61	16.10	30.50	31.48	AT1G10490	GO:0000049,tRNA binding; GO:0000154,rRNA modification; GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0008033,tRNA processing; GO:0008080,N-acetyltransferase activity; GO:0016072,rRNA metabolic process; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0034470,ncRNA processing; GO:0042274,ribosomal small subunit biogenesis; GO:0043412,macromolecule modification; GO:0044238,primary metabolic process; GO:0051391,tRNA acetylation; GO:1904812,rRNA acetylation involved in maturation of SSU-rRNA; GO:1990883,rRNA cytidine N-acetyltransferase activity; 	NAT10, KRE33; N-acetyltransferase 10 [EC:2.3.1.-]; K14521; 	NP_001318971.1 GNAT acetyltransferase (DUF699) [Arabidopsis thaliana]
AT1G10500	-0.596656064760748	0.282399930565187	0.0346174374591739	0.219096587592374	Down	87.16	99.59	64.63	60.72	AT1G10500	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0030674,protein-macromolecule adaptor activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; 	--	NP_172520.1 chloroplast-localized ISCA-like protein [Arabidopsis thaliana]
AT1G10820	1.76725611034956	0.523380425162807	0.00073382711466132	0.0114648933971961	Up	8.14	5.97	24.32	24.57	AT1G10820	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_172552.2 hypothetical protein (DUF3755) [Arabidopsis thaliana]
AT1G10960	-0.760176794398331	0.191314942193739	7.08445750702949e-05	0.00165504134415633	Down	555.59	496.58	246.10	387.23	AT1G10960	GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; 	petF; ferredoxin; K02639; 	NP_172565.1 ferredoxin 1 [Arabidopsis thaliana]
AT1G11125	1.75376479701659	0.824808246484147	0.0334808080209625	1	Up	2.06	3.87	6.77	13.59	AT1G11125	GO:0003674,molecular_function; 	--	NP_001184959.1 hypothetical protein AT1G11125 [Arabidopsis thaliana]
AT1G11240	1.30446977021276	0.411723907004185	0.00153326910158327	0.0206516864333773	Up	17.48	18.36	45.33	44.60	AT1G11240	GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; 	--	NP_563886.1 ribosomal RNA-processing protein [Arabidopsis thaliana]
AT1G11260	0.679988835350566	0.141892561098057	1.64896822685634e-06	6.1612803777569e-05	Up	101.99	96.17	157.43	165.34	AT1G11260	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0009506,plasmodesma; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_172592.1 sugar transporter 1 [Arabidopsis thaliana]
AT1G11475	0.624561169171015	0.22749111770741	0.00604314719840751	0.0605046335724336	Up	267.91	267.04	476.49	359.50	AT1G11475	GO:0000418,RNA polymerase IV complex; GO:0000419,RNA polymerase V complex; GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005665,RNA polymerase II, core complex; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0006360,transcription by RNA polymerase I; GO:0006366,transcription by RNA polymerase II; GO:0008270,zinc ion binding; GO:0042797,tRNA transcription by RNA polymerase III; GO:0046872,metal ion binding; 	RPB10, POLR2L; DNA-directed RNA polymerases I, II, and III subunit RPABC5; K03007; 	NP_849640.1 RNA polymerases N / 8 kDa subunit [Arabidopsis thaliana]
AT1G11610	-1.96571035340176	0.889811654100588	0.0271655426445756	1	Down	7.34	2.80	1.51	1.11	AT1G11610	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	CYP71A13; indoleacetaldoxime dehydratase [EC:4.99.1.6]; K11868; 	KAG7596690.1 Cytochrome P450 superfamily [Arabidopsis suecica]
AT1G11770	-0.699537917861698	0.273914385142564	0.0106537282433144	0.0939967986190005	Down	32.72	39.16	23.88	21.00	AT1G11770	GO:0000166,nucleotide binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0016491,oxidoreductase activity; GO:0016899,oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding; 	--	NP_172642.3 FAD-binding Berberine family protein [Arabidopsis thaliana]
AT1G11860	-0.632524058436358	0.121576757342369	1.96442819730379e-07	8.73431246865718e-06	Down	328.96	306.29	216.21	199.85	AT1G11860	GO:0003729,mRNA binding; GO:0004047,aminomethyltransferase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0006546,glycine catabolic process; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; 	gcvT, AMT; aminomethyltransferase [EC:2.1.2.10]; K00605; 	NP_001318983.1 Glycine cleavage T-protein family [Arabidopsis thaliana]
AT1G12080	-0.9455435728037	0.162963854249607	6.54631319776597e-09	3.9807360401121e-07	Down	650.06	821.92	349.59	428.61	AT1G12080	GO:0005576,extracellular region; GO:0005829,cytosol; 	--	NP_849650.1 Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]
AT1G12090	-0.784432461160557	0.110095949279973	1.04088769948699e-12	1.38840988302539e-10	Down	1432.34	1433.07	808.57	883.34	AT1G12090	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_172673.1 extensin-like protein [Arabidopsis thaliana]
AT1G12140	-0.706019643112044	0.341049090343353	0.0384391593683725	0.233743741095283	Down	26.15	25.00	17.61	14.15	AT1G12140	GO:0004497,monooxygenase activity; GO:0004499,N,N-dimethylaniline monooxygenase activity; GO:0016491,oxidoreductase activity; GO:0019761,glucosinolate biosynthetic process; GO:0046620,regulation of organ growth; GO:0046885,regulation of hormone biosynthetic process; GO:0048444,floral organ morphogenesis; GO:0050660,flavin adenine dinucleotide binding; GO:0050661,NADP binding; GO:0080107,8-methylthiopropyl glucosinolate S-oxygenase activity; 	GS-OX; aliphatic glucosinolate S-oxygenase [EC:1.14.13.237]; K22324; 	NP_001323223.1 flavin-monooxygenase glucosinolate S-oxygenase 5 [Arabidopsis thaliana]
AT1G12380	-0.715233650918555	0.257273403026243	0.00543500565019124	0.0551728683229315	Down	25.67	32.97	17.57	18.76	AT1G12380	GO:0003674,molecular_function; 	--	NP_172700.1 hypothetical protein AT1G12380 [Arabidopsis thaliana]
AT1G12640	-0.687784206208335	0.223673292174816	0.00210537794155569	0.0264076980434765	Down	64.27	59.51	40.81	37.17	AT1G12640	GO:0005576,extracellular region; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019375,galactolipid biosynthetic process; GO:0019432,triglyceride biosynthetic process; GO:0030258,lipid modification; GO:0045017,glycerolipid biosynthetic process; GO:0047184,1-acylglycerophosphocholine O-acyltransferase activity; GO:0071617,lysophospholipid acyltransferase activity; GO:0106262,1-acylglycerophosphoethanolamine O-acyltransferase activity; GO:0106263,1-acylglycerophosphoserine O-acyltransferase activity; 	LPT1, ALE1; lysophospholipid acyltransferase [EC:2.3.1.51 2.3.1.23 2.3.1.-]; K13519; 	NP_172724.2 MBOAT (membrane bound O-acyl transferase) family protein [Arabidopsis thaliana]
AT1G12650	1.68388423246922	0.435477072988239	0.000110292006627075	0.00233476508909363	Up	15.05	9.65	33.43	47.62	AT1G12650	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000469,cleavage involved in rRNA processing; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0030686,90S preribosome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	--	NP_001031031.1 rRNA biogenesis RRP36-like protein [Arabidopsis thaliana]
AT1G12900	-0.775807142450867	0.104613890985666	1.20793013436081e-13	1.9210735021469e-11	Down	478.44	469.51	282.39	280.18	AT1G12900	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005576,extracellular region; GO:0006006,glucose metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:1901149,salicylic acid binding; 	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298; 	NP_001321059.1 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Arabidopsis thaliana]
AT1G13000	-1.37013362473383	0.654690963489006	0.0363675061257864	0.226589107729975	Down	10.07	8.98	4.93	2.46	AT1G13000	GO:0000138,Golgi trans cisterna; GO:0016020,membrane; 	--	NP_001031034.1 transmembrane protein, putative (DUF707) [Arabidopsis thaliana]
AT1G13110	2.79183580513376	0.812014129784877	0.000585678049531894	1	Up	1.08	1.02	4.01	10.88	AT1G13110	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_172770.1 cytochrome P450, family 71 subfamily B, polypeptide 7 [Arabidopsis thaliana]
AT1G13140	-1.0157178800844	0.283685612125412	0.000343022736669591	0.00607018123878214	Down	36.64	37.70	16.19	21.35	AT1G13140	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_172773.4 cytochrome P450, family 86, subfamily C, polypeptide 3 [Arabidopsis thaliana]
AT1G13160	0.914561783989558	0.182827523846338	5.6644454886693e-07	2.28884189859748e-05	Up	42.01	32.20	70.56	71.67	AT1G13160	GO:0000055,ribosomal large subunit export from nucleus; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0015031,protein transport; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; 	--	NP_172775.1 ARM repeat superfamily protein [Arabidopsis thaliana]
AT1G13210	1.49936264804704	0.359761154248787	3.07740709363199e-05	0.000815710149497967	Up	4.02	3.35	10.74	10.45	AT1G13210	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity; GO:1901703,protein localization involved in auxin polar transport; 	E7.6.2.1; phospholipid-translocating ATPase [EC:7.6.2.1]; K01530; 	NP_172780.1 autoinhibited Ca2+/ATPase II [Arabidopsis thaliana]
AT1G13220	0.61051318722455	0.30348649441335	0.0442552525729057	0.256415884244229	Up	8.33	7.59	12.78	11.91	AT1G13220	GO:0005634,nucleus; GO:0005652,nuclear lamina; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0006997,nucleus organization; GO:0016020,membrane; GO:0031965,nuclear membrane; GO:0031981,nuclear lumen; GO:0034399,nuclear periphery; GO:0097298,regulation of nucleus size; 	--	NP_001322783.1 nuclear matrix constituent protein-like protein [Arabidopsis thaliana]
AT1G13230	2.62033509887205	0.947222118330047	0.00566900080674699	1	Up	0.92	0.81	5.03	5.78	AT1G13230	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009610,response to symbiotic fungus; GO:0016020,membrane; GO:0044403,biological process involved in symbiotic interaction; 	--	NP_172782.2 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT1G13280	-0.755452390126792	0.222454451678181	0.000683816475405156	0.0108613871669667	Down	165.07	155.18	76.31	117.38	AT1G13280	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009695,jasmonic acid biosynthetic process; GO:0016853,isomerase activity; GO:0046423,allene-oxide cyclase activity; 	AOC; allene oxide cyclase [EC:5.3.99.6]; K10525; 	NP_172786.1 allene oxide cyclase 4 [Arabidopsis thaliana]
AT1G13910	-1.42650768833323	0.633893329739629	0.0244241514133488	0.172737513273998	Down	9.28	14.58	4.14	4.91	AT1G13910	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016020,membrane; 	--	NP_001323054.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT1G14010	-0.738549549040857	0.287521128369947	0.0102086907116062	0.0911070563147299	Down	100.46	91.07	45.42	71.96	AT1G14010	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005793,endoplasmic reticulum-Golgi intermediate compartment; GO:0005794,Golgi apparatus; GO:0006886,intracellular protein transport; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0007030,Golgi organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030134,COPII-coated ER to Golgi transport vesicle; GO:0032580,Golgi cisterna membrane; 	TMED10, ERV25; p24 family protein delta-1; K20352; 	NP_172854.1 emp24/gp25L/p24 family/GOLD family protein [Arabidopsis thaliana]
AT1G14350	-1.52544484161897	0.66337252934547	0.0214748781665671	1	Down	9.09	7.54	2.72	3.18	AT1G14350	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0007049,cell cycle; GO:0009553,embryo sac development; GO:0009554,megasporogenesis; GO:0009629,response to gravity; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009737,response to abscisic acid; GO:0009926,auxin polar transport; GO:0010052,guard cell differentiation; GO:0010235,guard mother cell cytokinesis; GO:0010376,stomatal complex formation; GO:0010444,guard mother cell differentiation; GO:0032875,regulation of DNA endoreduplication; GO:0043565,sequence-specific DNA binding; GO:0050891,multicellular organismal water homeostasis; GO:0080022,primary root development; GO:0090436,leaf pavement cell development; GO:1901002,positive regulation of response to salt stress; GO:1901333,positive regulation of lateral root development; GO:1902584,positive regulation of response to water deprivation; GO:1902806,regulation of cell cycle G1/S phase transition; GO:2000037,regulation of stomatal complex patterning; 	--	NP_001077534.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]
AT1G14360	-0.732166093381136	0.30120556428304	0.0150661344397249	0.12151846406033	Down	43.75	47.57	28.80	27.00	AT1G14360	GO:0000139,Golgi membrane; GO:0005459,UDP-galactose transmembrane transporter activity; GO:0005460,UDP-glucose transmembrane transporter activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0008643,carbohydrate transport; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0015297,antiporter activity; GO:0015786,UDP-glucose transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0055085,transmembrane transport; GO:0072334,UDP-galactose transmembrane transport; 	--	NP_563949.1 UDP-galactose transporter 3 [Arabidopsis thaliana]
AT1G14520	0.889779545823283	0.442861199443836	0.0445200393702134	0.257349062622319	Up	9.97	11.70	20.23	20.56	AT1G14520	GO:0005506,iron ion binding; GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity; GO:0019310,inositol catabolic process; GO:0019853,L-ascorbic acid biosynthetic process; GO:0046872,metal ion binding; GO:0050113,inositol oxygenase activity; 	MIOX; inositol oxygenase [EC:1.13.99.1]; K00469; 	NP_001320937.1 myo-inositol oxygenase 1 [Arabidopsis thaliana]
AT1G14580	1.05905569385077	0.532385844657124	0.0466721334196294	0.265370860372953	Up	4.87	4.25	11.54	7.69	AT1G14580	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008356,asymmetric cell division; GO:0009507,chloroplast; GO:0009536,plastid; GO:0046872,metal ion binding; GO:0048364,root development; 	--	NP_001320583.1 C2H2-like zinc finger protein [Arabidopsis thaliana]
AT1G14640	3.26063704546516	1.54272916825202	0.0345536198024113	1	Up	0.21	0.12	0.31	2.95	AT1G14640	GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005686,U2 snRNP; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0045292,mRNA cis splicing, via spliceosome; GO:0071004,U2-type prespliceosome; GO:0071013,catalytic step 2 spliceosome; 	SF3A1, SAP114; splicing factor 3A subunit 1; K12825; 	AAF63169.1 T5E21.13 [Arabidopsis thaliana]
AT1G14700	-1.85745507615021	0.899803305480002	0.0389902169324716	1	Down	7.42	5.13	1.22	2.36	AT1G14700	GO:0000325,plant-type vacuole; GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0008198,ferrous iron binding; GO:0008199,ferric iron binding; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	ACP5; tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2]; K14379; 	NP_001320701.1 purple acid phosphatase 3 [Arabidopsis thaliana]
AT1G14980	0.628256164973531	0.172472235405994	0.000269844561574977	0.0049887060899219	Up	413.32	574.04	773.55	776.83	AT1G14980	GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006457,protein folding; GO:0009408,response to heat; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051087,chaperone binding; GO:0140662,ATP-dependent protein folding chaperone; 	--	NP_563961.1 chaperonin 10 [Arabidopsis thaliana]
AT1G14990	0.947850691845527	0.292980685205801	0.00121558163021859	0.0170580205009747	Up	62.83	78.09	124.32	152.21	AT1G14990	GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_172952.2 transmembrane protein [Arabidopsis thaliana]
AT1G15040	-1.02438853880314	0.300809962427391	0.000660589265952804	0.0105464734158874	Down	37.66	41.19	20.21	19.14	AT1G15040	GO:0005575,cellular_component; GO:0006541,glutamine metabolic process; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:2000032,regulation of secondary shoot formation; 	--	NP_850943.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]
AT1G15120	1.01992355142546	0.267127709055953	0.000134476794543726	0.00276189509323662	Up	62.20	79.15	127.97	163.65	AT1G15120	GO:0005576,extracellular region; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005750,mitochondrial respiratory chain complex III; GO:0005829,cytosol; GO:0006122,mitochondrial electron transport, ubiquinol to cytochrome c; GO:0016020,membrane; GO:0070469,respirasome; 	QCR6, UQCRH; ubiquinol-cytochrome c reductase subunit 6; K00416; 	NP_172964.1 Ubiquinol-cytochrome C reductase hinge protein [Arabidopsis thaliana]
AT1G15440	0.704470894314032	0.227970979129259	0.00200036603452773	0.0252693896724201	Up	18.38	22.58	36.70	30.98	AT1G15440	GO:0000028,ribosomal small subunit assembly; GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009553,embryo sac development; GO:0009744,response to sucrose; GO:0010119,regulation of stomatal movement; GO:0032040,small-subunit processome; GO:0034388,Pwp2p-containing subcomplex of 90S preribosome; GO:0042254,ribosome biogenesis; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:1990904,ribonucleoprotein complex; 	PWP2, UTP1; periodic tryptophan protein 2; K14558; 	NP_172998.1 periodic tryptophan protein 2 [Arabidopsis thaliana]
AT1G15460	-0.844802269326397	0.330543785884008	0.0105945409575061	0.0937412842923415	Down	17.67	18.46	9.58	10.91	AT1G15460	GO:0005452,solute:inorganic anion antiporter activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006820,anion transport; GO:0015698,inorganic anion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0035445,borate transmembrane transport; GO:0046713,borate transport; GO:0050801,ion homeostasis; GO:0055085,transmembrane transport; GO:0080029,cellular response to boron-containing substance levels; GO:0080139,borate efflux transmembrane transporter activity; 	--	NP_001319010.1 HCO3- transporter family [Arabidopsis thaliana]
AT1G16000	1.02690793435244	0.435081617593531	0.0182618822838009	0.140271609740279	Up	50.27	36.50	85.33	94.74	AT1G16000	GO:0009527,plastid outer membrane; GO:0016020,membrane; 	--	VYS46232.1 unnamed protein product [Arabidopsis thaliana]
AT1G16020	1.49457845365604	0.454230619603366	0.00100062260329305	0.0146896134838465	Up	8.79	7.40	33.96	12.20	AT1G16020	GO:0005085,guanyl-nucleotide exchange factor activity; GO:0005515,protein binding; GO:0005768,endosome; GO:0016192,vesicle-mediated transport; GO:0035658,Mon1-Ccz1 complex; GO:0043231,intracellular membrane-bounded organelle; GO:0050790,regulation of catalytic activity; 	--	NP_563989.1 vacuolar fusion protein (DUF1712) [Arabidopsis thaliana]
AT1G16080	-1.0601209035895	0.327319579196948	0.00120035960904033	0.0168826087870127	Down	45.02	44.83	20.42	23.49	AT1G16080	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0048046,apoplast; 	--	NP_563991.1 nuclear protein [Arabidopsis thaliana]
AT1G16410	2.64207486090616	0.878256013623783	0.0026269663381717	1	Up	0.57	1.10	6.78	3.70	AT1G16410	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009625,response to insect; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019761,glucosinolate biosynthetic process; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0103096,CYP79F1 dihomomethionine monooxygenase activity; GO:0103097,CYP79F1 trihomomethionine monooxygenase activity; 	CYP79F1; homomethionine N-monooxygenase [EC:1.14.14.42]; K12154; 	NP_563996.2 cytochrome p450 79f1 [Arabidopsis thaliana]
AT1G16430	1.81636982895676	0.8581457891203	0.0342919837654686	1	Up	3.10	5.68	14.15	17.24	AT1G16430	GO:0003712,transcription coregulator activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0016592,mediator complex; 	--	NP_563997.1 Surfeit locus protein 5 subunit 22 of Mediator complex [Arabidopsis thaliana]
AT1G16470	-0.630287074027655	0.244727388194796	0.010010510704808	0.0895962375852405	Down	93.65	104.75	68.16	61.89	AT1G16470	GO:0000502,proteasome complex; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005839,proteasome core complex; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0010043,response to zinc ion; GO:0010498,proteasomal protein catabolic process; GO:0019773,proteasome core complex, alpha-subunit complex; GO:0022626,cytosolic ribosome; GO:0051603,proteolysis involved in protein catabolic process; 	PSMA2; 20S proteasome subunit alpha 2 [EC:3.4.25.1]; K02726; 	NP_001031057.1 proteasome subunit PAB1 [Arabidopsis thaliana]
AT1G16480	-4.82785306366114	2.2232716447118	0.0298927624806339	1	Down	0.65	0.72	0.00	0.00	AT1G16480	GO:0005515,protein binding; GO:0008150,biological_process; GO:0008270,zinc ion binding; 	--	NP_001185013.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
AT1G17430	-1.07079396578778	0.509884176848279	0.0357224246941411	0.223693426719243	Down	16.65	17.01	8.44	7.82	AT1G17430	GO:0003674,molecular_function; GO:0016020,membrane; 	--	NP_564022.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT1G17470	0.595221728740072	0.253578910225199	0.0189108323560848	0.14343955610755	Up	33.39	40.99	61.87	52.06	AT1G17470	GO:0000166,nucleotide binding; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008289,lipid binding; GO:0019003,GDP binding; GO:0031410,cytoplasmic vesicle; GO:0070300,phosphatidic acid binding; 	K06944; uncharacterized protein; K06944; 	NP_001077555.1 developmentally regulated G-protein 1 [Arabidopsis thaliana]
AT1G17490	1.23896119685319	0.49910551099722	0.0130514138951612	0.109615971137085	Up	32.04	33.01	69.22	87.13	AT1G17490	GO:0005634,nucleus; GO:0008150,biological_process; 	--	NP_564026.1 epidermal patterning factor-like protein [Arabidopsis thaliana]
AT1G17510	1.33031237828012	0.502080992793294	0.00805877939622589	0.0758395254198092	Up	22.86	18.14	62.19	42.32	AT1G17510	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process; 	--	NP_564027.1 hypothetical protein AT1G17510 [Arabidopsis thaliana]
AT1G17560	1.09815210499959	0.448916224874923	0.0144359083401442	0.118086949163632	Up	19.52	13.91	30.20	42.85	AT1G17560	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005762,mitochondrial large ribosomal subunit; GO:0005840,ribosome; GO:0006412,translation; GO:0009553,embryo sac development; GO:0009741,response to brassinosteroid; GO:0019843,rRNA binding; GO:0048481,plant ovule development; GO:0060548,negative regulation of cell death; GO:0070180,large ribosomal subunit rRNA binding; GO:0080060,integument development; GO:1990904,ribonucleoprotein complex; 	RP-L14, MRPL14, rplN; large subunit ribosomal protein L14; K02874; 	NP_001321333.1 Ribosomal protein L14p/L23e family protein [Arabidopsis thaliana]
AT1G17960	4.4874850816491	1.9897565832079	0.0241149125803286	1	Up	0.17	0.00	2.45	1.58	AT1G17960	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004829,threonine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006435,threonyl-tRNA aminoacylation; GO:0009507,chloroplast; GO:0016874,ligase activity; 	TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3]; K01868; 	NP_173238.1 Threonyl-tRNA synthetase [Arabidopsis thaliana]
AT1G18150	-0.624434837856201	0.266548858861329	0.0191465359485637	0.144824864903617	Down	33.09	39.14	27.07	20.34	AT1G18150	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0000302,response to reactive oxygen species; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0009611,response to wounding; GO:0009753,response to jasmonic acid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0042542,response to hydrogen peroxide; GO:0106310,protein serine kinase activity; 	MPK8; mitogen-activated protein kinase 8 [EC:2.7.11.24]; K20538; 	NP_001185027.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT1G18170	-1.47783593064967	0.513175163394119	0.00397942035077536	0.0437630402937662	Down	25.82	24.57	9.07	9.33	AT1G18170	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity; 	--	NP_564048.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT1G18280	-0.787751815610503	0.226268222948879	0.000498622031124141	0.00839268154151285	Down	245.08	177.84	110.62	139.01	AT1G18280	GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; 	--	NP_173264.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT1G18440	0.960352885203146	0.436156184178688	0.027675518481499	0.188634509210437	Up	12.71	11.45	23.79	24.00	AT1G18440	GO:0004045,aminoacyl-tRNA hydrolase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; 	--	NP_173279.2 Peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana]
AT1G18520	-0.8953933483036	0.445826742048581	0.0446020128898141	0.257582853770086	Down	26.42	26.19	12.41	16.48	AT1G18520	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane; 	--	NP_564056.1 tetraspanin11 [Arabidopsis thaliana]
AT1G18960	-1.67942871158074	0.660696515658913	0.0110249688549136	1	Down	11.66	14.49	3.65	4.69	AT1G18960	GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; 	--	NP_173330.1 myb-like HTH transcriptional regulator family protein [Arabidopsis thaliana]
AT1G19110	-0.631235162223509	0.306390192325987	0.03937627869831	0.238042269616246	Down	17.79	20.12	12.96	11.87	AT1G19110	GO:0003674,molecular_function; GO:0005634,nucleus; 	--	NP_173345.2 inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana]
AT1G19150	-1.02294361780774	0.459922362954419	0.0261372871151425	0.181237029996279	Down	34.01	22.80	17.02	11.21	AT1G19150	GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; 	LHCA2; light-harvesting complex I chlorophyll a/b binding protein 2; K08908; 	NP_173349.1 PSI type II chlorophyll a/b-binding protein (Lhca2*1) [Arabidopsis thaliana]
AT1G19640	-0.93318357654332	0.372523766081237	0.0122440666710268	0.10446193057365	Down	32.44	35.65	12.11	24.47	AT1G19640	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009611,response to wounding; GO:0009694,jasmonic acid metabolic process; GO:0016740,transferase activity; GO:0030795,methyl jasmonate methylesterase activity; GO:0031408,oxylipin biosynthetic process; GO:0032259,methylation; GO:0046872,metal ion binding; 	E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141]; K08241; 	NP_173394.1 jasmonic acid carboxyl methyltransferase [Arabidopsis thaliana]
AT1G19960	-5.84941876219683	1.87649256851718	0.00182572341133005	1	Down	26.43	14.53	0.00	0.00	AT1G19960	GO:0003674,molecular_function; GO:0005575,cellular_component; 	--	NP_173425.2 transcription factor [Arabidopsis thaliana]
AT1G20050	-0.69281205074274	0.25754486972243	0.00714384265188751	0.0687877713759368	Down	92.39	92.35	59.25	56.81	AT1G20050	GO:0000247,C-8 sterol isomerase activity; GO:0004769,steroid delta-isomerase activity; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016125,sterol metabolic process; GO:0016126,sterol biosynthetic process; GO:0016853,isomerase activity; GO:0047750,cholestenol delta-isomerase activity; 	EBP; cholestenol Delta-isomerase [EC:5.3.3.5]; K01824; 	NP_173433.1 C-8,7 sterol isomerase [Arabidopsis thaliana]
AT1G20120	-1.64673414276186	0.237165748132199	3.82802317797114e-12	4.56602187718576e-10	Down	80.03	89.67	26.79	28.35	AT1G20120	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_564104.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]
AT1G20180	1.52791884995761	0.717007997522107	0.0330920369095052	1	Up	3.60	2.20	10.64	6.29	AT1G20180	GO:0016020,membrane; 	--	NP_173445.2 transmembrane protein (DUF677) [Arabidopsis thaliana]
AT1G20340	-0.881784513764172	0.104750396929157	3.83100825356535e-17	1.08008312239723e-14	Down	6313.27	5826.06	2983.47	3710.65	AT1G20340	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016020,membrane; GO:0017148,negative regulation of translation; GO:0019904,protein domain specific binding; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046028,electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; GO:0046688,response to copper ion; GO:0046872,metal ion binding; GO:0055035,plastid thylakoid membrane; GO:0055070,copper ion homeostasis; 	petE; plastocyanin; K02638; 	NP_173459.1 Cupredoxin superfamily protein [Arabidopsis thaliana]
AT1G20370	0.77856731361726	0.321478496273863	0.0154424344361334	0.124069559054556	Up	13.21	15.14	22.91	26.55	AT1G20370	GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0008033,tRNA processing; GO:0009451,RNA modification; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0031119,tRNA pseudouridine synthesis; GO:0043231,intracellular membrane-bounded organelle; 	--	NP_564112.1 Pseudouridine synthase family protein [Arabidopsis thaliana]
AT1G20510	0.891473809684222	0.322048902092059	0.00563786491299616	0.0568137402483488	Up	14.73	12.25	28.35	22.43	AT1G20510	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009695,jasmonic acid biosynthetic process; GO:0009753,response to jasmonic acid; GO:0016020,membrane; GO:0016405,CoA-ligase activity; GO:0016874,ligase activity; GO:0102391,decanoate-CoA ligase activity; 	OPCL1; OPC-8:0 CoA ligase 1 [EC:6.2.1.-]; K10526; 	NP_001322647.1 OPC-8:0 CoA ligase1 [Arabidopsis thaliana]
AT1G20570	-1.03455309522741	0.438943081950804	0.0184272878342026	0.14101867260565	Down	15.03	7.65	3.87	7.47	AT1G20570	GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0000922,spindle pole; GO:0000923,equatorial microtubule organizing center; GO:0000930,gamma-tubulin complex; GO:0005737,cytoplasm; GO:0005815,microtubule organizing center; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007020,microtubule nucleation; GO:0031122,cytoplasmic microtubule organization; GO:0043015,gamma-tubulin binding; GO:0051011,microtubule minus-end binding; GO:0051225,spindle assembly; GO:0051321,meiotic cell cycle; 	--	NP_001322745.1 Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]
AT1G20680	1.84374376172147	0.851312437730636	0.0303290521647357	1	Up	1.68	3.70	5.65	14.01	AT1G20680	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_001185046.1 transport/golgi organization-like protein (DUF833) [Arabidopsis thaliana]
AT1G21000	0.67470945342566	0.301320097565142	0.0251443108003567	0.176322880428731	Up	56.60	35.79	82.43	67.33	AT1G21000	--	--	NP_564128.1 PLATZ transcription factor family protein [Arabidopsis thaliana]
AT1G21140	-2.01515926726868	0.750658178333825	0.00726333501413412	1	Down	21.76	13.24	4.48	4.32	AT1G21140	GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006811,ion transport; GO:0006879,cellular iron ion homeostasis; GO:0006880,intracellular sequestering of iron ion; GO:0010039,response to iron ion; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0055072,iron ion homeostasis; GO:0071421,manganese ion transmembrane transport; 	--	NP_173538.2 Vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]
AT1G21160	3.90428698006466	0.328479031122429	1.40025430954366e-32	1.93001718998768e-29	Up	2.64	1.26	30.46	29.37	AT1G21160	GO:0000166,nucleotide binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process; 	EIF5B; translation initiation factor 5B; K03243; 	NP_173540.2 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]
AT1G21190	1.58755867471091	0.264720546201122	2.00857954381522e-09	1.38424606894599e-07	Up	82.08	84.08	242.18	265.60	AT1G21190	GO:0000290,deadenylation-dependent decapping of nuclear-transcribed mRNA; GO:0000398,mRNA splicing, via spliceosome; GO:0000932,P-body; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005688,U6 snRNP; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0033962,P-body assembly; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:0120114,Sm-like protein family complex; GO:0120115,Lsm2-8 complex; GO:1990726,Lsm1-7-Pat1 complex; GO:1990904,ribonucleoprotein complex; 	LSM3; U6 snRNA-associated Sm-like protein LSm3; K12622; 	NP_173542.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]
AT1G21540	-0.989524743319221	0.206798570196383	1.71013743114067e-06	6.37064709708711e-05	Down	66.05	76.80	37.36	35.69	AT1G21540	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity; 	--	NP_173573.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]
AT1G21750	-0.666537477556451	0.145599613524418	4.69713254373514e-06	0.000155796602152498	Down	170.60	194.90	125.12	108.52	AT1G21750	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0000327,lytic vacuole within protein storage vacuole; GO:0003756,protein disulfide isomerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0006457,protein folding; GO:0009579,thylakoid; GO:0009793,embryo development ending in seed dormancy; GO:0010043,response to zinc ion; GO:0016853,isomerase activity; GO:0034976,response to endoplasmic reticulum stress; GO:0043067,regulation of programmed cell death; GO:0048316,seed development; GO:0099503,secretory vesicle; 	PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1]; K09580; 	NP_173594.1 PDI-like 1-1 [Arabidopsis thaliana]
AT1G21780	0.710596714567243	0.327426504760945	0.0299880641707172	0.199458295814599	Up	28.42	24.41	52.63	34.93	AT1G21780	GO:0005515,protein binding; GO:0016567,protein ubiquitination; 	SPOP; speckle-type POZ protein; K10523; 	NP_001077574.1 BTB/POZ domain-containing protein [Arabidopsis thaliana]
AT1G21866	-4.74826347705928	2.2655457714261	0.0360947405623104	1	Down	4.98	8.22	0.00	0.00	AT1G21866	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001077577.1 Plant thionin family protein [Arabidopsis thaliana]
AT1G22150	-4.66409596202387	2.32405866577114	0.0447629410927457	1	Down	0.47	1.29	0.00	0.00	AT1G22150	GO:0005886,plasma membrane; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0015116,sulfate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport; 	--	NP_001319061.1 sulfate transporter 1;3 [Arabidopsis thaliana]
AT1G22380	-0.685247285129466	0.228322090004344	0.00268890688776423	0.0320114106935847	Down	55.90	53.89	34.50	34.89	AT1G22380	GO:0008194,UDP-glycosyltransferase activity; GO:0015020,glucuronosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; 	UGT85A; UDP-glucosyltransferase 85A [EC:2.4.1.-]; K23452; 	NP_173655.2 UDP-glucosyl transferase 85A3 [Arabidopsis thaliana]
AT1G22430	-1.75697471738637	0.826773152067173	0.0335783612140055	1	Down	6.25	7.45	3.34	0.66	AT1G22430	GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity; 	frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]; K00121; 	NP_001321091.1 GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]
AT1G22710	-0.678263182416491	0.160051106845187	2.25729482063135e-05	0.000627841754482779	Down	127.57	133.69	89.46	76.11	AT1G22710	GO:0005634,nucleus; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0005887,integral component of plasma membrane; GO:0005985,sucrose metabolic process; GO:0008506,sucrose:proton symporter activity; GO:0008515,sucrose transmembrane transporter activity; GO:0008643,carbohydrate transport; GO:0015293,symporter activity; GO:0015770,sucrose transport; GO:0016020,membrane; GO:0055085,transmembrane transport; 	--	NP_173685.1 sucrose-proton symporter 2 [Arabidopsis thaliana]
AT1G22780	0.740086674157161	0.136480441727247	5.87194769595049e-08	2.89053615747087e-06	Up	412.94	468.45	793.26	701.28	AT1G22780	GO:0000325,plant-type vacuole; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006413,translational initiation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S18e, RPS18; small subunit ribosomal protein S18e; K02964; 	NP_173692.1 Ribosomal protein S13/S18 family [Arabidopsis thaliana]
AT1G22940	0.732991057812641	0.367775417797668	0.0462570853155735	0.264310982653012	Up	13.29	10.34	22.15	17.70	AT1G22940	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0004789,thiamine-phosphate diphosphorylase activity; GO:0005524,ATP binding; GO:0008152,metabolic process; GO:0008902,hydroxymethylpyrimidine kinase activity; GO:0008972,phosphomethylpyrimidine kinase activity; GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; 	thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]; K14153; 	NP_173707.2 thiamin biosynthesis protein [Arabidopsis thaliana]
AT1G23205	0.645292572378883	0.326219146214523	0.0479179523812974	0.269457025970079	Up	39.05	38.75	55.15	68.79	AT1G23205	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; 	--	NP_173734.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT1G23260	0.739171411697092	0.333689687555362	0.0267500377319359	0.184454818268296	Up	54.52	41.57	74.28	89.13	AT1G23260	GO:0000209,protein polyubiquitination; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006301,postreplication repair; GO:0031372,UBC13-MMS2 complex; GO:0070534,protein K63-linked ubiquitination; GO:1902916,positive regulation of protein polyubiquitination; 	UBE2V; ubiquitin-conjugating enzyme E2 variant; K10704; 	NP_564191.1 MMS ZWEI homologue 1 [Arabidopsis thaliana]
AT1G23280	0.764663403302174	0.308818253858188	0.0132828146239227	0.110858699597504	Up	28.52	26.54	44.77	50.42	AT1G23280	GO:0000460,maturation of 5.8S rRNA; GO:0000470,maturation of LSU-rRNA; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030687,preribosome, large subunit precursor; 	--	NP_173742.1 MAK16 protein-like protein [Arabidopsis thaliana]
AT1G23290	0.656627426621677	0.10986631694254	2.27837667279727e-09	1.55292651791484e-07	Up	728.37	756.75	1187.57	1191.26	AT1G23290	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0009791,post-embryonic development; GO:0009908,flower development; GO:0010229,inflorescence development; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae; K02900; 	NP_173743.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]
AT1G23390	-0.76360354552508	0.388707437418431	0.0494757771582828	0.274607165838254	Down	20.96	26.29	15.38	12.81	AT1G23390	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; 	--	NP_564193.1 Kelch repeat-containing F-box family protein [Arabidopsis thaliana]
AT1G23410	2.44221202068203	0.508005296728901	1.52864690267584e-06	5.78136122795544e-05	Up	7.46	13.67	71.64	44.21	AT1G23410	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0022627,cytosolic small ribosomal subunit; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae; K02977; 	NP_173755.1 Ribosomal protein S27a / Ubiquitin family protein [Arabidopsis thaliana]
AT1G23520	-1.12541807294259	0.488962529403528	0.021355210375439	0.15684510639865	Down	21.37	22.29	10.66	9.64	AT1G23520	--	--	NP_001323392.1 hypothetical protein (DUF220) [Arabidopsis thaliana]
AT1G23740	-0.873328392315804	0.225442704463076	0.000107134883810559	0.00228744962765917	Down	73.86	80.29	43.60	41.85	AT1G23740	GO:0005634,nucleus; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016491,oxidoreductase activity; GO:0016628,oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; GO:0035671,enone reductase activity; GO:0035798,2-alkenal reductase (NADP+) activity; GO:0048046,apoplast; 	EO, FaQR; 2-methylene-furan-3-one reductase [EC:1.3.1.105]; K18980; 	NP_173786.1 Oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana]
AT1G24000	-4.81934610984074	2.22782643490047	0.0305219366528403	1	Down	5.71	4.88	0.00	0.00	AT1G24000	GO:0006952,defense response; 	--	NP_173811.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Arabidopsis thaliana]
AT1G24050	0.806861276622382	0.313830184448609	0.0101401713961894	0.0906912950034102	Up	41.32	60.40	102.96	77.28	AT1G24050	GO:0003674,molecular_function; GO:0005575,cellular_component; 	--	NP_173816.2 RNA-processing, Lsm domain-containing protein [Arabidopsis thaliana]
AT1G24190	0.750253619821957	0.267893452201501	0.00510128823455169	0.0525593692272539	Up	9.52	10.46	20.23	13.80	AT1G24190	GO:0000118,histone deacetylase complex; GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000785,chromatin; GO:0003714,transcription corepressor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009737,response to abscisic acid; GO:0016575,histone deacetylation; GO:0016580,Sin3 complex; GO:0045892,negative regulation of DNA-templated transcription; 	SIN3A; paired amphipathic helix protein Sin3a; K11644; 	NP_001185080.1 SIN3-like 3 [Arabidopsis thaliana]
AT1G24210	3.6804018652838	1.3156763664261	0.00515243421403407	1	Up	0.50	1.10	8.65	12.05	AT1G24210	GO:0000118,histone deacetylase complex; GO:0000122,negative regulation of transcription by RNA polymerase II; GO:0000785,chromatin; GO:0003714,transcription corepressor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016575,histone deacetylation; GO:0045892,negative regulation of DNA-templated transcription; 	--	NP_564212.1 Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]
AT1G24400	-1.2180681233508	0.357654102154249	0.0006599090599441	0.0105464734158874	Down	25.80	33.01	11.71	14.07	AT1G24400	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0015171,amino acid transmembrane transporter activity; GO:0015172,acidic amino acid transmembrane transporter activity; GO:0015293,symporter activity; GO:0015800,acidic amino acid transport; GO:0016020,membrane; 	--	NP_564217.1 lysine histidine transporter 2 [Arabidopsis thaliana]
AT1G24490	1.27117033725754	0.280902178175237	6.03061256270142e-06	0.000196351046824963	Up	17.03	15.79	38.92	41.65	AT1G24490	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0010027,thylakoid membrane organization; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0032977,membrane insertase activity; GO:0051205,protein insertion into membrane; GO:0072598,protein localization to chloroplast; GO:0090150,establishment of protein localization to membrane; 	yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase; K03217; 	NP_173858.5 OxaA/YidC-like membrane insertion protein [Arabidopsis thaliana]
AT1G24625	2.85106216471064	1.42845431522515	0.0459440315631754	1	Up	1.12	0.41	9.11	2.07	AT1G24625	GO:0000976,transcription cis-regulatory region binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009738,abscisic acid-activated signaling pathway; GO:0009788,negative regulation of abscisic acid-activated signaling pathway; GO:0019760,glucosinolate metabolic process; GO:0046872,metal ion binding; GO:0046982,protein heterodimerization activity; 	--	NP_564223.1 zinc finger protein 7 [Arabidopsis thaliana]
AT1G25260	0.598703722063036	0.191887569844354	0.00180804638023297	0.0234121245791127	Up	131.71	106.20	187.79	178.30	AT1G25260	GO:0000027,ribosomal large subunit assembly; GO:0000956,nuclear-transcribed mRNA catabolic process; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0022626,cytosolic ribosome; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042255,ribosome assembly; GO:0042273,ribosomal large subunit biogenesis; 	--	NP_564226.1 Ribosomal protein L10 family protein [Arabidopsis thaliana]
AT1G25280	0.743148033537754	0.238207188163944	0.00181001602854083	0.023413189607976	Up	38.00	35.03	54.48	70.03	AT1G25280	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006355,regulation of DNA-templated transcription; GO:0009536,plastid; GO:0009620,response to fungus; GO:0016567,protein ubiquitination; 	TULP1; tubby-related protein 1; K19600; 	NP_173899.1 tubby like protein 10 [Arabidopsis thaliana]
AT1G26120	0.980706172464022	0.241726985373471	4.96896651438674e-05	0.00122788903607505	Up	31.93	26.99	53.53	64.87	AT1G26120	GO:0000139,Golgi membrane; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0010296,prenylcysteine methylesterase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; 	PCME; prenylcysteine alpha-carboxyl methylesterase [EC:3.1.1.-]; K15889; 	NP_173937.2 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT1G26320	-1.83484678326486	0.819029414646622	0.0250734189164875	1	Down	5.55	10.73	2.56	2.05	AT1G26320	GO:0005634,nucleus; GO:0006979,response to oxidative stress; GO:0016628,oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; GO:0032440,2-alkenal reductase [NAD(P)+] activity; 	E1.3.1.74; 2-alkenal reductase [EC:1.3.1.74]; K08070; 	NP_001185098.1 Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]
AT1G26580	1.53556560426353	0.728263674204604	0.0349851944194357	1	Up	3.00	1.39	6.83	6.15	AT1G26580	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001321647.1 ELM2 domain protein [Arabidopsis thaliana]
AT1G26720	-1.17395937035168	0.494492813441906	0.0175933288052657	0.137002664048538	Down	45.02	31.81	15.22	19.56	AT1G26720	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_173994.1 transmembrane protein [Arabidopsis thaliana]
AT1G26880	0.596878002589373	0.1818894721194	0.00103241025998623	0.0150494116041471	Up	216.03	230.08	346.21	339.16	AT1G26880	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	RP-L34e, RPL34; large subunit ribosomal protein L34e; K02915; 	NP_174010.1 Ribosomal protein L34e superfamily protein [Arabidopsis thaliana]
AT1G26920	0.764140559677888	0.325491905991797	0.0188923444737631	0.143438516055119	Up	46.23	46.37	67.23	93.08	AT1G26920	--	--	NP_564266.1 zinc finger CCHC domain protein [Arabidopsis thaliana]
AT1G27030	1.28715728688255	0.385257807432014	0.000834686760617214	0.0127330980098997	Up	13.56	13.25	34.36	32.08	AT1G27030	GO:0005575,cellular_component; 	--	NP_564270.1 hypothetical protein AT1G27030 [Arabidopsis thaliana]
AT1G27330	-0.978978050552093	0.395318566259311	0.0132704308976065	0.110855013659804	Down	161.85	120.67	78.25	67.06	AT1G27330	GO:0005783,endoplasmic reticulum; GO:0006486,protein glycosylation; GO:0006979,response to oxidative stress; GO:0015031,protein transport; GO:0016020,membrane; GO:0030968,endoplasmic reticulum unfolded protein response; 	--	NP_564277.1 Ribosome associated membrane protein RAMP4 [Arabidopsis thaliana]
AT1G27400	0.889592151914864	0.178424838541216	6.17031027123748e-07	2.45329163188144e-05	Up	168.11	145.48	291.69	299.01	AT1G27400	GO:0000325,plant-type vacuole; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L17e, RPL17; large subunit ribosomal protein L17e; K02880; 	NP_174060.1 Ribosomal protein L22p/L17e family protein [Arabidopsis thaliana]
AT1G27410	-1.36529843815663	0.612825196814953	0.0258887969920123	0.180118074417225	Down	10.34	12.99	6.65	2.39	AT1G27410	GO:0005634,nucleus; GO:0006974,cellular response to DNA damage stimulus; GO:0008150,biological_process; 	--	NP_174061.1 DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]
AT1G27450	0.765637698282304	0.137394608968327	2.51044018197341e-08	1.33885637699067e-06	Up	209.35	187.63	339.03	347.05	AT1G27450	GO:0003999,adenine phosphoribosyltransferase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006166,purine ribonucleoside salvage; GO:0006168,adenine salvage; GO:0007623,circadian rhythm; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009690,cytokinin metabolic process; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0044209,AMP salvage; 	APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7]; K00759; 	NP_564284.1 adenine phosphoribosyl transferase 1 [Arabidopsis thaliana]
AT1G27470	0.782125692792145	0.288339637302307	0.00667746882170347	0.0655332284281895	Up	12.42	11.22	21.50	19.79	AT1G27470	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0010073,meristem maintenance; GO:0035266,meristem growth; 	UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4; K14548; 	NP_174067.2 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT1G27640	1.73936574551006	0.640786323546953	0.00663911413652282	0.0652084013171541	Up	7.39	9.86	35.72	22.47	AT1G27640	GO:0003674,molecular_function; 	--	NP_174085.1 hypothetical protein AT1G27640 [Arabidopsis thaliana]
AT1G27695	0.936772010360602	0.234109014201398	6.29594831962208e-05	0.00149048165849068	Up	157.04	150.21	314.22	282.92	AT1G27695	GO:0005319,lipid transporter activity; GO:0005515,protein binding; GO:0006869,lipid transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009666,plastid outer membrane organization; GO:0009667,plastid inner membrane organization; GO:0009941,chloroplast envelope; GO:0010441,guard cell development; GO:0016020,membrane; GO:0020037,heme binding; GO:0031969,chloroplast membrane; GO:0043231,intracellular membrane-bounded organelle; GO:1901965,endoplasmic reticulum to chloroplast transport; GO:1990052,ER to chloroplast lipid transport; 	--	NP_001031097.1 glycine-rich protein [Arabidopsis thaliana]
AT1G27710	-2.12658343806687	0.338577787410767	3.36553304008424e-10	2.69351208788677e-08	Down	86.90	98.73	26.40	16.29	AT1G27710	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_174092.1 Glycine-rich protein family [Arabidopsis thaliana]
AT1G27960	0.625055560533859	0.304697616800563	0.0402283701086334	0.242014030648689	Up	17.90	15.45	29.79	22.34	AT1G27960	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0061157,mRNA destabilization; 	--	NP_174117.2 evolutionarily conserved C-terminal region 9 [Arabidopsis thaliana]
AT1G27980	-0.703726080872771	0.344388910084109	0.0410123456761645	0.244900601801728	Down	19.92	25.99	16.30	12.21	AT1G27980	GO:0003824,catalytic activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0008117,sphinganine-1-phosphate aldolase activity; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016830,carbon-carbon lyase activity; GO:0019752,carboxylic acid metabolic process; GO:0030149,sphingolipid catabolic process; GO:0030170,pyridoxal phosphate binding; GO:1901564,organonitrogen compound metabolic process; 	SGPL1, DPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27]; K01634; 	NP_174119.1 dihydrosphingosine phosphate lyase [Arabidopsis thaliana]
AT1G28395	1.41388935845163	0.470228955638246	0.00264004287418475	0.0314901267829441	Up	34.11	30.15	119.60	53.54	AT1G28395	GO:0005739,mitochondrion; GO:0008150,biological_process; 	--	NP_001185107.1 hypothetical protein AT1G28395 [Arabidopsis thaliana]
AT1G28430	-1.0386425712897	0.312409061096756	0.000885379441918702	0.013345592669158	Down	27.53	36.83	15.51	16.34	AT1G28430	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_174165.1 cytochrome P450, family 705, subfamily A, polypeptide 24 [Arabidopsis thaliana]
AT1G28540	1.42819257802702	0.499387860370369	0.00423792712504722	0.0458738970211263	Up	21.78	23.93	53.00	72.30	AT1G28540	GO:0005741,mitochondrial outer membrane; GO:0009527,plastid outer membrane; GO:0016020,membrane; 	--	NP_564312.1 transmembrane protein [Arabidopsis thaliana]
AT1G29140	-1.3118854524492	0.181927289590595	5.55250405184587e-13	7.48682747425521e-11	Down	500.36	400.73	161.53	208.50	AT1G29140	--	--	NP_174209.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]
AT1G29395	-0.732230811731059	0.263305135012067	0.00542049054745598	0.0550705857831216	Down	111.27	98.37	52.76	76.14	AT1G29395	GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009631,cold acclimation; GO:0009706,chloroplast inner membrane; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042631,cellular response to water deprivation; GO:0070417,cellular response to cold; 	--	NP_564328.1 COLD REGULATED 314 INNER MEMBRANE 1 [Arabidopsis thaliana]
AT1G29640	1.07422941525876	0.313493764372608	0.000611104808858828	0.00993545891729196	Up	52.06	79.75	117.27	165.12	AT1G29640	GO:0005737,cytoplasm; GO:0009617,response to bacterium; GO:0009646,response to absence of light; GO:0010150,leaf senescence; 	--	NP_174257.1 senescence regulator (Protein of unknown function, DUF584) [Arabidopsis thaliana]
AT1G29900	0.767241954782882	0.106035951288485	4.63210614600598e-13	6.38458630457824e-11	Up	100.97	96.53	173.55	167.97	AT1G29900	GO:0000166,nucleotide binding; GO:0004088,carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005951,carbamoyl-phosphate synthase complex; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0006526,arginine biosynthetic process; GO:0006541,glutamine metabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016036,cellular response to phosphate starvation; GO:0016740,transferase activity; GO:0016874,ligase activity; GO:0044205,'de novo' UMP biosynthetic process; GO:0046872,metal ion binding; 	carB, CPA2; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]; K01955; 	NP_564338.1 carbamoyl phosphate synthetase B [Arabidopsis thaliana]
AT1G29940	0.903241958483534	0.241801073771244	0.000187360908814909	0.00363158136538898	Up	13.12	14.49	30.72	21.59	AT1G29940	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0009561,megagametogenesis; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0032549,ribonucleoside binding; GO:0042254,ribosome biogenesis; GO:0046872,metal ion binding; 	RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]; K03002; 	NP_564341.2 nuclear RNA polymerase A2 [Arabidopsis thaliana]
AT1G30170	1.93992406676313	0.783737861061218	0.0133153916685581	1	Up	2.77	1.40	9.19	7.09	AT1G30170	--	--	NP_174309.1 hypothetical protein (DUF295) [Arabidopsis thaliana]
AT1G30240	0.728360438680754	0.292380597247599	0.0127334623885627	0.107748022462565	Up	10.94	12.54	18.61	20.96	AT1G30240	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0008150,biological_process; 	--	NP_001077628.1 proline-, glutamic acid/leucine-rich protein [Arabidopsis thaliana]
AT1G30280	1.24919398079375	0.339441875956159	0.000233104981295354	0.00441475922590668	Up	13.43	10.07	29.58	27.20	AT1G30280	GO:0005737,cytoplasm; GO:0030276,clathrin binding; GO:0031982,vesicle; GO:0043231,intracellular membrane-bounded organelle; GO:0072318,clathrin coat disassembly; GO:0072583,clathrin-dependent endocytosis; 	--	NP_001322470.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]
AT1G30350	-0.697567306840017	0.229733355464925	0.00239404413624901	0.0292592290740581	Down	104.55	82.11	49.99	67.40	AT1G30350	GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; 	pel; pectate lyase [EC:4.2.2.2]; K01728; 	NP_174324.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT1G30590	0.813674106113414	0.359095509204327	0.0234575762402138	0.168189919791461	Up	9.51	13.27	23.87	16.65	AT1G30590	GO:0001042,RNA polymerase I core binding; GO:0001181,RNA polymerase I general transcription initiation factor activity; GO:0003743,translation initiation factor activity; GO:0005634,nucleus; GO:0006361,transcription initiation at RNA polymerase I promoter; GO:0006413,translational initiation; 	--	NP_001320918.1 RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]
AT1G30710	-0.753829651465425	0.282225325917045	0.00756210120860639	0.0722225745055341	Down	51.82	37.75	32.77	20.93	AT1G30710	GO:0000166,nucleotide binding; GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding; 	--	NP_174358.1 FAD-binding Berberine family protein [Arabidopsis thaliana]
AT1G31130	-0.852715929863462	0.292106545066895	0.00350936761113723	0.0395042697061319	Down	53.12	60.51	36.68	26.94	AT1G31130	GO:0003674,molecular_function; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; 	--	NP_564374.1 polyadenylate-binding protein 1-B-binding protein [Arabidopsis thaliana]
AT1G31660	0.616546399766323	0.141884542836963	1.39016259379552e-05	0.00040672091924607	Up	123.20	120.56	199.44	180.02	AT1G31660	GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006364,rRNA processing; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0030515,snoRNA binding; GO:0030688,preribosome, small subunit precursor; GO:0042254,ribosome biogenesis; GO:0043229,intracellular organelle; 	--	NP_174447.2 bystin-like protein [Arabidopsis thaliana]
AT1G31812	-0.599496214353365	0.173377263287879	0.000544695141459022	0.00898529684813719	Down	603.78	523.32	373.73	382.50	AT1G31812	GO:0000062,fatty-acyl-CoA binding; GO:0001666,response to hypoxia; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006631,fatty acid metabolic process; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0009409,response to cold; GO:0009646,response to absence of light; GO:0016020,membrane; GO:0031210,phosphatidylcholine binding; GO:0050826,response to freezing; 	--	NP_174462.1 acyl-CoA-binding protein 6 [Arabidopsis thaliana]
AT1G32080	-0.784645172101044	0.189103498632567	3.33508728667679e-05	0.00086551794542313	Down	84.64	81.15	48.24	49.61	AT1G32080	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization; GO:0009706,chloroplast inner membrane; GO:0009737,response to abscisic acid; GO:0009853,photorespiration; GO:0009941,chloroplast envelope; GO:0010118,stomatal movement; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0042631,cellular response to water deprivation; GO:0043879,glycolate transmembrane transporter activity; GO:0048527,lateral root development; GO:0097339,glycolate transmembrane transport; GO:1901974,glycerate transmembrane transporter activity; GO:1901975,glycerate transmembrane transport; 	--	NP_564388.1 membrane protein [Arabidopsis thaliana]
AT1G32250	-3.0443779993232	1.33593967475631	0.0226772355778738	1	Down	13.09	5.14	1.35	0.87	AT1G32250	GO:0005509,calcium ion binding; GO:0030234,enzyme regulator activity; GO:0046872,metal ion binding; GO:0050790,regulation of catalytic activity; 	CML; calcium-binding protein CML; K13448; 	NP_174504.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]
AT1G32460	0.841492736446825	0.414165269872729	0.0421759268168468	0.248010681680887	Up	43.67	52.61	95.55	79.30	AT1G32460	--	--	NP_564403.1 hypothetical protein AT1G32460 [Arabidopsis thaliana]
AT1G32550	-1.00861064966784	0.268729805762615	0.000174555299771956	0.00343225342335141	Down	115.96	105.78	61.92	49.66	AT1G32550	GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; 	petF; ferredoxin; K02639; 	NP_174533.1 2Fe-2S ferredoxin-like superfamily protein [Arabidopsis thaliana]
AT1G32580	1.32176815174822	0.263795539332626	5.42667696169654e-07	2.20714517081461e-05	Up	38.71	40.68	102.21	99.34	AT1G32580	GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016554,cytidine to uridine editing; GO:0042803,protein homodimerization activity; GO:0043170,macromolecule metabolic process; GO:0046983,protein dimerization activity; GO:0080156,mitochondrial mRNA modification; 	--	NP_174536.1 plastid developmental protein DAG [Arabidopsis thaliana]
AT1G32640	0.630651189262066	0.244199653813306	0.00980808631297516	0.0882301020394901	Up	29.66	28.20	37.31	53.99	AT1G32640	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006568,tryptophan metabolic process; GO:0009269,response to desiccation; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009753,response to jasmonic acid; GO:0009759,indole glucosinolate biosynthetic process; GO:0009963,positive regulation of flavonoid biosynthetic process; GO:0010374,stomatal complex development; GO:0019900,kinase binding; GO:0043565,sequence-specific DNA binding; GO:0043619,regulation of transcription from RNA polymerase II promoter in response to oxidative stress; GO:0045893,positive regulation of DNA-templated transcription; GO:0046983,protein dimerization activity; GO:0051090,regulation of DNA-binding transcription factor activity; GO:0051289,protein homotetramerization; GO:0090357,regulation of tryptophan metabolic process; GO:0106167,extracellular ATP signaling; GO:2000068,regulation of defense response to insect; GO:2000652,regulation of secondary cell wall biogenesis; 	MYC2; transcription factor MYC2; K13422; 	NP_174541.1 Basic helix-loop-helix (bHLH) DNA-binding family protein [Arabidopsis thaliana]
AT1G32780	-1.19634295930664	0.5047279001427	0.0177749508547801	0.137983895715612	Down	15.42	16.30	5.41	8.79	AT1G32780	GO:0004022,alcohol dehydrogenase (NAD+) activity; GO:0004024,alcohol dehydrogenase activity, zinc-dependent; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0018455,alcohol dehydrogenase [NAD(P)+] activity; GO:0046294,formaldehyde catabolic process; GO:0046872,metal ion binding; GO:0051903,S-(hydroxymethyl)glutathione dehydrogenase activity; 	E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1]; K00001; 	NP_564409.1 GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]
AT1G32870	1.09723509214392	0.410803787243867	0.00756376164702885	0.0722225745055341	Up	6.36	12.15	23.69	16.38	AT1G32870	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006355,regulation of DNA-templated transcription; GO:0010114,response to red light; GO:0010224,response to UV-B; GO:0016020,membrane; GO:0031930,mitochondria-nucleus signaling pathway; GO:1900409,positive regulation of cellular response to oxidative stress; 	--	NP_001323024.1 NAC domain protein 13 [Arabidopsis thaliana]
AT1G32920	1.69532281152972	0.675665169991634	0.0121033465734553	1	Up	17.79	10.87	46.99	47.59	AT1G32920	GO:0009611,response to wounding; 	--	NP_001319130.1 hypothetical protein AT1G32920 [Arabidopsis thaliana]
AT1G33430	-0.879502502414013	0.224793623021496	9.13498265706666e-05	0.00200921028122184	Down	76.68	76.66	38.57	46.38	AT1G33430	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0008194,UDP-glycosyltransferase activity; GO:0008378,galactosyltransferase activity; GO:0010407,non-classical arabinogalactan protein metabolic process; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016758,hexosyltransferase activity; GO:0048531,beta-1,3-galactosyltransferase activity; 	--	NP_001185130.1 Galactosyltransferase family protein [Arabidopsis thaliana]
AT1G33560	1.00805649585669	0.369626129114329	0.00638679649802866	0.0632308144916565	Up	7.63	6.43	12.13	16.70	AT1G33560	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006952,defense response; GO:0009414,response to water deprivation; GO:0009626,plant-type hypersensitive response; GO:0016301,kinase activity; GO:0042742,defense response to bacterium; GO:0043531,ADP binding; GO:0051707,response to other organism; 	--	NP_174620.2 Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]
AT1G33811	0.722143748878109	0.22633366696047	0.00141969988506212	0.0194171742824648	Up	83.15	52.98	106.12	122.39	AT1G33811	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_564430.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]
AT1G33980	1.13450476508829	0.329590722406082	0.000577083861188933	0.00945670448883582	Up	12.24	13.80	27.13	31.01	AT1G33980	GO:0000184,nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0042742,defense response to bacterium; GO:0045727,positive regulation of translation; GO:0048571,long-day photoperiodism; GO:0051028,mRNA transport; 	UPF3, RENT3; regulator of nonsense transcripts 3; K14328; 	NP_174660.2 Smg-4/UPF3 family protein [Arabidopsis thaliana]
AT1G34060	1.1958366688532	0.223942663131945	9.29858577387143e-08	4.36927865624527e-06	Up	39.38	30.89	74.18	89.75	AT1G34060	GO:0003824,catalytic activity; GO:0006520,cellular amino acid metabolic process; GO:0008483,transaminase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016846,carbon-sulfur lyase activity; 	--	NP_564435.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]
AT1G34270	-1.94144495016407	0.750283476407492	0.00966428657057452	1	Down	6.21	8.08	1.41	2.42	AT1G34270	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0006486,protein glycosylation; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; 	--	OAP12259.1 hypothetical protein AXX17_AT1G35140 [Arabidopsis thaliana]
AT1G34470	1.58856167784925	0.536596841473298	0.00307201952121077	0.0353838460172884	Up	6.14	6.05	11.58	25.86	AT1G34470	GO:0005768,endosome; GO:0005769,early endosome; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0015095,magnesium ion transmembrane transporter activity; GO:0015693,magnesium ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1903830,magnesium ion transmembrane transport; 	--	NP_564447.1 magnesium transporter, putative (DUF803) [Arabidopsis thaliana]
AT1G34640	-1.38598520285509	0.598422330184036	0.0205547027369172	0.152227514896393	Down	47.14	34.80	16.21	15.63	AT1G34640	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0048658,anther wall tapetum development; 	--	NP_564450.1 peptidase [Arabidopsis thaliana]
AT1G35680	-0.847854977898125	0.207422840437651	4.35918808115003e-05	0.0010836819267869	Down	163.61	200.41	97.21	108.62	AT1G35680	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009793,embryo development ending in seed dormancy; GO:0009941,chloroplast envelope; GO:0010027,thylakoid membrane organization; GO:0019843,rRNA binding; GO:0043229,intracellular organelle; GO:1990904,ribonucleoprotein complex; 	RP-L21, MRPL21, rplU; large subunit ribosomal protein L21; K02888; 	NP_174808.1 Ribosomal protein L21 [Arabidopsis thaliana]
AT1G36180	1.59104222093152	0.402075610298192	7.58740024282942e-05	0.00174029981151639	Up	1.88	1.21	5.32	4.14	AT1G36180	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0003989,acetyl-CoA carboxylase activity; GO:0004075,biotin carboxylase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0008152,metabolic process; GO:0016874,ligase activity; GO:0046872,metal ion binding; GO:2001295,malonyl-CoA biosynthetic process; 	ACACA; acetyl-CoA carboxylase / biotin carboxylase 1 [EC:6.4.1.2 6.3.4.14 2.1.3.15]; K11262; 	NP_001117417.1 acetyl-CoA carboxylase 2 [Arabidopsis thaliana]
AT1G36675	2.13874559192528	0.21466293579944	2.20673998898505e-23	1.05286959859075e-20	Up	46.16	36.38	196.95	172.56	AT1G36675	GO:0008150,biological_process; 	--	NP_683354.1 glycine-rich protein [Arabidopsis thaliana]
AT1G36730	0.844302352841609	0.243877167460197	0.000536180430195618	0.00886842431543551	Up	29.64	30.43	54.71	54.88	AT1G36730	GO:0000166,nucleotide binding; GO:0001731,formation of translation preinitiation complex; GO:0001732,formation of cytoplasmic translation initiation complex; GO:0003743,translation initiation factor activity; GO:0005092,GDP-dissociation inhibitor activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005829,cytosol; GO:0006412,translation; GO:0006413,translational initiation; GO:0050790,regulation of catalytic activity; GO:0071074,eukaryotic initiation factor eIF2 binding; 	EIF5; translation initiation factor 5; K03262; 	NP_174877.1 Translation initiation factor IF2/IF5 [Arabidopsis thaliana]
AT1G42440	0.749663499873538	0.167734476542075	7.84589321320925e-06	0.000243930589749025	Up	42.39	44.65	69.98	78.86	AT1G42440	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000479,endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030688,preribosome, small subunit precursor; GO:0034511,U3 snoRNA binding; GO:0042254,ribosome biogenesis; 	--	NP_564480.1 pre-rRNA-processing TSR1-like protein [Arabidopsis thaliana]
AT1G42480	-1.49635492549028	0.470690978314786	0.00147753433904874	0.0199878009551796	Down	32.90	39.81	17.23	8.61	AT1G42480	GO:0005634,nucleus; 	--	NP_564481.1 TLR4 regulator/MIR-interacting MSAP protein [Arabidopsis thaliana]
AT1G43170	0.599834768760909	0.0923091860152644	8.1338114376548e-11	7.5864609687299e-09	Up	601.14	614.49	967.64	903.96	AT1G43170	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L3e, RPL3; large subunit ribosomal protein L3e; K02925; 	NP_001031146.1 ribosomal protein 1 [Arabidopsis thaliana]
AT1G44224	-0.87043388921877	0.318534739337069	0.00628330837070984	0.0624054766522463	Down	68.33	59.57	40.24	30.54	AT1G44224	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001077678.1 ECA1 gametogenesis related family protein [Arabidopsis thaliana]
AT1G44414	5.41929501275832	2.29601041844121	0.0182596979459399	1	Up	0.00	0.00	9.92	2.84	AT1G44414	GO:0008150,biological_process; 	--	NP_175087.1 zinc-ribbon domain protein [Arabidopsis thaliana]
AT1G44575	-1.2966888411908	0.117141645453574	1.76560200262386e-28	1.46015285616993e-25	Down	627.93	658.63	276.66	254.98	AT1G44575	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010027,thylakoid membrane organization; GO:0010196,nonphotochemical quenching; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0051738,xanthophyll binding; 	psbS; photosystem II 22kDa protein; K03542; 	NP_001319163.1 Chlorophyll A-B binding family protein [Arabidopsis thaliana]
AT1G44810	0.779015433035226	0.324778305527397	0.0164575790297357	0.130701836020404	Up	32.34	22.54	46.20	49.66	AT1G44810	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription; GO:0046686,response to cadmium ion; 	--	NP_564491.1 DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]
AT1G45010	1.20566426970509	0.382689781085331	0.00162991089876174	0.0215513057687206	Up	17.74	14.78	39.14	37.08	AT1G45010	GO:0016020,membrane; GO:0016021,integral component of membrane; 	--	NP_175121.2 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]
AT1G47480	-2.47090948425699	1.12016012102027	0.0273942363806396	1	Down	5.45	5.45	1.07	0.92	AT1G47480	GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity; 	--	NP_564507.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT1G47720	4.41953679769973	2.00464189261746	0.02747855744543	1	Up	0.30	0.00	3.43	3.31	AT1G47720	GO:0000002,mitochondrial genome maintenance; GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0005739,mitochondrion; GO:0006260,DNA replication; GO:0006264,mitochondrial DNA replication; GO:0009295,nucleoid; GO:0042645,mitochondrial nucleoid; GO:0045910,negative regulation of DNA recombination; GO:0048046,apoplast; GO:0051096,positive regulation of helicase activity; 	--	NP_175203.2 Primosome PriB/single-strand DNA-binding protein [Arabidopsis thaliana]
AT1G47980	-0.714486652913287	0.182086600539948	8.71327929409624e-05	0.00192670641075337	Down	145.81	154.56	87.92	98.39	AT1G47980	GO:0008150,biological_process; 	--	NP_564518.1 desiccation-like protein [Arabidopsis thaliana]
AT1G48030	-0.80105971081309	0.172090296142824	3.24169148613473e-06	0.000111703285793059	Down	121.91	105.10	67.98	64.33	AT1G48030	GO:0000166,nucleotide binding; GO:0004148,dihydrolipoyl dehydrogenase activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0005759,mitochondrial matrix; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0016668,oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor; GO:0045252,oxoglutarate dehydrogenase complex; GO:0045454,cell redox homeostasis; GO:0046686,response to cadmium ion; GO:0048046,apoplast; GO:0050660,flavin adenine dinucleotide binding; GO:0050897,cobalt ion binding; 	DLD, lpd, pdhD; dihydrolipoamide dehydrogenase [EC:1.8.1.4]; K00382; 	NP_001322047.1 mitochondrial lipoamide dehydrogenase 1 [Arabidopsis thaliana]
AT1G48100	-1.311642788639	0.323369035267154	4.98819718590631e-05	0.00123019057835324	Down	35.77	32.82	16.07	11.85	AT1G48100	GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009831,plant-type cell wall modification involved in multidimensional cell growth; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0071555,cell wall organization; 	--	NP_175244.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT1G48170	1.50518569503967	0.571464398525491	0.00844079014685385	0.0783742528231452	Up	9.64	15.05	26.29	45.07	AT1G48170	GO:0000502,proteasome complex; GO:0043248,proteasome assembly; 	--	NP_564522.1 proteasome assembly chaperone [Arabidopsis thaliana]
AT1G48450	-0.909480070571354	0.233697492992491	9.95450964754246e-05	0.00213643066051495	Down	66.41	61.83	36.92	32.31	AT1G48450	GO:0005515,protein binding; GO:0016874,ligase activity; 	--	NP_001185170.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]
AT1G48570	0.662289068471674	0.225568150753266	0.00332374659440926	0.0377573960656107	Up	43.67	35.58	64.38	63.11	AT1G48570	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0046872,metal ion binding; 	--	NP_175290.1 zinc finger (Ran-binding) family protein [Arabidopsis thaliana]
AT1G48860	-0.607331492553046	0.249601716715387	0.0149659330787286	0.121025032491283	Down	42.12	48.49	34.55	25.64	AT1G48860	GO:0003824,catalytic activity; GO:0003866,3-phosphoshikimate 1-carboxyvinyltransferase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009423,chorismate biosynthetic process; GO:0009507,chloroplast; GO:0016740,transferase activity; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; 	aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]; K00800; 	NP_175317.1 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta [Arabidopsis thaliana]
AT1G48920	0.734553711867396	0.0990258392473609	1.19083174623659e-13	1.91847633922921e-11	Up	437.23	475.48	819.23	723.54	AT1G48920	GO:0000478,endonucleolytic cleavage involved in rRNA processing; GO:0001731,formation of translation preinitiation complex; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0006364,rRNA processing; GO:0010305,leaf vascular tissue pattern formation; GO:0010588,cotyledon vascular tissue pattern formation; GO:0033592,RNA strand annealing activity; GO:0034057,RNA strand-exchange activity; GO:0042254,ribosome biogenesis; GO:0043024,ribosomal small subunit binding; GO:0048364,root development; GO:0048366,leaf development; GO:0048367,shoot system development; GO:0080056,petal vascular tissue pattern formation; GO:0080057,sepal vascular tissue pattern formation; GO:0097010,eukaryotic translation initiation factor 4F complex assembly; 	NCL, NSR1; nucleolin; K11294; 	NP_175322.1 nucleolin like 1 [Arabidopsis thaliana]
AT1G49410	0.795489479065602	0.328292453297295	0.0153881692216663	0.123793929438891	Up	144.83	142.02	296.54	207.70	AT1G49410	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0005742,mitochondrial outer membrane translocase complex; GO:0008150,biological_process; GO:0015031,protein transport; GO:0016020,membrane; 	--	NP_564545.1 translocase of the outer mitochondrial membrane 6 [Arabidopsis thaliana]
AT1G49450	-0.642786023023135	0.264147389983593	0.0149562393313863	0.121025032491283	Down	45.50	42.01	31.93	24.82	AT1G49450	GO:0005515,protein binding; 	--	NP_175369.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT1G49490	-1.04285232256515	0.527824692624171	0.0481825222513267	0.27058428796057	Down	6.32	7.35	2.24	4.58	AT1G49490	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization; 	--	NP_001320463.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT1G49740	-0.973489110470764	0.242772649007034	6.07496976450031e-05	0.0014492307678582	Down	70.94	75.58	40.31	35.35	AT1G49740	GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity; GO:0009506,plasmodesma; 	--	NP_564553.1 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]
AT1G49820	0.851993721290031	0.407542065809984	0.0365669565367686	0.2274890149642	Up	12.06	11.62	16.83	26.79	AT1G49820	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009086,methionine biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019509,L-methionine salvage from methylthioadenosine; GO:0042802,identical protein binding; GO:0046522,S-methyl-5-thioribose kinase activity; 	mtnK; 5-methylthioribose kinase [EC:2.7.1.100]; K00899; 	NP_564555.1 S-methyl-5-thioribose kinase [Arabidopsis thaliana]
AT1G49950	1.38513163542853	0.345919490275022	6.22270852556619e-05	0.00148162570555947	Up	16.09	23.95	61.66	44.20	AT1G49950	GO:0000785,chromatin; GO:0000786,nucleosome; GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0003691,double-stranded telomeric DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0006357,regulation of transcription by RNA polymerase II; GO:0032991,protein-containing complex; GO:0042803,protein homodimerization activity; GO:0043565,sequence-specific DNA binding; GO:1990841,promoter-specific chromatin binding; 	--	AAL73438.1 telomere repeat binding factor 1 [Arabidopsis thaliana]
AT1G50200	0.707474612141057	0.102963416466333	6.36970816681875e-12	7.18329361903514e-10	Up	131.27	135.79	225.41	217.62	AT1G50200	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0002161,aminoacyl-tRNA editing activity; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004813,alanine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006400,tRNA modification; GO:0006412,translation; GO:0006419,alanyl-tRNA aminoacylation; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0016597,amino acid binding; GO:0016874,ligase activity; GO:0043039,tRNA aminoacylation; GO:0046872,metal ion binding; GO:0070143,mitochondrial alanyl-tRNA aminoacylation; GO:0106074,aminoacyl-tRNA metabolism involved in translational fidelity; 	AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7]; K01872; 	NP_001185186.2 Alanyl-tRNA synthetase [Arabidopsis thaliana]
AT1G50310	-0.721439442064892	0.253119975513239	0.00436934349628338	0.0469805512229601	Down	46.65	40.08	24.88	28.70	AT1G50310	GO:0008643,carbohydrate transport; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_175449.1 sugar transporter 9 [Arabidopsis thaliana]
AT1G50732	2.91726646058338	1.35303196961315	0.0310761903838307	1	Up	1.97	0.72	7.56	13.37	AT1G50732	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_001185189.1 transmembrane protein [Arabidopsis thaliana]
AT1G50900	-0.835396983736218	0.321041331325596	0.00926419256481805	0.0841921675945553	Down	91.41	72.67	50.49	42.72	AT1G50900	GO:0005515,protein binding; GO:0006886,intracellular protein transport; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0016020,membrane; GO:0090391,granum assembly; 	--	NP_564580.1 Ankyrin repeat family protein [Arabidopsis thaliana]
AT1G50920	1.1436945263561	0.132775797106273	7.07227190275795e-18	2.30872455141348e-15	Up	74.84	80.98	178.60	171.07	AT1G50920	GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; GO:0097159,organic cyclic compound binding; GO:1901363,heterocyclic compound binding; 	NOG1; nucleolar GTP-binding protein; K06943; 	NP_175505.1 Nucleolar GTP-binding protein [Arabidopsis thaliana]
AT1G51110	-1.00708084130027	0.478675364679871	0.0353879471964527	0.221992952724752	Down	16.95	14.03	8.23	7.41	AT1G51110	GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; 	--	NP_175522.2 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]
AT1G51160	0.702073705608752	0.300587124631412	0.0195082083978977	0.146933409335714	Up	82.69	50.49	106.53	113.98	AT1G51160	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0009555,pollen development; GO:0009933,meristem structural organization; GO:0016192,vesicle-mediated transport; GO:0030008,TRAPP complex; GO:0048193,Golgi vesicle transport; 	--	NP_001031168.1 SNARE-like superfamily protein [Arabidopsis thaliana]
AT1G51400	-0.902612386179079	0.333729629679915	0.00683822233571702	0.0666887956561082	Down	140.14	117.92	59.92	81.09	AT1G51400	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009535,chloroplast thylakoid membrane; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B; GO:0019904,protein domain specific binding; 	--	NP_564589.1 Photosystem II 5 kD protein [Arabidopsis thaliana]
AT1G51610	0.783840347166536	0.249649476172736	0.00169084197722669	0.0221254163792163	Up	31.55	26.80	52.80	49.25	AT1G51610	GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005783,endoplasmic reticulum; GO:0006812,cation transport; GO:0006829,zinc ion transport; GO:0006882,cellular zinc ion homeostasis; GO:0008324,cation transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:0098655,cation transmembrane transport; 	--	NP_564594.1 Cation efflux family protein [Arabidopsis thaliana]
AT1G51650	0.692065152215855	0.210244868426531	0.000995802115765045	0.014636167353158	Up	281.59	284.10	438.84	490.84	AT1G51650	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005753,mitochondrial proton-transporting ATP synthase complex; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0042776,proton motive force-driven mitochondrial ATP synthesis; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; 	ATPeF1E, ATP5E, ATP15; F-type H+-transporting ATPase subunit epsilon; K02135; 	NP_175576.1 ATP synthase epsilon chain [Arabidopsis thaliana]
AT1G51760	-0.718795328661908	0.222903526898833	0.00126108047692706	0.0175377839868612	Down	66.94	64.81	42.85	38.36	AT1G51760	GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0009611,response to wounding; GO:0009850,auxin metabolic process; GO:0010179,IAA-Ala conjugate hydrolase activity; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	--	NP_175587.1 peptidase M20/M25/M40 family protein [Arabidopsis thaliana]
AT1G52190	-0.644649382145366	0.145842135606602	9.86159329085901e-06	0.000299835943071338	Down	140.52	148.38	101.57	85.86	AT1G52190	GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0080054,low-affinity nitrate transmembrane transporter activity; 	--	NP_175630.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT1G52220	-1.04227505131352	0.242793063721215	1.76391405176527e-05	0.000503019627865476	Down	145.48	162.84	74.56	77.67	AT1G52220	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; 	--	NP_001322106.1 CURVATURE THYLAKOID protein [Arabidopsis thaliana]
AT1G52230	-0.832810731849139	0.146835572152128	1.4136820134657e-08	8.15661645443813e-07	Down	575.03	607.31	318.96	356.56	AT1G52230	GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; 	psaH; photosystem I subunit VI; K02695; 	NP_175633.1 photosystem I subunit H2 [Arabidopsis thaliana]
AT1G52300	0.828520758092508	0.135501393620085	9.68714353175315e-10	7.11059263381053e-08	Up	675.21	583.86	1147.09	1125.20	AT1G52300	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-L37e, RPL37; large subunit ribosomal protein L37e; K02922; 	NP_175640.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT1G52400	0.797573444609113	0.0794196133733879	9.91043479493482e-24	5.34517146222463e-21	Up	2695.88	2566.32	4455.75	4836.56	AT1G52400	GO:0000325,plant-type vacuole; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009625,response to insect; GO:0009651,response to salt stress; GO:0009687,abscisic acid metabolic process; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0010168,ER body; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019762,glucosinolate catabolic process; GO:0030104,water homeostasis; GO:0042802,identical protein binding; GO:0050832,defense response to fungus; GO:0051258,protein polymerization; GO:0051993,abscisic acid glucose ester beta-glucosidase activity; GO:0080119,ER body organization; 	BG1; beta-D-glucopyranosyl abscisate beta-glucosidase [EC:3.2.1.175]; K15748; 	NP_001185204.1 beta glucosidase 18 [Arabidopsis thaliana]
AT1G52570	-0.714457739250956	0.337198273366087	0.0341068618591088	0.216881679096717	Down	21.47	13.44	11.10	10.52	AT1G52570	GO:0003824,catalytic activity; GO:0004630,phospholipase D activity; GO:0005509,calcium ion binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0009395,phospholipid catabolic process; GO:0009738,abscisic acid-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity; 	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115; 	NP_001322920.1 phospholipase D alpha 2 [Arabidopsis thaliana]
AT1G52618	2.65027352425906	1.29010163191731	0.0399453345588877	1	Up	3.63	1.00	13.08	16.81	AT1G52618	GO:0003674,molecular_function; 	--	NP_001077705.1 hypothetical protein AT1G52618 [Arabidopsis thaliana]
AT1G52930	1.34012292981857	0.232398295927164	8.09385176994145e-09	4.85044595198665e-07	Up	36.25	47.33	111.08	103.61	AT1G52930	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis; 	--	NP_564618.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]
AT1G52980	0.711341073976834	0.214105145549146	0.000892494359651003	0.013419869735116	Up	37.63	46.26	79.34	59.90	AT1G52980	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0016787,hydrolase activity; GO:0042254,ribosome biogenesis; 	NUG2, GNL2; nuclear GTP-binding protein; K14537; 	CAA0290621.1 unnamed protein product [Arabidopsis thaliana]
AT1G53070	-0.921131401020413	0.271314667122259	0.000686118743076691	0.0108799182055071	Down	70.09	78.60	39.55	40.26	AT1G53070	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0008150,biological_process; GO:0030246,carbohydrate binding; GO:0048046,apoplast; GO:0050896,response to stimulus; 	--	NP_175715.1 Legume lectin family protein [Arabidopsis thaliana]
AT1G53200	1.64571930236441	0.618469230254486	0.00779191786387076	0.0737852985506235	Up	2.67	1.82	6.78	7.54	AT1G53200	GO:0000120,RNA polymerase I transcription regulator complex; GO:0003674,molecular_function; GO:0006360,transcription by RNA polymerase I; GO:0008150,biological_process; 	--	NP_175728.2 TAF RNA polymerase I subunit A [Arabidopsis thaliana]
AT1G53310	-0.62731491781523	0.113425782769942	3.19100673069888e-08	1.67022947233416e-06	Down	189.43	181.87	129.56	114.43	AT1G53310	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006099,tricarboxylic acid cycle; GO:0008152,metabolic process; GO:0008964,phosphoenolpyruvate carboxylase activity; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0016036,cellular response to phosphate starvation; GO:0016829,lyase activity; GO:0048046,apoplast; GO:0048366,leaf development; GO:0051262,protein tetramerization; 	ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]; K01595; 	NP_001031178.1 phosphoenolpyruvate carboxylase 1 [Arabidopsis thaliana]
AT1G53480	-1.99580609848731	1.0019059380946	0.0463700208436421	1	Down	8.86	11.06	3.48	1.49	AT1G53480	GO:0008150,biological_process; 	--	NP_001185210.1 mto 1 responding down 1 [Arabidopsis thaliana]
AT1G54040	1.40733912694599	0.468393181654067	0.0026592104227746	0.0316882855855129	Up	6.75	10.64	27.88	18.75	AT1G54040	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009753,response to jasmonic acid; GO:0010150,leaf senescence; GO:0019762,glucosinolate catabolic process; GO:0030234,enzyme regulator activity; GO:0042742,defense response to bacterium; GO:0050790,regulation of catalytic activity; GO:0080028,nitrile biosynthetic process; 	--	NP_175806.3 epithiospecifier protein [Arabidopsis thaliana]
AT1G54060	0.738072052675464	0.36582260791298	0.0436362537816949	0.25420726982869	Up	14.64	16.76	24.31	29.00	AT1G54060	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription; GO:0009733,response to auxin; GO:0009793,embryo development ending in seed dormancy; GO:0010431,seed maturation; GO:0043565,sequence-specific DNA binding; 	--	VYS49050.1 unnamed protein product [Arabidopsis thaliana]
AT1G54540	-3.19778599886272	1.55225613382349	0.0393900201962092	1	Down	6.51	3.58	0.00	1.21	AT1G54540	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_175856.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]
AT1G54860	-1.16371674395853	0.507529441800189	0.0218534806684371	0.159306378262739	Down	30.31	32.03	17.91	10.07	AT1G54860	GO:0008150,biological_process; 	--	NP_564669.1 Glycoprotein membrane precursor GPI-anchored [Arabidopsis thaliana]
AT1G55240	2.57472808956117	0.915636069476471	0.00492412804621392	1	Up	2.50	0.55	5.77	12.98	AT1G55240	GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_175920.2 proteinase inhibitor I4, serpin (DUF716) [Arabidopsis thaliana]
AT1G55560	-1.38122450075846	0.357988035199152	0.000114179405387186	0.00239660833135032	Down	23.00	23.88	9.82	8.41	AT1G55560	GO:0005507,copper ion binding; GO:0016491,oxidoreductase activity; 	E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3]; K00423; 	NP_564697.1 SKU5 similar 14 [Arabidopsis thaliana]
AT1G56045	1.14713906210441	0.25385567358278	6.21725471192188e-06	0.000201370873893971	Up	393.49	462.19	930.14	995.54	AT1G56045	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex; 	RP-L41e, RPL41; large subunit ribosomal protein L41e; K02928; 	--
AT1G56360	-0.7069009685215	0.349027400365122	0.0428319307055787	0.250724803080954	Down	27.59	21.69	16.38	14.24	AT1G56360	GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	ACP7; acid phosphatase type 7; K22390; 	NP_176033.1 purple acid phosphatase 6 [Arabidopsis thaliana]
AT1G56460	1.61029987386209	0.54362689578818	0.00305507192863114	0.0352869341477368	Up	3.44	3.17	8.12	12.47	AT1G56460	GO:0003674,molecular_function; GO:0006338,chromatin remodeling; GO:0031011,Ino80 complex; 	--	NP_001320733.1 HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]
AT1G56680	-3.72898180696413	1.22200858536178	0.00227687016126715	1	Down	10.02	5.65	1.11	0.00	AT1G56680	GO:0004568,chitinase activity; GO:0005975,carbohydrate metabolic process; GO:0006032,chitin catabolic process; GO:0008061,chitin binding; GO:0016998,cell wall macromolecule catabolic process; 	E3.2.1.14; chitinase [EC:3.2.1.14]; K01183; 	NP_001320281.1 Chitinase family protein [Arabidopsis thaliana]
AT1G57660	0.707771972953334	0.249755300879551	0.0045989235294378	0.0488438753276335	Up	102.71	97.80	197.70	134.09	AT1G57660	GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L21e, RPL21; large subunit ribosomal protein L21e; K02889; 	NP_564724.1 Translation protein SH3-like family protein [Arabidopsis thaliana]
AT1G57750	-0.702458655465233	0.113256291664923	5.56152858797562e-10	4.20675378864863e-08	Down	350.81	382.64	235.36	222.42	AT1G57750	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0010025,wax biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0080133,midchain alkane hydroxylase activity; 	MAH1, CYP96A15; midchain alkane hydroxylase; K15405; 	NP_176086.1 cytochrome P450, family 96, subfamily A, polypeptide 15 [Arabidopsis thaliana]
AT1G57860	1.38890155902353	0.39680766201881	0.000464929512616787	0.00791244586706968	Up	22.25	27.05	76.35	54.34	AT1G57860	GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L21e, RPL21; large subunit ribosomal protein L21e; K02889; 	NP_564724.1 Translation protein SH3-like family protein [Arabidopsis thaliana]
AT1G57990	-0.884607007599622	0.283588672786737	0.00181262059512613	0.0234224567526455	Down	47.34	44.56	24.74	25.89	AT1G57990	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0005886,plasma membrane; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport; 	--	NP_176100.1 purine permease 18 [Arabidopsis thaliana]
AT1G58055	-2.52631107142293	1.16158096891218	0.0296383451172892	1	Down	20.50	27.90	0.00	9.04	AT1G58055	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001031204.1 Defensin-like (DEFL) family protein [Arabidopsis thaliana]
AT1G58525	1.92220455845953	0.86310185535341	0.0259413331559209	1	Up	2.50	1.50	11.15	4.22	AT1G58525	GO:0006629,lipid metabolic process; GO:0016298,lipase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_001154437.1 GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]
AT1G59600	0.719154831781667	0.326177448398708	0.0274683917210242	0.187635131772745	Up	25.47	35.65	39.80	62.74	AT1G59600	--	--	NP_564748.1 ZCW7 [Arabidopsis thaliana]
AT1G59650	0.835226986489439	0.395515496563833	0.0347085192318413	0.219233439986747	Up	10.30	9.40	16.43	19.36	AT1G59650	GO:0005886,plasma membrane; 	--	NP_564750.1 CW14 protein (DUF1336) [Arabidopsis thaliana]
AT1G59740	-0.974822173659534	0.290867743204983	0.000803960669000237	0.0124043931578954	Down	28.89	32.62	17.29	14.41	AT1G59740	GO:0006857,oligopeptide transport; GO:0009624,response to nematode; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_176183.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT1G59760	0.680050928226637	0.267464069606983	0.011003489579519	0.0963290672081388	Up	13.42	11.02	20.36	19.45	AT1G59760	GO:0000166,nucleotide binding; GO:0000460,maturation of 5.8S rRNA; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006401,RNA catabolic process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0019843,rRNA binding; GO:0031125,rRNA 3'-end processing; 	MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]; K12598; 	NP_176185.1 RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana]
AT1G60640	0.86335136318295	0.292717506972654	0.00318355169890323	0.0364316963329286	Up	27.94	27.69	58.06	44.53	AT1G60640	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001320731.1 stress response protein [Arabidopsis thaliana]
AT1G60950	-0.997939762987391	0.123175006177891	5.41501164281814e-16	1.31712194959135e-13	Down	2056.72	1694.24	877.21	1032.61	AT1G60950	GO:0005515,protein binding; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009643,photosynthetic acclimation; GO:0009767,photosynthetic electron transport chain; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; 	petF; ferredoxin; K02639; 	NP_176291.1 2Fe-2S ferredoxin-like superfamily protein [Arabidopsis thaliana]
AT1G61240	-0.687724886005683	0.299071095985671	0.0214744961111739	0.157441562800894	Down	40.29	39.80	19.94	30.89	AT1G61240	--	--	NP_001077754.1 lysine ketoglutarate reductase trans-splicing-like protein (DUF707) [Arabidopsis thaliana]
AT1G61255	-1.85316680055999	0.724529050846156	0.0105350705155507	1	Down	18.44	36.36	10.15	5.02	AT1G61255	--	--	CAD5315979.1 unnamed protein product [Arabidopsis thaliana]
AT1G61260	-1.59130813094231	0.734738526940233	0.0303252841709756	1	Down	9.28	8.96	3.59	2.51	AT1G61260	GO:0016020,membrane; 	--	NP_176321.2 cotton fiber (DUF761) [Arabidopsis thaliana]
AT1G61550	0.85840948153358	0.431685421953592	0.0467556460687999	0.265370860372953	Up	5.84	5.02	12.19	7.74	AT1G61550	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0031625,ubiquitin protein ligase binding; GO:0045087,innate immune response; GO:0048544,recognition of pollen; GO:0106310,protein serine kinase activity; 	--	NP_176349.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]
AT1G61760	-3.17616629205682	0.454865917803493	2.8967797466696e-12	3.52299536837612e-10	Down	484.55	724.07	84.99	50.77	AT1G61760	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0098542,defense response to other organism; 	--	NP_176369.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]
AT1G62380	-0.892753539468733	0.0790656481345926	1.44886441235905e-29	1.49776358627617e-26	Down	2840.43	2773.47	1556.53	1515.42	AT1G62380	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009693,ethylene biosynthetic process; GO:0009727,detection of ethylene stimulus; GO:0009815,1-aminocyclopropane-1-carboxylate oxidase activity; GO:0010030,positive regulation of seed germination; GO:0016491,oxidoreductase activity; GO:0031418,L-ascorbic acid binding; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0071398,cellular response to fatty acid; GO:0071732,cellular response to nitric oxide; 	E1.14.17.4; aminocyclopropanecarboxylate oxidase [EC:1.14.17.4]; K05933; 	NP_176428.1 ACC oxidase 2 [Arabidopsis thaliana]
AT1G62480	-0.733190918864308	0.136593970529062	7.97617378223854e-08	3.8202484852768e-06	Down	714.10	712.49	473.46	396.95	AT1G62480	GO:0005634,nucleus; GO:0005829,cytosol; 	--	NP_564795.1 Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]
AT1G62750	-0.729813838731969	0.132314126410011	3.47262883688186e-08	1.80999834964368e-06	Down	138.06	138.06	80.49	88.90	AT1G62750	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003746,translation elongation factor activity; GO:0003924,GTPase activity; GO:0005524,ATP binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009791,post-embryonic development; GO:0009845,seed germination; GO:0009941,chloroplast envelope; GO:0032543,mitochondrial translation; GO:0032790,ribosome disassembly; GO:0048046,apoplast; 	--	NP_564801.1 Translation elongation factor EFG/EF2 protein [Arabidopsis thaliana]
AT1G62780	-1.27330856477882	0.255337408922465	6.13975382956159e-07	2.45329163188144e-05	Down	117.14	106.03	42.54	51.64	AT1G62780	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; 	--	NP_176466.1 dimethylallyl, adenosine tRNA methylthiotransferase [Arabidopsis thaliana]
AT1G62940	-1.12735656752076	0.22990787918818	9.41370982432211e-07	3.61538917556396e-05	Down	79.39	81.73	28.79	46.60	AT1G62940	GO:0000166,nucleotide binding; GO:0001676,long-chain fatty acid metabolic process; GO:0004467,long-chain fatty acid-CoA ligase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009555,pollen development; GO:0016020,membrane; GO:0016405,CoA-ligase activity; GO:0016874,ligase activity; GO:0031956,medium-chain fatty acid-CoA ligase activity; GO:0046949,fatty-acyl-CoA biosynthetic process; GO:0080110,sporopollenin biosynthetic process; 	4CL; 4-coumarate--CoA ligase [EC:6.2.1.12]; K01904; 	NP_176482.1 acyl-CoA synthetase 5 [Arabidopsis thaliana]
AT1G63050	-0.925000611058347	0.44256329526621	0.0366090068982688	0.227522410106726	Down	19.11	13.63	7.97	9.62	AT1G63050	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006641,triglyceride metabolic process; GO:0008654,phospholipid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019375,galactolipid biosynthetic process; GO:0019432,triglyceride biosynthetic process; GO:0030258,lipid modification; GO:0045017,glycerolipid biosynthetic process; GO:0047184,1-acylglycerophosphocholine O-acyltransferase activity; GO:0071617,lysophospholipid acyltransferase activity; GO:0106262,1-acylglycerophosphoethanolamine O-acyltransferase activity; GO:0106263,1-acylglycerophosphoserine O-acyltransferase activity; 	LPT1, ALE1; lysophospholipid acyltransferase [EC:2.3.1.51 2.3.1.23 2.3.1.-]; K13519; 	NP_176493.1 MBOAT (membrane bound O-acyl transferase) family protein [Arabidopsis thaliana]
AT1G63060	-1.59623628250884	0.492044063083103	0.00117825620907167	0.0166472303798794	Down	52.94	43.21	15.85	16.50	AT1G63060	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_564808.1 ribosome biogenesis NEP1-like protein [Arabidopsis thaliana]
AT1G63220	-1.03646502477306	0.458777095005729	0.0238715144588768	0.170098039600469	Down	46.44	58.00	32.68	18.56	AT1G63220	GO:0003723,RNA binding; GO:0006952,defense response; GO:0046872,metal ion binding; 	--	NP_176511.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]
AT1G63300	-1.42047312922148	0.715478549108716	0.0471058878873739	1	Down	2.35	4.08	1.31	1.12	AT1G63300	GO:0003674,molecular_function; 	--	NP_176519.1 Myosin heavy chain-related protein [Arabidopsis thaliana]
AT1G63780	1.0476671917694	0.306137142279611	0.000621131235806591	0.0100589203396616	Up	26.21	24.44	53.00	53.43	AT1G63780	GO:0003729,mRNA binding; GO:0005730,nucleolus; GO:0005732,sno(s)RNA-containing ribonucleoprotein complex; GO:0006364,rRNA processing; GO:0015030,Cajal body; GO:0016363,nuclear matrix; GO:0019843,rRNA binding; GO:0030515,snoRNA binding; GO:0032040,small-subunit processome; GO:0034457,Mpp10 complex; GO:0042134,rRNA primary transcript binding; GO:1990904,ribonucleoprotein complex; 	IMP4; U3 small nucleolar ribonucleoprotein protein IMP4; K14561; 	NP_176564.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]
AT1G63810	0.837474697320804	0.270498740972806	0.00196124452064851	0.0249274982363164	Up	9.63	10.83	18.36	18.80	AT1G63810	GO:0003674,molecular_function; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006409,tRNA export from nucleus; GO:0032040,small-subunit processome; GO:0032545,CURI complex; GO:0034456,UTP-C complex; 	UTP22, NOL6; U3 small nucleolar RNA-associated protein 22; K14544; 	NP_001320199.1 nucleolar protein [Arabidopsis thaliana]
AT1G63900	0.844351593317676	0.335090703009478	0.0117431446814471	0.10088207048016	Up	26.65	17.97	36.45	45.21	AT1G63900	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005777,peroxisome; GO:0006996,organelle organization; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009658,chloroplast organization; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016558,protein import into peroxisome matrix; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031648,protein destabilization; GO:0031999,negative regulation of fatty acid beta-oxidation; GO:0045037,protein import into chloroplast stroma; GO:0046872,metal ion binding; GO:1904215,regulation of protein import into chloroplast stroma; 	--	NP_001319312.1 E3 Ubiquitin ligase family protein [Arabidopsis thaliana]
AT1G63940	-0.761429905279522	0.204643861197292	0.000198627160508292	0.0038319905538186	Down	73.76	87.10	44.44	52.20	AT1G63940	GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010319,stromule; GO:0016491,oxidoreductase activity; GO:0016651,oxidoreductase activity, acting on NAD(P)H; GO:0016656,monodehydroascorbate reductase (NADH) activity; GO:0050660,flavin adenine dinucleotide binding; 	E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4]; K08232; 	NP_849839.1 monodehydroascorbate reductase 6 [Arabidopsis thaliana]
AT1G63970	-0.722397134059572	0.342301046527789	0.0348226580100392	0.21972282432072	Down	50.44	45.42	29.53	29.52	AT1G63970	GO:0008299,isoprenoid biosynthetic process; GO:0008685,2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015995,chlorophyll biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016117,carotenoid biosynthetic process; GO:0016829,lyase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0046872,metal ion binding; 	ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]; K01770; 	NP_850971.1 isoprenoid F [Arabidopsis thaliana]
AT1G64030	-2.88943034830633	0.943933515705351	0.002205601828885	1	Down	6.88	7.56	0.87	1.12	AT1G64030	GO:0003674,molecular_function; GO:0004867,serine-type endopeptidase inhibitor activity; GO:0005615,extracellular space; GO:0005829,cytosol; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; GO:0010466,negative regulation of peptidase activity; GO:0010951,negative regulation of endopeptidase activity; GO:0030414,peptidase inhibitor activity; 	SERPINB; serpin B; K13963; 	NP_176586.1 serpin 3 [Arabidopsis thaliana]
AT1G64090	-0.732806631966734	0.199414862670316	0.000238050322136381	0.00450154610686251	Down	159.64	139.17	98.84	83.47	AT1G64090	GO:0005515,protein binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005789,endoplasmic reticulum membrane; GO:0009504,cell plate; GO:0009506,plasmodesma; GO:0009510,plasmodesmatal desmotubule; GO:0009617,response to bacterium; GO:0016020,membrane; GO:0071782,endoplasmic reticulum tubular network; GO:0071786,endoplasmic reticulum tubular network organization; GO:0098554,cytoplasmic side of endoplasmic reticulum membrane; 	--	NP_001185307.1 Reticulan like protein B3 [Arabidopsis thaliana]
AT1G64230	0.789927344152434	0.225445267731579	0.000458576387460284	0.00783559240557138	Up	101.40	88.98	149.00	186.24	AT1G64230	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061631,ubiquitin conjugating enzyme activity; 	UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23]; K06689; 	NP_001031228.1 ubiquitin-conjugating enzyme 28 [Arabidopsis thaliana]
AT1G64340	-4.88704463755971	2.21380319361259	0.0272768116027471	1	Down	3.55	1.63	0.00	0.00	AT1G64340	GO:0008150,biological_process; 	--	NP_001320923.1 Serine/Threonine-kinase [Arabidopsis thaliana]
AT1G64360	-1.91694996708804	0.625338385024099	0.00217335259102403	0.0269604388916531	Down	44.50	77.85	13.08	20.18	AT1G64360	GO:0006979,response to oxidative stress; GO:0010150,leaf senescence; 	--	NP_564832.1 hypothetical protein AT1G64360 [Arabidopsis thaliana]
AT1G64370	-1.09633647667945	0.230739822612739	2.02016161836409e-06	7.32751604555745e-05	Down	164.48	198.52	89.86	82.40	AT1G64370	GO:0008150,biological_process; 	--	NP_564833.1 filaggrin-like protein [Arabidopsis thaliana]
AT1G64400	1.03617766524654	0.348437893473636	0.00294155820592228	0.0342629385394046	Up	8.56	9.02	16.72	19.98	AT1G64400	GO:0000166,nucleotide binding; GO:0001676,long-chain fatty acid metabolic process; GO:0004467,long-chain fatty acid-CoA ligase activity; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016020,membrane; GO:0016874,ligase activity; 	ACSL, fadD; long-chain acyl-CoA synthetase [EC:6.2.1.3]; K01897; 	NP_176622.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]
AT1G64450	1.53426819968496	0.400325122629982	0.000126819041772684	0.00263515948608065	Up	10.70	9.51	29.19	30.35	AT1G64450	GO:0003674,molecular_function; GO:0016020,membrane; 	--	NP_176626.1 Glycine-rich protein family [Arabidopsis thaliana]
AT1G64490	1.62739778837578	0.780439511056723	0.0370482063037068	1	Up	7.50	6.87	15.30	30.08	AT1G64490	GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0060261,positive regulation of transcription initiation by RNA polymerase II; 	--	NP_564835.1 DEK, chromatin associated protein [Arabidopsis thaliana]
AT1G64510	-0.785277058290715	0.236487590334309	0.00089829118776878	0.0134570806073995	Down	130.27	149.47	97.45	66.69	AT1G64510	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0005840,ribosome; GO:0006412,translation; GO:0006414,translational elongation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0019843,rRNA binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6; K02990; 	NP_176632.1 Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]
AT1G64600	0.865621523177504	0.429336069818616	0.0437804933215751	0.254497197588631	Up	8.27	8.14	11.71	18.81	AT1G64600	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0006412,translation; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; 	--	NP_176641.2 copper ion binding / methyltransferase [Arabidopsis thaliana]
AT1G64940	-5.36611361499976	2.01898824148141	0.00786471596006503	1	Down	1.37	2.35	0.00	0.00	AT1G64940	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_176674.1 cytochrome P450, family 87, subfamily A, polypeptide 6 [Arabidopsis thaliana]
AT1G65030	1.01529549677057	0.389021967255863	0.00905774970097493	0.082618665471025	Up	13.09	13.40	27.63	26.75	AT1G65030	GO:0005515,protein binding; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_176683.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT1G65150	0.68960615360167	0.236308259182935	0.0035200403413465	0.0395884863412542	Up	78.36	53.18	103.39	112.47	AT1G65150	GO:0004197,cysteine-type endopeptidase activity; GO:0004843,cysteine-type deubiquitinase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0016579,protein deubiquitination; GO:0031647,regulation of protein stability; 	--	NP_176694.1 TRAF-like family protein [Arabidopsis thaliana]
AT1G65270	-0.697390468543857	0.251400932711261	0.00553687797637811	0.0560693643240575	Down	82.09	92.87	63.73	45.40	AT1G65270	GO:0000325,plant-type vacuole; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0008150,biological_process; 	--	NP_564847.1 ER membrane protein complex subunit-like protein [Arabidopsis thaliana]
AT1G65480	-1.59342737427419	0.803829642210113	0.0474462481148715	1	Down	14.55	14.44	8.18	1.31	AT1G65480	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0008429,phosphatidylethanolamine binding; GO:0009908,flower development; GO:0009909,regulation of flower development; GO:0009911,positive regulation of flower development; GO:0010022,meristem determinacy; GO:0010119,regulation of stomatal movement; GO:0030154,cell differentiation; GO:0048573,photoperiodism, flowering; 	FT; protein FLOWERING LOCUS T; K16223; 	NP_001320342.1 PEBP (phosphatidylethanolamine-binding protein) family protein [Arabidopsis thaliana]
AT1G65490	1.76021526297958	0.608560687592587	0.00382282208099605	0.0424929282390287	Up	9.06	16.09	46.20	40.02	AT1G65490	GO:0005886,plasma membrane; GO:0009617,response to bacterium; GO:0009723,response to ethylene; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0030275,LRR domain binding; GO:0033612,receptor serine/threonine kinase binding; GO:0048046,apoplast; GO:0071456,cellular response to hypoxia; 	--	NP_001320660.1 transmembrane protein [Arabidopsis thaliana]
AT1G65730	-0.847863910663196	0.279970409752331	0.002458480074213	0.0298409445407165	Down	26.64	28.15	16.98	13.85	AT1G65730	GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; 	--	NP_176750.1 YELLOW STRIPE like 7 [Arabidopsis thaliana]
AT1G65840	1.45936377953788	0.410596628638122	0.000379056202305858	0.00660420251348899	Up	8.78	5.86	18.97	22.07	AT1G65840	GO:0005777,peroxisome; GO:0006598,polyamine catabolic process; GO:0016491,oxidoreductase activity; GO:0046203,spermidine catabolic process; GO:0046208,spermine catabolic process; GO:0046592,polyamine oxidase activity; GO:0052894,norspermine:oxygen oxidoreductase activity; GO:0052895,N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity; GO:0052901,spermine:oxygen oxidoreductase (spermidine-forming) activity; GO:0052902,spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity; 	PAO4, PAO3, PAO2; polyamine oxidase [EC:1.5.3.17 1.5.3.-]; K17839; 	NP_176759.1 polyamine oxidase 4 [Arabidopsis thaliana]
AT1G65930	-0.617016552028185	0.153639515192967	5.9193832172284e-05	0.00142030848761544	Down	159.80	169.16	107.56	110.48	AT1G65930	GO:0000287,magnesium ion binding; GO:0004450,isocitrate dehydrogenase (NADP+) activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006099,tricarboxylic acid cycle; GO:0006102,isocitrate metabolic process; GO:0006739,NADP metabolic process; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009570,chloroplast stroma; GO:0010043,response to zinc ion; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0051287,NAD binding; 	IDH1, IDH2, icd; isocitrate dehydrogenase [EC:1.1.1.42]; K00031; 	NP_176768.1 cytosolic NADP+-dependent isocitrate dehydrogenase [Arabidopsis thaliana]
AT1G66200	-0.639802494659752	0.116305507393212	3.77534585850212e-08	1.95138189061328e-06	Down	500.16	496.95	301.80	349.26	AT1G66200	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004356,glutamate-ammonia ligase activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006542,glutamine biosynthetic process; GO:0006807,nitrogen compound metabolic process; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016874,ligase activity; GO:0022626,cytosolic ribosome; GO:0042128,nitrate assimilation; GO:0043436,oxoacid metabolic process; GO:0048046,apoplast; GO:1901149,salicylic acid binding; 	glnA, GLUL; glutamine synthetase [EC:6.3.1.2]; K01915; 	NP_176794.1 hypothetical protein AT1G66200 [Arabidopsis thaliana]
AT1G66430	-0.900772959177897	0.192679306469112	2.93974424469676e-06	0.000103015613998484	Down	109.74	109.02	60.77	58.22	AT1G66430	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006000,fructose metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0008865,fructokinase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016051,carbohydrate biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019252,starch biosynthetic process; GO:0046835,carbohydrate phosphorylation; 	E2.7.1.4, scrK; fructokinase [EC:2.7.1.4]; K00847; 	NP_564875.2 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]
AT1G66580	0.818124156115206	0.118914705576787	5.98844323988801e-12	6.81528792576245e-10	Up	407.37	466.68	778.26	787.51	AT1G66580	GO:0000027,ribosomal large subunit assembly; GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0010224,response to UV-B; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0032502,developmental process; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L10e, RPL10; large subunit ribosomal protein L10e; K02866; 	NP_564878.1 senescence associated gene 24 [Arabidopsis thaliana]
AT1G66600	5.06810423228701	2.43075147927122	0.0370697711347549	1	Up	0.00	0.00	1.86	2.39	AT1G66600	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009738,abscisic acid-activated signaling pathway; GO:0043565,sequence-specific DNA binding; 	--	NP_176833.1 ABA overly sensitive mutant 3 [Arabidopsis thaliana]
AT1G66850	-0.821395909484968	0.147552851924347	2.59473081067456e-08	1.37553998745375e-06	Down	784.00	870.85	490.34	460.49	AT1G66850	GO:0006869,lipid transport; 	--	NP_176857.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT1G67070	-1.53191146288168	0.672972160928111	0.0228258442705076	1	Down	7.13	9.56	3.26	2.58	AT1G67070	GO:0004476,mannose-6-phosphate isomerase activity; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0008270,zinc ion binding; GO:0009298,GDP-mannose biosynthetic process; GO:0009646,response to absence of light; GO:0009744,response to sucrose; GO:0010043,response to zinc ion; GO:0016853,isomerase activity; GO:0019853,L-ascorbic acid biosynthetic process; GO:0033591,response to L-ascorbic acid; GO:0046680,response to DDT; GO:0046686,response to cadmium ion; GO:0046872,metal ion binding; 	manA, MPI; mannose-6-phosphate isomerase [EC:5.3.1.8]; K01809; 	NP_001319330.1 Mannose-6-phosphate isomerase, type I [Arabidopsis thaliana]
AT1G67120	0.756103801874675	0.179723239599985	2.58731347125121e-05	0.000703851394975246	Up	4.96	5.21	8.83	8.62	AT1G67120	GO:0000027,ribosomal large subunit assembly; GO:0000055,ribosomal large subunit export from nucleus; GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0009506,plasmodesma; GO:0009553,embryo sac development; GO:0009738,abscisic acid-activated signaling pathway; GO:0009941,chloroplast envelope; GO:0016887,ATP hydrolysis activity; GO:0030687,preribosome, large subunit precursor; GO:0048638,regulation of developmental growth; 	MDN1, REA1; midasin; K14572; 	NP_176883.5 midasin-like protein [Arabidopsis thaliana]
AT1G67290	-0.660104444486313	0.160142340399781	3.75620447557525e-05	0.000958759599166891	Down	105.73	96.70	64.28	65.96	AT1G67290	GO:0004031,aldehyde oxidase activity; GO:0005576,extracellular region; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; 	--	NP_176897.1 glyoxal oxidase-related protein [Arabidopsis thaliana]
AT1G67430	0.788088062400206	0.123900606700601	2.00905255401942e-10	1.69539434915721e-08	Up	575.52	708.14	1118.43	1133.83	AT1G67430	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L17e, RPL17; large subunit ribosomal protein L17e; K02880; 	NP_176910.1 Ribosomal protein L22p/L17e family protein [Arabidopsis thaliana]
AT1G67860	-1.09471645475396	0.404863034081763	0.00685271928809893	0.0667252612000528	Down	185.85	161.89	119.60	43.93	AT1G67860	--	--	NP_564910.1 transmembrane protein [Arabidopsis thaliana]
AT1G67865	-1.14189379841924	0.314925560306774	0.000287938346424977	0.00525470265170505	Down	241.48	196.52	90.28	112.26	AT1G67865	GO:0005575,cellular_component; GO:0050832,defense response to fungus; 	--	NP_001321801.1 hypothetical protein AT1G67865 [Arabidopsis thaliana]
AT1G67870	-1.44047400376669	0.222770664248086	1.00514954679417e-10	9.10137235619104e-09	Down	195.24	177.80	53.83	86.76	AT1G67870	GO:0008150,biological_process; 	--	KAG7658789.1 hypothetical protein ISN44_As01g057450 [Arabidopsis suecica]
AT1G67990	-0.686572304199976	0.224151031338992	0.00219137589427994	0.0271568611074352	Down	117.48	140.12	79.31	83.43	AT1G67990	GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009699,phenylpropanoid biosynthetic process; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042409,caffeoyl-CoA O-methyltransferase activity; GO:0046872,metal ion binding; GO:0048316,seed development; GO:0080012,trihydroxyferuloyl spermidine O-methyltransferase activity; GO:0080076,caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity; GO:0080077,trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity; GO:0080078,tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity; GO:0080088,spermidine hydroxycinnamate conjugate biosynthetic process; 	ATTSM1; putative caffeoyl-CoA 3-O-methyltransferase [EC:2.1.1.-]; K13067; 	NP_564917.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT1G68010	-0.632206220472146	0.153178880485523	3.67140897500632e-05	0.000942936404450382	Down	173.80	200.70	126.27	119.09	AT1G68010	GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008266,poly(U) RNA binding; GO:0008465,glycerate dehydrogenase activity; GO:0009507,chloroplast; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016618,hydroxypyruvate reductase activity; GO:0030267,glyoxylate reductase (NADP+) activity; GO:0042631,cellular response to water deprivation; GO:0048046,apoplast; GO:0051287,NAD binding; GO:0071482,cellular response to light stimulus; 	HPR1; glycerate dehydrogenase [EC:1.1.1.29]; K15893; 	NP_176968.1 hydroxypyruvate reductase [Arabidopsis thaliana]
AT1G68220	-0.800276772370595	0.30244093783618	0.00814354468053298	0.0761845186742169	Down	82.35	71.81	42.88	47.25	AT1G68220	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_564925.1 aerobic coproporphyrinogen-III oxidase (DUF1218) [Arabidopsis thaliana]
AT1G68550	2.20646245799345	0.575171379642959	0.000124961495613434	0.00261407648074983	Up	3.84	3.96	21.80	14.68	AT1G68550	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; 	--	NP_177022.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]
AT1G68600	-0.914398680479145	0.39257682323376	0.0198472935708511	0.148854701781383	Down	16.11	22.02	8.57	12.10	AT1G68600	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006811,ion transport; GO:0009705,plant-type vacuole membrane; GO:0015743,malate transport; GO:0016020,membrane; GO:0098656,anion transmembrane transport; 	--	NP_564935.1 aluminum activated malate transporter family protein [Arabidopsis thaliana]
AT1G68740	-0.841664575645014	0.400898933852947	0.0357778421960222	0.223799207472644	Down	17.47	16.85	14.20	5.06	AT1G68740	GO:0000822,inositol hexakisphosphate binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006817,phosphate ion transport; GO:0015114,phosphate ion transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016036,cellular response to phosphate starvation; GO:0035435,phosphate ion transmembrane transport; 	--	NP_564940.1 EXS (ERD1/XPR1/SYG1) family protein [Arabidopsis thaliana]
AT1G68875	-1.22763838793569	0.152040475359233	6.77991093710814e-16	1.55749620694123e-13	Down	534.51	579.11	245.42	237.56	AT1G68875	GO:0008150,biological_process; 	--	NP_564949.1 hypothetical protein AT1G68875 [Arabidopsis thaliana]
AT1G69040	-0.773346210432506	0.284270688524959	0.00651917320343905	0.0642337915716135	Down	37.34	39.15	21.46	24.10	AT1G69040	GO:0005515,protein binding; GO:0005829,cytosol; GO:0006521,regulation of cellular amino acid metabolic process; GO:0009506,plasmodesma; GO:0009735,response to cytokinin; GO:0016597,amino acid binding; 	--	NP_974107.1 ACT domain repeat 4 [Arabidopsis thaliana]
AT1G69100	2.87697388863874	1.31127263317757	0.0282331217022921	1	Up	1.04	0.00	4.79	3.08	AT1G69100	GO:0003674,molecular_function; GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; 	CTSD; cathepsin D [EC:3.4.23.5]; K01379; 	NP_001320489.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT1G69500	-1.19670487557746	0.312018925951897	0.000125380562453277	0.00261842740274899	Down	33.02	29.27	14.35	13.22	AT1G69500	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0018685,alkane 1-monooxygenase activity; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0080110,sporopollenin biosynthetic process; GO:0102033,long-chain fatty acid omega-hydroxylase activity; 	CYP704B1; long-chain fatty acid omega-monooxygenase [EC:1.14.14.80]; K20495; 	NP_177109.3 cytochrome P450, family 704, subfamily B, polypeptide 1 [Arabidopsis thaliana]
AT1G69588	1.42841449123075	0.719759174051659	0.0471920192188804	1	Up	11.87	6.87	31.50	19.67	AT1G69588	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0009266,response to temperature stimulus; GO:0009734,auxin-activated signaling pathway; GO:0010078,maintenance of root meristem identity; GO:0010088,phloem development; GO:0010928,regulation of auxin mediated signaling pathway; GO:0030154,cell differentiation; GO:0033612,receptor serine/threonine kinase binding; GO:0045168,cell-cell signaling involved in cell fate commitment; GO:0045595,regulation of cell differentiation; GO:0048046,apoplast; GO:0080092,regulation of pollen tube growth; 	--	NP_001077799.1 CLAVATA3/ESR-RELATED 45 [Arabidopsis thaliana]
AT1G69600	1.7413943620844	0.777249002310457	0.0250611530450532	1	Up	3.54	4.24	6.94	19.64	AT1G69600	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0042803,protein homodimerization activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; 	--	NP_177118.1 zinc finger homeodomain 1 [Arabidopsis thaliana]
AT1G69620	0.742205156576696	0.21433659778674	0.000534582021013513	0.00885379168314102	Up	175.72	163.80	320.58	255.47	AT1G69620	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	RP-L34e, RPL34; large subunit ribosomal protein L34e; K02915; 	NP_177120.1 ribosomal protein L34 [Arabidopsis thaliana]
AT1G70600	0.700967344260448	0.154973616115975	6.09289425583736e-06	0.000197859563465085	Up	279.45	321.74	491.25	501.69	AT1G70600	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae; K02900; 	NP_177217.1 Ribosomal protein L18e/L15 superfamily protein [Arabidopsis thaliana]
AT1G70780	1.60491797782276	0.252206159209337	1.97186594948664e-10	1.6754107605056e-08	Up	72.56	60.27	193.85	217.42	AT1G70780	GO:0003674,molecular_function; 	--	NP_565000.1 hypothetical protein AT1G70780 [Arabidopsis thaliana]
AT1G70820	-0.660643603738062	0.252908703182642	0.00899663024096715	0.0821820310303369	Down	81.47	46.86	36.26	46.38	AT1G70820	GO:0004615,phosphomannomutase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016868,intramolecular transferase activity, phosphotransferases; 	--	NP_177239.1 phosphoglucomutase, putative / glucose phosphomutase [Arabidopsis thaliana]
AT1G70830	-0.875778979678679	0.139214264252899	3.15689571465664e-10	2.54294099612439e-08	Down	615.70	516.79	274.01	353.97	AT1G70830	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006952,defense response; 	--	NP_001077807.1 MLP-like protein 28 [Arabidopsis thaliana]
AT1G71170	-1.0477540146654	0.27600529589545	0.000146968088795135	0.00297412584258345	Down	74.45	65.81	31.12	38.08	AT1G71170	GO:0005739,mitochondrion; GO:0006574,valine catabolic process; GO:0008442,3-hydroxyisobutyrate dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0050661,NADP binding; GO:0051287,NAD binding; 	HIBADH, mmsB; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]; K00020; 	NP_565013.2 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]
AT1G71697	-0.876429185948177	0.377707937257457	0.0203198658572849	0.151167248249735	Down	28.58	30.18	13.94	18.75	AT1G71697	GO:0000166,nucleotide binding; GO:0004103,choline kinase activity; GO:0004305,ethanolamine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006646,phosphatidylethanolamine biosynthetic process; GO:0006656,phosphatidylcholine biosynthetic process; GO:0006657,CDP-choline pathway; GO:0008654,phospholipid biosynthetic process; GO:0009611,response to wounding; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; 	CHK; choline/ethanolamine kinase [EC:2.7.1.32 2.7.1.82]; K14156; 	NP_177315.1 choline kinase 1 [Arabidopsis thaliana]
AT1G71840	0.656104426490618	0.207766133647461	0.00158910707159097	0.0211738702718432	Up	48.62	53.23	80.50	82.58	AT1G71840	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005829,cytosol; GO:0110165,cellular anatomical entity; 	--	NP_177329.2 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT1G71950	1.80221250347564	0.345220911687833	1.78477739187323e-07	7.96408760654224e-06	Up	27.93	34.46	110.02	110.83	AT1G71950	GO:0004866,endopeptidase inhibitor activity; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0010951,negative regulation of endopeptidase activity; GO:0099503,secretory vesicle; 	--	NP_565029.1 Proteinase inhibitor, propeptide [Arabidopsis thaliana]
AT1G72170	-0.870639901079905	0.410290047674661	0.0338368334171409	0.215696772116975	Down	78.10	82.50	46.96	42.12	AT1G72170	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0008150,biological_process; GO:0016020,membrane; GO:0061617,MICOS complex; 	--	NP_565036.1 MICOS complex subunit, putative (DUF543) [Arabidopsis thaliana]
AT1G72230	-0.659615329508957	0.27993133917353	0.0184556760658795	0.14114837336451	Down	97.84	108.94	76.02	56.41	AT1G72230	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0022900,electron transport chain; 	--	NP_177368.1 Cupredoxin superfamily protein [Arabidopsis thaliana]
AT1G72250	0.660251747753058	0.129999239634561	3.79647821769116e-07	1.59105784765064e-05	Up	84.64	92.75	127.64	157.44	AT1G72250	GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; 	--	NP_001320541.1 Di-glucose binding protein with Kinesin motor domain-containing protein [Arabidopsis thaliana]
AT1G72280	-1.12427361270439	0.365198398012723	0.00208025752793646	0.0261454859514202	Down	31.40	23.92	10.29	15.69	AT1G72280	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0015035,protein-disulfide reductase activity; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016972,thiol oxidase activity; GO:0034975,protein folding in endoplasmic reticulum; GO:0071949,FAD binding; 	ERO1L; ERO1-like protein alpha [EC:1.8.4.-]; K10950; 	NP_177372.1 endoplasmic reticulum oxidoreductins 1 [Arabidopsis thaliana]
AT1G72320	0.642352109535015	0.271326022307468	0.0179109048975936	0.13877874781677	Up	15.43	14.80	24.17	23.78	AT1G72320	GO:0000056,ribosomal small subunit export from nucleus; GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000472,endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000480,endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006417,regulation of translation; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0010252,auxin homeostasis; GO:0030686,90S preribosome; GO:0030688,preribosome, small subunit precursor; 	--	NP_001321803.1 pumilio 23 [Arabidopsis thaliana]
AT1G72330	1.12533074925987	0.34952905177801	0.00128386214889848	0.0178146643815276	Up	9.02	13.48	22.74	27.15	AT1G72330	GO:0001666,response to hypoxia; GO:0003824,catalytic activity; GO:0004021,L-alanine:2-oxoglutarate aminotransferase activity; GO:0005739,mitochondrion; GO:0008483,transaminase activity; GO:0009058,biosynthetic process; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding; GO:0042853,L-alanine catabolic process; 	GPT, ALT; alanine transaminase [EC:2.6.1.2]; K00814; 	NP_565040.2 alanine aminotransferase 2 [Arabidopsis thaliana]
AT1G72440	0.783066905734468	0.19789409767021	7.58969929891469e-05	0.00174029981151639	Up	21.62	26.80	44.93	39.61	AT1G72440	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0010197,polar nucleus fusion; GO:0051302,regulation of cell division; 	--	NP_177388.2 CCAAT-binding factor [Arabidopsis thaliana]
AT1G72660	-0.861271194902894	0.422438216962717	0.0414690095457015	0.245432920725534	Down	24.41	26.18	8.72	19.88	AT1G72660	GO:0000166,nucleotide binding; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0016787,hydrolase activity; GO:0019003,GDP binding; 	K06944; uncharacterized protein; K06944; 	NP_001031270.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT1G72960	-1.63362994490198	0.707470545443298	0.0209372714674827	1	Down	3.72	5.16	1.13	1.81	AT1G72960	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane; GO:0016320,endoplasmic reticulum membrane fusion; GO:0016787,hydrolase activity; 	--	NP_177439.2 Root hair defective 3 GTP-binding protein (RHD3) [Arabidopsis thaliana]
AT1G73010	-0.931835989267784	0.425305067759723	0.0284530539896962	0.192874390569498	Down	34.04	22.91	15.20	15.14	AT1G73010	GO:0004427,inorganic diphosphate phosphatase activity; GO:0016036,cellular response to phosphate starvation; GO:0016462,pyrophosphatase activity; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0046872,metal ion binding; GO:0051262,protein tetramerization; GO:0071456,cellular response to hypoxia; 	PHOSPHO2; pyridoxal phosphate phosphatase PHOSPHO2 [EC:3.1.3.74]; K13248; 	VYS50862.1 unnamed protein product [Arabidopsis thaliana]
AT1G73060	-1.00255807963278	0.349887882555481	0.00416522864880437	0.0454438534638682	Down	40.68	38.49	14.73	25.78	AT1G73060	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; 	--	NP_565054.1 Low PSII Accumulation 3 [Arabidopsis thaliana]
AT1G73220	-0.629511710893147	0.220873052632398	0.00437045998478807	0.0469805512229601	Down	56.40	63.42	44.16	34.28	AT1G73220	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0010150,leaf senescence; GO:0015226,carnitine transmembrane transporter activity; GO:0015839,cadaverine transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1902603,carnitine transmembrane transport; 	--	NP_565059.2 organic cation/carnitine transporter1 [Arabidopsis thaliana]
AT1G73370	0.814709815489679	0.407723710943841	0.0456959659934255	0.261589322095654	Up	5.30	4.55	7.99	9.66	AT1G73370	GO:0005576,extracellular region; GO:0005985,sucrose metabolic process; GO:0016157,sucrose synthase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080165,callose deposition in phloem sieve plate; 	E2.4.1.13; sucrose synthase [EC:2.4.1.13]; K00695; 	NP_001319374.1 sucrose synthase 6 [Arabidopsis thaliana]
AT1G73540	-2.13451088337047	0.543872807977431	8.68556156426214e-05	0.00192400698579771	Down	38.46	30.62	7.35	8.72	AT1G73540	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52]; K07766; 	NP_177495.2 nudix hydrolase homolog 21 [Arabidopsis thaliana]
AT1G73590	-0.603274207102372	0.281538344673128	0.032130918405178	0.208586979954478	Down	27.08	26.59	17.15	18.80	AT1G73590	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009630,gravitropism; GO:0009640,photomorphogenesis; GO:0009734,auxin-activated signaling pathway; GO:0009793,embryo development ending in seed dormancy; GO:0009908,flower development; GO:0009925,basal plasma membrane; GO:0009926,auxin polar transport; GO:0010051,xylem and phloem pattern formation; GO:0010229,inflorescence development; GO:0010252,auxin homeostasis; GO:0010315,auxin export across the plasma membrane; GO:0010329,auxin efflux transmembrane transporter activity; GO:0010338,leaf formation; GO:0010358,leaf shaping; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0045177,apical part of cell; GO:0048364,root development; GO:0048367,shoot system development; GO:0048825,cotyledon development; GO:0048826,cotyledon morphogenesis; GO:0055085,transmembrane transport; GO:0060918,auxin transport; 	--	NP_177500.1 Auxin efflux carrier family protein [Arabidopsis thaliana]
AT1G73610	-1.99891758887998	0.707725171989394	0.00473653399907143	1	Down	12.45	10.20	3.59	2.10	AT1G73610	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_177502.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]
AT1G73655	-0.864622996832575	0.261767715992144	0.000956508745448147	0.0141424207238191	Down	89.73	111.77	51.22	61.53	AT1G73655	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity; GO:0019048,modulation by virus of host process; 	--	NP_565069.4 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT1G73680	-0.905001763031154	0.288390305645564	0.00170038514088047	0.0222268468626156	Down	29.78	32.73	20.32	13.40	AT1G73680	GO:0001676,long-chain fatty acid metabolic process; GO:0004601,peroxidase activity; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0006979,response to oxidative stress; GO:0010150,leaf senescence; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0020037,heme binding; GO:0031408,oxylipin biosynthetic process; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0098869,cellular oxidant detoxification; 	DOX; alpha-dioxygenase [EC:1.14.99.-]; K10529; 	NP_177509.1 alpha dioxygenase [Arabidopsis thaliana]
AT1G73720	1.17909329767914	0.215271692444607	4.32027278363148e-08	2.18746872983463e-06	Up	28.68	31.18	69.86	67.78	AT1G73720	GO:0000398,mRNA splicing, via spliceosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0071011,precatalytic spliceosome; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_177513.2 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT1G73880	-1.04410414462266	0.364292622082464	0.0041554471802857	0.0453770442530318	Down	24.38	22.64	11.87	11.29	AT1G73880	GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0033836,flavonol 7-O-beta-glucosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0047893,flavonol 3-O-glucosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; GO:0102360,daphnetin 3-O-glucosyltransferase activity; GO:0102425,myricetin 3-O-glucosyltransferase activity; 	--	NP_177529.2 UDP-glucosyl transferase 89B1 [Arabidopsis thaliana]
AT1G73940	0.807569801853769	0.355062429843178	0.0229392725747699	0.164963290602911	Up	35.97	54.78	85.84	75.16	AT1G73940	GO:0003729,mRNA binding; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_565076.1 tumor necrosis factor receptor family protein [Arabidopsis thaliana]
AT1G73970	-0.941988318680131	0.379861847898813	0.0131449390041914	0.110177681315537	Down	25.91	11.80	8.53	11.48	AT1G73970	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_177537.2 obscurin-like protein [Arabidopsis thaliana]
AT1G74010	-1.38255622094777	0.427867932336005	0.00123242061394282	0.0172531445780455	Down	40.96	26.07	16.56	9.31	AT1G74010	GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0009058,biosynthetic process; GO:0009505,plant-type cell wall; GO:0016844,strictosidine synthase activity; 	STR1; strictosidine synthase [EC:4.3.3.2]; K01757; 	NP_177541.1 Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]
AT1G74030	-1.0077496115472	0.343102924320995	0.00331228719780763	0.0376617073224598	Down	34.64	29.63	20.71	11.50	AT1G74030	GO:0000015,phosphopyruvate hydratase complex; GO:0000287,magnesium ion binding; GO:0004634,phosphopyruvate hydratase activity; GO:0006096,glycolytic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010090,trichome morphogenesis; GO:0016829,lyase activity; GO:0046872,metal ion binding; 	ENO, eno; enolase [EC:4.2.1.11]; K01689; 	NP_177543.1 enolase 1 [Arabidopsis thaliana]
AT1G74045	3.14608348246455	1.2822220638151	0.0141427023672234	1	Up	0.94	0.34	5.87	5.81	AT1G74045	GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane; 	--	NP_683494.2 tetraspanin-17 protein [Arabidopsis thaliana]
AT1G74110	-1.65658893227342	0.787300518230568	0.0353664115408302	1	Down	8.56	3.35	1.46	2.42	AT1G74110	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008150,biological_process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_177551.1 cytochrome P450, family 78, subfamily A, polypeptide 10 [Arabidopsis thaliana]
AT1G74270	0.834974227218924	0.333405386596132	0.0122665745464674	0.104510204154483	Up	73.26	55.45	124.43	108.77	AT1G74270	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0042273,ribosomal large subunit biogenesis; GO:1990904,ribonucleoprotein complex; 	RP-L35Ae, RPL35A; large subunit ribosomal protein L35Ae; K02917; 	NP_177567.1 Ribosomal protein L35Ae family protein [Arabidopsis thaliana]
AT1G74540	-0.97659668699631	0.19031305191819	2.87400003878172e-07	1.23791564170442e-05	Down	112.44	91.35	51.05	54.30	AT1G74540	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072532,tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity; GO:0072550,triferuloylspermidine meta-hydroxylase activity; GO:0072551,diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0072552,monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity; GO:0080088,spermidine hydroxycinnamate conjugate biosynthetic process; 	CYP98A8; cytochrome P450 family 98 subfamily A polypeptide 8 [EC:1.14.13.-]; K15506; 	NP_177594.1 cytochrome P450, family 98, subfamily A, polypeptide 8 [Arabidopsis thaliana]
AT1G74550	-1.47557508296236	0.232023114627554	2.02274794923409e-10	1.69541812907087e-08	Down	73.30	65.43	26.05	24.59	AT1G74550	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008216,spermidine metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; GO:0072547,tricoumaroylspermidine meta-hydroxylase activity; GO:0072548,dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity; GO:0072549,monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity; 	CYP98A9; cytochrome P450 family 98 subfamily A polypeptide 9 [EC:1.14.13.-]; K23662; 	NP_177595.1 cytochrome P450, family 98, subfamily A, polypeptide 9 [Arabidopsis thaliana]
AT1G74560	0.600141042826442	0.237886055499056	0.0116421670363538	0.100362114027776	Up	96.51	61.64	118.91	124.93	AT1G74560	GO:0000724,double-strand break repair via homologous recombination; GO:0000785,chromatin; GO:0003682,chromatin binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006334,nucleosome assembly; GO:0016444,somatic cell DNA recombination; GO:0042393,histone binding; 	--	NP_177596.1 NAP1-related protein 1 [Arabidopsis thaliana]
AT1G74950	0.865059250249064	0.29320833944357	0.0031744207426944	0.0363607472882032	Up	35.42	34.83	66.68	63.29	AT1G74950	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006952,defense response; GO:0009611,response to wounding; GO:0009753,response to jasmonic acid; GO:0031347,regulation of defense response; GO:0042802,identical protein binding; GO:2000022,regulation of jasmonic acid mediated signaling pathway; 	JAZ; jasmonate ZIM domain-containing protein; K13464; 	NP_001322261.1 TIFY domain/Divergent CCT motif family protein [Arabidopsis thaliana]
AT1G74970	-1.32464733402062	0.342109230438604	0.000107945442391549	0.00230079589839718	Down	62.78	89.53	27.45	34.59	AT1G74970	GO:0000312,plastid small ribosomal subunit; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9; K02996; 	NP_177635.1 ribosomal protein S9 [Arabidopsis thaliana]
AT1G75030	-1.37682348509498	0.289726789817825	2.01270738387357e-06	7.32188712520578e-05	Down	81.26	79.58	31.88	31.03	AT1G75030	GO:0006952,defense response; 	--	NP_177640.1 thaumatin-like protein 3 [Arabidopsis thaliana]
AT1G75200	1.12726089094518	0.286156933193627	8.17162605643859e-05	0.00184612989307559	Up	12.53	19.21	37.49	32.80	AT1G75200	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0008033,tRNA processing; GO:0010181,FMN binding; GO:0016651,oxidoreductase activity, acting on NAD(P)H; GO:0016829,lyase activity; GO:0031591,wybutosine biosynthetic process; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0102521,tRNA-4-demethylwyosine synthase activity; 	--	NP_177656.2 flavodoxin family protein / radical SAM domain-containing protein [Arabidopsis thaliana]
AT1G75280	-0.891240186182186	0.14504220611552	8.01170758007229e-10	5.95121152879022e-08	Down	276.48	294.21	163.48	148.79	AT1G75280	GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006979,response to oxidative stress; GO:0016491,oxidoreductase activity; 	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050; 	NP_565107.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]
AT1G75300	-1.05291845861806	0.233650432448943	6.59418559773729e-06	0.000211371763152277	Down	111.22	115.60	44.58	67.15	AT1G75300	GO:0005739,mitochondrion; GO:0016491,oxidoreductase activity; 	PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-]; K23050; 	NP_177665.1 NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]
AT1G75350	-0.949881241246196	0.224632524950269	2.35149313719806e-05	0.000649671990355054	Down	206.82	255.73	122.57	120.67	AT1G75350	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L31, rpmE; large subunit ribosomal protein L31; K02909; 	NP_565109.1 Ribosomal protein L31 [Arabidopsis thaliana]
AT1G75770	1.53415966468444	0.448104604442635	0.000617829278756107	0.0100185257555157	Up	12.17	11.52	34.09	35.68	AT1G75770	--	--	NP_565117.1 hypothetical protein AT1G75770 [Arabidopsis thaliana]
AT1G75780	-0.713791706912161	0.246217825221695	0.00374324677028474	0.0417205536256804	Down	55.78	51.73	36.41	30.02	AT1G75780	GO:0000166,nucleotide binding; GO:0000226,microtubule cytoskeleton organization; GO:0000278,mitotic cell cycle; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005200,structural constituent of cytoskeleton; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007010,cytoskeleton organization; GO:0007017,microtubule-based process; GO:0009416,response to light stimulus; GO:0009826,unidimensional cell growth; GO:0046872,metal ion binding; 	TUBB; tubulin beta; K07375; 	NP_177706.1 tubulin beta-1 chain [Arabidopsis thaliana]
AT1G75790	-0.696595150022971	0.336399227831612	0.0383831519902863	0.233632483041954	Down	20.60	25.31	12.98	15.89	AT1G75790	GO:0005507,copper ion binding; GO:0005886,plasma membrane; GO:0016491,oxidoreductase activity; 	--	NP_177707.1 SKU5 similar 18 [Arabidopsis thaliana]
AT1G75880	-0.614187207982171	0.174294232727562	0.000425320571494602	0.00731775546378715	Down	131.48	139.71	95.13	84.61	AT1G75880	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_974149.1 SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]
AT1G75910	-1.00094210768535	0.137946578712411	3.98668082861621e-13	5.61986087261183e-11	Down	316.70	356.57	179.19	162.26	AT1G75910	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0070505,pollen coat; 	--	NP_177719.1 extracellular lipase 4 [Arabidopsis thaliana]
AT1G75930	-1.15909894435793	0.143486973942991	6.57956062035406e-16	1.55749620694123e-13	Down	270.16	280.21	123.60	126.95	AT1G75930	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016298,lipase activity; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0070505,pollen coat; 	--	NP_177721.1 extracellular lipase 6 [Arabidopsis thaliana]
AT1G75940	-0.774873411965296	0.0998740929896467	8.59379701276921e-15	1.66571956161566e-12	Down	558.04	547.36	313.73	343.17	AT1G75940	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009651,response to salt stress; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019762,glucosinolate catabolic process; GO:0102483,scopolin beta-glucosidase activity; 	E3.2.1.21; beta-glucosidase [EC:3.2.1.21]; K01188; 	AAF26759.2 T4O12.15 [Arabidopsis thaliana]
AT1G75945	4.16916762944813	0.321758654342562	2.13253203818122e-38	4.40900998893968e-35	Up	23.93	37.38	567.86	545.76	AT1G75945	--	--	NP_001322302.1 hypothetical protein AT1G75945 [Arabidopsis thaliana]
AT1G75960	-1.83539776544317	0.609596444121164	0.00260525519153426	0.0311050920606184	Down	6.88	13.39	3.10	2.65	AT1G75960	GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity; 	--	NP_177724.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]
AT1G76100	-0.756292569140433	0.310172211806125	0.0147565659139388	0.119821710126376	Down	67.96	68.92	40.02	42.41	AT1G76100	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0031977,thylakoid lumen; GO:0046872,metal ion binding; 	petE; plastocyanin; K02638; 	NP_001321069.1 plastocyanin 1 [Arabidopsis thaliana]
AT1G76180	-0.650423558009006	0.0979366918972942	3.1100157035658e-11	3.06188450815347e-09	Down	1665.22	1775.31	1155.06	1071.31	AT1G76180	GO:0001786,phosphatidylserine binding; GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0008289,lipid binding; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009507,chloroplast; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031210,phosphatidylcholine binding; GO:0044183,protein folding chaperone; GO:0046872,metal ion binding; GO:0050821,protein stabilization; GO:0051179,localization; GO:0090559,regulation of membrane permeability; 	--	NP_001185408.1 Dehydrin family protein [Arabidopsis thaliana]
AT1G76200	0.632218871739344	0.257502158128307	0.0140806874685751	0.115983351957287	Up	195.24	237.89	388.87	291.27	AT1G76200	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0016020,membrane; GO:0070469,respirasome; 	--	NP_565128.1 NADH dehydrogenase ubiquinone 1 beta subcomplex subunit [Arabidopsis thaliana]
AT1G76590	1.43177279796863	0.3842677785694	0.000194560360133355	0.00376524378698014	Up	17.78	16.40	39.32	54.67	AT1G76590	--	--	NP_565135.1 PLATZ transcription factor family protein [Arabidopsis thaliana]
AT1G76810	-1.54590662251244	0.289050740127836	8.88240122203856e-08	4.18958886537598e-06	Down	16.22	22.34	5.99	7.48	AT1G76810	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006412,translation; GO:0006413,translational initiation; 	EIF5B; translation initiation factor 5B; K03243; 	NP_177807.3 eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]
AT1G77020	0.763729706640285	0.251458068008375	0.0023878298570278	0.0292408977062486	Up	36.17	38.17	56.24	72.30	AT1G77020	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_177828.2 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]
AT1G77030	1.0991740264466	0.249304526905581	1.0386755235374e-05	0.000311979899987443	Up	13.85	13.39	31.38	27.86	AT1G77030	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_177829.5 putative DEAD-box ATP-dependent RNA helicase 29 [Arabidopsis thaliana]
AT1G77280	-1.5856369853315	0.6578617969655	0.0159398929508074	0.126997027652386	Down	5.28	5.35	1.34	2.30	AT1G77280	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity; 	--	NP_001319394.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Arabidopsis thaliana]
AT1G77470	0.78407868635542	0.379954115461673	0.0390543155638961	0.236672586502262	Up	14.35	15.54	29.49	22.67	AT1G77470	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0003689,DNA clamp loader activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005663,DNA replication factor C complex; GO:0006260,DNA replication; GO:0006261,DNA-templated DNA replication; GO:0006281,DNA repair; GO:0006952,defense response; GO:0016887,ATP hydrolysis activity; GO:0031348,negative regulation of defense response; 	RFC3_5; replication factor C subunit 3/5; K10756; 	NP_177871.1 replication factor C subunit 3 [Arabidopsis thaliana]
AT1G77550	0.668767031663102	0.248171908714583	0.00704365372708461	0.0682096209871074	Up	15.60	19.65	27.07	29.90	AT1G77550	GO:0005737,cytoplasm; GO:0016874,ligase activity; GO:0036211,protein modification process; 	--	NP_177879.3 tubulin-tyrosine ligase [Arabidopsis thaliana]
AT1G77710	0.630878444604885	0.253611553639155	0.0128616355834286	0.108536455382607	Up	142.90	149.76	248.90	210.75	AT1G77710	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0071569,protein ufmylation; GO:1990592,protein K69-linked ufmylation; 	--	NP_177894.1 ubiquitin-fold modifier [Arabidopsis thaliana]
AT1G77940	0.740678408592218	0.125579439847583	3.6774101665692e-09	2.42650388916441e-07	Up	654.49	644.90	1057.14	1150.44	AT1G77940	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L30e, RPL30; large subunit ribosomal protein L30e; K02908; 	NP_565164.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]
AT1G78010	0.988971841017983	0.367355465414248	0.00709954268295364	0.0684835357558631	Up	9.05	10.56	17.44	22.17	AT1G78010	GO:0000166,nucleotide binding; GO:0002098,tRNA wobble uridine modification; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006400,tRNA modification; GO:0008033,tRNA processing; GO:0016740,transferase activity; GO:0030488,tRNA methylation; 	--	NP_177924.3 tRNA modification GTPase [Arabidopsis thaliana]
AT1G78630	-0.630922387895171	0.161548105882559	9.40397607191128e-05	0.00204881325774451	Down	248.49	274.18	179.41	163.13	AT1G78630	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0017148,negative regulation of translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L13, MRPL13, rplM; large subunit ribosomal protein L13; K02871; 	NP_177984.1 Ribosomal protein L13 family protein [Arabidopsis thaliana]
AT1G78950	-1.78475025114503	0.397475734479692	7.11523721524336e-06	0.000223454475076187	Down	17.47	17.52	3.51	6.96	AT1G78950	GO:0005811,lipid droplet; GO:0016104,triterpenoid biosynthetic process; GO:0016853,isomerase activity; GO:0016866,intramolecular transferase activity; GO:0031559,oxidosqualene cyclase activity; GO:0042300,beta-amyrin synthase activity; 	LUP4; beta-amyrin synthase [EC:5.4.99.39]; K15813; 	NP_001323419.1 Terpenoid cyclases family protein [Arabidopsis thaliana]
AT1G79040	-0.840961351245434	0.0994866637404101	2.83897430828994e-17	8.19011076612482e-15	Down	2923.36	2677.94	1505.35	1673.72	AT1G79040	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010270,photosystem II oxygen evolving complex assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042651,thylakoid membrane; 	psbR; photosystem II 10kDa protein; K03541; 	NP_178025.1 photosystem II subunit R [Arabidopsis thaliana]
AT1G79150	0.921291534331707	0.264999723442538	0.000507861298646453	0.00851353974285033	Up	12.88	13.12	23.96	26.10	AT1G79150	GO:0003682,chromatin binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006260,DNA replication; GO:0006270,DNA replication initiation; GO:0042254,ribosome biogenesis; 	--	NP_178036.2 binding protein [Arabidopsis thaliana]
AT1G79160	0.857818370822819	0.433325771904729	0.0477467613320837	0.268738010129083	Up	17.57	16.45	26.71	36.15	AT1G79160	GO:0003674,molecular_function; GO:0005575,cellular_component; 	--	NP_178037.2 filamentous hemagglutinin transporter [Arabidopsis thaliana]
AT1G79470	0.747680512546282	0.353961817253675	0.0346590389788332	0.219136278558831	Up	12.40	12.43	20.31	22.09	AT1G79470	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0003938,IMP dehydrogenase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0006164,purine nucleotide biosynthetic process; GO:0006177,GMP biosynthetic process; GO:0006183,GTP biosynthetic process; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; 	IMPDH, guaB; IMP dehydrogenase [EC:1.1.1.205]; K00088; 	NP_178065.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]
AT1G79550	-0.734708237719303	0.122926000746459	2.27516537216137e-09	1.55292651791484e-07	Down	383.29	429.39	263.02	232.73	AT1G79550	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002237,response to molecule of bacterial origin; GO:0004618,phosphoglycerate kinase activity; GO:0004672,protein kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009408,response to heat; GO:0009416,response to light stimulus; GO:0009506,plasmodesma; GO:0009570,chloroplast stroma; GO:0009749,response to glucose; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0043531,ADP binding; GO:0048046,apoplast; 	PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3]; K00927; 	NP_178073.1 phosphoglycerate kinase [Arabidopsis thaliana]
AT1G79910	-1.52686330667562	0.753100737811929	0.0426178760795017	0.24974372067317	Down	17.85	4.46	2.34	5.63	AT1G79910	GO:0003674,molecular_function; GO:0008104,protein localization; GO:0015031,protein transport; 	--	NP_001031304.1 Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana]
AT1G80320	-2.3166018506864	1.0981078162869	0.0348901865373973	1	Down	8.52	3.74	0.35	2.25	AT1G80320	GO:0051213,dioxygenase activity; 	--	NP_178148.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]
AT1G80380	-0.824324569229469	0.264564546906908	0.00183459920404752	0.0236080945292629	Down	38.75	41.25	23.98	21.86	AT1G80380	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0008887,glycerate kinase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009853,photorespiration; GO:0009854,oxidative photosynthetic carbon pathway; GO:0009941,chloroplast envelope; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016787,hydrolase activity; 	GLYK; D-glycerate 3-kinase [EC:2.7.1.31]; K15918; 	NP_001185447.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT1G80460	-0.714954338066156	0.201698276329643	0.000393101151519566	0.00682016753090939	Down	74.81	86.33	55.49	43.96	AT1G80460	GO:0000166,nucleotide binding; GO:0002237,response to molecule of bacterial origin; GO:0004370,glycerol kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006071,glycerol metabolic process; GO:0006072,glycerol-3-phosphate metabolic process; GO:0006641,triglyceride metabolic process; GO:0006952,defense response; GO:0009617,response to bacterium; GO:0010188,response to microbial phytotoxin; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019563,glycerol catabolic process; GO:0042742,defense response to bacterium; GO:0046167,glycerol-3-phosphate biosynthetic process; 	glpK, GK; glycerol kinase [EC:2.7.1.30]; K00864; 	NP_178161.1 Actin-like ATPase superfamily protein [Arabidopsis thaliana]
AT1G80620	0.779890161829913	0.391639448178081	0.046442717560052	0.264883637394228	Up	12.98	13.65	18.43	28.22	AT1G80620	GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0043229,intracellular organelle; GO:1990904,ribonucleoprotein complex; 	--	NP_849914.1 S15/NS1, RNA-binding protein [Arabidopsis thaliana]
AT1G80680	0.603343497487586	0.230247769599786	0.00878241759122055	0.080640925402732	Up	16.11	15.58	25.14	23.76	AT1G80680	GO:0002758,innate immune response-activating signal transduction; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0006913,nucleocytoplasmic transport; GO:0006952,defense response; GO:0009733,response to auxin; GO:0015031,protein transport; GO:0015288,porin activity; GO:0016020,membrane; GO:0017056,structural constituent of nuclear pore; GO:0031965,nuclear membrane; GO:0048574,long-day photoperiodism, flowering; GO:0051028,mRNA transport; GO:0055085,transmembrane transport; 	NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96; K14297; 	NP_178183.2 SUPPRESSOR OF AUXIN RESISTANCE 3 [Arabidopsis thaliana]
AT1G80750	0.877674509721763	0.306574739931866	0.00419862172047834	0.0456876337215208	Up	34.01	34.96	73.02	55.39	AT1G80750	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L7e, RPL7; large subunit ribosomal protein L7e; K02937; 	NP_178190.1 Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]
AT1G80960	2.409723386574	0.524962634042055	4.42660257109944e-06	0.000148734736953239	Up	1.71	4.96	16.81	19.01	AT1G80960	GO:0005515,protein binding; GO:0008150,biological_process; 	--	NP_001319434.1 F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]
AT2G01250	0.875804717993437	0.130937305025172	2.25110485016663e-11	2.27032159888757e-09	Up	284.75	324.97	539.27	598.05	AT2G01250	GO:0000325,plant-type vacuole; GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005840,ribosome; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L7e, RPL7; large subunit ribosomal protein L7e; K02937; 	NP_178234.1 Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]
AT2G01410	0.695405705152746	0.249324170943412	0.00528444922263658	0.054042533064144	Up	43.88	33.63	67.84	59.63	AT2G01410	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0016020,membrane; 	--	NP_178250.1 NHL domain-containing protein [Arabidopsis thaliana]
AT2G01640	1.21222797755441	0.516204536911671	0.0188568855674859	0.143333128348445	Up	13.93	16.40	33.67	37.76	AT2G01640	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030686,90S preribosome; GO:0030688,preribosome, small subunit precursor; 	--	NP_001189496.1 ribosome biogenesis protein [Arabidopsis thaliana]
AT2G01990	-2.21495639954	0.661570973574642	0.000813895621448117	0.0124955138416632	Down	27.09	14.71	5.51	3.54	AT2G01990	GO:0007140,male meiotic nuclear division; GO:0007143,female meiotic nuclear division; 	--	NP_001324929.1 XRI1-like protein [Arabidopsis thaliana]
AT2G02050	-0.839783443266733	0.267327069106248	0.0016813751715288	0.0220846812266379	Down	208.76	231.92	146.01	102.89	AT2G02050	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0005758,mitochondrial intermembrane space; GO:0009853,photorespiration; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0070469,respirasome; 	NDUFB7; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7; K03963; 	NP_565280.1 NADH-ubiquinone oxidoreductase B18 subunit [Arabidopsis thaliana]
AT2G02400	-0.921130638776176	0.457055590369996	0.0438671521875499	0.254762182999324	Down	17.63	33.90	14.46	13.15	AT2G02400	GO:0005886,plasma membrane; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; 	--	NP_178345.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT2G02500	-1.58808654460011	0.603619416529256	0.00851490354157787	0.0787676200098982	Down	17.01	13.88	5.20	5.25	AT2G02500	GO:0003824,catalytic activity; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0050518,2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; GO:0070567,cytidylyltransferase activity; 	ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]; K00991; 	NP_001325418.1 Nucleotide-diphospho-sugar transferases superfamily protein [Arabidopsis thaliana]
AT2G02690	2.20313106636742	0.683435324100437	0.00126584298355502	1	Up	1.99	0.96	8.07	5.76	AT2G02690	GO:0046872,metal ion binding; 	--	NP_001324084.1 Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]
AT2G02710	1.38068806905889	0.521375263289844	0.00809298562272929	0.0758609804064849	Up	5.69	4.79	13.38	14.39	AT2G02710	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0009637,response to blue light; GO:0009881,photoreceptor activity; GO:0050896,response to stimulus; 	--	NP_565288.1 PAS/LOV protein B [Arabidopsis thaliana]
AT2G02810	-1.37948470670595	0.644302024179111	0.0322697736553238	0.209187951889742	Down	12.20	12.37	6.42	3.04	AT2G02810	GO:0000139,Golgi membrane; GO:0005459,UDP-galactose transmembrane transporter activity; GO:0005460,UDP-glucose transmembrane transporter activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008643,carbohydrate transport; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0015297,antiporter activity; GO:0015780,nucleotide-sugar transmembrane transport; GO:0015786,UDP-glucose transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0055085,transmembrane transport; GO:0072334,UDP-galactose transmembrane transport; 	--	NP_565290.1 UDP-galactose transporter 1 [Arabidopsis thaliana]
AT2G02850	0.829684820730658	0.204773196650812	5.08412522815876e-05	0.00125136058443074	Up	174.82	145.92	292.45	286.98	AT2G02850	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0009856,pollination; GO:0022900,electron transport chain; GO:0031012,extracellular matrix; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0048653,anther development; GO:0099503,secretory vesicle; 	--	NP_178388.1 plantacyanin [Arabidopsis thaliana]
AT2G02955	1.42586620408011	0.695562818459974	0.0403697025171346	1	Up	1.76	1.80	5.57	4.12	AT2G02955	GO:0001164,RNA polymerase I core promoter sequence-specific DNA binding; GO:0001188,RNA polymerase I preinitiation complex assembly; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005668,RNA polymerase transcription factor SL1 complex; GO:0005730,nucleolus; GO:0006360,transcription by RNA polymerase I; GO:0009793,embryo development ending in seed dormancy; GO:0042790,nucleolar large rRNA transcription by RNA polymerase I; GO:0046872,metal ion binding; GO:0070860,RNA polymerase I core factor complex; 	--	NP_671769.1 maternal effect embryo arrest 12 [Arabidopsis thaliana]
AT2G03060	1.96256895261833	0.735528384729438	0.00762489372935272	1	Up	2.81	1.44	10.26	6.59	AT2G03060	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0000987,cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009555,pollen development; GO:0010152,pollen maturation; GO:0016020,membrane; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046983,protein dimerization activity; GO:0080092,regulation of pollen tube growth; 	--	NP_001318186.1 AGAMOUS-like 30 [Arabidopsis thaliana]
AT2G03200	-0.86979994555023	0.255255864871473	0.000655462414063345	0.0104916274147817	Down	49.70	53.32	25.56	31.93	AT2G03200	GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; 	--	NP_565298.2 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT2G03470	0.715612193353883	0.294063612640251	0.0149524566806534	0.121025032491283	Up	24.42	19.60	39.41	33.99	AT2G03470	GO:0000118,histone deacetylase complex; GO:0003674,molecular_function; GO:0005634,nucleus; 	--	NP_178446.1 ELM2 domain-containing protein [Arabidopsis thaliana]
AT2G03480	0.972004099365917	0.157785272866758	7.26087647273172e-10	5.45885894813557e-08	Up	106.43	133.68	205.70	273.21	AT2G03480	GO:0000138,Golgi trans cisterna; GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; 	QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-]; K23870; 	NP_027543.2 QUASIMODO2 LIKE 2 [Arabidopsis thaliana]
AT2G03667	1.04955944848497	0.41410821251311	0.0112606232084736	0.098095527318199	Up	6.28	6.23	13.31	13.00	AT2G03667	GO:0004066,asparagine synthase (glutamine-hydrolyzing) activity; GO:0005575,cellular_component; GO:0006529,asparagine biosynthetic process; 	--	NP_001077875.2 Asparagine synthase family protein [Arabidopsis thaliana]
AT2G03690	0.759545754515286	0.306196904473401	0.0131169021552341	0.110017019091061	Up	42.32	36.68	60.45	75.81	AT2G03690	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006744,ubiquinone biosynthetic process; GO:0016020,membrane; GO:0031314,extrinsic component of mitochondrial inner membrane; 	COQ4; ubiquinone biosynthesis protein COQ4; K18586; 	NP_178465.1 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein [Arabidopsis thaliana]
AT2G03720	-4.69324442398697	2.32695400836994	0.0437054618493358	1	Down	4.02	1.11	0.00	0.00	AT2G03720	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016787,hydrolase activity; GO:0048765,root hair cell differentiation; 	--	NP_001323815.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]
AT2G03740	-1.17222981740006	0.26851215928658	1.26745916788043e-05	0.00037346391870681	Down	115.91	153.60	55.65	66.21	AT2G03740	GO:0009507,chloroplast; GO:0009631,cold acclimation; GO:0019898,extrinsic component of membrane; 	--	CAA0356533.1 unnamed protein product [Arabidopsis thaliana]
AT2G03820	0.626651441041806	0.180570964734602	0.000519705620684575	0.00866682399276911	Up	57.55	55.95	93.99	83.91	AT2G03820	GO:0000055,ribosomal large subunit export from nucleus; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006611,protein export from nucleus; GO:0007029,endoplasmic reticulum organization; GO:0009834,plant-type secondary cell wall biogenesis; GO:0015031,protein transport; GO:0043023,ribosomal large subunit binding; 	NMD3; nonsense-mediated mRNA decay protein 3; K07562; 	NP_178476.1 nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis thaliana]
AT2G03850	-0.962937998947748	0.210769063408453	4.90787748018772e-06	0.000162325778350999	Down	183.85	196.71	106.04	91.88	AT2G03850	GO:0009507,chloroplast; 	--	NP_565306.1 Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]
AT2G03913	-3.78046106245325	0.670185276857295	1.69144630331168e-08	9.62495018008323e-07	Down	78.10	156.59	6.08	11.72	AT2G03913	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001030967.1 Cysteine-rich protein [Arabidopsis thaliana]
AT2G04030	1.04093623641785	0.100875617399119	5.78178118478479e-25	3.26013616351161e-22	Up	179.69	181.78	395.35	360.12	AT2G04030	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0006457,protein folding; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009651,response to salt stress; GO:0009704,de-etiolation; GO:0009941,chloroplast envelope; GO:0010157,response to chlorate; GO:0015031,protein transport; GO:0016887,ATP hydrolysis activity; GO:0042803,protein homodimerization activity; GO:0045037,protein import into chloroplast stroma; GO:0048471,perinuclear region of cytoplasm; GO:0051082,unfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone; 	HSP90B, TRA1; heat shock protein 90kDa beta; K09487; 	NP_178487.1 Chaperone protein htpG family protein [Arabidopsis thaliana]
AT2G04050	1.55392619404663	0.753866419413471	0.0392767877885051	1	Up	2.46	1.62	4.95	7.28	AT2G04050	GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane; 	--	NP_178492.1 MATE efflux family protein [Arabidopsis thaliana]
AT2G04280	-0.751817818312154	0.196279404135645	0.000127963761218543	0.00265006754243077	Down	76.45	70.75	40.53	48.54	AT2G04280	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0016020,membrane; 	--	NP_565310.1 calcium ion-binding protein [Arabidopsis thaliana]
AT2G04380	1.91462815893448	0.340666632132546	1.90692607695999e-08	1.06078107554658e-06	Up	39.59	26.23	143.73	108.45	AT2G04380	GO:0008150,biological_process; 	--	NP_178519.1 hypothetical protein AT2G04380 [Arabidopsis thaliana]
AT2G04390	1.32586149592326	0.175806178234759	4.64207019537044e-14	8.11054658782681e-12	Up	161.14	163.81	398.44	429.74	AT2G04390	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S17e, RPS17; small subunit ribosomal protein S17e; K02962; 	NP_178520.1 Ribosomal S17 family protein [Arabidopsis thaliana]
AT2G04690	-1.85406707044709	0.251389512261189	1.64004764881711e-13	2.54309888544703e-11	Down	210.47	204.43	40.42	77.34	AT2G04690	GO:0000325,plant-type vacuole; GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0016020,membrane; GO:0099503,secretory vesicle; 	--	NP_001077878.1 Pyridoxamine 5'-phosphate oxidase family protein [Arabidopsis thaliana]
AT2G04740	-1.33902856652038	0.287276784366551	3.1450923633619e-06	0.000109285352289928	Down	31.87	39.18	14.99	13.49	AT2G04740	GO:0000151,ubiquitin ligase complex; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0016567,protein ubiquitination; GO:0042742,defense response to bacterium; 	--	NP_001323658.1 ankyrin repeat family protein [Arabidopsis thaliana]
AT2G05070	-0.674324362584131	0.143713923588399	2.70375681744532e-06	9.52843844329808e-05	Down	303.58	295.26	191.56	189.73	AT2G05070	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0005739,mitochondrion; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0009941,chloroplast envelope; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0030104,water homeostasis; GO:0046872,metal ion binding; GO:0071215,cellular response to abscisic acid stimulus; GO:0090333,regulation of stomatal closure; GO:1903428,positive regulation of reactive oxygen species biosynthetic process; 	LHCB2; light-harvesting complex II chlorophyll a/b binding protein 2; K08913; 	NP_178582.1 photosystem II light harvesting complex protein 2.2 [Arabidopsis thaliana]
AT2G05100	-1.09070844276588	0.162843992037903	2.11474343739772e-11	2.15027806073104e-09	Down	209.28	187.79	95.54	93.88	AT2G05100	GO:0005739,mitochondrion; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0009941,chloroplast envelope; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0030104,water homeostasis; GO:0046872,metal ion binding; GO:0071215,cellular response to abscisic acid stimulus; GO:0090333,regulation of stomatal closure; GO:1903428,positive regulation of reactive oxygen species biosynthetic process; 	LHCB2; light-harvesting complex II chlorophyll a/b binding protein 2; K08913; 	NP_178585.1 photosystem II light harvesting complex protein 2.1 [Arabidopsis thaliana]
AT2G05540	1.95803659020024	0.786049962099238	0.0127390444150774	1	Up	5.17	5.68	25.64	17.01	AT2G05540	--	--	NP_178622.1 Glycine-rich protein family [Arabidopsis thaliana]
AT2G05760	-1.67683358745162	0.685486593664304	0.0144373061894149	1	Down	8.54	5.93	2.37	2.22	AT2G05760	GO:0009506,plasmodesma; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071702,organic substance transport; 	--	NP_178636.1 Xanthine/uracil permease family protein [Arabidopsis thaliana]
AT2G05990	-0.823950495601941	0.146509184914446	1.86712272230789e-08	1.04803879503301e-06	Down	432.03	347.73	198.21	250.01	AT2G05990	GO:0004318,enoyl-[acyl-carrier-protein] reductase (NADH) activity; GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005835,fatty acid synthase complex; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016631,enoyl-[acyl-carrier-protein] reductase activity; 	fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]; K00208; 	NP_565331.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT2G06925	-0.765456715224567	0.361544601587566	0.034244171545656	0.217510982091072	Down	77.27	89.85	35.18	65.53	AT2G06925	GO:0004623,phospholipase A2 activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005543,phospholipid binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0006629,lipid metabolic process; GO:0006644,phospholipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0031410,cytoplasmic vesicle; GO:0046872,metal ion binding; GO:0047498,calcium-dependent phospholipase A2 activity; GO:0050482,arachidonic acid secretion; 	PLA2G, SPLA2; secretory phospholipase A2 [EC:3.1.1.4]; K01047; 	NP_565337.1 Phospholipase A2 family protein [Arabidopsis thaliana]
AT2G06990	0.725281850784532	0.222374951583153	0.00110813980637538	0.0158918778012562	Up	18.11	18.96	28.12	34.26	AT2G06990	GO:0000166,nucleotide binding; GO:0000460,maturation of 5.8S rRNA; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006397,mRNA processing; GO:0006401,RNA catabolic process; GO:0009908,flower development; GO:0010093,specification of floral organ identity; GO:0016070,RNA metabolic process; GO:0016607,nuclear speck; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0060149,negative regulation of post-transcriptional gene silencing; 	MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]; K12598; 	NP_565338.1 RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana]
AT2G07560	-0.59994163988377	0.165998826354141	0.000301355722699606	0.00544944276980847	Down	59.02	66.32	44.05	39.88	AT2G07560	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008553,P-type proton-exporting transporter activity; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0051453,regulation of intracellular pH; GO:0120029,proton export across plasma membrane; GO:1902600,proton transmembrane transport; 	PMA1, PMA2; H+-transporting ATPase [EC:7.1.2.1]; K01535; 	NP_178762.1 H[+]-ATPase 6 [Arabidopsis thaliana]
AT2G11626	2.75357625683659	0.742002892747164	0.000206438232663505	0.00397033531192369	Up	6.11	0.71	15.74	31.54	AT2G11626	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_671832.1 hypothetical protein AT2G11626 [Arabidopsis thaliana]
AT2G12880	2.08319682361841	0.756547846785626	0.00589516931413902	1	Up	10.41	3.58	23.43	37.36	AT2G12880	GO:0003676,nucleic acid binding; GO:0008150,biological_process; GO:0008270,zinc ion binding; 	--	NP_178944.1 Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
AT2G14290	0.96366436254684	0.175309152822966	3.8643226056262e-08	1.98132384308376e-06	Up	93.76	114.69	229.41	183.00	AT2G14290	GO:0005515,protein binding; 	--	NP_179039.1 LL-diaminopimelate protein (DUF295) [Arabidopsis thaliana]
AT2G15620	-0.61208695723799	0.277235132595597	0.02725639901002	0.186907479115146	Down	30.47	28.81	18.78	20.69	AT2G15620	GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010167,response to nitrate; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042128,nitrate assimilation; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0048307,ferredoxin-nitrite reductase activity; GO:0050421,nitrite reductase (NO-forming) activity; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; 	nirA; ferredoxin-nitrite reductase [EC:1.7.7.1]; K00366; 	NP_179164.1 nitrite reductase 1 [Arabidopsis thaliana]
AT2G16030	2.53519335276305	1.09979657408668	0.0211583124935597	1	Up	1.01	1.48	5.33	9.35	AT2G16030	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; 	--	NP_179201.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT2G16070	1.01042830225577	0.386916156018824	0.00901481950521323	0.0822875908478073	Up	31.34	13.72	39.49	53.04	AT2G16070	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009739,response to gibberellin; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0070273,phosphatidylinositol-4-phosphate binding; 	--	NP_028242.1 plastid division2 [Arabidopsis thaliana]
AT2G16130	-2.14816274502986	0.926676948023193	0.0204419572371645	1	Down	7.02	2.85	0.88	1.41	AT2G16130	GO:0005351,carbohydrate:proton symporter activity; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; 	--	NP_179210.1 polyol/monosaccharide transporter 2 [Arabidopsis thaliana]
AT2G16500	-0.783286049628086	0.247321803566763	0.00153981995085187	0.0206973843215654	Down	32.77	40.54	20.32	23.04	AT2G16500	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006527,arginine catabolic process; GO:0006596,polyamine biosynthetic process; GO:0006979,response to oxidative stress; GO:0008295,spermidine biosynthetic process; GO:0008792,arginine decarboxylase activity; GO:0009409,response to cold; GO:0009446,putrescine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0033388,putrescine biosynthetic process from arginine; GO:0042803,protein homodimerization activity; 	E4.1.1.19; arginine decarboxylase [EC:4.1.1.19]; K01583; 	NP_179243.1 arginine decarboxylase 1 [Arabidopsis thaliana]
AT2G16570	1.19878759131944	0.472411839854893	0.0111618643460333	0.0974404836119232	Up	4.96	5.90	15.28	9.95	AT2G16570	GO:0004044,amidophosphoribosyltransferase activity; GO:0005737,cytoplasm; GO:0006164,purine nucleotide biosynthetic process; GO:0006189,'de novo' IMP biosynthetic process; GO:0006541,glutamine metabolic process; GO:0009113,purine nucleobase biosynthetic process; GO:0009505,plant-type cell wall; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; 	purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14]; K00764; 	NP_179247.1 GLN phosphoribosyl pyrophosphate amidotransferase 1 [Arabidopsis thaliana]
AT2G16580	3.53391769014409	1.78471687132222	0.0476923049232094	1	Up	1.43	0.00	14.45	2.65	AT2G16580	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009733,response to auxin; GO:0009737,response to abscisic acid; GO:0016020,membrane; 	SAUR; SAUR family protein; K14488; 	NP_179248.1 SAUR-like auxin-responsive protein family [Arabidopsis thaliana]
AT2G16660	0.870921367305254	0.149704485549177	5.96972317090586e-09	3.72132743392398e-07	Up	80.33	73.42	146.67	138.98	AT2G16660	GO:0016020,membrane; 	--	NP_179257.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT2G16760	-1.08002090818107	0.50005081390557	0.0307864272039767	0.202847427590241	Down	15.71	21.20	8.92	8.82	AT2G16760	GO:0005783,endoplasmic reticulum; 	--	NP_565392.1 Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]
AT2G16910	-1.04395604299722	0.204602054830366	3.35420461865404e-07	1.42496261282203e-05	Down	66.63	69.33	32.45	34.63	AT2G16910	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009555,pollen development; GO:0043565,sequence-specific DNA binding; GO:0046983,protein dimerization activity; GO:0048658,anther wall tapetum development; 	--	NP_179283.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]
AT2G16990	-1.73234690365303	0.783782203698349	0.0270884991298128	1	Down	5.70	6.09	1.11	2.57	AT2G16990	GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_001323581.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT2G17000	-1.50658868562536	0.694342716513889	0.0300215791294368	1	Down	3.67	4.84	1.98	1.02	AT2G17000	GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006820,anion transport; GO:0008381,mechanosensitive ion channel activity; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; 	--	NP_179292.1 Mechanosensitive ion channel family protein [Arabidopsis thaliana]
AT2G17250	0.880689610691082	0.375267166684107	0.0189337063722289	0.143477475594074	Up	10.54	8.32	16.35	19.01	AT2G17250	GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009793,embryo development ending in seed dormancy; GO:0016020,membrane; GO:0030692,Noc4p-Nop14p complex; GO:0031965,nuclear membrane; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	--	NP_179316.2 CCAAT-binding factor [Arabidopsis thaliana]
AT2G17630	-0.725416159246247	0.277536186559461	0.00895489183785365	0.0819214109502762	Down	43.39	52.15	33.51	24.96	AT2G17630	GO:0003824,catalytic activity; GO:0004648,O-phospho-L-serine:2-oxoglutarate aminotransferase activity; GO:0005737,cytoplasm; GO:0006564,L-serine biosynthetic process; GO:0008483,transaminase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding; 	serC, PSAT1; phosphoserine aminotransferase [EC:2.6.1.52]; K00831; 	NP_179354.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]
AT2G17760	-0.740257867680538	0.284296381193818	0.00921899642805488	0.0838428524120387	Down	34.79	32.40	21.66	19.13	AT2G17760	GO:0003674,molecular_function; GO:0004190,aspartic-type endopeptidase activity; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; 	--	NP_849967.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT2G17880	-0.651705919608754	0.199626673358404	0.00109609685555597	0.0157555984857147	Down	226.53	219.65	147.42	141.01	AT2G17880	GO:0009507,chloroplast; 	--	NP_179378.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]
AT2G18130	-1.92558592932633	0.820937451112457	0.0189967896250486	1	Down	5.65	6.99	2.04	1.31	AT2G18130	GO:0003993,acid phosphatase activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	ACP7; acid phosphatase type 7; K22390; 	NP_179405.1 purple acid phosphatase 11 [Arabidopsis thaliana]
AT2G18160	1.38768044155597	0.571512309258905	0.0151787871438735	0.122347533801008	Up	12.26	11.98	20.27	44.56	AT2G18160	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; 	--	NP_179408.1 basic leucine-zipper 2 [Arabidopsis thaliana]
AT2G18193	3.44237894813333	0.440483819467269	5.49651110843812e-15	1.13640367166958e-12	Up	3.46	2.42	24.04	41.40	AT2G18193	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0006950,response to stress; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_849972.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT2G18220	1.0691301209823	0.279771391084209	0.000132673664094948	0.00272938109966473	Up	12.25	11.44	24.11	26.46	AT2G18220	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0030690,Noc1p-Noc2p complex; GO:0030691,Noc2p-Noc3p complex; GO:0042273,ribosomal large subunit biogenesis; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; 	--	NP_179414.2 Noc2p family [Arabidopsis thaliana]
AT2G18230	-0.585338901551284	0.206410502830505	0.00457110631071018	0.0486317099351284	Down	192.57	150.51	115.56	116.87	AT2G18230	GO:0000287,magnesium ion binding; GO:0004427,inorganic diphosphate phosphatase activity; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006796,phosphate-containing compound metabolic process; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0052386,cell wall thickening; GO:0052546,cell wall pectin metabolic process; 	ppa; inorganic pyrophosphatase [EC:3.6.1.1]; K01507; 	NP_179415.1 pyrophosphorylase 2 [Arabidopsis thaliana]
AT2G18330	0.83813424812359	0.356401842016442	0.0186900904329413	0.14232693174993	Up	11.28	9.84	15.36	23.15	AT2G18330	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0016887,ATP hydrolysis activity; 	--	NP_565435.1 AAA-type ATPase family protein [Arabidopsis thaliana]
AT2G18380	1.03706826828628	0.475177640669642	0.0290737268334973	0.196106809392173	Up	14.95	14.79	35.52	26.29	AT2G18380	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009908,flower development; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; 	--	NP_179429.2 GATA transcription factor 20 [Arabidopsis thaliana]
AT2G18480	-1.54003230816194	0.715770665388173	0.0314310589015396	1	Down	7.36	5.56	1.99	2.56	AT2G18480	GO:0005351,carbohydrate:proton symporter activity; GO:0008643,carbohydrate transport; GO:0010311,lateral root formation; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; 	--	NP_179438.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT2G18500	-4.92725114124814	2.18467336535985	0.0241099886255986	1	Down	1.73	2.72	0.00	0.00	AT2G18500	GO:0005634,nucleus; GO:0045892,negative regulation of DNA-templated transcription; 	--	NP_179440.1 ovate family protein 7 [Arabidopsis thaliana]
AT2G18900	0.725918416267844	0.224674267200219	0.00123365894725726	0.0172531445780455	Up	20.08	22.71	34.93	37.00	AT2G18900	GO:0005515,protein binding; 	NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17); K14552; 	NP_179480.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT2G19070	-0.675301536575976	0.202818482197004	0.000869752650363352	0.0131416341385595	Down	100.90	105.21	54.25	77.42	AT2G19070	GO:0009555,pollen development; GO:0010584,pollen exine formation; GO:0016410,N-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0080072,spermidine:sinapoyl CoA N-acyltransferase activity; GO:0080073,spermidine:coumaroyl CoA N-acyltransferase activity; GO:0080074,spermidine:caffeoyl CoA N-acyltransferase activity; GO:0080075,spermidine:feruloyl CoA N-acyltransferase activity; GO:0080088,spermidine hydroxycinnamate conjugate biosynthetic process; 	E2.3.1.133, HCT; shikimate O-hydroxycinnamoyltransferase [EC:2.3.1.133]; K13065; 	NP_179497.1 spermidine hydroxycinnamoyl transferase [Arabidopsis thaliana]
AT2G19500	-0.808594772820334	0.381856944905673	0.034214617516815	0.217434595438571	Down	19.60	19.15	9.63	12.96	AT2G19500	GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0008131,primary amine oxidase activity; GO:0009690,cytokinin metabolic process; GO:0009823,cytokinin catabolic process; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding; 	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279; 	NP_565455.1 cytokinin oxidase 2 [Arabidopsis thaliana]
AT2G19540	0.732697484171413	0.191367355188399	0.000128796513817148	0.00266286792316953	Up	53.01	50.22	84.00	90.45	AT2G19540	GO:0005515,protein binding; GO:0005730,nucleolus; GO:0009408,response to heat; GO:0016567,protein ubiquitination; GO:0042254,ribosome biogenesis; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:1900035,negative regulation of cellular response to heat; 	--	NP_179544.1 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT2G19670	0.657427407995219	0.284237116632561	0.020725162165315	0.153215516484346	Up	26.39	32.98	46.28	48.86	AT2G19670	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008168,methyltransferase activity; GO:0016274,protein-arginine N-methyltransferase activity; GO:0016740,transferase activity; GO:0018216,peptidyl-arginine methylation; GO:0032259,methylation; 	PRMT1; type I protein arginine methyltransferase [EC:2.1.1.319]; K11434; 	NP_179557.1 protein arginine methyltransferase 1A [Arabidopsis thaliana]
AT2G19730	0.740532980842183	0.10532341270102	2.05001765585233e-12	2.56873424453012e-10	Up	835.74	838.68	1402.13	1441.02	AT2G19730	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009955,adaxial/abaxial pattern specification; GO:0009965,leaf morphogenesis; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L28e, RPL28; large subunit ribosomal protein L28e; K02903; 	NP_001031374.1 Ribosomal L28e protein family [Arabidopsis thaliana]
AT2G19770	-0.709521625040909	0.340628884727915	0.0372534558675472	0.229003528264085	Down	115.70	101.73	48.33	87.83	AT2G19770	GO:0003779,actin binding; GO:0003785,actin monomer binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005856,cytoskeleton; GO:0005938,cell cortex; GO:0009524,phragmoplast; GO:0030036,actin cytoskeleton organization; GO:0042989,sequestering of actin monomers; 	PFN; profilin; K05759; 	NP_179567.1 profilin 5 [Arabidopsis thaliana]
AT2G19800	0.715518181124601	0.345013768117011	0.0380901802189344	0.232305155170049	Up	22.84	24.56	47.40	31.38	AT2G19800	GO:0005506,iron ion binding; GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity; GO:0019310,inositol catabolic process; GO:0019853,L-ascorbic acid biosynthetic process; GO:0046872,metal ion binding; GO:0050113,inositol oxygenase activity; 	MIOX; inositol oxygenase [EC:1.13.99.1]; K00469; 	NP_565459.1 myo-inositol oxygenase 2 [Arabidopsis thaliana]
AT2G19930	-2.29685462992278	1.16020840288162	0.0477382123613945	1	Down	1.35	1.74	0.34	0.29	AT2G19930	GO:0001172,RNA-templated transcription; GO:0003723,RNA binding; GO:0003968,RNA-directed 5'-3' RNA polymerase activity; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0030422,siRNA processing; GO:0031047,gene silencing by RNA; GO:0031380,nuclear RNA-directed RNA polymerase complex; 	--	NP_001325339.1 RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
AT2G20260	-0.78505792430504	0.198185011321392	7.45622824210293e-05	0.00171610561165313	Down	269.06	255.74	158.71	150.55	AT2G20260	GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; 	psaE; photosystem I subunit IV; K02693; 	NP_179616.1 photosystem I subunit E-2 [Arabidopsis thaliana]
AT2G20390	0.892552582993153	0.424008903653659	0.0352884667000401	0.221535136343116	Up	18.81	17.95	35.79	33.52	AT2G20390	GO:0008150,biological_process; 	--	NP_565470.1 cytochrome oxidase complex assembly protein [Arabidopsis thaliana]
AT2G20530	0.7379674272624	0.146561797221716	4.77359256954157e-07	1.95433715594598e-05	Up	158.37	172.57	276.70	284.17	AT2G20530	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0007005,mitochondrion organization; GO:0016020,membrane; 	--	NP_001077924.1 prohibitin 6 [Arabidopsis thaliana]
AT2G20585	1.06881450971089	0.429891425014337	0.012909980978712	0.108870369844271	Up	30.84	31.02	70.89	60.76	AT2G20585	GO:0000741,karyogamy; GO:0005739,mitochondrion; GO:0010197,polar nucleus fusion; 	--	NP_001118352.1 nuclear fusion defective 6 [Arabidopsis thaliana]
AT2G20690	-0.893620938986505	0.270862907086285	0.000969735112972506	0.0143209096147904	Down	80.39	81.10	37.22	51.57	AT2G20690	GO:0004746,riboflavin synthase activity; GO:0009231,riboflavin biosynthetic process; GO:0009507,chloroplast; 	ribE, RIB5; riboflavin synthase [EC:2.5.1.9]; K00793; 	NP_565482.1 lumazine-binding family protein [Arabidopsis thaliana]
AT2G21130	-0.7092058597628	0.230413539137295	0.00208416202769095	0.0261680465116459	Down	166.01	177.07	121.48	90.89	AT2G21130	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity; 	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802; 	NP_179709.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT2G21180	-1.04508595739041	0.471726644555296	0.0267293143616175	0.184439904174635	Down	56.80	45.52	22.16	28.48	AT2G21180	GO:0016020,membrane; 	--	NP_565499.1 transmembrane protein [Arabidopsis thaliana]
AT2G21330	-0.923318116198059	0.126057839140311	2.39685085364363e-13	3.53963509993443e-11	Down	306.79	300.32	163.86	161.39	AT2G21330	GO:0004332,fructose-bisphosphate aldolase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0016829,lyase activity; GO:0022626,cytosolic ribosome; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0031977,thylakoid lumen; GO:0048046,apoplast; 	ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]; K01623; 	NP_565508.1 fructose-bisphosphate aldolase 1 [Arabidopsis thaliana]
AT2G21430	-0.900185664571987	0.367677320894195	0.0143530704194797	0.117757829731247	Down	37.11	29.88	13.98	22.77	AT2G21430	GO:0000323,lytic vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; 	CTSF; cathepsin F [EC:3.4.22.41]; K01373; 	NP_565512.1 Papain family cysteine protease [Arabidopsis thaliana]
AT2G21490	-1.1442993544671	0.367187575221663	0.00183080532449234	0.0235837383700181	Down	64.24	59.07	30.84	25.66	AT2G21490	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009415,response to water; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; GO:0046872,metal ion binding; 	--	NP_179744.1 dehydrin LEA [Arabidopsis thaliana]
AT2G21750	-4.62547957891622	2.3197661935377	0.046158377526136	1	Down	4.96	4.09	0.00	0.00	AT2G21750	GO:0005576,extracellular region; GO:0009567,double fertilization forming a zygote and endosperm; GO:0031410,cytoplasmic vesicle; GO:0031982,vesicle; GO:0080155,regulation of double fertilization forming a zygote and endosperm; GO:0110165,cellular anatomical entity; GO:2000008,regulation of protein localization to cell surface; 	--	NP_179767.1 Egg cell-secreted protein (DUF1278) [Arabidopsis thaliana]
AT2G21970	-0.662542142391463	0.296914757181935	0.0256531842193073	0.178696036722533	Down	79.25	72.30	51.53	45.59	AT2G21970	GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009611,response to wounding; GO:0009765,photosynthesis, light harvesting; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0071486,cellular response to high light intensity; GO:0071492,cellular response to UV-A; 	--	NP_565524.1 stress enhanced protein 2 [Arabidopsis thaliana]
AT2G22410	2.84630845169894	1.36567516350296	0.0371440909310121	1	Up	0.23	0.25	0.99	2.54	AT2G22410	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:1900865,chloroplast RNA modification; 	--	NP_179827.1 SLOW GROWTH 1 [Arabidopsis thaliana]
AT2G22780	-0.637046174278775	0.264238648173151	0.0159143308627816	0.126874854982523	Down	53.02	59.48	34.54	39.10	AT2G22780	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0006097,glyoxylate cycle; GO:0006099,tricarboxylic acid cycle; GO:0006108,malate metabolic process; GO:0009507,chloroplast; GO:0016491,oxidoreductase activity; GO:0016615,malate dehydrogenase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0030060,L-malate dehydrogenase activity; GO:0031998,regulation of fatty acid beta-oxidation; GO:0080093,regulation of photorespiration; 	MDH2; malate dehydrogenase [EC:1.1.1.37]; K00026; 	NP_179863.1 peroxisomal NAD-malate dehydrogenase 1 [Arabidopsis thaliana]
AT2G22800	-2.111109808338	0.817044955409349	0.00977083680342437	1	Down	9.09	12.49	2.45	2.63	AT2G22800	GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0043565,sequence-specific DNA binding; 	--	NP_179865.1 Homeobox-leucine zipper protein family [Arabidopsis thaliana]
AT2G22840	-1.55083808628761	0.762301732162647	0.0419097697133346	1	Down	6.03	4.85	2.12	1.63	AT2G22840	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009409,response to cold; GO:0009624,response to nematode; GO:0009739,response to gibberellin; GO:0019760,glucosinolate metabolic process; GO:0032502,developmental process; GO:0048364,root development; GO:0061062,regulation of nematode larval development; GO:0099402,plant organ development; 	--	NP_179869.1 growth-regulating factor 1 [Arabidopsis thaliana]
AT2G22970	0.932719023981629	0.145369451873225	1.39720730377166e-10	1.22924514916933e-08	Up	139.62	122.51	229.44	279.58	AT2G22970	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0016787,hydrolase activity; GO:0019748,secondary metabolic process; 	--	NP_179880.1 serine carboxypeptidase-like 11 [Arabidopsis thaliana]
AT2G23010	1.91119645415798	0.620600318832289	0.00207283580286923	0.0260786289397492	Up	2.13	4.10	8.71	15.14	AT2G23010	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0019748,secondary metabolic process; GO:0047158,sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity; 	--	NP_179884.1 serine carboxypeptidase-like 9 [Arabidopsis thaliana]
AT2G23090	0.761840852636116	0.263979314936297	0.00390188360905374	0.0431013946307316	Up	148.28	226.00	334.60	309.34	AT2G23090	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_565547.1 Uncharacterized protein family SERF [Arabidopsis thaliana]
AT2G23120	-0.601809579574559	0.245176321538152	0.0141041780889716	0.116099753944057	Down	260.32	279.99	187.47	173.87	AT2G23120	GO:0005773,vacuole; GO:0005829,cytosol; 	--	NP_565548.1 Late embryogenesis abundant protein, group 6 [Arabidopsis thaliana]
AT2G23390	0.899453453937434	0.412110022857766	0.0290684781636646	0.196106809392173	Up	8.36	9.91	18.18	16.39	AT2G23390	--	K09919; uncharacterized protein; K09919; 	NP_001323779.1 acyl-CoA [Arabidopsis thaliana]
AT2G23510	-2.48351056375369	1.12386419102654	0.0271193253286427	1	Down	3.11	4.56	0.75	0.64	AT2G23510	GO:0006596,polyamine biosynthetic process; GO:0008216,spermidine metabolic process; GO:0016410,N-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0080072,spermidine:sinapoyl CoA N-acyltransferase activity; GO:0080089,sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity; 	SDT; spermidine disinapoyl transferase [EC:2.3.1.248]; K20239; 	NP_179932.1 spermidine disinapoyl acyltransferase [Arabidopsis thaliana]
AT2G23670	-0.987237914650645	0.269551394379039	0.000249744287105532	0.00468695594787312	Down	121.79	129.26	68.96	59.39	AT2G23670	GO:0003674,molecular_function; GO:0005773,vacuole; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; 	--	NP_565556.1 homolog of Synechocystis YCF37 [Arabidopsis thaliana]
AT2G23680	-5.35556598499778	1.12606241124004	1.97455046138324e-06	7.20420543337033e-05	Down	105.22	32.08	1.18	2.28	AT2G23680	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; 	--	NP_001118373.1 Cold acclimation protein WCOR413 family [Arabidopsis thaliana]
AT2G23800	-1.21174801435689	0.159734350148562	3.29880899431496e-14	5.93068486586625e-12	Down	217.30	203.32	85.63	99.34	AT2G23800	GO:0004161,dimethylallyltranstransferase activity; GO:0004311,farnesyltranstransferase activity; GO:0004337,geranyltranstransferase activity; GO:0004659,prenyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0008299,isoprenoid biosynthetic process; GO:0016020,membrane; GO:0016117,carotenoid biosynthetic process; GO:0016740,transferase activity; GO:0033384,geranyl diphosphate biosynthetic process; GO:0033386,geranylgeranyl diphosphate biosynthetic process; GO:0045337,farnesyl diphosphate biosynthetic process; GO:0046872,metal ion binding; 	GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; K13789; 	NP_179960.1 geranylgeranyl pyrophosphate synthase 2 [Arabidopsis thaliana]
AT2G23810	-0.819426208489317	0.300782263677215	0.00644346445072243	0.0635888436843371	Down	53.58	70.17	37.36	33.78	AT2G23810	GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0050829,defense response to Gram-negative bacterium; 	--	NP_850045.2 tetraspanin8 [Arabidopsis thaliana]
AT2G23930	0.658145100340568	0.259081048393287	0.0110755569943599	0.0968915969781624	Up	155.23	155.77	240.24	258.86	AT2G23930	GO:0000387,spliceosomal snRNP assembly; GO:0000398,mRNA splicing, via spliceosome; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005682,U5 snRNP; GO:0005685,U1 snRNP; GO:0005686,U2 snRNP; GO:0005687,U4 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0005773,vacuole; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0034719,SMN-Sm protein complex; GO:0043186,P granule; GO:0043229,intracellular organelle; GO:0071004,U2-type prespliceosome; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:0097526,spliceosomal tri-snRNP complex; GO:1990904,ribonucleoprotein complex; 	SNRPG, SMG; small nuclear ribonucleoprotein G; K11099; 	NP_179971.1 Putative small nuclear ribonucleoprotein G [Arabidopsis thaliana]
AT2G24000	-1.65496185264064	0.521740273743939	0.00151391304099639	0.0204353550310775	Down	25.70	15.14	3.14	10.26	AT2G24000	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009742,brassinosteroid mediated signaling pathway; GO:0016787,hydrolase activity; 	--	NP_179978.2 serine carboxypeptidase-like 22 [Arabidopsis thaliana]
AT2G24050	1.10722848792341	0.187381856482134	3.4431227135905e-09	2.28406081615455e-07	Up	30.80	27.66	63.46	64.57	AT2G24050	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0006412,translation; GO:0006413,translational initiation; GO:0006417,regulation of translation; GO:0016281,eukaryotic translation initiation factor 4F complex; 	EIF4G; translation initiation factor 4G; K03260; 	NP_179983.1 MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana]
AT2G24210	-1.20386652646009	0.131908319378047	7.07236180944645e-20	2.74164525769323e-17	Down	220.44	251.42	105.26	102.84	AT2G24210	GO:0000287,magnesium ion binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009753,response to jasmonic acid; GO:0010333,terpene synthase activity; GO:0016099,monoterpenoid biosynthetic process; GO:0016102,diterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0034768,(E)-beta-ocimene synthase activity; GO:0046872,metal ion binding; GO:0050551,myrcene synthase activity; GO:0080027,response to herbivore; GO:0102701,tricyclene synthase activity; 	E4.2.3.15; myrcene/ocimene synthase [EC:4.2.3.15]; K12467; 	NP_179998.1 terpene synthase 10 [Arabidopsis thaliana]
AT2G24230	-1.07642476146029	0.425809626854068	0.0114731215371773	0.0993935020175589	Down	10.70	8.74	4.48	4.91	AT2G24230	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; 	--	NP_850049.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]
AT2G24430	-4.05420237420759	2.00971926859171	0.0436644391070983	1	Down	5.91	0.54	0.35	0.00	AT2G24430	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; 	--	NP_180019.1 NAC domain containing protein 38 [Arabidopsis thaliana]
AT2G24450	-1.2625014324909	0.566098258997416	0.0257354465526795	0.179151635514023	Down	23.90	16.19	11.61	5.15	AT2G24450	GO:0005886,plasma membrane; GO:0016020,membrane; 	--	NP_180021.1 FASCICLIN-like arabinogalactan protein 3 precursor [Arabidopsis thaliana]
AT2G24580	-0.829371741167158	0.407150240088421	0.0416483924562512	0.24590590595897	Down	24.35	20.17	9.71	15.95	AT2G24580	GO:0008115,sarcosine oxidase activity; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; 	PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7]; K00306; 	NP_180034.1 FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]
AT2G24700	1.12767898580517	0.475458347557268	0.0177029919801751	0.137511343465292	Up	6.32	4.48	12.54	11.44	AT2G24700	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; 	--	NP_180046.2 Transcriptional factor B3 family protein [Arabidopsis thaliana]
AT2G25080	-0.722074886370184	0.237182726415709	0.00233158669646299	0.0286369633362608	Down	118.63	110.10	78.79	61.62	AT2G25080	GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005773,vacuole; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0047066,phospholipid-hydroperoxide glutathione peroxidase activity; GO:0098869,cellular oxidant detoxification; GO:0110165,cellular anatomical entity; 	gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9]; K00432; 	NP_180080.1 glutathione peroxidase 1 [Arabidopsis thaliana]
AT2G25185	-4.8021406759172	2.2481686247358	0.032677510672104	1	Down	8.34	4.17	0.00	0.00	AT2G25185	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001031411.1 Defensin-like (DEFL) family protein [Arabidopsis thaliana]
AT2G25210	0.804889535768743	0.370312704015562	0.0297396862644315	0.19909426271187	Up	145.78	110.63	227.46	228.15	AT2G25210	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; 	RP-L39e, RPL39; large subunit ribosomal protein L39e; K02924; 	NP_180093.1 Ribosomal protein L39 family protein [Arabidopsis thaliana]
AT2G25260	-2.76311424822163	0.791927627247986	0.000484650802555688	1	Down	10.01	11.48	1.25	2.01	AT2G25260	GO:0005575,cellular_component; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0102562,hydroxyproline O-arbinofuranose transferase activity; GO:1990585,hydroxyproline O-arabinosyltransferase activity; 	HPAT; hydroxyproline O-arabinosyltransferase [EC:2.4.2.58]; K20782; 	NP_180098.3 Hyp O-arabinosyltransferase-like protein [Arabidopsis thaliana]
AT2G25280	-1.05359421692622	0.373397061104568	0.00477779269267598	0.0501425705183126	Down	50.01	42.62	30.05	14.86	AT2G25280	--	--	NP_565590.1 AmmeMemoRadiSam system protein B [Arabidopsis thaliana]
AT2G25640	1.50642608965117	0.486430249833379	0.00195555493020787	0.024880675804337	Up	3.00	3.29	7.48	10.73	AT2G25640	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006414,translational elongation; 	--	NP_180135.2 SPOC domain / Transcription elongation factor S-II protein [Arabidopsis thaliana]
AT2G25680	-4.15915382130444	1.84560617572025	0.0242249004942224	1	Down	2.73	2.25	0.00	0.32	AT2G25680	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0015098,molybdate ion transmembrane transporter activity; GO:0015689,molybdate ion transport; GO:0016020,membrane; GO:0031966,mitochondrial membrane; 	--	NP_180139.1 molybdate transporter 1 [Arabidopsis thaliana]
AT2G25890	-1.42935796784948	0.506202188438279	0.0047474304245303	0.0499506992504651	Down	33.02	42.67	12.21	16.53	AT2G25890	GO:0003674,molecular_function; GO:0005811,lipid droplet; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0048608,reproductive structure development; 	--	NP_001324024.1 Oleosin family protein [Arabidopsis thaliana]
AT2G25980	-2.54581850473731	0.71451646912939	0.000366647865384629	0.00641504480972683	Down	26.03	5.15	2.25	3.21	AT2G25980	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding; 	--	NP_001325173.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]
AT2G26000	1.02680630777429	0.424308491322377	0.0155225432949319	0.124551843191223	Up	7.81	8.23	15.47	17.77	AT2G26000	GO:0000151,ubiquitin ligase complex; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0007265,Ras protein signal transduction; GO:0008270,zinc ion binding; GO:0010029,regulation of seed germination; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043130,ubiquitin binding; GO:0046872,metal ion binding; GO:0046982,protein heterodimerization activity; GO:0061630,ubiquitin protein ligase activity; 	BRAP; BRCA1-associated protein [EC:2.3.2.27]; K10632; 	NP_001031419.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]
AT2G26030	2.01021286818351	0.820339918697674	0.0142672504189237	1	Up	1.22	1.92	8.54	4.20	AT2G26030	GO:0005515,protein binding; GO:0008150,biological_process; 	--	NP_973535.1 F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]
AT2G26080	-0.743691883182059	0.114675642711976	8.86274578295775e-11	8.08399716452874e-09	Down	150.07	147.19	92.03	88.28	AT2G26080	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004375,glycine dehydrogenase (decarboxylating) activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005960,glycine cleavage complex; GO:0006544,glycine metabolic process; GO:0006546,glycine catabolic process; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016594,glycine binding; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0030170,pyridoxal phosphate binding; 	GLDC, gcvP; glycine dehydrogenase [EC:1.4.4.2]; K00281; 	NP_180178.1 glycine decarboxylase P-protein 2 [Arabidopsis thaliana]
AT2G26530	1.87414566140044	0.877415745652619	0.0326807488928134	1	Up	1.96	1.89	8.84	5.46	AT2G26530	GO:0010038,response to metal ion; 	--	NP_180221.1 AR781, pheromone receptor-like protein (DUF1645) [Arabidopsis thaliana]
AT2G26730	-0.668217305217723	0.20371410925318	0.00103743839498489	0.0151049569128962	Down	56.05	50.67	34.65	33.57	AT2G26730	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; 	--	NP_180241.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]
AT2G26900	-0.990313217893821	0.161496641225655	8.67276917774886e-10	6.40391081249848e-08	Down	184.96	195.96	87.79	107.57	AT2G26900	GO:0006849,plasma membrane pyruvate transport; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0050833,pyruvate transmembrane transporter activity; 	TC.BASS; bile acid:Na+ symporter, BASS family; K03453; 	NP_850089.1 Sodium Bile acid symporter family [Arabidopsis thaliana]
AT2G27050	-1.13808597068747	0.523189207287484	0.0296087177966707	0.198645832486588	Down	8.54	10.86	5.19	3.71	AT2G27050	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009723,response to ethylene; GO:0009873,ethylene-activated signaling pathway; GO:0009970,cellular response to sulfate starvation; GO:0042742,defense response to bacterium; 	EIN3; ethylene-insensitive protein 3; K14514; 	NP_180273.1 ETHYLENE-INSENSITIVE3-like 1 [Arabidopsis thaliana]
AT2G27090	0.85753486174457	0.423913322480614	0.0430833121926541	0.251522022724857	Up	5.88	5.19	10.28	10.11	AT2G27090	GO:0005886,plasma membrane; GO:0009506,plasmodesma; 	--	NP_001324823.1 bZIP transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]
AT2G27290	-1.48972754575092	0.336190947683676	9.37124244360317e-06	0.000285627180621369	Down	81.96	76.06	23.94	33.65	AT2G27290	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; 	--	NP_565645.1 FAM210B-like protein, putative (DUF1279) [Arabidopsis thaliana]
AT2G27590	0.861194087443778	0.396155250092284	0.0297141271163138	0.19909426271187	Up	14.03	12.20	21.41	27.14	AT2G27590	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0032259,methylation; 	--	NP_565655.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT2G27840	1.15771459124711	0.269325151822424	1.71899080947053e-05	0.000492473002112747	Up	40.86	41.75	105.28	81.56	AT2G27840	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006325,chromatin organization; GO:0010162,seed dormancy process; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; 	--	NP_565661.2 histone deacetylase-related / HD-like protein [Arabidopsis thaliana]
AT2G27880	-0.602694338765508	0.273047665301447	0.0272940720270277	0.187062410770872	Down	17.45	22.02	14.31	12.03	AT2G27880	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004521,endoribonuclease activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0006952,defense response; GO:0009615,response to virus; GO:0009616,RNAi-mediated antiviral immune response; GO:0031047,gene silencing by RNA; GO:0035194,post-transcriptional gene silencing by RNA; GO:0046872,metal ion binding; GO:0051607,defense response to virus; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; GO:0098542,defense response to other organism; GO:1990904,ribonucleoprotein complex; 	ELF2C, AGO; eukaryotic translation initiation factor 2C; K11593; 	NP_850110.1 Argonaute family protein [Arabidopsis thaliana]
AT2G28140	2.09466383608541	0.843468315228554	0.0130137196532391	1	Up	3.68	2.02	10.61	14.32	AT2G28140	--	--	NP_180381.3 enabled-like protein (DUF1635) [Arabidopsis thaliana]
AT2G28350	-1.22831245260669	0.428990811370173	0.00419305650462024	0.0456671342755171	Down	13.14	11.23	5.18	5.41	AT2G28350	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007389,pattern specification process; GO:0009725,response to hormone; GO:0009734,auxin-activated signaling pathway; GO:0009738,abscisic acid-activated signaling pathway; GO:0009743,response to carbohydrate; GO:0010154,fruit development; GO:0031540,regulation of anthocyanin biosynthetic process; GO:0035198,miRNA binding; GO:0048366,leaf development; GO:0048441,petal development; GO:0048442,sepal development; GO:0048589,developmental growth; GO:0048829,root cap development; GO:0051301,cell division; 	--	NP_180402.1 auxin response factor 10 [Arabidopsis thaliana]
AT2G28450	0.794542159065137	0.246353074193252	0.00125877153159025	0.0175377839868612	Up	16.29	16.96	27.77	30.88	AT2G28450	GO:0000976,transcription cis-regulatory region binding; GO:0001510,RNA methylation; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0046872,metal ion binding; 	--	NP_180412.2 zinc finger (CCCH-type) family protein [Arabidopsis thaliana]
AT2G28630	-0.942202220625785	0.186028547820337	4.08773605371435e-07	1.7073523820312e-05	Down	143.91	114.09	75.46	60.63	AT2G28630	GO:0005783,endoplasmic reticulum; GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity; 	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397; 	NP_001318305.1 3-ketoacyl-CoA synthase 12 [Arabidopsis thaliana]
AT2G28740	-0.732634652969896	0.183378942464868	6.46409980179545e-05	0.0015186961750241	Down	468.58	463.84	311.49	257.23	AT2G28740	GO:0000325,plant-type vacuole; GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; 	H4; histone H4; K11254; 	GAV57897.1 Histone domain-containing protein, partial [Cephalotus follicularis]
AT2G28830	1.66173441449357	0.400059651298014	3.27118275738863e-05	0.00085943694366418	Up	8.31	9.42	40.13	16.62	AT2G28830	GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0016567,protein ubiquitination; 	--	NP_001318308.1 armadillo/beta-catenin repeat protein [Arabidopsis thaliana]
AT2G29940	-0.587913292591742	0.299789514201741	0.0498688852429712	0.275678931122575	Down	12.04	9.44	7.33	7.19	AT2G29940	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0009738,abscisic acid-activated signaling pathway; GO:0010208,pollen wall assembly; GO:0010496,intercellular transport; GO:0015562,efflux transmembrane transporter activity; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0048581,negative regulation of post-embryonic development; GO:0055085,transmembrane transport; GO:0070505,pollen coat; GO:0080168,abscisic acid transport; GO:0140352,export from cell; GO:0140359,ABC-type transporter activity; GO:1901656,glycoside transport; 	ABCG2.PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR; K08711; 	NP_180555.2 pleiotropic drug resistance 3 [Arabidopsis thaliana]
AT2G29960	-0.585504208556427	0.218457863542342	0.00735847827116323	0.0704879713928802	Down	153.10	151.70	114.15	91.63	AT2G29960	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005737,cytoplasm; GO:0005771,multivesicular body; GO:0005777,peroxisome; GO:0005783,endoplasmic reticulum; GO:0005795,Golgi stack; GO:0005829,cytosol; GO:0006457,protein folding; GO:0016018,cyclosporin A binding; GO:0016020,membrane; GO:0016853,isomerase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0061083,regulation of protein refolding; GO:0099503,secretory vesicle; 	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802; 	NP_001318316.1 cyclophilin 5 [Arabidopsis thaliana]
AT2G30000	1.10637969172398	0.317728132054695	0.000497389332039913	0.00838330796733032	Up	68.95	60.32	124.64	158.93	AT2G30000	GO:0000398,mRNA splicing, via spliceosome; GO:0005686,U2 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0071011,precatalytic spliceosome; 	PHF5A; PHD finger-like domain-containing protein 5A; K12834; 	NP_001077473.1 PHF5-like protein [Arabidopsis thaliana]
AT2G30060	-0.649276275743691	0.216362672644883	0.00269209379212431	0.0320186227145754	Down	139.00	135.45	90.81	86.90	AT2G30060	GO:0005096,GTPase activator activity; GO:0005634,nucleus; GO:0005643,nuclear pore; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006913,nucleocytoplasmic transport; GO:0015031,protein transport; GO:0046907,intracellular transport; GO:0050790,regulation of catalytic activity; GO:0051028,mRNA transport; 	--	NP_180567.1 Pleckstrin homology (PH) domain superfamily protein [Arabidopsis thaliana]
AT2G30310	3.0025510470048	0.647065727974824	3.4797673498809e-06	0.000118589324107892	Up	1.30	2.86	20.31	13.26	AT2G30310	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_180590.1 GDSL-like Lipase/Acylhydrolase family protein [Arabidopsis thaliana]
AT2G30470	0.757562374871904	0.324780438110786	0.0196724610538056	0.147822372483919	Up	10.47	9.66	14.93	19.74	AT2G30470	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005739,mitochondrion; GO:0008270,zinc ion binding; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding; 	--	NP_850146.1 B3 domain-containing transcription repressor VAL1 [Arabidopsis thaliana]
AT2G30570	-0.655988865315814	0.104840665515987	3.92433710969318e-10	3.10072623221299e-08	Down	1514.72	1525.82	969.53	991.73	AT2G30570	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042549,photosystem II stabilization; 	psbW; photosystem II PsbW protein; K02721; 	NP_180615.1 photosystem II reaction center W [Arabidopsis thaliana]
AT2G30630	-1.75028871344362	0.817884203216113	0.0323531345811894	1	Down	4.65	5.57	0.81	2.35	AT2G30630	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0008150,biological_process; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016787,hydrolase activity; 	--	NP_001325409.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT2G30800	0.611863086356692	0.276296529742671	0.0267933031724068	0.18465051436317	Up	8.65	9.57	15.66	12.57	AT2G30800	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]; K14442; 	NP_850154.2 helicase in vascular tissue and tapetum [Arabidopsis thaliana]
AT2G31430	-1.32738568067275	0.585859280020878	0.0234693068245883	0.168189919791461	Down	22.13	30.52	9.37	12.05	AT2G31430	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0010029,regulation of seed germination; GO:0030599,pectinesterase activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; GO:0048046,apoplast; 	--	NP_180701.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT2G31530	0.691947612352504	0.291015181337403	0.0174208603768004	0.13608675879988	Up	16.27	18.78	31.05	26.36	AT2G31530	GO:0005048,signal sequence binding; GO:0006616,SRP-dependent cotranslational protein targeting to membrane, translocation; GO:0008320,protein transmembrane transporter activity; GO:0009501,amyloplast; GO:0009507,chloroplast; GO:0009526,plastid envelope; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0010027,thylakoid membrane organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0033097,amyloplast membrane; GO:0072598,protein localization to chloroplast; 	--	NP_180711.4 SecY protein transport family protein [Arabidopsis thaliana]
AT2G31740	0.929689117489507	0.234432166146038	7.31789275999911e-05	0.00169679363902409	Up	18.99	17.71	35.33	35.72	AT2G31740	GO:0003674,molecular_function; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; 	--	NP_850171.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT2G31980	-1.3524812514413	0.164999555934387	2.46710340018096e-16	6.51157822962655e-14	Down	490.21	468.61	184.68	197.37	AT2G31980	GO:0003674,molecular_function; GO:0004869,cysteine-type endopeptidase inhibitor activity; GO:0005575,cellular_component; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0010466,negative regulation of peptidase activity; GO:0010951,negative regulation of endopeptidase activity; GO:0030414,peptidase inhibitor activity; 	--	NP_180758.1 PHYTOCYSTATIN 2 [Arabidopsis thaliana]
AT2G32220	1.41111321713333	0.396924039478162	0.000377804352409642	0.00659164977727371	Up	30.43	27.14	89.32	65.92	AT2G32220	GO:0003735,structural constituent of ribosome; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L27e, RPL27; large subunit ribosomal protein L27e; K02901; 	NP_180781.1 Ribosomal L27e protein family [Arabidopsis thaliana]
AT2G32350	1.15734013160662	0.459523580633676	0.0117834041295212	0.101157874205336	Up	11.57	16.60	37.96	25.59	AT2G32350	GO:0005515,protein binding; GO:0005654,nucleoplasm; GO:0005829,cytosol; GO:0031593,polyubiquitin modification-dependent protein binding; GO:0043130,ubiquitin binding; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0070628,proteasome binding; 	--	NP_180794.2 Ubiquitin-like superfamily protein [Arabidopsis thaliana]
AT2G32790	2.01846784285131	0.697169893108547	0.00378879681827538	1	Up	3.07	8.20	23.38	22.75	AT2G32790	GO:0000209,protein polyubiquitination; GO:0005634,nucleus; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0061631,ubiquitin conjugating enzyme activity; 	--	NP_565754.1 Ubiquitin-conjugating enzyme family protein [Arabidopsis thaliana]
AT2G33370	0.8044808952771	0.142833158224049	1.7780974422823e-08	1.00718259230648e-06	Up	417.07	484.57	742.70	858.40	AT2G33370	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005730,nucleolus; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L23e, RPL23; large subunit ribosomal protein L23e; K02894; 	NP_180895.1 Ribosomal protein L14p/L23e family protein [Arabidopsis thaliana]
AT2G33470	0.973969672331053	0.156960963115972	5.4637336492597e-10	4.15813594595501e-08	Up	188.89	233.83	424.44	418.85	AT2G33470	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006869,lipid transport; GO:0035627,ceramide transport; GO:0120009,intermembrane lipid transfer; GO:0120013,lipid transfer activity; GO:1902387,ceramide 1-phosphate binding; GO:1902388,ceramide 1-phosphate transfer activity; GO:1902389,ceramide 1-phosphate transport; 	--	NP_565766.1 glycolipid transfer protein 1 [Arabidopsis thaliana]
AT2G33510	0.840734599038451	0.407384567552289	0.03904266066598	0.236672586502262	Up	19.81	27.22	38.41	47.26	AT2G33510	GO:0000166,nucleotide binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0016787,hydrolase activity; GO:0042335,cuticle development; 	--	NP_180909.2 ATP-dependent RNA helicase [Arabidopsis thaliana]
AT2G33580	-1.86094643496139	0.826684210029348	0.0243793875179063	1	Down	4.35	6.45	2.71	0.22	AT2G33580	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0008061,chitin binding; GO:0016020,membrane; GO:0042803,protein homodimerization activity; GO:0045087,innate immune response; GO:0071323,cellular response to chitin; 	--	NP_180916.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT2G33770	0.825488897533238	0.323531516194607	0.010726200433246	0.0944347170861723	Up	7.74	8.79	13.87	15.93	AT2G33770	GO:0000139,Golgi membrane; GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0006817,phosphate ion transport; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0016874,ligase activity; GO:0055062,phosphate ion homeostasis; GO:0061631,ubiquitin conjugating enzyme activity; GO:2000185,regulation of phosphate transmembrane transport; 	UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24]; K10581; 	NP_850218.1 phosphate 2 [Arabidopsis thaliana]
AT2G34260	1.00116689291266	0.265564236125932	0.000163272863016291	0.00324063978514734	Up	27.67	31.59	56.97	63.63	AT2G34260	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009553,embryo sac development; GO:0009793,embryo development ending in seed dormancy; GO:0009855,determination of bilateral symmetry; GO:0009960,endosperm development; GO:0010197,polar nucleus fusion; GO:0080186,developmental vegetative growth; 	--	NP_565782.1 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT2G34357	0.8461263559326	0.162842309722076	2.03637622098935e-07	8.98976762326436e-06	Up	27.25	30.69	55.93	49.78	AT2G34357	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; 	--	NP_973597.1 ARM repeat superfamily protein [Arabidopsis thaliana]
AT2G34420	-0.908035484626885	0.112608349963954	7.40433091222791e-16	1.6700131812034e-13	Down	756.89	814.14	406.80	444.69	AT2G34420	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; 	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912; 	NP_565786.1 photosystem II light harvesting complex protein B1B2 [Arabidopsis thaliana]
AT2G34430	-1.19902194205688	0.342856397432781	0.000470248636146062	0.00799100593341356	Down	56.45	47.26	20.64	25.45	AT2G34430	GO:0005783,endoplasmic reticulum; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; 	LHCB1; light-harvesting complex II chlorophyll a/b binding protein 1; K08912; 	NP_565787.1 light-harvesting chlorophyll-protein complex II subunit B1 [Arabidopsis thaliana]
AT2G34520	0.747871862345267	0.230152722164077	0.00115624695244474	0.0164110336900195	Up	120.69	106.12	166.34	221.73	AT2G34520	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0015935,small ribosomal subunit; GO:0110165,cellular anatomical entity; GO:1990904,ribonucleoprotein complex; 	RP-S14, MRPS14, rpsN; small subunit ribosomal protein S14; K02954; 	NP_850232.1 mitochondrial ribosomal protein S14 [Arabidopsis thaliana]
AT2G34710	0.777693862859356	0.327219403678828	0.0174695179037613	0.136209534629892	Up	11.08	11.77	14.37	25.60	AT2G34710	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008289,lipid binding; GO:0009855,determination of bilateral symmetry; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0009955,adaxial/abaxial pattern specification; GO:0010014,meristem initiation; GO:0010072,primary shoot apical meristem specification; GO:0030154,cell differentiation; GO:0080060,integument development; 	--	NP_181018.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana]
AT2G34860	-1.17297899737953	0.386656412075276	0.00241617104610267	0.0294137407526041	Down	57.63	55.08	28.87	21.65	AT2G34860	GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009561,megagametogenesis; GO:0009579,thylakoid; GO:0010027,thylakoid membrane organization; GO:0046872,metal ion binding; GO:0047134,protein-disulfide reductase (NAD(P)) activity; GO:0048564,photosystem I assembly; 	--	NP_001078004.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein [Arabidopsis thaliana]
AT2G34900	0.777396412792795	0.344165508452137	0.0238966671444773	0.170171157248703	Up	15.34	21.51	33.43	30.64	AT2G34900	GO:0000785,chromatin; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0010030,positive regulation of seed germination; GO:0045893,positive regulation of DNA-templated transcription; GO:0070577,lysine-acetylated histone binding; 	--	NP_181036.2 Transcription factor GTE6 [Arabidopsis thaliana]
AT2G35040	0.764155283961586	0.182857305763735	2.92831680624471e-05	0.000782882973738484	Up	43.04	45.15	75.18	77.03	AT2G35040	GO:0003824,catalytic activity; GO:0003937,IMP cyclohydrolase activity; GO:0004643,phosphoribosylaminoimidazolecarboxamide formyltransferase activity; GO:0005829,cytosol; GO:0006164,purine nucleotide biosynthetic process; GO:0006189,'de novo' IMP biosynthetic process; GO:0008152,metabolic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010319,stromule; GO:0016740,transferase activity; GO:0016787,hydrolase activity; 	purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]; K00602; 	NP_850240.1 AICARFT/IMPCHase bienzyme family protein [Arabidopsis thaliana]
AT2G35200	5.28833847336264	2.35230819873837	0.0245667135229855	1	Up	0.00	0.00	4.45	1.43	AT2G35200	GO:0003674,molecular_function; 	--	NP_181064.1 DUF740 family protein [Arabidopsis thaliana]
AT2G35370	-0.666047375017281	0.232860294531845	0.00423257188962804	0.0458738970211263	Down	152.90	175.81	112.48	97.56	AT2G35370	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005960,glycine cleavage complex; GO:0009249,protein lipoylation; GO:0009579,thylakoid; GO:0019464,glycine decarboxylation via glycine cleavage system; 	gcvH, GCSH; glycine cleavage system H protein; K02437; 	NP_181080.1 glycine decarboxylase complex H [Arabidopsis thaliana]
AT2G35555	5.06810423228701	2.43075147927122	0.0370697711347549	1	Up	0.00	0.00	3.66	4.70	AT2G35555	GO:0004867,serine-type endopeptidase inhibitor activity; GO:0005615,extracellular space; GO:0010951,negative regulation of endopeptidase activity; 	--	NP_001323897.1 serpin [Arabidopsis thaliana]
AT2G35750	1.2629483060787	0.266800580283334	2.20486328362743e-06	7.90500839115557e-05	Up	182.65	137.06	386.43	394.16	AT2G35750	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_181118.1 transmembrane protein [Arabidopsis thaliana]
AT2G35795	1.26292713804442	0.49940139306382	0.0114426526924267	0.0993324749122137	Up	17.97	32.66	71.67	51.19	AT2G35795	GO:0001405,PAM complex, Tim23 associated import motor; GO:0001671,ATPase activator activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0016020,membrane; GO:0030150,protein import into mitochondrial matrix; 	--	NP_565824.1 Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]
AT2G36160	0.724590748332832	0.129410042353498	2.1536206415687e-08	1.1717396516956e-06	Up	523.40	583.22	997.44	859.01	AT2G36160	GO:0000028,ribosomal small subunit assembly; GO:0000325,plant-type vacuole; GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:0048027,mRNA 5'-UTR binding; GO:0070181,small ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-S14e, RPS14; small subunit ribosomal protein S14e; K02955; 	NP_181158.1 Ribosomal protein S11 family protein [Arabidopsis thaliana]
AT2G36170	0.802439010317494	0.207268267766241	0.000108167846527281	0.00230158170869799	Up	148.32	154.37	278.15	257.82	AT2G36170	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0022625,cytosolic large ribosomal subunit; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding; GO:1990904,ribonucleoprotein complex; 	RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e; K02927; 	NP_565836.1 60S ribosomal protein L40-1 [Arabidopsis thaliana]
AT2G36190	-0.632014837301091	0.202676128918564	0.00181867509966493	0.023476237889015	Down	58.18	58.43	37.43	39.08	AT2G36190	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004564,beta-fructofuranosidase activity; GO:0004575,sucrose alpha-glucosidase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0005982,starch metabolic process; GO:0005987,sucrose catabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast; GO:0048481,plant ovule development; GO:0071836,nectar secretion; 	INV, sacA; beta-fructofuranosidase [EC:3.2.1.26]; K01193; 	NP_565837.1 cell wall invertase 4 [Arabidopsis thaliana]
AT2G36490	-0.645747516936504	0.215429390284972	0.00272212483118849	0.0322521093895828	Down	21.18	23.09	14.04	14.73	AT2G36490	GO:0003677,DNA binding; GO:0003824,catalytic activity; GO:0003906,DNA-(apurinic or apyrimidinic site) endonuclease activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006259,DNA metabolic process; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0006306,DNA methylation; GO:0016829,lyase activity; GO:0019104,DNA N-glycosylase activity; GO:0035514,DNA demethylase activity; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0080111,DNA demethylation; GO:0140078,class I DNA-(apurinic or apyrimidinic site) endonuclease activity; 	--	NP_181190.3 demeter-like 1 [Arabidopsis thaliana]
AT2G36620	0.922871111084011	0.152188890948365	1.32789766359284e-09	9.41289743821092e-08	Up	399.48	357.91	632.63	828.19	AT2G36620	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L24e, RPL24; large subunit ribosomal protein L24e; K02896; 	NP_565851.1 ribosomal protein L24 [Arabidopsis thaliana]
AT2G36660	-2.07961811247484	0.856741408100062	0.0152092393800811	1	Down	6.40	3.52	1.84	0.47	AT2G36660	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003730,mRNA 3'-UTR binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006417,regulation of translation; GO:0008143,poly(A) binding; GO:0008266,poly(U) RNA binding; GO:1990904,ribonucleoprotein complex; 	PABPC; polyadenylate-binding protein; K13126; 	NP_181204.1 poly(A) binding protein 7 [Arabidopsis thaliana]
AT2G36790	1.84040795124231	0.742018112966661	0.0131281597142153	1	Up	1.73	2.08	4.31	9.62	AT2G36790	GO:0005783,endoplasmic reticulum; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0035251,UDP-glucosyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; GO:0080046,quercetin 4'-O-glucosyltransferase activity; 	UGT73C6; flavonol-3-O-L-rhamnoside-7-O-glucosyltransferase [EC:2.4.1.-]; K22771; 	NP_181217.1 UDP-glucosyl transferase 73C6 [Arabidopsis thaliana]
AT2G36885	-1.2101643306796	0.348716355015438	0.000519799842855318	0.00866682399276911	Down	62.29	46.09	21.88	25.88	AT2G36885	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0005886,plasma membrane; GO:0006413,translational initiation; GO:0016020,membrane; 	--	NP_565853.1 translation initiation factor [Arabidopsis thaliana]
AT2G36930	1.07319234065195	0.325419133238943	0.000974187286242642	0.014369552064019	Up	34.54	31.06	71.22	69.03	AT2G36930	GO:0003676,nucleic acid binding; GO:0005575,cellular_component; GO:0008270,zinc ion binding; GO:0010468,regulation of gene expression; GO:0046872,metal ion binding; 	--	NP_565854.1 zinc finger (C2H2 type) family protein [Arabidopsis thaliana]
AT2G36985	5.5714372666206	2.19857159013317	0.011273114014016	1	Up	0.00	0.00	8.33	18.74	AT2G36985	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0008285,negative regulation of cell population proliferation; GO:0009416,response to light stimulus; GO:0016020,membrane; GO:0042127,regulation of cell population proliferation; GO:0048367,shoot system development; 	--	NP_973616.1 DVL family protein [Arabidopsis thaliana]
AT2G36990	0.609233373571044	0.252439930299631	0.0158053496136768	0.126229341449482	Up	27.79	27.10	48.44	36.41	AT2G36990	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0006352,DNA-templated transcription initiation; GO:0006355,regulation of DNA-templated transcription; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016987,sigma factor activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0071482,cellular response to light stimulus; GO:0071483,cellular response to blue light; GO:0090351,seedling development; GO:2000142,regulation of DNA-templated transcription initiation; 	--	NP_565856.1 RNApolymerase sigma-subunit F [Arabidopsis thaliana]
AT2G37040	-0.65111575383711	0.118451407936653	3.86521862173534e-08	1.98132384308376e-06	Down	188.68	198.51	124.88	125.68	AT2G37040	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006559,L-phenylalanine catabolic process; GO:0006952,defense response; GO:0006979,response to oxidative stress; GO:0009555,pollen development; GO:0009698,phenylpropanoid metabolic process; GO:0009800,cinnamic acid biosynthetic process; GO:0009819,drought recovery; GO:0010224,response to UV-B; GO:0016829,lyase activity; GO:0016841,ammonia-lyase activity; GO:0045548,phenylalanine ammonia-lyase activity; GO:0046244,salicylic acid catabolic process; GO:0046274,lignin catabolic process; 	PAL; phenylalanine ammonia-lyase [EC:4.3.1.24]; K10775; 	NP_181241.1 PHE ammonia lyase 1 [Arabidopsis thaliana]
AT2G37110	-0.747113878519255	0.214147941593335	0.000485240307698756	0.00818966805034432	Down	137.55	129.64	76.38	85.69	AT2G37110	--	--	NP_565858.1 PLAC8 family protein [Arabidopsis thaliana]
AT2G37120	1.18337740528044	0.401940255867991	0.00323829983464094	0.0369899718680671	Up	62.88	55.74	169.45	103.29	AT2G37120	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016020,membrane; 	--	NP_565859.1 S1FA-like DNA-binding protein [Arabidopsis thaliana]
AT2G37130	1.06533590387668	0.193228957878145	3.52097878184471e-08	1.82752057693655e-06	Up	87.62	75.37	150.21	197.07	AT2G37130	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0006979,response to oxidative stress; GO:0009505,plant-type cell wall; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0048511,rhythmic process; GO:0050832,defense response to fungus; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity; 	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430; 	NP_181250.1 Peroxidase superfamily protein [Arabidopsis thaliana]
AT2G37190	0.956992426947499	0.11891568543516	8.43953562712595e-16	1.86950784740174e-13	Up	459.69	434.83	882.35	882.35	AT2G37190	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0008270,zinc ion binding; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L12e, RPL12; large subunit ribosomal protein L12e; K02870; 	NP_181256.1 Ribosomal protein L11 family protein [Arabidopsis thaliana]
AT2G37195	-4.62547957891622	2.3197661935377	0.046158377526136	1	Down	4.34	3.58	0.00	0.00	AT2G37195	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_001323532.1 acyl-CoA-binding domain protein [Arabidopsis thaliana]
AT2G37270	0.734343951580053	0.114549227099914	1.44826268388359e-10	1.26519004180112e-08	Up	800.49	654.08	1219.46	1239.56	AT2G37270	GO:0000028,ribosomal small subunit assembly; GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S5e, RPS5; small subunit ribosomal protein S5e; K02989; 	NP_001031502.1 ribosomal protein 5B [Arabidopsis thaliana]
AT2G37300	2.0311147129014	0.84093670966763	0.0157222399684041	1	Up	4.08	1.38	14.00	8.71	AT2G37300	GO:0003674,molecular_function; GO:0016020,membrane; 	--	NP_001325186.1 transmembrane protein [Arabidopsis thaliana]
AT2G37340	0.723440510923379	0.265365961702198	0.00640682913665416	0.063328060111709	Up	39.05	36.00	63.86	62.04	AT2G37340	GO:0000245,spliceosomal complex assembly; GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0046872,metal ion binding; 	SFRS7; splicing factor, arginine/serine-rich 7; K12896; 	NP_850280.1 arginine/serine-rich zinc knuckle-containing protein 33 [Arabidopsis thaliana]
AT2G37420	0.613940900105761	0.268842761512682	0.0223925183657647	0.162159480634741	Up	12.92	10.65	18.71	17.94	AT2G37420	GO:0000070,mitotic sister chromatid segregation; GO:0000166,nucleotide binding; GO:0003777,microtubule motor activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0005876,spindle microtubule; GO:0007018,microtubule-based movement; GO:0008017,microtubule binding; GO:0008574,plus-end-directed microtubule motor activity; GO:0051231,spindle elongation; GO:0072686,mitotic spindle; GO:0090307,mitotic spindle assembly; 	--	NP_001323679.1 ATP binding microtubule motor family protein [Arabidopsis thaliana]
AT2G37480	1.52287613771588	0.341218253929697	8.07989669426431e-06	0.000249952913946007	Up	22.43	29.93	78.45	74.16	AT2G37480	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_850283.1 hypothetical protein AT2G37480 [Arabidopsis thaliana]
AT2G37600	0.882046752338087	0.199662964760378	9.97667495329837e-06	0.000301120809721816	Up	173.32	190.49	342.38	338.68	AT2G37600	GO:0002181,cytoplasmic translation; GO:0003735,structural constituent of ribosome; GO:0005783,endoplasmic reticulum; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L36e, RPL36; large subunit ribosomal protein L36e; K02920; 	NP_001078017.1 Ribosomal protein L36e family protein [Arabidopsis thaliana]
AT2G37690	1.06986033865603	0.265599384114961	5.62299144459176e-05	0.00136236736074533	Up	14.82	17.22	34.99	33.28	AT2G37690	GO:0000166,nucleotide binding; GO:0004638,phosphoribosylaminoimidazole carboxylase activity; GO:0005524,ATP binding; GO:0006164,purine nucleotide biosynthetic process; GO:0006189,'de novo' IMP biosynthetic process; GO:0009507,chloroplast; GO:0009555,pollen development; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0043727,5-amino-4-imidazole carboxylate lyase activity; GO:0046872,metal ion binding; 	ADE2; phosphoribosylaminoimidazole carboxylase [EC:4.1.1.21]; K11808; 	NP_181305.2 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase [Arabidopsis thaliana]
AT2G37880	-4.86155626464507	2.24235018623989	0.0301539005356062	1	Down	1.26	4.15	0.00	0.00	AT2G37880	GO:0010274,hydrotropism; 	--	NP_565873.1 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) [Arabidopsis thaliana]
AT2G37990	0.81394085681864	0.234880284457667	0.000529554719117097	0.00878225439926148	Up	46.03	45.20	83.57	79.33	AT2G37990	GO:0000055,ribosomal large subunit export from nucleus; GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; 	--	NP_565878.1 ribosome biogenesis regulatory protein (RRS1) family protein [Arabidopsis thaliana]
AT2G38010	-0.633541639243386	0.222511010209348	0.00441004808116511	0.0473650618587473	Down	35.16	36.15	24.40	22.25	AT2G38010	GO:0005576,extracellular region; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0017040,N-acylsphingosine amidohydrolase activity; GO:0042759,long-chain fatty acid biosynthetic process; GO:0046512,sphingosine biosynthetic process; GO:0046514,ceramide catabolic process; GO:0102121,ceramidase activity; 	ASAH2; neutral ceramidase [EC:3.5.1.23]; K12349; 	NP_973628.1 Neutral/alkaline non-lysosomal ceramidase [Arabidopsis thaliana]
AT2G38270	-0.854444705342009	0.325902755993513	0.00874723660797842	0.080377385275535	Down	53.13	42.63	24.49	29.51	AT2G38270	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005759,mitochondrial matrix; GO:0006812,cation transport; GO:0008152,metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; 	--	NP_565885.1 CAX-interacting protein 2 [Arabidopsis thaliana]
AT2G38290	-1.69461098812133	0.663798852491304	0.0106830672602528	0.0941217680138044	Down	8.70	8.66	3.54	1.82	AT2G38290	GO:0005886,plasma membrane; GO:0005887,integral component of plasma membrane; GO:0006812,cation transport; GO:0008519,ammonium transmembrane transporter activity; GO:0009506,plasmodesma; GO:0009624,response to nematode; GO:0015398,high-affinity secondary active ammonium transmembrane transporter activity; GO:0016020,membrane; GO:0071705,nitrogen compound transport; GO:0072488,ammonium transmembrane transport; 	--	NP_181363.1 ammonium transporter 2 [Arabidopsis thaliana]
AT2G38330	-2.21134799659909	0.791819539419399	0.0052263294352802	1	Down	5.83	7.07	1.94	0.83	AT2G38330	GO:0009507,chloroplast; GO:0009536,plastid; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0042908,xenobiotic transport; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_181367.2 MATE efflux family protein [Arabidopsis thaliana]
AT2G38860	-2.21942563610805	0.794928298918284	0.005238624287347	1	Down	7.63	8.39	1.69	1.81	AT2G38860	GO:0005794,Golgi apparatus; GO:0006541,glutamine metabolic process; 	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881; 	NP_850303.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]
AT2G38995	-1.09438270858519	0.380992989956057	0.00407304574498505	0.0446738571764275	Down	20.50	19.72	10.42	8.65	AT2G38995	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0008374,O-acyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019432,triglyceride biosynthetic process; GO:0045017,glycerolipid biosynthetic process; GO:0047196,long-chain-alcohol O-fatty-acyltransferase activity; GO:0102966,arachidoyl-CoA:1-dodecanol O-acyltransferase activity; 	--	NP_001324139.1 O-acyltransferase (WSD1-like) family protein [Arabidopsis thaliana]
AT2G39060	-1.00300401504801	0.278372248493385	0.000314440283387937	0.00566129421687571	Down	81.71	77.22	45.60	34.62	AT2G39060	GO:0005515,protein binding; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0008515,sucrose transmembrane transporter activity; GO:0008643,carbohydrate transport; GO:0012506,vesicle membrane; GO:0015770,sucrose transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0030659,cytoplasmic vesicle membrane; GO:0031410,cytoplasmic vesicle; GO:0032588,trans-Golgi network membrane; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; GO:0071836,nectar secretion; 	--	NP_181439.1 Nodulin MtN3 family protein [Arabidopsis thaliana]
AT2G39310	5.5714372666206	2.19857159013317	0.011273114014016	1	Up	0.00	0.00	0.98	2.21	AT2G39310	GO:0030246,carbohydrate binding; 	--	NP_001154564.1 jacalin-related lectin 22 [Arabidopsis thaliana]
AT2G39390	0.959027891241906	0.271556919055722	0.000413068167806462	0.00711682030783216	Up	81.88	110.06	211.36	166.76	AT2G39390	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005794,Golgi apparatus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L35e, RPL35; large subunit ribosomal protein L35e; K02918; 	NP_181471.1 Ribosomal L29 family protein [Arabidopsis thaliana]
AT2G39440	1.63474297338989	0.528184202616991	0.00196796733691813	0.0249873437200301	Up	13.42	10.01	39.33	34.60	AT2G39440	GO:0006401,RNA catabolic process; GO:0032299,ribonuclease H2 complex; 	RNASEH2C; ribonuclease H2 subunit C; K10745; 	NP_001323596.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana]
AT2G39460	0.741926647513239	0.110019149330105	1.54494923415387e-11	1.63804232903238e-09	Up	898.87	979.07	1698.85	1490.82	AT2G39460	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005794,Golgi apparatus; GO:0005840,ribosome; GO:0006412,translation; GO:0006979,response to oxidative stress; GO:0009409,response to cold; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009644,response to high light intensity; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae; K02893; 	NP_001154565.1 ribosomal protein L23AA [Arabidopsis thaliana]
AT2G39650	2.07599435508823	0.622418056964952	0.000851860516174015	0.012907584450561	Up	3.93	3.46	16.61	15.04	AT2G39650	--	--	NP_181495.1 cruciferin (DUF506) [Arabidopsis thaliana]
AT2G39850	-1.1464372389924	0.322706358049567	0.000381486099101722	0.00662792025120008	Down	18.42	24.45	11.02	8.57	AT2G39850	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity; 	--	NP_565915.2 Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]
AT2G39910	-1.14553702166057	0.580065833316274	0.0482863450392003	0.270792093223906	Down	10.54	9.62	4.63	4.63	AT2G39910	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_565917.2 ARM repeat superfamily protein [Arabidopsis thaliana]
AT2G39960	-0.775452103796519	0.283239143589443	0.00618516937544489	0.0616281334155774	Down	127.46	88.06	60.03	68.18	AT2G39960	GO:0003674,molecular_function; GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0008233,peptidase activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0045047,protein targeting to ER; 	SPCS2, SPC2; signal peptidase complex subunit 2 [EC:3.4.-.-]; K12947; 	NP_181525.2 Microsomal signal peptidase 25 kDa subunit (SPC25) [Arabidopsis thaliana]
AT2G40100	-0.996490450790129	0.170727242987846	5.32322092264717e-09	3.4214795619398e-07	Down	196.31	197.83	99.77	101.02	AT2G40100	GO:0005794,Golgi apparatus; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0046872,metal ion binding; 	LHCB4; light-harvesting complex II chlorophyll a/b binding protein 4; K08915; 	NP_181539.1 light harvesting complex photosystem II [Arabidopsis thaliana]
AT2G40110	-0.877590229793603	0.405429982266511	0.0304189945594538	0.201144790783595	Down	58.18	58.81	37.41	26.93	AT2G40110	GO:0000151,ubiquitin ligase complex; GO:0003674,molecular_function; GO:0046872,metal ion binding; 	--	NP_001324480.1 Yippee family putative zinc-binding protein [Arabidopsis thaliana]
AT2G40190	-0.848090733178516	0.398676291364505	0.0333979435744678	0.213777858638428	Down	20.03	19.24	9.21	13.09	AT2G40190	GO:0004377,GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0006487,protein N-linked glycosylation; GO:0006490,oligosaccharide-lipid intermediate biosynthetic process; GO:0006970,response to osmotic stress; GO:0009737,response to abscisic acid; GO:0009832,plant-type cell wall biogenesis; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0097502,mannosylation; 	ALG11; alpha-1,2-mannosyltransferase [EC:2.4.1.131]; K03844; 	NP_181548.2 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]
AT2G40205	0.7215958580247	0.219042226935169	0.000986590386510873	0.0145179759723219	Up	663.82	696.59	1155.11	1123.46	AT2G40205	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex; 	RP-L41e, RPL41; large subunit ribosomal protein L41e; K02928; 	--
AT2G40290	-0.940456642690576	0.190244432382637	7.67669426341296e-07	3.02315531230596e-05	Down	180.14	137.53	78.61	89.88	AT2G40290	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005634,nucleus; GO:0005794,Golgi apparatus; GO:0005850,eukaryotic translation initiation factor 2 complex; GO:0005851,eukaryotic translation initiation factor 2B complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0008150,biological_process; GO:0033290,eukaryotic 48S preinitiation complex; GO:0043022,ribosome binding; GO:0043614,multi-eIF complex; 	EIF2S1; translation initiation factor 2 subunit 1; K03237; 	NP_565927.1 Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana]
AT2G40360	1.05737232191804	0.151705868448317	3.17202173046411e-12	3.82028442392304e-10	Up	48.06	51.00	107.71	101.64	AT2G40360	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466,maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0007276,gamete generation; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; GO:0043021,ribonucleoprotein complex binding; GO:0051302,regulation of cell division; GO:0070545,PeBoW complex; 	--	NP_001324711.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT2G40370	1.12963221705396	0.534932532329013	0.0347097522074947	0.219233439986747	Up	6.05	2.95	8.91	11.20	AT2G40370	GO:0005507,copper ion binding; GO:0005576,extracellular region; GO:0016491,oxidoreductase activity; GO:0046274,lignin catabolic process; GO:0046688,response to copper ion; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0048226,Casparian strip; GO:0052716,hydroquinone:oxygen oxidoreductase activity; 	E1.10.3.2; laccase [EC:1.10.3.2]; K05909; 	NP_181568.1 laccase 5 [Arabidopsis thaliana]
AT2G40390	-3.1012597321489	1.3891495396491	0.0255827248626044	1	Down	4.40	1.73	0.68	0.00	AT2G40390	GO:0008150,biological_process; 	--	NP_181570.2 neuronal PAS domain protein [Arabidopsis thaliana]
AT2G40590	1.23296181886809	0.411200225061612	0.00271359917695845	0.032181833451405	Up	37.27	26.01	63.06	88.73	AT2G40590	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S26e, RPS26; small subunit ribosomal protein S26e; K02976; 	NP_181591.1 Ribosomal protein S26e family protein [Arabidopsis thaliana]
AT2G40600	1.09083643784296	0.475995614564376	0.0219232894317529	0.159693720141453	Up	12.11	10.98	27.47	22.42	AT2G40600	GO:0005794,Golgi apparatus; GO:0009507,chloroplast; 	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]; K23518; 	NP_030605.2 appr-1-p processing enzyme family protein [Arabidopsis thaliana]
AT2G40610	-0.718596080641357	0.160352469960879	7.41711863809977e-06	0.000231761603792513	Down	321.30	265.28	173.60	189.01	AT2G40610	GO:0005576,extracellular region; GO:0006949,syncytium formation; GO:0009635,response to herbicide; GO:0009653,anatomical structure morphogenesis; GO:0009664,plant-type cell wall organization; GO:0016020,membrane; GO:0071555,cell wall organization; 	--	NP_181593.1 expansin A8 [Arabidopsis thaliana]
AT2G40765	1.11019104438877	0.450263655268015	0.0136766201605304	0.113332313354295	Up	61.94	56.24	151.27	107.21	AT2G40765	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005750,mitochondrial respiratory chain complex III; GO:0005829,cytosol; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_565941.1 transmembrane protein [Arabidopsis thaliana]
AT2G40770	-0.981581523837287	0.498958706620452	0.0491532396703945	0.273674119439517	Down	3.94	3.09	1.96	1.65	AT2G40770	GO:0000166,nucleotide binding; GO:0003674,molecular_function; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0006338,chromatin remodeling; GO:0008150,biological_process; GO:0046872,metal ion binding; GO:0140658,ATP-dependent chromatin remodeler activity; 	--	NP_001318395.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]
AT2G41040	-1.01217707401259	0.251228457847875	5.6035848053979e-05	0.00136149676057535	Down	82.30	88.51	51.94	33.59	AT2G41040	GO:0006744,ubiquinone biosynthetic process; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; 	--	NP_181637.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT2G41380	-1.95605908358575	0.637902454269896	0.00216658947911419	0.0269574147326094	Down	18.51	18.44	2.92	6.96	AT2G41380	GO:0005739,mitochondrion; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; 	--	NP_181669.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT2G41650	0.853026043424622	0.191755068671906	8.64644498682047e-06	0.00026615173712533	Up	359.01	338.22	607.74	673.38	AT2G41650	GO:0008150,biological_process; GO:0009507,chloroplast; 	--	NP_181696.1 hypothetical protein AT2G41650 [Arabidopsis thaliana]
AT2G41760	1.94227178478591	0.919487570786474	0.0346571659171982	1	Up	1.76	3.09	9.12	9.77	AT2G41760	GO:0005634,nucleus; GO:0005829,cytosol; GO:0006952,defense response; GO:0008418,protein-N-terminal asparagine amidohydrolase activity; GO:0016787,hydrolase activity; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0042742,defense response to bacterium; GO:0070773,protein-N-terminal glutamine amidohydrolase activity; GO:1901183,positive regulation of camalexin biosynthetic process; 	NTAQ1; protein N-terminal glutamine amidohydrolase [EC:3.5.1.122]; K21286; 	NP_565959.1 amino-terminal glutamine amidohydrolase [Arabidopsis thaliana]
AT2G41980	-1.67859715231997	0.816715077471429	0.0398497237029574	1	Down	9.70	7.29	2.57	2.84	AT2G41980	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005771,multivesicular body; GO:0005776,autophagosome; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0007275,multicellular organism development; GO:0008270,zinc ion binding; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031410,cytoplasmic vesicle; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:2000785,regulation of autophagosome assembly; 	SIAH1; E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27]; K04506; 	NP_181729.1 Protein with RING/U-box and TRAF-like domain [Arabidopsis thaliana]
AT2G42220	-0.886489972126179	0.281097888849985	0.00161231304874433	0.0213806693868708	Down	83.41	79.99	39.73	50.46	AT2G42220	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0016020,membrane; 	--	NP_565969.1 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]
AT2G42490	0.683384436005464	0.191299867256793	0.000353832012733415	0.00624365023891609	Up	30.86	32.81	53.56	50.25	AT2G42490	GO:0002237,response to molecule of bacterial origin; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0008131,primary amine oxidase activity; GO:0009308,amine metabolic process; GO:0009447,putrescine catabolic process; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0009753,response to jasmonic acid; GO:0010311,lateral root formation; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0048038,quinone binding; GO:0052593,tryptamine:oxygen oxidoreductase (deaminating) activity; GO:0052594,aminoacetone:oxygen oxidoreductase(deaminating) activity; GO:0052595,aliphatic amine oxidase activity; GO:0052596,phenethylamine:oxygen oxidoreductase (deaminating) activity; 	AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21]; K00276; 	NP_181777.2 Copper amine oxidase family protein [Arabidopsis thaliana]
AT2G42590	-0.599055521190611	0.149920008228379	6.44667965555952e-05	0.00151853853346034	Down	287.67	348.90	215.25	211.70	AT2G42590	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0048528,post-embryonic root development; 	YWHAE; 14-3-3 protein epsilon; K06630; 	NP_565977.1 general regulatory factor 9 [Arabidopsis thaliana]
AT2G42865	-4.67369693858275	2.33962005892259	0.0457567085463932	1	Down	2.82	11.38	0.00	0.00	AT2G42865	--	--	NP_001324793.1 hypothetical protein AT2G42865 [Arabidopsis thaliana]
AT2G42940	-2.38146735066415	0.712242310486457	0.000826930403783358	1	Down	14.83	18.30	2.62	3.92	AT2G42940	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010208,pollen wall assembly; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0010529,negative regulation of transposition; GO:0031490,chromatin DNA binding; GO:0035067,negative regulation of histone acetylation; GO:1900111,positive regulation of histone H3-K9 dimethylation; 	--	NP_181822.1 Putative AT-hook DNA-binding family protein [Arabidopsis thaliana]
AT2G42990	-0.695137032881729	0.253349143076687	0.00607342397943497	0.0606608892631971	Down	60.30	70.43	38.14	44.08	AT2G42990	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_181827.2 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]
AT2G43010	1.1284930356538	0.335899456586947	0.000780510054289219	0.0120726025230147	Up	11.64	13.51	26.55	29.34	AT2G43010	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009585,red, far-red light phototransduction; GO:0009638,phototropism; GO:0009704,de-etiolation; GO:0010017,red or far-red light signaling pathway; GO:0010161,red light signaling pathway; GO:0010244,response to low fluence blue light stimulus by blue low-fluence system; GO:0010600,regulation of auxin biosynthetic process; GO:0010928,regulation of auxin mediated signaling pathway; GO:0046983,protein dimerization activity; GO:1990841,promoter-specific chromatin binding; 	PIF4; phytochrome-interacting factor 4; K16189; 	NP_001323428.1 phytochrome interacting factor 4 [Arabidopsis thaliana]
AT2G43030	-0.968678798888802	0.205652298086314	2.47383238329516e-06	8.81835940079782e-05	Down	139.54	147.37	69.06	80.28	AT2G43030	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L3, MRPL3, rplC; large subunit ribosomal protein L3; K02906; 	NP_181831.1 Ribosomal protein L3 family protein [Arabidopsis thaliana]
AT2G43100	2.63004677695409	1.29226272328869	0.0418281315672645	1	Up	0.30	1.34	3.50	6.75	AT2G43100	GO:0003861,3-isopropylmalate dehydratase activity; GO:0008652,cellular amino acid biosynthetic process; GO:0009082,branched-chain amino acid biosynthetic process; GO:0009098,leucine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0019761,glucosinolate biosynthetic process; GO:0043436,oxoacid metabolic process; 	MAM-IS, IPMI2; 3-isopropylmalate/methylthioalkylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.170]; K21359; 	NP_181838.1 isopropylmalate isomerase 2 [Arabidopsis thaliana]
AT2G43190	1.37930650730148	0.584864565085003	0.0183571241585726	0.140828772533762	Up	5.78	6.07	18.56	12.66	AT2G43190	GO:0000172,ribonuclease MRP complex; GO:0001682,tRNA 5'-leader removal; GO:0003723,RNA binding; GO:0004526,ribonuclease P activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008033,tRNA processing; GO:0030677,ribonuclease P complex; GO:0033204,ribonuclease P RNA binding; GO:0034470,ncRNA processing; GO:0090501,RNA phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; 	POP4, RPP29; ribonuclease P protein subunit POP4 [EC:3.1.26.5]; K03538; 	NP_001324792.1 ribonuclease P family protein [Arabidopsis thaliana]
AT2G43540	1.84090280934163	0.873496869034896	0.0350734530077614	1	Up	5.05	2.52	16.54	11.06	AT2G43540	GO:0016020,membrane; 	--	NP_566001.1 transmembrane protein [Arabidopsis thaliana]
AT2G43560	-1.17756482913637	0.389642615458501	0.00250972526091873	0.030197033813479	Down	42.88	49.43	22.60	18.72	AT2G43560	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016853,isomerase activity; GO:0031977,thylakoid lumen; 	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802; 	NP_181884.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT2G43620	-1.23314658240302	0.527389707285087	0.0193764853209623	0.146207603653611	Down	17.05	22.97	9.11	8.15	AT2G43620	GO:0000272,polysaccharide catabolic process; GO:0004568,chitinase activity; GO:0005975,carbohydrate metabolic process; GO:0006032,chitin catabolic process; GO:0006952,defense response; GO:0008061,chitin binding; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016998,cell wall macromolecule catabolic process; GO:0048046,apoplast; GO:0099503,secretory vesicle; 	E3.2.1.14; chitinase [EC:3.2.1.14]; K01183; 	NP_181890.1 Chitinase family protein [Arabidopsis thaliana]
AT2G43640	1.0919649650229	0.516780604546137	0.0345995178387082	0.219094955992432	Up	18.56	23.92	52.55	39.11	AT2G43640	GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0005786,signal recognition particle, endoplasmic reticulum targeting; GO:0005829,cytosol; GO:0006614,SRP-dependent cotranslational protein targeting to membrane; GO:0008312,7S RNA binding; GO:0030942,endoplasmic reticulum signal peptide binding; GO:0045047,protein targeting to ER; GO:0048500,signal recognition particle; GO:1990904,ribonucleoprotein complex; 	SRP14; signal recognition particle subunit SRP14; K03104; 	NP_001189744.1 Signal recognition particle, SRP9/SRP14 subunit [Arabidopsis thaliana]
AT2G43650	0.975316286302781	0.265983201305968	0.000245571953114964	0.00462966577263089	Up	15.02	19.66	35.20	34.00	AT2G43650	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006325,chromatin organization; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:1990904,ribonucleoprotein complex; 	--	NP_850397.1 Sas10/U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]
AT2G44080	0.911891584051847	0.407582554635232	0.0252655959511131	0.176973301961354	Up	44.22	29.66	83.53	57.42	AT2G44080	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009725,response to hormone; GO:0009741,response to brassinosteroid; GO:0009825,multidimensional cell growth; GO:0016020,membrane; GO:0035265,organ growth; GO:0046622,positive regulation of organ growth; 	--	NP_850409.1 ARGOS-like protein [Arabidopsis thaliana]
AT2G44120	0.887023872737368	0.132169363934353	1.92941869457069e-11	1.97805280216111e-09	Up	238.38	240.89	472.61	427.40	AT2G44120	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L7e, RPL7; large subunit ribosomal protein L7e; K02937; 	NP_850410.1 Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]
AT2G44140	1.15777063862314	0.339176781707139	0.000641406164076206	0.0103199007332884	Up	14.58	12.11	35.47	24.90	AT2G44140	GO:0004175,endopeptidase activity; GO:0005575,cellular_component; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0006914,autophagy; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0019786,Atg8-specific peptidase activity; 	ATG4; cysteine protease ATG4 [EC:3.4.22.-]; K08342; 	NP_001324765.1 Peptidase family C54 protein [Arabidopsis thaliana]
AT2G44270	1.06276880906527	0.370613190525895	0.00413603633878951	0.0452447361399329	Up	12.94	18.32	29.07	37.37	AT2G44270	GO:0000049,tRNA binding; GO:0002098,tRNA wobble uridine modification; GO:0002143,tRNA wobble position uridine thiolation; GO:0002144,cytosolic tRNA wobble base thiouridylase complex; GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0008033,tRNA processing; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0032447,protein urmylation; GO:0034227,tRNA thio-modification; 	CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]; K14168; 	NP_181956.2 repressor of lrx1 [Arabidopsis thaliana]
AT2G44360	1.72395308289771	0.608756578876624	0.00462686741393767	0.0490566583503392	Up	9.76	10.10	30.60	36.15	AT2G44360	GO:0005575,cellular_component; 	--	NP_181964.1 ecotropic viral integration site protein [Arabidopsis thaliana]
AT2G45000	1.08057121444653	0.352464825311325	0.00217120293310894	0.0269604388916531	Up	7.60	7.19	15.96	15.83	AT2G45000	GO:0005515,protein binding; GO:0005543,phospholipid binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005643,nuclear pore; GO:0005829,cytosol; GO:0006405,RNA export from nucleus; GO:0006606,protein import into nucleus; GO:0010930,negative regulation of auxin mediated signaling pathway; GO:0015031,protein transport; GO:0017056,structural constituent of nuclear pore; GO:0034399,nuclear periphery; GO:0044613,nuclear pore central transport channel; GO:0051028,mRNA transport; 	NUP62, NSP1; nuclear pore complex protein Nup62; K14306; 	NP_850429.1 structural constituent of nuclear pore [Arabidopsis thaliana]
AT2G45200	0.712642741426651	0.26909484508249	0.00808987116393543	0.0758609804064849	Up	55.39	51.57	106.38	71.18	AT2G45200	GO:0000139,Golgi membrane; GO:0000325,plant-type vacuole; GO:0005484,SNAP receptor activity; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005801,cis-Golgi network; GO:0005802,trans-Golgi network; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006906,vesicle fusion; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0031201,SNARE complex; GO:0110165,cellular anatomical entity; 	GOSR1, GOS1; golgi SNAP receptor complex member 1; K08495; 	NP_182045.1 golgi snare 12 [Arabidopsis thaliana]
AT2G45220	1.34755333330363	0.397532168728035	0.000699444098059073	0.0109969632907767	Up	7.17	13.75	21.09	33.04	AT2G45220	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0009617,response to bacterium; GO:0009620,response to fungus; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0050829,defense response to Gram-negative bacterium; GO:0071555,cell wall organization; 	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051; 	NP_566038.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]
AT2G45520	0.890909220936706	0.383034105719241	0.020022465918674	0.149871438645669	Up	27.30	22.50	50.23	43.52	AT2G45520	GO:0008150,biological_process; 	--	NP_566044.1 coiled-coil protein [Arabidopsis thaliana]
AT2G45710	0.973889604710634	0.245529640976908	7.29404052677161e-05	0.00169443020102251	Up	145.17	154.50	280.54	318.13	AT2G45710	GO:0000028,ribosomal small subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S27e, RPS27; small subunit ribosomal protein S27e; K02978; 	NP_182095.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT2G45860	1.23714606473898	0.403365482573798	0.00216175589867254	0.0269509222900184	Up	59.55	43.99	109.67	139.18	AT2G45860	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_182110.1 hypothetical protein AT2G45860 [Arabidopsis thaliana]
AT2G45930	3.48740571554727	1.7473782342478	0.0459564299472478	1	Up	0.00	0.72	1.41	6.63	AT2G45930	--	--	NP_566057.1 hypothetical protein AT2G45930 [Arabidopsis thaliana]
AT2G46140	-1.19866462123121	0.345020946470687	0.000512418548580477	0.00857834290842216	Down	87.45	76.58	41.09	31.17	AT2G46140	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009269,response to desiccation; 	--	NP_182137.1 Late embryogenesis abundant protein [Arabidopsis thaliana]
AT2G46200	1.35209363445481	0.656180555494725	0.0393458759784257	0.237974447348791	Up	5.01	2.87	7.22	13.37	AT2G46200	GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:1990904,ribonucleoprotein complex; 	--	NP_850448.1 U11/U12 small nuclear ribonucleoprotein [Arabidopsis thaliana]
AT2G46280	0.731841008051299	0.158574221882566	3.9284504750563e-06	0.000133513501761845	Up	109.94	111.64	185.46	188.50	AT2G46280	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	EIF3I; translation initiation factor 3 subunit I; K03246; 	NP_182151.1 TGF-beta receptor interacting protein 1 [Arabidopsis thaliana]
AT2G46290	0.798849668242119	0.363886604065008	0.028140231914177	0.191381346982109	Up	16.67	15.91	30.33	27.21	AT2G46290	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0003723,RNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0009506,plasmodesma; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0071541,eukaryotic translation initiation factor 3 complex, eIF3m; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	EIF3I; translation initiation factor 3 subunit I; K03246; 	NP_182152.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT2G46600	0.663893355253928	0.227570482965491	0.00353066123246278	0.0396719679245478	Up	223.95	240.46	276.24	473.15	AT2G46600	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0010091,trichome branching; GO:0046872,metal ion binding; 	--	NP_566082.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]
AT2G46650	1.84765342522882	0.493305857153973	0.000180069251984736	0.00351773082026875	Up	13.51	16.13	54.97	53.28	AT2G46650	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0016020,membrane; GO:0020037,heme binding; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; 	CYB5; cytochrome b5; K23490; 	NP_182188.1 cytochrome B5 isoform C [Arabidopsis thaliana]
AT2G46700	1.36323933633344	0.472831996548315	0.00393736389575357	0.0433774414980667	Up	4.72	5.33	9.63	16.74	AT2G46700	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004683,calmodulin-dependent protein kinase activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0009931,calcium-dependent protein serine/threonine kinase activity; GO:0010150,leaf senescence; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0035556,intracellular signal transduction; GO:0046777,protein autophosphorylation; GO:0046872,metal ion binding; GO:0071215,cellular response to abscisic acid stimulus; GO:0106310,protein serine kinase activity; 	--	NP_182193.1 CDPK-related kinase 3 [Arabidopsis thaliana]
AT2G46820	-0.805348293042894	0.138723567877157	6.42056353219655e-09	3.92350200083242e-07	Down	551.14	594.47	349.66	315.65	AT2G46820	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009515,granal stacked thylakoid; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0019904,protein domain specific binding; GO:0030093,chloroplast photosystem I; GO:0042644,chloroplast nucleoid; GO:0090391,granum assembly; GO:0097753,membrane bending; 	--	NP_001031551.1 photosystem I P subunit [Arabidopsis thaliana]
AT2G46910	-1.26502526497249	0.373901773985013	0.000716179842452735	0.0112174380626593	Down	36.72	45.78	18.55	16.24	AT2G46910	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; 	--	NP_566091.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]
AT2G47110	1.04538051732193	0.11025448862432	2.50597362946487e-21	1.07195182322454e-18	Up	623.78	581.29	1291.41	1235.54	AT2G47110	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0022627,cytosolic small ribosomal subunit; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S27Ae, RPS27A, UBA80; ubiquitin-small subunit ribosomal protein S27Ae; K02977; 	XP_010506742.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-2 [Camelina sativa]
AT2G47340	-0.751948621571285	0.296277032124271	0.0111490657443054	0.0973972961676821	Down	64.30	52.17	36.96	33.21	AT2G47340	GO:0004857,enzyme inhibitor activity; GO:0030599,pectinesterase activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; 	--	NP_182256.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT2G47380	0.78724627735146	0.349471380149563	0.0242794974088266	0.172008660968871	Up	104.53	96.40	157.48	195.77	AT2G47380	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005746,mitochondrial respirasome; GO:0016020,membrane; 	--	NP_001324866.1 Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]
AT2G47610	0.698707054052899	0.139401819890116	5.38167442515762e-07	2.19604181723948e-05	Up	219.76	209.93	371.89	336.29	AT2G47610	GO:0000325,plant-type vacuole; GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042254,ribosome biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae; K02936; 	NP_182283.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]
AT2G47730	-0.885878890929217	0.214219404303422	3.54365947904912e-05	0.00091201443646482	Down	136.37	123.55	75.84	66.82	AT2G47730	GO:0000325,plant-type vacuole; GO:0004364,glutathione transferase activity; GO:0004601,peroxidase activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006952,defense response; GO:0009407,toxin catabolic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009636,response to toxic substance; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016491,oxidoreductase activity; GO:0016740,transferase activity; GO:0042221,response to chemical; GO:0043295,glutathione binding; GO:0071456,cellular response to hypoxia; GO:0098869,cellular oxidant detoxification; GO:1901149,salicylic acid binding; 	GST, gst; glutathione S-transferase [EC:2.5.1.18]; K00799; 	NP_001323480.1 glutathione S-transferase phi 8 [Arabidopsis thaliana]
AT2G47780	2.01991849549755	0.957503964324843	0.0348956936125762	1	Up	1.65	2.55	5.72	11.64	AT2G47780	GO:0005811,lipid droplet; GO:0034389,lipid droplet organization; GO:0045927,positive regulation of growth; GO:0080186,developmental vegetative growth; GO:1902584,positive regulation of response to water deprivation; 	--	NP_182299.1 Rubber elongation factor protein (REF) [Arabidopsis thaliana]
AT2G47890	0.783391828824439	0.346520685693749	0.0237756026661071	0.169643842081348	Up	17.72	18.77	34.87	28.81	AT2G47890	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0008270,zinc ion binding; GO:0009416,response to light stimulus; GO:0009637,response to blue light; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0046872,metal ion binding; 	--	NP_182310.1 B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]
AT2G48120	-1.1535375469826	0.409420386176902	0.00484007311443231	0.0505396523438828	Down	28.60	28.98	12.54	13.82	AT2G48120	GO:0003723,RNA binding; GO:0006397,mRNA processing; GO:0009501,amyloplast; GO:0009507,chloroplast; GO:0009509,chromoplast; GO:0009513,etioplast; GO:0009536,plastid; GO:0009537,proplastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0009965,leaf morphogenesis; GO:0010239,chloroplast mRNA processing; GO:0016070,RNA metabolic process; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis; GO:0042644,chloroplast nucleoid; GO:0043621,protein self-association; GO:0048366,leaf development; GO:0071482,cellular response to light stimulus; 	--	NP_182332.1 pale cress protein (PAC) [Arabidopsis thaliana]
AT2G48150	-0.609735490648355	0.297715543490289	0.0405553729608609	0.24297498167387	Down	176.74	109.43	73.02	118.39	AT2G48150	GO:0004601,peroxidase activity; GO:0004602,glutathione peroxidase activity; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0012505,endomembrane system; GO:0016491,oxidoreductase activity; GO:0098869,cellular oxidant detoxification; GO:0110165,cellular anatomical entity; 	gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9]; K00432; 	NP_566128.1 glutathione peroxidase 4 [Arabidopsis thaliana]
AT3G01060	-0.832983305294389	0.247773388055666	0.000774149941968699	0.0119891760675677	Down	52.41	50.82	29.11	29.81	AT3G01060	GO:0003674,molecular_function; GO:0007623,circadian rhythm; GO:0016874,ligase activity; 	--	NP_566129.1 lysine-tRNA ligase [Arabidopsis thaliana]
AT3G01150	0.587723009813515	0.270495341394751	0.0297979532956599	0.19937627326465	Up	30.78	27.70	43.77	45.59	AT3G01150	GO:0000381,regulation of alternative mRNA splicing, via spliceosome; GO:0000932,P-body; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0008380,RNA splicing; GO:0009845,seed germination; GO:0043484,regulation of RNA splicing; 	--	NP_001319439.1 polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
AT3G01324	-4.7661981464419	2.28073212670432	0.0366387582460008	1	Down	3.03	9.17	0.00	0.00	AT3G01324	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001078086.1 ECA1-like gametogenesis related family protein [Arabidopsis thaliana]
AT3G01420	1.2028404778654	0.284491914338084	2.35745888272185e-05	0.000649872832003656	Up	13.18	12.34	29.88	29.82	AT3G01420	GO:0001561,fatty acid alpha-oxidation; GO:0004601,peroxidase activity; GO:0005811,lipid droplet; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0006952,defense response; GO:0006979,response to oxidative stress; GO:0008219,cell death; GO:0009626,plant-type hypersensitive response; GO:0009627,systemic acquired resistance; GO:0009737,response to abscisic acid; GO:0009751,response to salicylic acid; GO:0012511,monolayer-surrounded lipid storage body; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0020037,heme binding; GO:0031408,oxylipin biosynthetic process; GO:0034614,cellular response to reactive oxygen species; GO:0042742,defense response to bacterium; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; GO:0051213,dioxygenase activity; GO:0071446,cellular response to salicylic acid stimulus; GO:0071732,cellular response to nitric oxide; GO:0098869,cellular oxidant detoxification; GO:1902609,(R)-2-hydroxy-alpha-linolenic acid biosynthetic process; 	DOX; alpha-dioxygenase [EC:1.14.99.-]; K10529; 	NP_186791.1 Peroxidase superfamily protein [Arabidopsis thaliana]
AT3G01480	-0.788164659427164	0.23570066591373	0.000826029364631129	0.012619327916563	Down	54.98	62.12	34.04	34.88	AT3G01480	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0010102,lateral root morphogenesis; GO:0010207,photosystem II assembly; GO:0016853,isomerase activity; GO:0031977,thylakoid lumen; GO:0042549,photosystem II stabilization; 	--	NP_186797.1 cyclophilin 38 [Arabidopsis thaliana]
AT3G01510	0.915141425719769	0.302604484978515	0.00249278118580932	0.0300806912548294	Up	16.89	12.76	30.40	26.38	AT3G01510	GO:0004721,phosphoprotein phosphatase activity; GO:0005515,protein binding; GO:0005975,carbohydrate metabolic process; GO:0005983,starch catabolic process; GO:0006073,cellular glucan metabolic process; GO:0006470,protein dephosphorylation; GO:0008138,protein tyrosine/serine/threonine phosphatase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009569,chloroplast starch grain; GO:0009570,chloroplast stroma; GO:0016311,dephosphorylation; GO:0016787,hydrolase activity; GO:0019203,carbohydrate phosphatase activity; GO:0043036,starch grain; GO:0046838,phosphorylated carbohydrate dephosphorylation; 	--	NP_566139.1 like SEX4 1 [Arabidopsis thaliana]
AT3G01530	1.43512846865807	0.5089492859756	0.00480555689305486	0.050348761197927	Up	10.19	12.03	25.54	35.63	AT3G01530	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0043565,sequence-specific DNA binding; GO:0048443,stamen development; GO:0080086,stamen filament development; GO:1990841,promoter-specific chromatin binding; 	--	NP_186802.1 myb domain protein 57 [Arabidopsis thaliana]
AT3G01540	0.720637161479971	0.223464375928658	0.00126042492519345	0.0175377839868612	Up	33.38	31.70	62.77	45.95	AT3G01540	GO:0000166,nucleotide binding; GO:0000184,nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]; K12823; 	NP_001030619.1 DEAD box RNA helicase 1 [Arabidopsis thaliana]
AT3G01550	-4.91842833624632	1.6991683971042	0.00379630937512773	1	Down	5.29	4.47	0.29	0.00	AT3G01550	GO:0005794,Golgi apparatus; GO:0008643,carbohydrate transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015120,phosphoglycerate transmembrane transporter activity; GO:0015121,phosphoenolpyruvate:phosphate antiporter activity; GO:0015297,antiporter activity; GO:0015605,organophosphate ester transmembrane transporter activity; GO:0015713,phosphoglycerate transmembrane transport; GO:0015714,phosphoenolpyruvate transport; GO:0015748,organophosphate ester transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport; GO:0089722,phosphoenolpyruvate transmembrane transport; 	--	NP_566142.1 phosphoenolpyruvate (pep)/phosphate translocator 2 [Arabidopsis thaliana]
AT3G01600	5.2980092293068	1.28057146707662	3.51535024261142e-05	1	Up	0.43	0.00	10.11	7.49	AT3G01600	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; 	--	NP_001319443.1 NAC domain containing protein 44 [Arabidopsis thaliana]
AT3G01920	-1.32876012173143	0.60778093939081	0.0287974351493564	0.194757368008192	Down	15.62	11.02	6.38	4.32	AT3G01920	GO:0003725,double-stranded RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0008150,biological_process; 	--	NP_566156.2 DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]
AT3G02010	-3.33543796612117	0.390334059731138	1.2844099915083e-17	4.08541178068218e-15	Down	21.94	30.76	3.13	2.10	AT3G02010	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle; 	--	NP_186850.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]
AT3G02030	-0.830825646683332	0.274678902557248	0.00248866768719001	0.0300806912548294	Down	32.55	27.15	18.21	15.83	AT3G02030	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0008374,O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0044249,cellular biosynthetic process; GO:1901576,organic substance biosynthetic process; 	--	NP_186852.4 transferase [Arabidopsis thaliana]
AT3G02050	-0.861216695066318	0.325143841852765	0.00807959933878967	0.0758609804064849	Down	17.60	21.51	8.83	13.18	AT3G02050	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006813,potassium ion transport; GO:0009932,cell tip growth; GO:0015079,potassium ion transmembrane transporter activity; GO:0016020,membrane; GO:0071805,potassium ion transmembrane transport; 	--	NP_186854.1 K+ uptake transporter 3 [Arabidopsis thaliana]
AT3G02190	1.12016937250036	0.298967799873166	0.000179112364533229	0.00350455659626925	Up	163.70	138.66	315.82	353.17	AT3G02190	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L39e, RPL39; large subunit ribosomal protein L39e; K02924; 	NP_566167.1 Ribosomal protein L39 family protein [Arabidopsis thaliana]
AT3G02220	0.815614183409087	0.301252411204061	0.00678101877988398	0.0662350692633549	Up	51.38	41.41	100.15	65.33	AT3G02220	GO:0008150,biological_process; 	--	NP_186871.1 small acidic-like protein [Arabidopsis thaliana]
AT3G02480	-0.871175644014791	0.322078826771163	0.00683347730615224	0.0666887956561082	Down	205.99	191.57	105.96	115.26	AT3G02480	GO:0005829,cytosol; GO:0009414,response to water deprivation; 	--	NP_566173.1 Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]
AT3G02560	0.741486816437055	0.158873146912298	3.05387587154918e-06	0.000106413848838673	Up	195.24	217.72	340.96	360.76	AT3G02560	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0009507,chloroplast; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0032040,small-subunit processome; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex; 	RP-S7e, RPS7; small subunit ribosomal protein S7e; K02993; 	NP_001319452.1 Ribosomal protein S7e family protein [Arabidopsis thaliana]
AT3G02580	-0.731838332662746	0.359594228523463	0.0418329463205597	0.246526222853465	Down	39.33	34.70	22.74	22.56	AT3G02580	GO:0000248,C-5 sterol desaturase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0008610,lipid biosynthetic process; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016132,brassinosteroid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0050046,delta7-sterol 5(6)-desaturase activity; 	SC5DL, ERG3; Delta7-sterol 5-desaturase [EC:1.14.19.20]; K00227; 	NP_186907.1 sterol 1 [Arabidopsis thaliana]
AT3G02640	-0.877457501734228	0.201309013650093	1.30801978534596e-05	0.000384502024578592	Down	223.37	197.51	115.51	117.39	AT3G02640	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_566178.1 transmembrane protein [Arabidopsis thaliana]
AT3G02720	-0.684749619744662	0.29680463349212	0.0210508140407487	0.155052881406603	Down	42.36	41.04	22.84	30.11	AT3G02720	GO:0004462,lactoylglutathione lyase activity; GO:0005829,cytosol; GO:0016829,lyase activity; GO:0019172,glyoxalase III activity; GO:0019249,lactate biosynthetic process; GO:0061727,methylglyoxal catabolic process to lactate; 	DJ1D; D-lactate dehydratase [EC:4.2.1.130]; K18881; 	NP_186921.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]
AT3G02910	1.01438832958663	0.388193641355008	0.00897253658113972	0.0820223406698881	Up	22.02	32.42	50.26	61.53	AT3G02910	GO:0005829,cytosol; GO:0008150,biological_process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0061929,gamma-glutamylaminecyclotransferase activity; 	GGACT; gamma-glutamylaminecyclotransferase [EC:2.3.2.-]; K19761; 	NP_566187.1 AIG2-like (avirulence induced gene) family protein [Arabidopsis thaliana]
AT3G03160	-0.833979869530479	0.348745420415297	0.0167855572995659	0.132458548537605	Down	81.67	108.11	59.25	48.57	AT3G03160	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006886,intracellular protein transport; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016192,vesicle-mediated transport; GO:0070973,protein localization to endoplasmic reticulum exit site; 	--	NP_566195.1 B-cell receptor-associated-like protein [Arabidopsis thaliana]
AT3G03270	-0.891452776021191	0.352361320462196	0.0114082239315183	0.0992419480157674	Down	55.65	53.99	36.12	23.54	AT3G03270	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0016787,hydrolase activity; GO:0043621,protein self-association; GO:0071456,cellular response to hypoxia; 	--	NP_850506.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]
AT3G03340	1.55539552905405	0.244984589542823	2.16785911880753e-10	1.79281949125383e-08	Up	22.68	18.74	57.89	66.03	AT3G03340	GO:0003729,mRNA binding; GO:0005685,U1 snRNP; GO:0006376,mRNA splice site selection; GO:0009567,double fertilization forming a zygote and endosperm; GO:0071004,U2-type prespliceosome; 	--	NP_001327217.1 LUC7 related protein [Arabidopsis thaliana]
AT3G03620	-1.33055007025144	0.546420289262795	0.0148905345069112	0.120730118011917	Down	25.72	8.40	4.94	8.95	AT3G03620	GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane; 	--	NP_001327451.1 MATE efflux family protein [Arabidopsis thaliana]
AT3G03760	-1.3798130850475	0.486771280446744	0.00458797872899325	0.0487693882889128	Down	28.50	30.39	6.98	16.36	AT3G03760	GO:0005634,nucleus; GO:0009753,response to jasmonic acid; GO:0009755,hormone-mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0045893,positive regulation of DNA-templated transcription; GO:1900150,regulation of defense response to fungus; 	--	NP_187026.1 LOB domain-containing protein 20 [Arabidopsis thaliana]
AT3G03780	-0.631118161626552	0.108681294867076	6.35815875799042e-09	3.90460195014214e-07	Down	248.46	267.59	172.54	165.94	AT3G03780	GO:0003729,mRNA binding; GO:0003871,5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008168,methyltransferase activity; GO:0008172,S-methyltransferase activity; GO:0008270,zinc ion binding; GO:0008652,cellular amino acid biosynthetic process; GO:0008705,methionine synthase activity; GO:0009086,methionine biosynthetic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0032259,methylation; GO:0046872,metal ion binding; GO:0048046,apoplast; 	metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]; K00549; 	NP_001118564.1 methionine synthase 2 [Arabidopsis thaliana]
AT3G03820	-4.01774807382107	1.92195049435158	0.0365770842908585	1	Down	6.44	14.16	1.16	0.00	AT3G03820	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0009266,response to temperature stimulus; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0016020,membrane; 	SAUR; SAUR family protein; K14488; 	NP_001319462.1 SAUR-like auxin-responsive protein family [Arabidopsis thaliana]
AT3G03890	-0.691511908568099	0.323250389712544	0.0324157992529581	0.209758077938489	Down	49.51	36.90	29.22	25.04	AT3G03890	GO:0009507,chloroplast; GO:0020037,heme binding; GO:0042167,heme catabolic process; GO:0042803,protein homodimerization activity; 	--	NP_566216.1 FMN binding protein [Arabidopsis thaliana]
AT3G03920	0.640156264113238	0.153930284029449	3.20005755382762e-05	0.000846411811412189	Up	219.29	224.52	330.24	373.26	AT3G03920	GO:0000454,snoRNA guided rRNA pseudouridine synthesis; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009535,chloroplast thylakoid membrane; GO:0031429,box H/ACA snoRNP complex; GO:0034513,box H/ACA snoRNA binding; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	GAR1, NOLA1; H/ACA ribonucleoprotein complex subunit 1; K11128; 	NP_566217.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein [Arabidopsis thaliana]
AT3G04020	1.99930952792034	0.757330513826803	0.00829199272208741	1	Up	2.30	2.81	12.13	8.51	AT3G04020	GO:0003674,molecular_function; 	--	NP_001326032.1 hypothetical protein AT3G04020 [Arabidopsis thaliana]
AT3G04400	0.674186359609405	0.0895376231982961	5.08791424218236e-14	8.7660522464267e-12	Up	2389.98	2222.58	3623.37	3856.11	AT3G04400	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005576,extracellular region; GO:0005730,nucleolus; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L23e, RPL23; large subunit ribosomal protein L23e; K02894; 	NP_180895.1 Ribosomal protein L14p/L23e family protein [Arabidopsis thaliana]
AT3G04600	1.04985645945088	0.252865810651212	3.29823809937243e-05	0.000861360918372947	Up	27.62	39.70	73.44	67.95	AT3G04600	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004830,tryptophan-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006436,tryptophanyl-tRNA aminoacylation; GO:0009791,post-embryonic development; GO:0016740,transferase activity; GO:0016874,ligase activity; GO:0048608,reproductive structure development; 	WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]; K01867; 	NP_001078104.1 Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]
AT3G04620	-1.12725962740075	0.418392228396861	0.00705440071601182	0.068260406304311	Down	50.17	54.10	23.18	25.42	AT3G04620	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0048235,pollen sperm cell differentiation; 	--	NP_187113.1 Alba DNA/RNA-binding protein [Arabidopsis thaliana]
AT3G04750	-1.35802449630813	0.634358581576877	0.0322914869498588	0.209187951889742	Down	4.84	9.08	1.87	3.71	AT3G04750	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0005739,mitochondrion; GO:0008150,biological_process; 	--	NP_187126.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
AT3G04890	-1.10531040574343	0.55944027683567	0.0481838526485208	0.27058428796057	Down	22.37	17.57	11.05	7.69	AT3G04890	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016757,glycosyltransferase activity; 	--	NP_566242.1 adenine phosphoribosyltransferase-like protein, putative (DUF2358) [Arabidopsis thaliana]
AT3G05020	-0.805361662089905	0.275628551626027	0.00347892697697481	0.0392296961876099	Down	153.93	139.95	97.81	72.30	AT3G05020	GO:0000036,acyl carrier activity; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; 	--	NP_187153.1 acyl carrier protein 1 [Arabidopsis thaliana]
AT3G05060	0.899736993511802	0.153768457358604	4.87905432766556e-09	3.16883083427703e-07	Up	70.05	75.55	141.55	134.31	AT3G05060	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; 	NOP58; nucleolar protein 58; K14565; 	NP_187157.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]
AT3G05165	0.641644746013004	0.278580737609303	0.0212640418876911	0.156268032948346	Up	17.01	19.97	30.63	27.92	AT3G05165	GO:0008643,carbohydrate transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_001154590.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT3G05480	0.613252563611368	0.214590488943267	0.00426615081930414	0.0460989554995364	Up	44.16	51.73	67.78	81.46	AT3G05480	GO:0000076,DNA replication checkpoint signaling; GO:0000077,DNA damage checkpoint signaling; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006282,regulation of DNA repair; GO:0030896,checkpoint clamp complex; GO:0031573,mitotic intra-S DNA damage checkpoint signaling; GO:0071479,cellular response to ionizing radiation; 	RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]; K10994; 	NP_001319478.1 cell cycle checkpoint control protein family [Arabidopsis thaliana]
AT3G05520	-1.00138273793249	0.22890678036941	1.21637960839995e-05	0.0003592664057667	Down	109.93	97.87	41.02	65.04	AT3G05520	GO:0003779,actin binding; GO:0005634,nucleus; GO:0007015,actin filament organization; GO:0008290,F-actin capping protein complex; GO:0030036,actin cytoskeleton organization; GO:0051015,actin filament binding; GO:0051016,barbed-end actin filament capping; GO:0051693,actin filament capping; 	CAPZA; capping protein (actin filament) muscle Z-line, alpha; K10364; 	NP_001326001.1 Subunits of heterodimeric actin filament capping protein Capz superfamily [Arabidopsis thaliana]
AT3G05560	0.950030793647364	0.168798580129897	1.82108474639677e-08	1.02684346722964e-06	Up	268.65	263.00	571.41	470.83	AT3G05560	GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L22e, RPL22; large subunit ribosomal protein L22e; K02891; 	NP_001078112.1 Ribosomal L22e protein family [Arabidopsis thaliana]
AT3G05800	1.12279514323037	0.426534070039567	0.00847916684653725	0.0786129033866178	Up	16.21	18.62	35.55	41.61	AT3G05800	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009742,brassinosteroid mediated signaling pathway; GO:0046983,protein dimerization activity; 	--	NP_566260.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 [Arabidopsis thaliana]
AT3G05810	0.754066187437782	0.282344690029736	0.007568669637823	0.0722225745055341	Up	98.83	84.32	165.24	148.44	AT3G05810	--	--	NP_001327733.1 IGR motif protein [Arabidopsis thaliana]
AT3G05960	-0.999248458002856	0.264293089589904	0.000156303493844056	0.00314135140542349	Down	46.89	41.23	23.91	20.78	AT3G05960	GO:0008643,carbohydrate transport; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0055085,transmembrane transport; 	--	NP_187247.1 sugar transporter 6 [Arabidopsis thaliana]
AT3G06050	-0.599905647926914	0.302940181540991	0.0476723472354334	0.268440974786905	Down	75.62	66.42	36.16	59.68	AT3G06050	GO:0004601,peroxidase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0008379,thioredoxin peroxidase activity; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0034599,cellular response to oxidative stress; GO:0042744,hydrogen peroxide catabolic process; GO:0045454,cell redox homeostasis; GO:0098869,cellular oxidant detoxification; 	--	NP_566268.1 peroxiredoxin IIF [Arabidopsis thaliana]
AT3G06170	0.899258963432401	0.143241406801125	3.43118965444943e-10	2.72845561945162e-08	Up	110.29	118.70	212.89	221.14	AT3G06170	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_187268.2 Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]
AT3G06190	-0.700421580019277	0.222976723468929	0.00168238804991317	0.0220846812266379	Down	61.77	77.56	41.13	46.12	AT3G06190	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006970,response to osmotic stress; GO:0009628,response to abiotic stimulus; GO:0016567,protein ubiquitination; GO:0042631,cellular response to water deprivation; GO:0071472,cellular response to salt stress; GO:0110165,cellular anatomical entity; 	SPOP; speckle-type POZ protein; K10523; 	NP_566275.1 BTB-POZ and MATH domain 2 [Arabidopsis thaliana]
AT3G06210	1.22413497365123	0.517751512687561	0.0180627584516724	0.139519625524904	Up	4.00	2.20	8.64	6.06	AT3G06210	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_187272.3 ARM repeat superfamily protein [Arabidopsis thaliana]
AT3G06490	-1.34813682324326	0.646110800293983	0.0369296246238143	0.228353248158782	Down	15.19	9.27	4.86	4.91	AT3G06490	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0008219,cell death; GO:0009620,response to fungus; GO:0043565,sequence-specific DNA binding; GO:0120195,positive regulation of anther dehiscence; 	--	NP_187301.1 myb domain protein 108 [Arabidopsis thaliana]
AT3G06530	1.04016431512727	0.159870440369132	7.70266754096448e-11	7.2387568822473e-09	Up	15.26	14.33	31.92	29.88	AT3G06530	GO:0000325,plant-type vacuole; GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009507,chloroplast; GO:0030515,snoRNA binding; GO:0030686,90S preribosome; GO:0032040,small-subunit processome; GO:0034455,t-UTP complex; GO:0042254,ribosome biogenesis; GO:0045943,positive regulation of transcription by RNA polymerase I; GO:1990904,ribonucleoprotein complex; 	UTP10, HEATR1; U3 small nucleolar RNA-associated protein 10; K14550; 	NP_001189828.1 ARM repeat superfamily protein [Arabidopsis thaliana]
AT3G06680	0.883471189381512	0.26488785531455	0.000852181512697254	0.012907584450561	Up	125.51	135.91	250.41	239.29	AT3G06680	GO:0002181,cytoplasmic translation; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L29e, RPL29; large subunit ribosomal protein L29e; K02905; 	NP_001118594.1 Ribosomal L29e protein family [Arabidopsis thaliana]
AT3G06700	1.01321849197124	0.237362063231039	1.96648714798637e-05	0.000555678202067676	Up	207.84	256.12	448.12	503.78	AT3G06700	GO:0002181,cytoplasmic translation; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L29e, RPL29; large subunit ribosomal protein L29e; K02905; 	NP_001030650.1 Ribosomal L29e protein family [Arabidopsis thaliana]
AT3G06730	-1.01564516324722	0.397006570668178	0.0105198066715574	0.0933463531907504	Down	54.33	47.58	27.51	23.58	AT3G06730	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009657,plastid organization; GO:0015035,protein-disulfide reductase activity; GO:0015036,disulfide oxidoreductase activity; GO:0016491,oxidoreductase activity; GO:0042644,chloroplast nucleoid; GO:0045454,cell redox homeostasis; GO:0047134,protein-disulfide reductase (NAD(P)) activity; 	--	NP_187329.1 Thioredoxin z [Arabidopsis thaliana]
AT3G06790	0.918531330908374	0.389149578972426	0.0182574318680996	0.140271609740279	Up	21.88	21.26	50.23	32.29	AT3G06790	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0016554,cytidine to uridine editing; GO:0043170,macromolecule metabolic process; GO:0046983,protein dimerization activity; GO:0050897,cobalt ion binding; GO:0080156,mitochondrial mRNA modification; GO:1900864,mitochondrial RNA modification; 	--	NP_974243.1 plastid developmental protein DAG [Arabidopsis thaliana]
AT3G07050	0.737109971821891	0.184846567947449	6.67210416133353e-05	0.00156460211949608	Up	44.88	45.64	73.32	80.12	AT3G07050	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009506,plasmodesma; GO:0010077,maintenance of inflorescence meristem identity; GO:0045604,regulation of epidermal cell differentiation; GO:0045892,negative regulation of DNA-templated transcription; GO:0045995,regulation of embryonic development; GO:0048444,floral organ morphogenesis; GO:0048825,cotyledon development; GO:2000024,regulation of leaf development; 	NUG1, GNL3; nuclear GTP-binding protein; K14538; 	NP_187361.1 GTP-binding family protein [Arabidopsis thaliana]
AT3G07110	0.591702457002155	0.118732057402278	6.24409175901362e-07	2.47469515241418e-05	Up	421.27	425.46	633.80	663.23	AT3G07110	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015934,large ribosomal subunit; GO:0017148,negative regulation of translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae; K02872; 	NP_187367.1 Ribosomal protein L13 family protein [Arabidopsis thaliana]
AT3G07170	0.795486607415651	0.379393178914546	0.0360171219972088	0.224857774723389	Up	29.68	21.49	40.74	49.78	AT3G07170	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; 	--	NP_566300.1 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]
AT3G07200	-1.0235105668465	0.447873944740527	0.0222973048065241	0.16175325504382	Down	40.54	45.97	27.04	15.80	AT3G07200	GO:0003674,molecular_function; GO:0005730,nucleolus; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008150,biological_process; GO:0032183,SUMO binding; GO:0046872,metal ion binding; 	--	NP_001078119.1 RING/U-box superfamily protein [Arabidopsis thaliana]
AT3G07230	0.952031166503634	0.134733134688261	1.59405146487882e-12	2.0598133772731e-10	Up	1311.03	1203.52	2338.20	2609.03	AT3G07230	GO:0005829,cytosol; 	--	NP_187379.1 wound-responsive protein-like protein [Arabidopsis thaliana]
AT3G07370	1.196091174495	0.585989447242872	0.0412361208743557	0.245432920725534	Up	7.00	6.77	12.50	19.70	AT3G07370	GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0009266,response to temperature stimulus; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0045862,positive regulation of proteolysis; GO:0051087,chaperone binding; GO:0061630,ubiquitin protein ligase activity; GO:0071218,cellular response to misfolded protein; 	STUB1, CHIP; STIP1 homology and U-box containing protein 1 [EC:2.3.2.27]; K09561; 	NP_566305.1 carboxyl terminus of HSC70-interacting protein [Arabidopsis thaliana]
AT3G07390	-0.892918151091131	0.152978920324852	5.31903966569145e-09	3.4214795619398e-07	Down	271.34	268.47	153.12	141.97	AT3G07390	--	--	NP_566306.3 auxin-induced in root cultures-like protein [Arabidopsis thaliana]
AT3G07430	0.994347116077054	0.299345649480849	0.000894594046809042	0.0134258367827	Up	41.56	36.84	66.14	93.09	AT3G07430	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0042651,thylakoid membrane; GO:0090143,nucleoid organization; 	--	NP_566307.1 YGGT family protein [Arabidopsis thaliana]
AT3G07590	0.80001560374817	0.368941312418372	0.0301275936102045	0.199643589067621	Up	43.19	70.49	88.60	112.69	AT3G07590	GO:0000243,commitment complex; GO:0000325,plant-type vacuole; GO:0000387,spliceosomal snRNP assembly; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005682,U5 snRNP; GO:0005685,U1 snRNP; GO:0005686,U2 snRNP; GO:0005687,U4 snRNP; GO:0005689,U12-type spliceosomal complex; GO:0005730,nucleolus; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0034715,pICln-Sm protein complex; GO:0034719,SMN-Sm protein complex; GO:0035194,post-transcriptional gene silencing by RNA; GO:0043229,intracellular organelle; GO:0071011,precatalytic spliceosome; GO:0071013,catalytic step 2 spliceosome; GO:0097526,spliceosomal tri-snRNP complex; GO:1990904,ribonucleoprotein complex; 	SNRPD1, SMD1; small nuclear ribonucleoprotein D1; K11087; 	NP_001189837.1 Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]
AT3G07750	0.80093809354863	0.192988010689111	3.32190519682167e-05	0.00086390427602878	Up	85.44	77.46	149.72	138.56	AT3G07750	GO:0000176,nuclear exosome (RNase complex); GO:0000177,cytoplasmic exosome (RNase complex); GO:0000467,exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0016075,rRNA catabolic process; GO:0034427,nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'; GO:0034473,U1 snRNA 3'-end processing; GO:0034475,U4 snRNA 3'-end processing; GO:0034476,U5 snRNA 3'-end processing; GO:0043928,exonucleolytic catabolism of deadenylated mRNA; GO:0071028,nuclear mRNA surveillance; GO:0071035,nuclear polyadenylation-dependent rRNA catabolic process; GO:0071038,nuclear polyadenylation-dependent tRNA catabolic process; GO:0071042,nuclear polyadenylation-dependent mRNA catabolic process; 	RRP42, EXOSC7; exosome complex component RRP42; K12589; 	NP_001319497.1 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
AT3G07760	0.802254511685623	0.382260759844671	0.0358424651417519	0.223880050394478	Up	29.50	29.09	56.24	47.40	AT3G07760	GO:0005515,protein binding; GO:0008150,biological_process; 	--	NP_001327338.1 Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]
AT3G07850	-0.704896101468951	0.156675745951927	6.82494301462764e-06	0.000217339482340373	Down	143.73	150.45	91.76	91.64	AT3G07850	GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0047911,galacturan 1,4-alpha-galacturonidase activity; GO:0071555,cell wall organization; 	E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]; K01213; 	NP_187442.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT3G07860	1.42467773996336	0.679823241121102	0.036112445316176	1	Up	8.72	5.02	16.15	21.54	AT3G07860	GO:0000398,mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005689,U12-type spliceosomal complex; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:1990904,ribonucleoprotein complex; 	--	NP_001325551.1 Ubiquitin-like superfamily protein [Arabidopsis thaliana]
AT3G08520	0.792304209602654	0.351908557505347	0.0243571064688848	0.172459991864449	Up	219.27	274.01	428.30	439.37	AT3G08520	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex; 	RP-L41e, RPL41; large subunit ribosomal protein L41e; K02928; 	--
AT3G08630	-1.06765645586582	0.50633950384273	0.0349810034518871	0.220180906713636	Down	20.67	19.94	13.89	5.53	AT3G08630	GO:0009507,chloroplast; GO:0009536,plastid; GO:0016020,membrane; GO:0031969,chloroplast membrane; 	--	NP_187475.1 alphavirus core family protein (DUF3411) [Arabidopsis thaliana]
AT3G08860	1.45079061272602	0.3494840181549	3.30684661435414e-05	0.0008617947951904	Up	9.85	9.76	26.98	27.51	AT3G08860	GO:0003824,catalytic activity; GO:0005739,mitochondrion; GO:0008453,alanine-glyoxylate transaminase activity; GO:0008483,transaminase activity; GO:0009853,photorespiration; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding; GO:0043562,cellular response to nitrogen levels; 	AGXT2; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase [EC:2.6.1.44 2.6.1.40]; K00827; 	NP_187498.1 PYRIMIDINE 4 [Arabidopsis thaliana]
AT3G08970	-1.18691908875558	0.51894983588859	0.0221867351812289	0.16113960768334	Down	10.22	9.44	4.71	4.04	AT3G08970	GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0009408,response to heat; GO:0009506,plasmodesma; GO:0009860,pollen tube growth; GO:0016491,oxidoreductase activity; GO:0034605,cellular response to heat; 	--	NP_001319504.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]
AT3G09440	-0.778003477397569	0.110026361461661	1.53749862851943e-12	2.00764952492458e-10	Down	304.34	302.27	172.01	187.76	AT3G09440	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0002020,protease binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009615,response to virus; GO:0016363,nuclear matrix; GO:0016887,ATP hydrolysis activity; GO:0022626,cytosolic ribosome; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0048046,apoplast; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone; 	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283; 	NP_001189847.1 Heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]
AT3G09550	-1.74678227121223	0.728929860118714	0.0165585754152472	1	Down	4.67	6.24	1.45	1.87	AT3G09550	GO:0005515,protein binding; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_001319511.1 Ankyrin repeat family protein [Arabidopsis thaliana]
AT3G09630	0.840715644757828	0.0960991868738395	2.16368723866456e-18	7.66872577018111e-16	Up	439.03	415.47	796.22	758.55	AT3G09630	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L4e, RPL4; large subunit ribosomal protein L4e; K02930; 	NP_187574.1 Ribosomal protein L4/L1 family [Arabidopsis thaliana]
AT3G09720	1.16999669254341	0.366891254809748	0.00142792154368369	0.0194979342678192	Up	9.37	8.87	19.09	22.68	AT3G09720	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0030490,maturation of SSU-rRNA; 	--	NP_001326599.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT3G09980	1.55959463387134	0.591666524620376	0.00839057468597223	0.0780247968361961	Up	150.96	162.08	664.21	274.67	AT3G09980	GO:0002218,activation of innate immune response; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008017,microtubule binding; GO:1900426,positive regulation of defense response to bacterium; 	--	NP_187609.2 ankyrin repeat 30A-like protein (DUF662) [Arabidopsis thaliana]
AT3G10190	-0.712088075379689	0.360566020071893	0.0482775323733091	0.270792093223906	Down	48.72	48.64	29.46	30.99	AT3G10190	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; 	CML; calcium-binding protein CML; K13448; 	NP_187630.1 Calcium-binding EF-hand family protein [Arabidopsis thaliana]
AT3G10250	0.820212337773846	0.412463860727671	0.046748932332477	0.265370860372953	Up	17.69	11.32	30.00	21.98	AT3G10250	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0016874,ligase activity; 	--	NP_001327816.1 histidine-tRNA ligase [Arabidopsis thaliana]
AT3G10340	-0.856235587416713	0.249440554829842	0.000597770884350949	0.00975703660575463	Down	33.09	44.98	21.77	22.06	AT3G10340	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006559,L-phenylalanine catabolic process; GO:0009698,phenylpropanoid metabolic process; GO:0009800,cinnamic acid biosynthetic process; GO:0016829,lyase activity; GO:0016841,ammonia-lyase activity; GO:0045548,phenylalanine ammonia-lyase activity; 	PAL; phenylalanine ammonia-lyase [EC:4.3.1.24]; K10775; 	NP_187645.1 phenylalanine ammonia-lyase 4 [Arabidopsis thaliana]
AT3G10450	1.37431848445092	0.498400201411518	0.00582523880834782	0.0585118116741334	Up	5.42	5.19	13.09	14.89	AT3G10450	GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0016787,hydrolase activity; GO:0019748,secondary metabolic process; 	--	NP_001325521.1 serine carboxypeptidase-like 7 [Arabidopsis thaliana]
AT3G10530	0.784016782721238	0.292440097253043	0.00734138562676874	0.0703785847759399	Up	16.00	20.30	32.47	30.97	AT3G10530	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0032040,small-subunit processome; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_187664.2 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT3G10550	-1.15528932804007	0.470162845911584	0.0140020410474257	0.115537185788781	Down	8.17	7.96	3.74	3.61	AT3G10550	GO:0004438,phosphatidylinositol-3-phosphatase activity; GO:0004721,phosphoprotein phosphatase activity; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0006629,lipid metabolic process; GO:0010008,endosome membrane; GO:0016020,membrane; GO:0016311,dephosphorylation; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; GO:0031410,cytoplasmic vesicle; GO:0035556,intracellular signal transduction; GO:0042631,cellular response to water deprivation; GO:0046856,phosphatidylinositol dephosphorylation; GO:0052629,phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity; GO:2000070,regulation of response to water deprivation; 	MTMR1_2; myotubularin-related protein 1/2 [EC:3.1.3.64 3.1.3.95]; K18081; 	NP_187666.5 Myotubularin-like phosphatases II superfamily [Arabidopsis thaliana]
AT3G10590	-4.73021247409548	2.26810257344614	0.0370205577425968	1	Down	3.02	2.90	0.00	0.00	AT3G10590	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0006355,regulation of DNA-templated transcription; 	--	NP_187670.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]
AT3G11120	0.636334916794582	0.187495621816215	0.000689135368887194	0.0108799182055071	Up	1114.38	1016.82	1799.72	1562.84	AT3G11120	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex; 	RP-L41e, RPL41; large subunit ribosomal protein L41e; K02928; 	--
AT3G11450	0.858367914963811	0.222533900097448	0.00011467191098627	0.00240288016179845	Up	25.67	24.37	47.74	44.41	AT3G11450	GO:0003677,DNA binding; GO:0005829,cytosol; GO:0006450,regulation of translational fidelity; GO:0009793,embryo development ending in seed dormancy; GO:0009909,regulation of flower development; GO:0030544,Hsp70 protein binding; GO:0043022,ribosome binding; GO:0048366,leaf development; GO:0051083,'de novo' cotranslational protein folding; GO:1902182,shoot apical meristem development; 	--	NP_187752.2 DnaJ and Myb-like DNA-binding domain-containing protein [Arabidopsis thaliana]
AT3G11630	-0.585968128954285	0.1141787016096	2.86639041973909e-07	1.23791564170442e-05	Down	807.00	715.29	489.11	542.13	AT3G11630	GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0045454,cell redox homeostasis; GO:0048046,apoplast; GO:0051920,peroxiredoxin activity; GO:0098869,cellular oxidant detoxification; GO:0140824,thioredoxin-dependent peroxiredoxin activity; GO:1901149,salicylic acid binding; 	PRDX2_4, ahpC; peroxiredoxin 2/4 [EC:1.11.1.24]; K03386; 	NP_187769.1 Thioredoxin superfamily protein [Arabidopsis thaliana]
AT3G11680	-2.73262703989484	1.18665428540607	0.0212901198135697	1	Down	3.82	2.97	0.46	0.59	AT3G11680	GO:0003674,molecular_function; GO:0006811,ion transport; GO:0009705,plant-type vacuole membrane; GO:0015743,malate transport; GO:0016020,membrane; GO:0098656,anion transmembrane transport; 	--	NP_001327288.1 aluminum activated malate transporter family protein [Arabidopsis thaliana]
AT3G11710	0.692129199380401	0.12923541371764	8.52875037421113e-08	4.04437276397307e-06	Up	124.31	126.49	222.45	188.88	AT3G11710	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004824,lysine-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006430,lysyl-tRNA aminoacylation; GO:0009506,plasmodesma; GO:0016874,ligase activity; GO:0046872,metal ion binding; 	KARS, lysS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]; K04567; 	NP_187777.1 lysyl-tRNA synthetase 1 [Arabidopsis thaliana]
AT3G11780	-0.691439995409549	0.317544725830303	0.0294464845875459	0.198093080969906	Down	81.27	80.35	57.55	43.72	AT3G11780	GO:0000325,plant-type vacuole; GO:0015918,sterol transport; GO:0032366,intracellular sterol transport; GO:0032934,sterol binding; GO:0099503,secretory vesicle; 	--	NP_566400.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana]
AT3G11900	-1.16753238407162	0.571989171179811	0.0412330209493892	0.245432920725534	Down	10.82	11.30	6.23	3.67	AT3G11900	GO:0003333,amino acid transmembrane transport; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006865,amino acid transport; GO:0009624,response to nematode; GO:0015173,aromatic amino acid transmembrane transporter activity; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015179,L-amino acid transmembrane transporter activity; GO:0015801,aromatic amino acid transport; GO:0015804,neutral amino acid transport; GO:0015807,L-amino acid transport; GO:0016020,membrane; GO:1902475,L-alpha-amino acid transmembrane transport; 	SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter); K14209; 	NP_001327533.1 aromatic and neutral transporter 1 [Arabidopsis thaliana]
AT3G11964	0.917515742882182	0.163388651316905	1.95947682499931e-08	1.08092193324214e-06	Up	18.23	17.14	32.17	35.79	AT3G11964	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005886,plasma membrane; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0009553,embryo sac development; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	--	NP_001326789.1 RIBOSOMAL RNA PROCESSING 5 [Arabidopsis thaliana]
AT3G12050	-0.602336761602108	0.2383251847999	0.0114919208092593	0.0994123275026932	Down	66.63	65.86	46.11	42.46	AT3G12050	GO:0001671,ATPase activator activity; GO:0005829,cytosol; GO:0006457,protein folding; GO:0032781,positive regulation of ATP-dependent activity; GO:0051087,chaperone binding; GO:0051879,Hsp90 protein binding; 	--	NP_566410.1 Aha1 domain-containing protein [Arabidopsis thaliana]
AT3G12080	0.587176609761126	0.29762293285395	0.0485083635362725	0.271914256514894	Up	14.47	15.25	20.84	24.61	AT3G12080	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0005525,GTP binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009793,embryo development ending in seed dormancy; GO:0042254,ribosome biogenesis; GO:0042793,plastid transcription; 	--	NP_187815.2 GTP-binding family protein [Arabidopsis thaliana]
AT3G12270	0.702825430386338	0.353451712526226	0.046760576657869	0.265370860372953	Up	9.86	13.55	17.38	21.38	AT3G12270	GO:0000976,transcription cis-regulatory region binding; GO:0005737,cytoplasm; GO:0008168,methyltransferase activity; GO:0016274,protein-arginine N-methyltransferase activity; GO:0016740,transferase activity; GO:0018216,peptidyl-arginine methylation; GO:0032259,methylation; GO:0046872,metal ion binding; 	--	NP_187835.2 protein arginine methyltransferase 3 [Arabidopsis thaliana]
AT3G12410	1.32345786652722	0.577830705046805	0.0219986988611438	0.159961230581764	Up	13.19	5.20	24.35	22.54	AT3G12410	GO:0003676,nucleic acid binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008408,3'-5' exonuclease activity; GO:0016740,transferase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis; 	--	NP_187847.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]
AT3G12580	-1.75003639955376	0.543078564091975	0.00127105162634142	0.0176566578104875	Down	8.64	10.15	2.59	3.11	AT3G12580	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009266,response to temperature stimulus; GO:0009408,response to heat; GO:0009505,plant-type cell wall; GO:0009615,response to virus; GO:0009617,response to bacterium; GO:0016567,protein ubiquitination; GO:0016887,ATP hydrolysis activity; GO:0031072,heat shock protein binding; GO:0031625,ubiquitin protein ligase binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone; 	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283; 	NP_187864.1 heat shock protein 70 [Arabidopsis thaliana]
AT3G12630	0.639723162118571	0.277000155328726	0.0209175919179941	0.15436212239305	Up	105.26	71.44	121.57	158.97	AT3G12630	GO:0003677,DNA binding; GO:0004842,ubiquitin-protein transferase activity; GO:0005634,nucleus; GO:0006970,response to osmotic stress; GO:0008270,zinc ion binding; GO:0009414,response to water deprivation; GO:0016567,protein ubiquitination; GO:0046872,metal ion binding; GO:0051865,protein autoubiquitination; 	--	NP_566429.1 A20/AN1-like zinc finger family protein [Arabidopsis thaliana]
AT3G12670	0.879286984045888	0.223979214683465	8.64589850709175e-05	0.00191864706584031	Up	26.52	30.16	49.59	56.42	AT3G12670	GO:0000166,nucleotide binding; GO:0003883,CTP synthase activity; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0006241,CTP biosynthetic process; GO:0006541,glutamine metabolic process; GO:0009733,response to auxin; GO:0009793,embryo development ending in seed dormancy; GO:0016874,ligase activity; GO:0019856,pyrimidine nucleobase biosynthetic process; GO:0042802,identical protein binding; GO:0044210,'de novo' CTP biosynthetic process; 	pyrG, CTPS; CTP synthase [EC:6.3.4.2]; K01937; 	CAA0382192.1 unnamed protein product [Arabidopsis thaliana]
AT3G12720	1.27127476890489	0.326414536766174	9.83351617545301e-05	0.0021141207652772	Up	277.14	402.98	944.42	725.37	AT3G12720	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0006355,regulation of DNA-templated transcription; 	--	NP_566434.1 myb domain protein 67 [Arabidopsis thaliana]
AT3G12810	1.23588322494855	0.366061081700135	0.000735033763052829	0.0114693004159375	Up	3.49	3.80	12.04	5.35	AT3G12810	GO:0000166,nucleotide binding; GO:0000812,Swr1 complex; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0009505,plant-type cell wall; GO:0009908,flower development; GO:0016514,SWI/SNF complex; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0030154,cell differentiation; GO:0042393,histone binding; GO:0046686,response to cadmium ion; GO:0140658,ATP-dependent chromatin remodeler activity; 	--	NP_187887.3 SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana]
AT3G12860	1.46226876375624	0.401249797895618	0.000268135796698067	0.00497166158107079	Up	8.59	6.87	18.00	25.45	AT3G12860	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	NOP56; nucleolar protein 56; K14564; 	NP_187892.2 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]
AT3G13080	1.4327611272711	0.183797211934797	6.42370289514968e-15	1.285258619586e-12	Up	12.61	13.92	34.53	38.27	AT3G13080	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0008559,ABC-type xenobiotic transporter activity; GO:0009506,plasmodesma; GO:0010290,chlorophyll catabolite transmembrane transporter activity; GO:0015431,ABC-type glutathione S-conjugate transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0042908,xenobiotic transport; GO:0048046,apoplast; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; 	--	NP_187915.1 multidrug resistance-associated protein 3 [Arabidopsis thaliana]
AT3G13229	2.66366453365135	1.11211920236291	0.0166146987858842	1	Up	0.81	1.18	9.70	2.99	AT3G13229	GO:0008150,biological_process; 	--	NP_683561.1 kinesin-like protein (DUF868) [Arabidopsis thaliana]
AT3G13230	0.925708337101135	0.271890403226728	0.000662340284356931	0.0105608370532747	Up	44.47	53.65	91.65	97.74	AT3G13230	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0008150,biological_process; 	--	NP_001326485.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana]
AT3G13580	0.740050821574859	0.256518603629825	0.00391439592536939	0.0432011400838143	Up	48.13	58.51	92.28	88.53	AT3G13580	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L7e, RPL7; large subunit ribosomal protein L7e; K02937; 	NP_001326486.1 Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]
AT3G13610	-1.72930176354854	0.728473190442413	0.0176026741309704	1	Down	9.71	8.54	2.80	2.80	AT3G13610	GO:0009699,phenylpropanoid biosynthetic process; GO:0009805,coumarin biosynthetic process; GO:0010421,hydrogen peroxide-mediated programmed cell death; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:1990641,response to iron ion starvation; 	F6H; feruloyl-CoA 6-hydroxylase [EC:1.14.11.61]; K06892; 	NP_187970.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]
AT3G13940	1.01214931671071	0.337703024826172	0.00272509450176738	0.0322564859679621	Up	13.40	15.11	31.23	27.09	AT3G13940	GO:0000428,DNA-directed RNA polymerase complex; GO:0001188,RNA polymerase I preinitiation complex assembly; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0006362,transcription elongation by RNA polymerase I; 	RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49; K03005; 	NP_188010.1 DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
AT3G14040	-0.68699486624085	0.188775387077713	0.000273466777023395	0.00503316820322731	Down	92.63	92.38	57.50	59.33	AT3G14040	GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity; 	E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]; K01213; 	NP_188020.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT3G14210	2.08996626849938	0.132997226798817	1.20593260246467e-55	7.47979696678713e-52	Up	106.51	131.26	537.23	490.48	AT3G14210	GO:0000325,plant-type vacuole; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009625,response to insect; GO:0009941,chloroplast envelope; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0048046,apoplast; GO:0099503,secretory vesicle; 	--	NP_188037.1 GDSL-like lipase/acylhydrolase superfamily protein [Arabidopsis thaliana]
AT3G14390	0.725734785230636	0.187715723067211	0.000110572640243367	0.00233671823205957	Up	62.16	51.15	93.93	96.60	AT3G14390	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0008836,diaminopimelate decarboxylase activity; GO:0009085,lysine biosynthetic process; GO:0009089,lysine biosynthetic process via diaminopimelate; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; 	lysA; diaminopimelate decarboxylase [EC:4.1.1.20]; K01586; 	NP_188056.1 Pyridoxal-dependent decarboxylase family protein [Arabidopsis thaliana]
AT3G14395	1.47672124953303	0.64082852361237	0.0212005501046756	0.155893790188797	Up	24.66	13.55	45.88	62.79	AT3G14395	GO:0002213,defense response to insect; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009863,salicylic acid mediated signaling pathway; GO:0009867,jasmonic acid mediated signaling pathway; GO:0012505,endomembrane system; GO:0015979,photosynthesis; GO:0045454,cell redox homeostasis; GO:0080027,response to herbivore; GO:1900367,positive regulation of defense response to insect; 	--	NP_566485.1 hypothetical protein AT3G14395 [Arabidopsis thaliana]
AT3G14430	0.874710502570913	0.222100444738568	8.20419872036184e-05	0.00184612989307559	Up	215.02	214.03	426.56	371.84	AT3G14430	GO:0006979,response to oxidative stress; GO:0016020,membrane; 	--	NP_566488.1 GRIP/coiled-coil protein [Arabidopsis thaliana]
AT3G14600	1.45071958426084	0.225504009806692	1.24918857822734e-10	1.10687030806501e-08	Up	154.01	89.19	360.70	315.06	AT3G14600	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L18Ae, RPL18A; large subunit ribosomal protein L18Ae; K02882; 	NP_188078.1 Ribosomal protein L18ae/LX family protein [Arabidopsis thaliana]
AT3G14990	-0.817879672639211	0.172519274510102	2.12874188131182e-06	7.6542153732386e-05	Down	136.12	135.63	80.71	75.80	AT3G14990	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0019172,glyoxalase III activity; GO:0019249,lactate biosynthetic process; GO:0061727,methylglyoxal catabolic process to lactate; GO:1900409,positive regulation of cellular response to oxidative stress; GO:1903189,glyoxal metabolic process; 	--	NP_188117.1 Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]
AT3G15357	2.22434085673895	0.773553812782846	0.00403409837963276	1	Up	8.14	2.38	20.31	30.13	AT3G15357	GO:0003674,molecular_function; 	--	NP_566510.1 phosphopantothenoylcysteine decarboxylase subunit [Arabidopsis thaliana]
AT3G15400	-1.3003545726021	0.10017748002103	1.57830435502026e-38	3.91577310480526e-35	Down	856.25	886.14	342.57	376.94	AT3G15400	GO:0008150,biological_process; GO:0009505,plant-type cell wall; 	--	NP_188159.1 anther 20 [Arabidopsis thaliana]
AT3G15460	0.889134607670291	0.395827119031552	0.0246867148809311	0.174108542397408	Up	14.33	15.21	28.12	27.46	AT3G15460	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0019843,rRNA binding; GO:0042254,ribosome biogenesis; 	--	NP_566514.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]
AT3G15470	-1.13218735459138	0.571056688218935	0.0474100984811997	0.267880517698596	Down	6.54	4.47	2.04	3.11	AT3G15470	GO:0003674,molecular_function; GO:0005515,protein binding; 	--	NP_566515.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT3G15500	0.801838334387759	0.345679064639995	0.0203623416468485	0.151345025841316	Up	19.40	21.05	35.73	35.92	AT3G15500	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0009867,jasmonic acid mediated signaling pathway; 	--	NP_188169.1 NAC domain containing protein 3 [Arabidopsis thaliana]
AT3G15510	-1.40102918673359	0.473670015110933	0.0030982607563874	0.0356199487330729	Down	21.82	22.81	11.40	5.55	AT3G15510	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009753,response to jasmonic acid; GO:0045995,regulation of embryonic development; GO:0048317,seed morphogenesis; GO:0048731,system development; GO:0080060,integument development; 	--	NP_188170.1 NAC domain containing protein 2 [Arabidopsis thaliana]
AT3G15730	-0.630619102511341	0.111112572651512	1.38286350919069e-08	8.05371916972324e-07	Down	590.68	546.87	332.18	414.73	AT3G15730	GO:0003824,catalytic activity; GO:0004620,phospholipase activity; GO:0004630,phospholipase D activity; GO:0005096,GTPase activator activity; GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005546,phosphatidylinositol-4,5-bisphosphate binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0009395,phospholipid catabolic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0009873,ethylene-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0010358,leaf shaping; GO:0016020,membrane; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0030136,clathrin-coated vesicle; GO:0031410,cytoplasmic vesicle; GO:0031966,mitochondrial membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0046470,phosphatidylcholine metabolic process; GO:0046872,metal ion binding; GO:0050790,regulation of catalytic activity; GO:0070290,N-acylphosphatidylethanolamine-specific phospholipase D activity; 	PLD1_2; phospholipase D1/2 [EC:3.1.4.4]; K01115; 	NP_188194.1 phospholipase D alpha 1 [Arabidopsis thaliana]
AT3G15990	-1.65539789841824	0.641114831882037	0.00982120931947039	0.0882841316000218	Down	5.97	8.53	3.27	1.33	AT3G15990	GO:0005886,plasma membrane; GO:0006817,phosphate ion transport; GO:0008271,secondary active sulfate transmembrane transporter activity; GO:0008272,sulfate transport; GO:0009506,plasmodesma; GO:0015293,symporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902358,sulfate transmembrane transport; 	--	NP_188220.1 sulfate transporter 3;4 [Arabidopsis thaliana]
AT3G16080	0.824764848734615	0.229380334371766	0.000323618113914026	0.00578455720908283	Up	135.51	112.53	229.01	217.46	AT3G16080	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-L37e, RPL37; large subunit ribosomal protein L37e; K02922; 	NP_001327284.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT3G16150	-1.68997370884955	0.389149687370623	1.40720259754871e-05	0.000409773432455205	Down	35.45	41.07	14.15	9.76	AT3G16150	GO:0004067,asparaginase activity; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008798,beta-aspartyl-peptidase activity; GO:0016540,protein autoprocessing; GO:0016787,hydrolase activity; 	ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]; K13051; 	NP_566536.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein [Arabidopsis thaliana]
AT3G16190	0.830664326359306	0.320312979675711	0.00950626787128622	0.086014042992929	Up	40.44	37.04	75.94	63.86	AT3G16190	GO:0005829,cytosol; 	--	NP_566539.1 Isochorismatase family protein [Arabidopsis thaliana]
AT3G16240	-1.2699571873683	0.112588966841721	1.65518866380203e-29	1.57943195188186e-26	Down	814.26	769.78	331.17	336.45	AT3G16240	GO:0000325,plant-type vacuole; GO:0000326,protein storage vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009705,plant-type vacuole membrane; GO:0009941,chloroplast envelope; GO:0015200,methylammonium transmembrane transporter activity; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042802,identical protein binding; GO:0042807,central vacuole; GO:0055085,transmembrane transport; GO:0072489,methylammonium transmembrane transport; 	--	NP_188245.1 delta tonoplast integral protein [Arabidopsis thaliana]
AT3G16250	0.693470044024271	0.33906381095659	0.0408302799384544	0.244213897124652	Up	32.00	37.27	55.97	57.84	AT3G16250	GO:0005829,cytosol; GO:0009055,electron transfer activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009773,photosynthetic electron transport in photosystem I; GO:0010598,NAD(P)H dehydrogenase complex (plastoquinone); GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0140647,P450-containing electron transport chain; 	--	NP_188246.1 NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]
AT3G16290	-0.611082544130561	0.26489721966482	0.0210622589349381	0.155052881406603	Down	22.97	21.04	15.39	13.85	AT3G16290	GO:0000166,nucleotide binding; GO:0004176,ATP-dependent peptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0016020,membrane; GO:0016464,chloroplast protein-transporting ATPase activity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0031969,chloroplast membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0045037,protein import into chloroplast stroma; GO:0062091,Ycf2/FtsHi complex; 	--	NP_566541.1 AAA-type ATPase family protein [Arabidopsis thaliana]
AT3G16450	-5.03524655260532	2.1786778872062	0.0208246938524653	1	Down	1.04	3.99	0.00	0.00	AT3G16450	GO:0005634,nucleus; GO:0009506,plasmodesma; GO:0010043,response to zinc ion; GO:0030246,carbohydrate binding; 	--	NP_001030711.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]
AT3G16460	-2.53729106934058	1.01182050484127	0.0121537195225208	1	Down	2.54	3.65	0.48	0.61	AT3G16460	GO:0005507,copper ion binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0030246,carbohydrate binding; 	--	NP_188267.1 Mannose-binding lectin superfamily protein [Arabidopsis thaliana]
AT3G16780	0.935367521503274	0.208923921792993	7.56735963764542e-06	0.000235862051017566	Up	87.39	107.91	201.93	176.97	AT3G16780	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L19e, RPL19; large subunit ribosomal protein L19e; K02885; 	NP_188300.1 Ribosomal protein L19e family protein [Arabidopsis thaliana]
AT3G16810	0.99329055095666	0.201833883768478	8.59593470279264e-07	3.35322547132524e-05	Up	33.94	29.41	68.16	59.91	AT3G16810	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006417,regulation of translation; GO:0009793,embryo development ending in seed dormancy; 	--	NP_566559.1 pumilio 24 [Arabidopsis thaliana]
AT3G16840	0.926193894890855	0.326377861963497	0.0045426160196889	0.0483700873169449	Up	7.83	12.34	21.19	17.64	AT3G16840	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_188307.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT3G16870	1.77165634538672	0.53756431273376	0.000981731275819879	0.0144636300196504	Up	6.54	13.93	38.87	31.80	AT3G16870	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0030154,cell differentiation; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; 	--	NP_188312.1 GATA transcription factor 17 [Arabidopsis thaliana]
AT3G16990	0.895763569117616	0.421147683869162	0.033423546656196	0.213831406018623	Up	22.16	16.24	34.96	37.78	AT3G16990	GO:0005829,cytosol; GO:0006772,thiamine metabolic process; GO:0009228,thiamine biosynthetic process; GO:0009229,thiamine diphosphate biosynthetic process; GO:0016787,hydrolase activity; GO:0050334,thiaminase activity; 	TENA_E; formylaminopyrimidine deformylase / aminopyrimidine aminohydrolase [EC:3.5.1.- 3.5.99.-]; K20896; 	NP_188324.1 heme oxygenase-like, multi-helical [Arabidopsis thaliana]
AT3G17100	0.645366170963818	0.25857662291637	0.0125658866083451	0.106767002312685	Up	69.98	54.62	89.60	108.92	AT3G17100	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0046983,protein dimerization activity; 	--	NP_566567.1 sequence-specific DNA binding transcription factor [Arabidopsis thaliana]
AT3G17150	-1.88522288343809	0.736708515483244	0.0104979565032829	1	Down	15.20	22.27	4.86	5.47	AT3G17150	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; 	--	NP_188340.3 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT3G17225	-5.07220661126957	2.11964221764682	0.0167133301647799	1	Down	4.20	4.15	0.00	0.00	AT3G17225	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; 	--	NP_683571.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT3G17240	-0.595135665631684	0.205282202543133	0.00374223698912379	0.0417205536256804	Down	59.75	61.74	40.87	40.86	AT3G17240	GO:0000166,nucleotide binding; GO:0004148,dihydrolipoyl dehydrogenase activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0008270,zinc ion binding; GO:0016491,oxidoreductase activity; GO:0016668,oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor; GO:0045252,oxoglutarate dehydrogenase complex; GO:0045454,cell redox homeostasis; GO:0050660,flavin adenine dinucleotide binding; GO:0050897,cobalt ion binding; 	DLD, lpd, pdhD; dihydrolipoamide dehydrogenase [EC:1.8.1.4]; K00382; 	NP_566570.3 lipoamide dehydrogenase 2 [Arabidopsis thaliana]
AT3G17410	0.741111565876474	0.290293627904511	0.010680801665198	0.0941217680138044	Up	34.23	25.40	45.30	56.26	AT3G17410	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0106310,protein serine kinase activity; GO:1902584,positive regulation of response to water deprivation; 	PTI1; pto-interacting protein 1 [EC:2.7.11.1]; K13436; 	NP_001326779.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT3G17430	-0.969124127890451	0.479082929987488	0.043086198975439	0.251522022724857	Down	19.73	14.84	10.17	7.69	AT3G17430	GO:0005794,Golgi apparatus; GO:0008643,carbohydrate transport; GO:0015297,antiporter activity; GO:0016020,membrane; GO:0055085,transmembrane transport; 	--	NP_001326874.1 Nucleotide-sugar transporter family protein [Arabidopsis thaliana]
AT3G17800	-0.674132387631752	0.187958270118592	0.000335009042839976	0.00596239193175022	Down	96.34	103.48	61.50	65.88	AT3G17800	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009611,response to wounding; GO:0010193,response to ozone; GO:0010224,response to UV-B; 	--	NP_566588.1 alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]
AT3G17810	-0.601742251051562	0.149914233590578	5.97211091868727e-05	0.00142743807218335	Down	162.05	169.86	111.17	111.08	AT3G17810	GO:0002058,uracil binding; GO:0005737,cytoplasm; GO:0006210,thymine catabolic process; GO:0006212,uracil catabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016491,oxidoreductase activity; GO:0016627,oxidoreductase activity, acting on the CH-CH group of donors; GO:0017113,dihydropyrimidine dehydrogenase (NADP+) activity; GO:0019483,beta-alanine biosynthetic process; GO:0043562,cellular response to nitrogen levels; GO:0050661,NADP binding; GO:0051536,iron-sulfur cluster binding; 	DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2]; K00207; 	NP_188408.1 pyrimidine 1 [Arabidopsis thaliana]
AT3G17880	0.970009607748752	0.264931188087901	0.000250875680046602	0.00469398614023846	Up	26.03	32.22	58.16	57.69	AT3G17880	GO:0000118,histone deacetylase complex; GO:0005515,protein binding; GO:0006457,protein folding; GO:0010286,heat acclimation; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0030544,Hsp70 protein binding; GO:0042802,identical protein binding; GO:0046983,protein dimerization activity; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051259,protein complex oligomerization; 	--	NP_188415.2 tetraticopeptide domain-containing thioredoxin [Arabidopsis thaliana]
AT3G18000	-1.60340721977712	0.154712509876635	3.6233307310235e-25	2.3656535641235e-22	Down	186.83	179.70	58.98	63.78	AT3G18000	GO:0000234,phosphoethanolamine N-methyltransferase activity; GO:0005737,cytoplasm; GO:0006629,lipid metabolic process; GO:0006656,phosphatidylcholine biosynthetic process; GO:0008168,methyltransferase activity; GO:0008654,phospholipid biosynthetic process; GO:0009555,pollen development; GO:0009826,unidimensional cell growth; GO:0009860,pollen tube growth; GO:0010183,pollen tube guidance; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042425,choline biosynthetic process; GO:0048528,post-embryonic root development; GO:0052667,phosphomethylethanolamine N-methyltransferase activity; GO:0071704,organic substance metabolic process; 	E2.1.1.103, NMT; phosphoethanolamine N-methyltransferase [EC:2.1.1.103]; K05929; 	NP_188427.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT3G18290	0.593625776796596	0.27657318422917	0.0318442227562265	0.207799886002625	Up	9.83	8.48	14.70	13.37	AT3G18290	GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008270,zinc ion binding; GO:0010106,cellular response to iron ion starvation; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016874,ligase activity; GO:0046872,metal ion binding; GO:0055072,iron ion homeostasis; GO:0060586,multicellular organismal iron ion homeostasis; GO:0061630,ubiquitin protein ligase activity; GO:0071456,cellular response to hypoxia; 	--	NP_188457.1 zinc finger protein-like protein [Arabidopsis thaliana]
AT3G18570	-5.02821261044121	2.19762857349294	0.0221365026629732	1	Down	7.48	1.54	0.00	0.00	AT3G18570	GO:0003674,molecular_function; GO:0005811,lipid droplet; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0048608,reproductive structure development; 	--	NP_188487.1 Oleosin family protein [Arabidopsis thaliana]
AT3G18600	1.34327372335005	0.244557393377483	3.95896046099523e-08	2.02102487731053e-06	Up	22.10	19.16	47.64	58.96	AT3G18600	GO:0000166,nucleotide binding; GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_188490.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT3G18610	1.59163582479437	0.550642905906728	0.00384623963781804	0.0426767466074534	Up	3.07	2.56	9.71	7.49	AT3G18610	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0031491,nucleosome binding; GO:1990904,ribonucleoprotein complex; 	--	NP_001325664.1 nucleolin like 2 [Arabidopsis thaliana]
AT3G19070	-3.86448206319496	1.46294721152017	0.00825219866730219	1	Down	8.78	1.73	0.32	0.42	AT3G19070	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; 	--	NP_188537.1 Homeodomain-like superfamily protein [Arabidopsis thaliana]
AT3G19090	1.03766052146865	0.412961128679702	0.0119800404967832	0.102631559445719	Up	9.22	7.82	19.33	16.17	AT3G19090	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005844,polysome; GO:0006396,RNA processing; GO:1990904,ribonucleoprotein complex; 	--	NP_188540.1 RNA-binding protein [Arabidopsis thaliana]
AT3G19130	0.67331087229405	0.338224684226482	0.0465116042329368	0.265032820629114	Up	20.96	14.57	29.41	28.19	AT3G19130	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0008143,poly(A) binding; GO:0010494,cytoplasmic stress granule; GO:0034063,stress granule assembly; GO:0034605,cellular response to heat; 	--	NP_188544.1 RNA-binding protein 47B [Arabidopsis thaliana]
AT3G19250	4.92220083983276	1.89822570911562	0.00951279682004345	1	Up	0.22	0.00	5.30	1.60	AT3G19250	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_188556.2 transmembrane protein, putative (DUF677) [Arabidopsis thaliana]
AT3G19460	-1.17823015403223	0.539284359853394	0.0289032849176563	0.195286083553119	Down	22.42	20.71	10.30	9.03	AT3G19460	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009617,response to bacterium; GO:0016020,membrane; 	RTN3; reticulon-3; K20723; 	NP_001325445.1 Reticulon family protein [Arabidopsis thaliana]
AT3G19520	0.860573186460252	0.25121128762478	0.000613229157518855	0.009956947250028	Up	35.22	39.22	67.42	69.94	AT3G19520	--	--	NP_001327780.1 hypothetical protein (DUF626) [Arabidopsis thaliana]
AT3G19570	-1.74016866953894	0.776006917041392	0.0249313084365075	1	Down	4.28	4.57	1.37	1.32	AT3G19570	GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005874,microtubule; GO:0005880,nuclear microtubule; GO:0008017,microtubule binding; GO:0009658,chloroplast organization; GO:0051225,spindle assembly; 	--	NP_850614.1 SNOWY COTYLEDON protein (DUF566) [Arabidopsis thaliana]
AT3G20000	0.947215100056346	0.130027557441815	3.22325240518252e-13	4.59591334325162e-11	Up	210.11	202.68	382.08	427.28	AT3G20000	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0005742,mitochondrial outer membrane translocase complex; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0006626,protein targeting to mitochondrion; GO:0006811,ion transport; GO:0008320,protein transmembrane transporter activity; GO:0015031,protein transport; GO:0015288,porin activity; GO:0015450,protein-transporting ATPase activity; GO:0016020,membrane; GO:0016036,cellular response to phosphate starvation; GO:0030150,protein import into mitochondrial matrix; GO:0046930,pore complex; GO:0055085,transmembrane transport; 	TOM40; mitochondrial import receptor subunit TOM40; K11518; 	NP_001326561.1 translocase of the outer mitochondrial membrane 40 [Arabidopsis thaliana]
AT3G20090	1.90654279607897	0.877720750932607	0.0298442074321826	1	Up	0.74	1.63	5.14	3.86	AT3G20090	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0008150,biological_process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_188644.2 cytochrome P450, family 705, subfamily A, polypeptide 18 [Arabidopsis thaliana]
AT3G20210	1.52532068572926	0.35554224822534	1.78572583748274e-05	0.000508071766375537	Up	10.87	9.37	33.72	25.39	AT3G20210	GO:0000326,protein storage vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0006624,vacuolar protein processing; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009505,plant-type cell wall; GO:0010214,seed coat development; GO:0012501,programmed cell death; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; GO:0110165,cellular anatomical entity; 	LGMN; legumain [EC:3.4.22.34]; K01369; 	NP_188656.1 delta vacuolar processing enzyme [Arabidopsis thaliana]
AT3G20350	2.12845882623736	0.462735582919734	4.23038520651924e-06	0.000142991630754417	Up	4.17	3.18	21.86	10.73	AT3G20350	--	--	NP_188670.1 actin cytoskeleton-regulatory complex pan-like protein [Arabidopsis thaliana]
AT3G20460	-1.54068878630547	0.701595685329597	0.028093508250695	1	Down	6.55	7.37	2.76	2.07	AT3G20460	GO:0008643,carbohydrate transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_188681.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT3G20510	-1.09427069134373	0.532717210362289	0.0399630588497815	0.240534568186094	Down	46.86	40.77	23.43	18.08	AT3G20510	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009706,chloroplast inner membrane; GO:0012505,endomembrane system; GO:0015245,fatty acid transmembrane transporter activity; GO:0015908,fatty acid transport; GO:0016020,membrane; 	--	NP_188687.1 Transmembrane proteins 14C [Arabidopsis thaliana]
AT3G20790	-0.947854583966518	0.265393815417999	0.000354939625714891	0.00624542703119607	Down	78.32	134.06	48.03	64.18	AT3G20790	GO:0000166,nucleotide binding; GO:0006740,NADPH regeneration; GO:0016491,oxidoreductase activity; 	--	NP_188715.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT3G20810	1.42171101449629	0.660929158126943	0.0314699430041576	1	Up	1.93	3.89	7.18	8.64	AT3G20810	GO:0000791,euchromatin; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0009266,response to temperature stimulus; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009741,response to brassinosteroid; GO:0009742,brassinosteroid mediated signaling pathway; GO:0009787,regulation of abscisic acid-activated signaling pathway; GO:0009908,flower development; GO:0010378,temperature compensation of the circadian clock; GO:0010468,regulation of gene expression; GO:0016491,oxidoreductase activity; GO:0016706,2-oxoglutarate-dependent dioxygenase activity; GO:0040029,epigenetic regulation of gene expression; GO:0042752,regulation of circadian rhythm; GO:0043565,sequence-specific DNA binding; GO:0045814,negative regulation of gene expression, epigenetic; GO:0046872,metal ion binding; GO:0046975,histone methyltransferase activity (H3-K36 specific); GO:0051213,dioxygenase activity; GO:0061628,H3K27me3 modified histone binding; GO:0070544,histone H3-K36 demethylation; GO:0071558,histone H3-tri/di-methyl-lysine-27 demethylase activity; GO:0080022,primary root development; GO:0140680,histone H3-di/monomethyl-lysine-36 demethylase activity; GO:0140681,histone H3-tri/dimethyl-lysine-36 demethylase activity; GO:0140684,histone H3-tri/dimethyl-lysine-9 demethylase activity; GO:1900140,regulation of seedling development; GO:1900457,regulation of brassinosteroid mediated signaling pathway; GO:1990110,callus formation; GO:2000028,regulation of photoperiodism, flowering; 	--	NP_566667.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]
AT3G20870	-1.34261650380732	0.498518430114735	0.00707669632453788	0.0683694843503835	Down	24.81	24.17	7.31	12.53	AT3G20870	GO:0005385,zinc ion transmembrane transporter activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006811,ion transport; GO:0006829,zinc ion transport; GO:0016020,membrane; GO:0030001,metal ion transport; GO:0046873,metal ion transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0071577,zinc ion transmembrane transport; 	--	NP_001326769.1 ZIP metal ion transporter family [Arabidopsis thaliana]
AT3G21180	-1.02280792248756	0.390901054854264	0.00888261716152393	0.0813802554569456	Down	10.06	9.71	6.21	3.59	AT3G21180	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0009555,pollen development; GO:0009567,double fertilization forming a zygote and endosperm; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity; 	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537; 	NP_188755.2 autoinhibited Ca(2+)-ATPase 9 [Arabidopsis thaliana]
AT3G21540	0.624019141824611	0.308834493656838	0.0433251596200384	0.252560434721136	Up	8.82	10.68	16.71	13.76	AT3G21540	GO:0005515,protein binding; GO:0005730,nucleolus; GO:0030490,maturation of SSU-rRNA; GO:0030515,snoRNA binding; GO:0032040,small-subunit processome; GO:0034388,Pwp2p-containing subcomplex of 90S preribosome; 	DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12; K14556; 	NP_188791.3 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT3G21700	-1.4088963813779	0.627283556496202	0.0247022196388101	0.174108542397408	Down	11.01	20.26	4.06	8.06	AT3G21700	GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0090404,pollen tube tip; 	--	NP_850622.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]
AT3G21980	-5.86985584621953	1.56706672576494	0.000179848475505609	1	Down	12.09	20.51	0.00	0.64	AT3G21980	--	--	NP_188836.1 cysteine-rich repeat secretory protein, putative (DUF26) [Arabidopsis thaliana]
AT3G22120	0.883560359287904	0.176372618057566	5.45367057105792e-07	2.21087527562005e-05	Up	147.76	101.93	239.35	228.82	AT3G22120	GO:0003674,molecular_function; GO:0005575,cellular_component; 	--	NP_001327425.1 cell wall-plasma membrane linker protein [Arabidopsis thaliana]
AT3G22230	0.731405226840351	0.130841671332097	2.27066773058988e-08	1.23002765056627e-06	Up	484.66	487.24	864.30	774.06	AT3G22230	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L27e, RPL27; large subunit ribosomal protein L27e; K02901; 	NP_188862.1 Ribosomal L27e protein family [Arabidopsis thaliana]
AT3G22231	-5.14298247024302	2.09238052237161	0.013972969545453	1	Down	10.48	9.42	0.00	0.00	AT3G22231	GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006952,defense response; GO:0007623,circadian rhythm; GO:0009617,response to bacterium; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009863,salicylic acid mediated signaling pathway; GO:0010513,positive regulation of phosphatidylinositol biosynthetic process; GO:0016020,membrane; GO:0046890,regulation of lipid biosynthetic process; GO:0055088,lipid homeostasis; GO:0071494,cellular response to UV-C; GO:1900150,regulation of defense response to fungus; GO:1902290,positive regulation of defense response to oomycetes; GO:2000028,regulation of photoperiodism, flowering; 	--	NP_566702.1 pathogen and circadian controlled 1 [Arabidopsis thaliana]
AT3G22320	0.794152525483215	0.167415079810182	2.09938653354595e-06	7.57060754320857e-05	Up	204.34	197.92	311.24	398.71	AT3G22320	GO:0000418,RNA polymerase IV complex; GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005665,RNA polymerase II, core complex; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0055029,nuclear DNA-directed RNA polymerase complex; 	RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1; K03013; 	NP_188871.1 Eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
AT3G22370	0.952655162895036	0.226152637392168	2.52623136649148e-05	0.000690262116769313	Up	41.58	43.28	86.50	80.25	AT3G22370	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009916,alternative oxidase activity; GO:0010230,alternative respiration; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0031930,mitochondria-nucleus signaling pathway; GO:0043229,intracellular organelle; GO:0045333,cellular respiration; GO:0046872,metal ion binding; GO:0070469,respirasome; GO:0102721,ubiquinol:oxygen oxidoreductase activity; GO:0106292,superoxide-generating NADPH oxidase activity; 	AOX1, AOX2; ubiquinol oxidase [EC:1.10.3.11]; K17893; 	NP_188876.1 alternative oxidase 1A [Arabidopsis thaliana]
AT3G22660	0.877760250679538	0.277761896405613	0.00157705484052269	0.0210585202332443	Up	36.39	41.75	84.94	60.50	AT3G22660	GO:0003723,RNA binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0030687,preribosome, large subunit precursor; GO:0034399,nuclear periphery; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; 	--	NP_188905.1 rRNA processing protein-like protein [Arabidopsis thaliana]
AT3G22680	1.49772627877487	0.451625658089958	0.00091217772824035	0.0136168047157901	Up	31.43	14.65	50.07	82.88	AT3G22680	GO:0000419,RNA polymerase V complex; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006306,DNA methylation; GO:0043621,protein self-association; GO:0044030,regulation of DNA methylation; GO:0070918,small regulatory ncRNA processing; 	--	NP_188907.2 RNA-DIRECTED DNA METHYLATION 1 [Arabidopsis thaliana]
AT3G22690	-1.64816398026903	0.763980892036862	0.0309794431302908	1	Down	3.49	2.83	0.84	1.23	AT3G22690	GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009451,RNA modification; GO:0009507,chloroplast; GO:0009644,response to high light intensity; GO:0010027,thylakoid membrane organization; GO:0010207,photosystem II assembly; GO:0010380,regulation of chlorophyll biosynthetic process; GO:0048564,photosystem I assembly; 	--	CAA0383349.1 unnamed protein product [Arabidopsis thaliana]
AT3G22720	1.56899543491237	0.734211551936175	0.0325996147419727	1	Up	2.67	2.71	10.06	6.09	AT3G22720	GO:0005515,protein binding; 	--	NP_188911.2 F-box/associated interaction domain protein [Arabidopsis thaliana]
AT3G22845	-0.836216706509808	0.219906962694656	0.00014318940994149	0.00290239318680421	Down	132.04	116.43	72.53	68.80	AT3G22845	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0005793,endoplasmic reticulum-Golgi intermediate compartment; GO:0005794,Golgi apparatus; GO:0006886,intracellular protein transport; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0007030,Golgi organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; GO:0030134,COPII-coated ER to Golgi transport vesicle; GO:0032580,Golgi cisterna membrane; 	--	NP_188924.3 emp24/gp25L/p24 family/GOLD family protein [Arabidopsis thaliana]
AT3G22880	-1.33854720171628	0.543820791709464	0.0138405404356	0.114537627820959	Down	12.53	21.15	6.12	7.46	AT3G22880	GO:0000150,DNA strand exchange activity; GO:0000166,nucleotide binding; GO:0000730,DNA recombinase assembly; GO:0000794,condensed nuclear chromosome; GO:0003677,DNA binding; GO:0003690,double-stranded DNA binding; GO:0003697,single-stranded DNA binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006259,DNA metabolic process; GO:0006281,DNA repair; GO:0006312,mitotic recombination; GO:0006807,nitrogen compound metabolic process; GO:0007049,cell cycle; GO:0007127,meiosis I; GO:0007131,reciprocal meiotic recombination; GO:0008094,ATP-dependent activity, acting on DNA; GO:0042148,strand invasion; GO:0044260,cellular macromolecule metabolic process; GO:0051026,chiasma assembly; GO:0051321,meiotic cell cycle; GO:0070192,chromosome organization involved in meiotic cell cycle; GO:0140664,ATP-dependent DNA damage sensor activity; 	DMC1; meiotic recombination protein DMC1; K10872; 	NP_188928.2 DNA repair (Rad51) family protein [Arabidopsis thaliana]
AT3G22910	-0.846799105054755	0.158827218238799	9.73650020605327e-08	4.55778434173927e-06	Down	63.60	67.20	37.24	36.65	AT3G22910	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005388,P-type calcium transporter activity; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006816,calcium ion transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0070588,calcium ion transmembrane transport; GO:0110165,cellular anatomical entity; 	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]; K01537; 	NP_188931.1 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]
AT3G22930	5.54227916470533	2.2010907188603	0.0118033561694788	1	Up	0.00	0.00	3.16	4.87	AT3G22930	GO:0005509,calcium ion binding; GO:0046872,metal ion binding; 	CML; calcium-binding protein CML; K13448; 	NP_188933.1 calmodulin-like 11 [Arabidopsis thaliana]
AT3G22961	-0.9806941215922	0.481713707047803	0.041765988914658	0.246248618101869	Down	43.93	22.23	16.07	18.08	AT3G22961	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; 	--	NP_001118679.1 Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]
AT3G22970	0.892352479895	0.252632571949007	0.000412094656133944	0.00711682030783216	Up	41.05	30.77	67.00	68.60	AT3G22970	--	--	NP_188937.1 hypothetical protein (DUF506) [Arabidopsis thaliana]
AT3G22980	0.668853508227498	0.296450908951482	0.0240579042777496	0.171122879911402	Up	9.45	9.97	17.49	13.81	AT3G22980	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005525,GTP binding; GO:0005840,ribosome; GO:0042256,mature ribosome assembly; GO:0043022,ribosome binding; GO:1990904,ribonucleoprotein complex; 	RIA1; ribosome assembly protein 1 [EC:3.6.5.-]; K14536; 	NP_001319621.1 Ribosomal protein S5/Elongation factor G/III/V family protein [Arabidopsis thaliana]
AT3G23390	1.19841422819952	0.237906485389878	4.72062712731185e-07	1.93905230179813e-05	Up	143.67	202.44	472.21	332.86	AT3G23390	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L44e, RPL44; large subunit ribosomal protein L44e; K02929; 	NP_188981.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT3G23400	-1.63979238990668	0.320734801794741	3.17735569463506e-07	1.35914128937752e-05	Down	54.91	50.63	18.77	15.51	AT3G23400	GO:0005634,nucleus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010193,response to ozone; GO:0010287,plastoglobule; GO:0031977,thylakoid lumen; GO:0042742,defense response to bacterium; 	--	NP_566728.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]
AT3G23450	-0.586312142465106	0.107558213663916	5.00551165854516e-08	2.48873865894439e-06	Down	482.20	518.04	324.04	353.37	AT3G23450	GO:0003729,mRNA binding; GO:0005576,extracellular region; GO:0043069,negative regulation of programmed cell death; 	--	AAN60357.1 unknown, partial [Arabidopsis thaliana]
AT3G23620	1.0130376350546	0.162095784941856	4.114431596838e-10	3.23034961764401e-08	Up	111.57	122.89	221.39	259.83	AT3G23620	GO:0000027,ribosomal large subunit assembly; GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000470,maturation of LSU-rRNA; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0019843,rRNA binding; GO:0032774,RNA biosynthetic process; 	--	NP_566734.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]
AT3G23727	-2.07284982927027	1.02420747473796	0.0429848309899536	1	Down	21.83	17.54	4.84	4.66	AT3G23727	GO:0005576,extracellular region; GO:0006952,defense response; GO:0007165,signal transduction; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001030752.1 SCR-like 12 [Arabidopsis thaliana]
AT3G23830	0.966312131071294	0.286981568185383	0.000759473080957633	0.0117765794615993	Up	70.12	65.16	147.79	120.33	AT3G23830	GO:0003676,nucleic acid binding; GO:0003690,double-stranded DNA binding; GO:0003697,single-stranded DNA binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0005576,extracellular region; GO:0005615,extracellular space; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006858,extracellular transport; GO:0006970,response to osmotic stress; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0035197,siRNA binding; GO:0035198,miRNA binding; GO:0050658,RNA transport; GO:0050688,regulation of defense response to virus; GO:1900864,mitochondrial RNA modification; GO:1990428,miRNA transport; 	--	NP_189025.1 glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
AT3G23840	-0.891890733533428	0.226879746058006	8.45522539333868e-05	0.00188772581647578	Down	67.52	72.17	39.01	37.44	AT3G23840	GO:0009535,chloroplast thylakoid membrane; GO:0009555,pollen development; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0042761,very long-chain fatty acid biosynthetic process; GO:0071555,cell wall organization; 	--	NP_566741.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]
AT3G24170	-0.902209617586058	0.197523476281248	4.93323808450839e-06	0.000162325778350999	Down	81.38	99.23	50.39	47.72	AT3G24170	GO:0000166,nucleotide binding; GO:0004362,glutathione-disulfide reductase (NADPH) activity; GO:0004791,thioredoxin-disulfide reductase activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006749,glutathione metabolic process; GO:0016491,oxidoreductase activity; GO:0016668,oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor; GO:0045454,cell redox homeostasis; GO:0050660,flavin adenine dinucleotide binding; GO:0050661,NADP binding; GO:0098869,cellular oxidant detoxification; 	GSR, gor; glutathione reductase (NADPH) [EC:1.8.1.7]; K00383; 	NP_001030756.2 glutathione-disulfide reductase [Arabidopsis thaliana]
AT3G25050	-1.14882203165675	0.147581440365566	7.00858706039933e-15	1.38002416641673e-12	Down	304.60	322.10	137.99	149.57	AT3G25050	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005618,cell wall; GO:0005975,carbohydrate metabolic process; GO:0006073,cellular glucan metabolic process; GO:0008152,metabolic process; GO:0009832,plant-type cell wall biogenesis; GO:0010411,xyloglucan metabolic process; GO:0016740,transferase activity; GO:0016762,xyloglucan:xyloglucosyl transferase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030243,cellulose metabolic process; GO:0030247,polysaccharide binding; GO:0042546,cell wall biogenesis; GO:0048046,apoplast; GO:0048573,photoperiodism, flowering; GO:0071555,cell wall organization; 	E2.4.1.207; xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]; K08235; 	NP_189141.1 xyloglucan endotransglucosylase/hydrolase 3 [Arabidopsis thaliana]
AT3G25470	0.664787647070871	0.314283277268554	0.0344086604450496	0.21822056892681	Up	26.64	35.81	56.24	44.05	AT3G25470	GO:0003723,RNA binding; GO:0008168,methyltransferase activity; GO:0032259,methylation; 	--	NP_566765.1 bacterial hemolysin-like protein [Arabidopsis thaliana]
AT3G25810	-1.7030726140126	0.427911202256441	6.89247336953688e-05	0.00161322890847368	Down	22.56	19.20	9.20	3.62	AT3G25810	GO:0000287,magnesium ion binding; GO:0005515,protein binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010333,terpene synthase activity; GO:0010334,sesquiterpene synthase activity; GO:0016102,diterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0034002,(R)-limonene synthase activity; GO:0034768,(E)-beta-ocimene synthase activity; GO:0043693,monoterpene biosynthetic process; GO:0046872,metal ion binding; GO:0050550,pinene synthase activity; GO:0050551,myrcene synthase activity; GO:0050552,(4S)-limonene synthase activity; GO:0080015,sabinene synthase activity; 	E4.2.3.15; myrcene/ocimene synthase [EC:4.2.3.15]; K12467; 	NP_189209.2 Terpenoid cyclases/Protein prenyltransferases superfamily protein [Arabidopsis thaliana]
AT3G25940	2.03695252308182	0.734496170290603	0.00554969070960687	1	Up	11.71	3.58	28.12	36.15	AT3G25940	GO:0000428,DNA-directed RNA polymerase complex; GO:0003676,nucleic acid binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0006363,termination of RNA polymerase I transcription; GO:0006379,mRNA cleavage; GO:0008270,zinc ion binding; GO:0046872,metal ion binding; 	RPA12, ZNRD1; DNA-directed RNA polymerase I subunit RPA12; K03000; 	NP_566786.1 TFIIB zinc-binding protein [Arabidopsis thaliana]
AT3G26040	-1.47063749634091	0.628286195016807	0.0192469699390425	0.145407224174069	Down	9.52	9.49	2.79	4.24	AT3G26040	GO:0008150,biological_process; 	--	NP_189233.1 HXXXD-type acyl-transferase family protein [Arabidopsis thaliana]
AT3G26060	-0.600849487691414	0.180820344170891	0.00089084078785338	0.0134112621035451	Down	197.87	219.01	136.19	143.31	AT3G26060	GO:0003729,mRNA binding; GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008379,thioredoxin peroxidase activity; GO:0009507,chloroplast; GO:0009533,chloroplast stromal thylakoid; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0034599,cellular response to oxidative stress; GO:0045454,cell redox homeostasis; GO:0051920,peroxiredoxin activity; GO:0098869,cellular oxidant detoxification; GO:0140824,thioredoxin-dependent peroxiredoxin activity; 	BCP, PRXQ, DOT5; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]; K03564; 	NP_189235.1 Thioredoxin superfamily protein [Arabidopsis thaliana]
AT3G26110	-0.713909190156842	0.259997035767344	0.00603569485795272	0.0605046335724336	Down	161.64	155.70	101.15	95.28	AT3G26110	GO:0016020,membrane; 	--	KAG7626620.1 hypothetical protein ISN45_At03g027600 [Arabidopsis thaliana x Arabidopsis arenosa]
AT3G26125	-1.18025689742231	0.254217667903638	3.43882016398745e-06	0.000117516705604034	Down	52.45	52.89	19.51	28.01	AT3G26125	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_189243.1 cytochrome P450, family 86, subfamily C, polypeptide 2 [Arabidopsis thaliana]
AT3G26220	5.10834177123211	2.41842639668617	0.034664281238027	1	Up	0.00	0.00	0.67	1.44	AT3G26220	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_189253.1 cytochrome P450, family 71, subfamily B, polypeptide 3 [Arabidopsis thaliana]
AT3G26600	-2.4195930758477	0.179670556538008	2.45163462179866e-41	7.60313187085309e-38	Down	131.09	154.81	26.66	27.70	AT3G26600	GO:0005515,protein binding; GO:0007166,cell surface receptor signaling pathway; GO:0009506,plasmodesma; 	--	NP_001327909.1 armadillo repeat only 4 [Arabidopsis thaliana]
AT3G26650	-0.587858505655133	0.109226389258149	7.36549755392883e-08	3.55521389713958e-06	Down	733.36	618.14	463.25	450.20	AT3G26650	GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0004365,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006006,glucose metabolic process; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0019253,reductive pentose-phosphate cycle; GO:0031969,chloroplast membrane; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0047100,glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity; GO:0048046,apoplast; GO:0050661,NADP binding; GO:0051287,NAD binding; GO:0051289,protein homotetramerization; GO:0097718,disordered domain specific binding; GO:0099080,supramolecular complex; GO:1901149,salicylic acid binding; 	GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13]; K05298; 	NP_566796.2 glyceraldehyde 3-phosphate dehydrogenase A subunit [Arabidopsis thaliana]
AT3G26730	1.58347656167088	0.22865823017673	4.35728876622775e-12	5.09926105142031e-10	Up	14.57	15.90	41.27	51.63	AT3G26730	GO:0000976,transcription cis-regulatory region binding; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding; 	--	NP_189307.2 RING/U-box superfamily protein [Arabidopsis thaliana]
AT3G26840	0.795490150092104	0.249727924189711	0.00144540409646475	0.0196819295462626	Up	19.69	17.48	32.05	33.58	AT3G26840	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005515,protein binding; GO:0006995,cellular response to nitrogen starvation; GO:0008374,O-acyltransferase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0010287,plastoglobule; GO:0010866,regulation of triglyceride biosynthetic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019432,triglyceride biosynthetic process; GO:0033306,phytol metabolic process; GO:0044249,cellular biosynthetic process; GO:0090693,plant organ senescence; GO:1901576,organic substance biosynthetic process; GO:1904963,regulation of phytol biosynthetic process; 	--	NP_566801.1 Esterase/lipase/thioesterase family protein [Arabidopsis thaliana]
AT3G26890	0.792452937107447	0.25128985445841	0.00161302396419912	0.0213806693868708	Up	19.58	21.52	39.28	32.93	AT3G26890	GO:0008150,biological_process; 	--	NP_001030777.1 meiosis chromosome segregation family protein [Arabidopsis thaliana]
AT3G26950	-1.27251560924411	0.581598486674654	0.0286723427279531	0.1941486962556	Down	6.97	10.48	3.89	3.42	AT3G26950	GO:0003674,molecular_function; GO:0016020,membrane; 	--	NP_189331.2 transmembrane protein [Arabidopsis thaliana]
AT3G27180	0.855524729881861	0.39921373512289	0.0321111482712667	0.208586979954478	Up	8.73	11.74	15.17	22.57	AT3G27180	GO:0001510,RNA methylation; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; 	--	NP_189354.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT3G27230	-0.716784104827833	0.352296779955278	0.0418908297181936	0.246750115220414	Down	28.50	25.90	14.78	19.00	AT3G27230	GO:0000138,Golgi trans cisterna; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0032259,methylation; 	--	NP_566813.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT3G27340	2.0901961732098	1.02357831943029	0.0411467592640717	1	Up	1.36	3.48	9.12	11.72	AT3G27340	GO:0046872,metal ion binding; 	--	NP_001325872.1 Myb domain protein [Arabidopsis thaliana]
AT3G27360	-0.637798455865136	0.187876438218156	0.000686847278139169	0.0108799182055071	Down	355.14	335.82	200.33	252.27	AT3G27360	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0010369,chromocenter; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; 	H3; histone H3; K11253; 	NP_001131276.1 histone H3.2 [Zea mays]
AT3G27380	-0.74038473728766	0.227078354041061	0.00111223283283341	0.0159138360686304	Down	111.29	107.29	75.12	57.33	AT3G27380	GO:0000104,succinate dehydrogenase activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0006099,tricarboxylic acid cycle; GO:0006121,mitochondrial electron transport, succinate to ubiquinone; GO:0008177,succinate dehydrogenase (ubiquinone) activity; GO:0008270,zinc ion binding; GO:0009055,electron transfer activity; GO:0009060,aerobic respiration; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0022900,electron transport chain; GO:0022904,respiratory electron transport chain; GO:0045273,respiratory chain complex II; GO:0045281,succinate dehydrogenase complex; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0051538,3 iron, 4 sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; 	SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]; K00235; 	NP_001118718.1 succinate dehydrogenase 2-1 [Arabidopsis thaliana]
AT3G27400	0.964101376836314	0.444077177520737	0.0299295000874069	0.199458295814599	Up	7.68	10.50	19.96	15.95	AT3G27400	GO:0005829,cytosol; GO:0009624,response to nematode; GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; 	pel; pectate lyase [EC:4.2.2.2]; K01728; 	NP_001326295.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT3G27520	1.58892361282869	0.700069836747097	0.0232279506396836	1	Up	5.89	5.61	22.61	12.35	AT3G27520	--	--	NP_566819.1 cryptic loci regulator [Arabidopsis thaliana]
AT3G27550	1.12024456717909	0.48180805878923	0.0200674292293798	0.149871438645669	Up	5.42	6.74	17.45	9.24	AT3G27550	GO:0000373,Group II intron splicing; GO:0003674,molecular_function; GO:0003723,RNA binding; GO:0005739,mitochondrion; GO:0006397,mRNA processing; GO:0008380,RNA splicing; GO:0009414,response to water deprivation; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0140040,mitochondrial polycistronic RNA processing; GO:1990904,ribonucleoprotein complex; 	--	NP_001327916.1 RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
AT3G27640	1.66664399393445	0.78734389141752	0.0342774244573476	1	Up	1.31	1.76	5.04	4.86	AT3G27640	GO:0005515,protein binding; GO:0005634,nucleus; GO:0030674,protein-macromolecule adaptor activity; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_566822.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT3G27690	-0.864142268472948	0.124501949642801	3.89904810692674e-12	4.60644683489773e-10	Down	443.51	443.53	259.58	235.04	AT3G27690	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009269,response to desiccation; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0009941,chloroplast envelope; GO:0010114,response to red light; GO:0010218,response to far red light; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0030104,water homeostasis; GO:0046872,metal ion binding; GO:0071215,cellular response to abscisic acid stimulus; GO:0090333,regulation of stomatal closure; GO:1903428,positive regulation of reactive oxygen species biosynthetic process; 	LHCB2; light-harvesting complex II chlorophyll a/b binding protein 2; K08913; 	NP_001325794.1 photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]
AT3G27740	0.722138078887383	0.217407241144862	0.000895055785513332	0.0134258367827	Up	44.39	41.22	75.95	67.44	AT3G27740	GO:0000166,nucleotide binding; GO:0004088,carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005951,carbamoyl-phosphate synthase complex; GO:0006207,'de novo' pyrimidine nucleobase biosynthetic process; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0006526,arginine biosynthetic process; GO:0006541,glutamine metabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016036,cellular response to phosphate starvation; GO:0016874,ligase activity; GO:0044205,'de novo' UMP biosynthetic process; 	carA, CPA1; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]; K01956; 	NP_566824.1 carbamoyl phosphate synthetase A [Arabidopsis thaliana]
AT3G27770	-1.16550397993051	0.591874719183705	0.0489331771541168	0.273040813019249	Down	12.11	15.21	6.41	5.95	AT3G27770	GO:0016020,membrane; 	--	NP_566825.1 plant/protein [Arabidopsis thaliana]
AT3G28130	-1.69750493137233	0.812257988430125	0.0366304383383124	1	Down	9.75	6.29	1.22	3.93	AT3G28130	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_001325436.1 nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]
AT3G28750	-2.10500305216877	0.599173358022622	0.000442779646679451	0.00758719018853009	Down	19.41	17.73	6.40	2.16	AT3G28750	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_189517.1 hypothetical protein AT3G28750 [Arabidopsis thaliana]
AT3G28780	-0.706639465141809	0.227022130548484	0.00185418446464818	0.0238013124081937	Down	39.45	43.49	26.33	25.28	AT3G28780	GO:0003674,molecular_function; GO:0010584,pollen exine formation; 	--	NP_189520.2 transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]
AT3G28790	-0.905821509466244	0.161475309965761	2.02725061053969e-08	1.11274530193562e-06	Down	114.39	136.15	65.94	70.05	AT3G28790	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_189521.1 transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]
AT3G28810	-0.881968710501468	0.298043448319538	0.00308443761957303	0.0354939227001887	Down	35.19	43.81	20.69	22.94	AT3G28810	GO:0008150,biological_process; 	--	NP_189523.1 mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]
AT3G28910	0.931089217497853	0.457027153466694	0.0416226618420508	0.245871009595543	Up	12.53	9.54	23.95	18.74	AT3G28910	GO:0000976,transcription cis-regulatory region binding; GO:0001666,response to hypoxia; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006952,defense response; GO:0009617,response to bacterium; GO:0009626,plant-type hypersensitive response; GO:0009644,response to high light intensity; GO:0009733,response to auxin; GO:0010100,negative regulation of photomorphogenesis; GO:0042761,very long-chain fatty acid biosynthetic process; GO:1990837,sequence-specific double-stranded DNA binding; 	MYB30; transcription factor MYB30; K23865; 	NP_189533.1 myb domain protein 30 [Arabidopsis thaliana]
AT3G28960	-1.99724989624206	0.967411024004401	0.0389674127296651	1	Down	4.81	5.07	1.11	1.42	AT3G28960	GO:0000325,plant-type vacuole; GO:0003333,amino acid transmembrane transport; GO:0006865,amino acid transport; GO:0008150,biological_process; GO:0015171,amino acid transmembrane transporter activity; GO:0016020,membrane; 	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter); K15015; 	NP_001319665.1 Transmembrane amino acid transporter family protein [Arabidopsis thaliana]
AT3G29020	5.29153043696728	2.33148864559391	0.0232322854217307	1	Up	0.00	0.00	0.98	2.52	AT3G29020	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; 	--	NP_001078220.1 myb domain protein 110 [Arabidopsis thaliana]
AT3G29110	1.17418580713816	0.220526665661615	1.0125237676478e-07	4.72193884874848e-06	Up	31.58	25.64	58.69	72.79	AT3G29110	GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0008299,isoprenoid biosynthetic process; GO:0009975,cyclase activity; GO:0010333,terpene synthase activity; GO:0016102,diterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0046872,metal ion binding; GO:0051762,sesquiterpene biosynthetic process; 	--	NP_189555.2 Terpenoid cyclases/Protein prenyltransferases superfamily protein [Arabidopsis thaliana]
AT3G29190	2.27497525478207	0.765351332315249	0.00295424917002769	1	Up	1.69	0.86	3.74	8.89	AT3G29190	GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0008299,isoprenoid biosynthetic process; GO:0009975,cyclase activity; GO:0010333,terpene synthase activity; GO:0016102,diterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0046872,metal ion binding; GO:0051762,sesquiterpene biosynthetic process; 	--	BAB01815.1 terpene cyclase (terpene synthase) [Arabidopsis thaliana]
AT3G30770	5.67769591706778	2.16786566012631	0.00881812991438187	1	Up	0.00	0.00	1.86	0.72	AT3G30770	GO:0004816,asparagine-tRNA ligase activity; GO:0005739,mitochondrion; GO:0006421,asparaginyl-tRNA aminoacylation; GO:0006508,proteolysis; GO:0008233,peptidase activity; 	--	NP_189700.4 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT3G42960	-0.97311052798497	0.319472443600197	0.00231913955989388	0.0285123154018668	Down	50.35	70.74	28.43	34.43	AT3G42960	GO:0005575,cellular_component; GO:0016491,oxidoreductase activity; GO:0042802,identical protein binding; 	--	NP_189882.1 TAPETUM 1 [Arabidopsis thaliana]
AT3G43083	-2.10434516913886	1.01470394152153	0.0380931157007678	1	Down	27.68	20.64	4.27	7.32	AT3G43083	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001030801.1 low-molecular-weight cysteine-rich 33 [Arabidopsis thaliana]
AT3G43540	0.845221457448548	0.326810795936561	0.00970204665676878	0.0874029693371218	Up	18.07	19.19	35.97	31.95	AT3G43540	GO:0003674,molecular_function; GO:0003743,translation initiation factor activity; GO:0006413,translational initiation; GO:0008150,biological_process; GO:0009507,chloroplast; 	--	NP_974379.1 initiation factor 4F subunit (DUF1350) [Arabidopsis thaliana]
AT3G43710	-3.52668957958421	1.20457494817582	0.00341428759610443	1	Down	4.12	7.47	0.30	0.76	AT3G43710	GO:0005515,protein binding; 	--	NP_189957.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]
AT3G43810	-0.634715724664936	0.15802188385293	5.90358513006501e-05	0.00141967133406605	Down	331.76	289.64	207.98	198.52	AT3G43810	GO:0005509,calcium ion binding; GO:0005513,detection of calcium ion; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0010099,regulation of photomorphogenesis; GO:0016020,membrane; GO:0046872,metal ion binding; GO:0050832,defense response to fungus; 	CALM; calmodulin; K02183; 	NP_001326523.1 calmodulin 7 [Arabidopsis thaliana]
AT3G43980	1.25434539529891	0.263735319027277	1.97391537613423e-06	7.20420543337033e-05	Up	164.41	164.14	400.60	395.76	AT3G43980	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0008270,zinc ion binding; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S29e, RPS29; small subunit ribosomal protein S29e; K02980; 	NP_001319679.1 Ribosomal protein S14p/S29e family protein [Arabidopsis thaliana]
AT3G44010	1.03407785180503	0.159370461700141	8.66857316941376e-11	7.96545556789464e-09	Up	733.01	822.21	1805.64	1425.75	AT3G44010	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0008270,zinc ion binding; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S29e, RPS29; small subunit ribosomal protein S29e; K02980; 	NP_001319679.1 Ribosomal protein S14p/S29e family protein [Arabidopsis thaliana]
AT3G44300	1.69307063538783	0.480955129494422	0.00043117962631385	0.00740828706983839	Up	9.88	5.55	31.10	19.56	AT3G44300	GO:0000257,nitrilase activity; GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006807,nitrogen compound metabolic process; GO:0009684,indoleacetic acid biosynthetic process; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016836,hydro-lyase activity; GO:0018822,nitrile hydratase activity; GO:0047427,cyanoalanine nitrilase activity; GO:0051410,detoxification of nitrogen compound; GO:0080061,indole-3-acetonitrile nitrilase activity; GO:0080109,indole-3-acetonitrile nitrile hydratase activity; 	E3.5.5.1; nitrilase [EC:3.5.5.1]; K01501; 	NP_190016.1 nitrilase 2 [Arabidopsis thaliana]
AT3G44620	0.900936146436218	0.259827083877999	0.000525431077940074	0.00873722858156383	Up	40.98	53.20	86.82	91.82	AT3G44620	GO:0003993,acid phosphatase activity; GO:0004725,protein tyrosine phosphatase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006470,protein dephosphorylation; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0016791,phosphatase activity; 	--	NP_190048.2 protein-tyrosine phosphatase [Arabidopsis thaliana]
AT3G44720	-0.790170345245521	0.351781754614789	0.0246915336649677	0.174108542397408	Down	25.17	32.92	14.56	19.73	AT3G44720	GO:0004664,prephenate dehydratase activity; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009094,L-phenylalanine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0047769,arogenate dehydratase activity; 	ADT, PDT; arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51]; K05359; 	NP_190058.1 arogenate dehydratase 4 [Arabidopsis thaliana]
AT3G44750	0.65202046087023	0.167052522315456	9.49737027782587e-05	0.0020545210116674	Up	153.02	144.45	222.22	253.35	AT3G44750	GO:0004407,histone deacetylase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006325,chromatin organization; GO:0009294,DNA-mediated transformation; GO:0009944,polarity specification of adaxial/abaxial axis; GO:0010162,seed dormancy process; GO:0016570,histone modification; GO:0016787,hydrolase activity; GO:0045892,negative regulation of DNA-templated transcription; GO:0046872,metal ion binding; GO:0048364,root development; 	--	NP_566872.1 histone deacetylase 3 [Arabidopsis thaliana]
AT3G44890	-0.78635714545862	0.309133191966671	0.0109669963842024	0.0963290672081388	Down	78.10	84.97	56.81	38.71	AT3G44890	GO:0000311,plastid large ribosomal subunit; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L9, MRPL9, rplI; large subunit ribosomal protein L9; K02939; 	NP_190075.1 ribosomal protein L9 [Arabidopsis thaliana]
AT3G44920	0.770609765145063	0.376146635444404	0.040491939634938	0.242892897084819	Up	9.96	7.01	11.48	18.08	AT3G44920	GO:0006811,ion transport; GO:0006812,cation transport; GO:0006813,potassium ion transport; GO:0006885,regulation of pH; GO:0012505,endomembrane system; GO:0015297,antiporter activity; GO:0015299,solute:proton antiporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0055085,transmembrane transport; GO:1902600,proton transmembrane transport; 	--	NP_190078.2 cation/H+ exchanger 11 [Arabidopsis thaliana]
AT3G45040	-1.47721203606497	0.272567632812819	5.97270235434844e-08	2.92851275516571e-06	Down	38.15	42.80	14.02	15.59	AT3G45040	GO:0004168,dolichol kinase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006486,protein glycosylation; GO:0009555,pollen development; GO:0010483,pollen tube reception; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0043048,dolichyl monophosphate biosynthetic process; 	DOLK; dolichol kinase [EC:2.7.1.108]; K00902; 	NP_190090.2 phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana]
AT3G45300	-0.620657975969406	0.272805084301543	0.022900123230195	0.164872912751346	Down	43.43	46.90	32.37	27.16	AT3G45300	GO:0003824,catalytic activity; GO:0003995,acyl-CoA dehydrogenase activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006552,leucine catabolic process; GO:0008470,isovaleryl-CoA dehydrogenase activity; GO:0009083,branched-chain amino acid catabolic process; GO:0010230,alternative respiration; GO:0016491,oxidoreductase activity; GO:0016627,oxidoreductase activity, acting on the CH-CH group of donors; GO:0050660,flavin adenine dinucleotide binding; GO:1901565,organonitrogen compound catabolic process; 	IVD, ivd; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]; K00253; 	NP_190116.1 isovaleryl-CoA-dehydrogenase [Arabidopsis thaliana]
AT3G45640	0.631978976733302	0.297859372538355	0.0338599072048651	0.215732998909271	Up	26.10	31.47	52.15	38.20	AT3G45640	GO:0000165,MAPK cascade; GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004707,MAP kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005938,cell cortex; GO:0006468,protein phosphorylation; GO:0006952,defense response; GO:0006970,response to osmotic stress; GO:0006979,response to oxidative stress; GO:0009409,response to cold; GO:0009555,pollen development; GO:0009611,response to wounding; GO:0009617,response to bacterium; GO:0009626,plant-type hypersensitive response; GO:0009738,abscisic acid-activated signaling pathway; GO:0009875,pollen-pistil interaction; GO:0010120,camalexin biosynthetic process; GO:0010183,pollen tube guidance; GO:0010200,response to chitin; GO:0010224,response to UV-B; GO:0010229,inflorescence development; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; GO:0048481,plant ovule development; GO:0050826,response to freezing; GO:0080136,priming of cellular response to stress; GO:0106310,protein serine kinase activity; GO:1902065,response to L-glutamate; 	MPK3; mitogen-activated protein kinase 3 [EC:2.7.11.24]; K20536; 	NP_190150.1 mitogen-activated protein kinase 3 [Arabidopsis thaliana]
AT3G45730	5.13533667479054	1.80976963540158	0.00454592707811227	1	Up	1.07	0.00	20.03	19.81	AT3G45730	--	--	NP_190159.1 hypothetical protein AT3G45730 [Arabidopsis thaliana]
AT3G45970	-0.664659182982166	0.182692102849606	0.000274615685255277	0.00504682603791365	Down	193.75	182.53	106.31	135.63	AT3G45970	GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009653,anatomical structure morphogenesis; GO:0016020,membrane; GO:0099503,secretory vesicle; 	--	NP_190183.1 expansin-like A1 [Arabidopsis thaliana]
AT3G45980	-0.653240943797964	0.192870399586689	0.000706762116607484	0.0110979545019188	Down	319.11	260.92	194.42	180.04	AT3G45980	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006334,nucleosome assembly; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; 	H2B; histone H2B; K11252; 	XP_010503210.1 PREDICTED: histone H2B.6 isoform X1 [Camelina sativa]
AT3G46030	-0.80962923708932	0.183568443827278	1.03130608827063e-05	0.000310518253033913	Down	309.18	320.41	181.82	183.23	AT3G46030	GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005829,cytosol; GO:0006334,nucleosome assembly; GO:0009506,plasmodesma; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; 	H2B; histone H2B; K11252; 	NP_190189.1 Histone superfamily protein [Arabidopsis thaliana]
AT3G46040	0.750223667910882	0.168297180612715	8.28315058123231e-06	0.000255603191443251	Up	246.81	258.16	451.65	410.63	AT3G46040	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S15Ae, RPS15A; small subunit ribosomal protein S15Ae; K02957; 	NP_190190.1 ribosomal protein S15A D [Arabidopsis thaliana]
AT3G46210	1.48098274998973	0.376039136582115	8.20356622910209e-05	0.00184612989307559	Up	20.50	15.02	54.37	46.39	AT3G46210	GO:0000176,nuclear exosome (RNase complex); GO:0000177,cytoplasmic exosome (RNase complex); GO:0000178,exosome (RNase complex); GO:0003674,molecular_function; GO:0003690,double-stranded DNA binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004536,deoxyribonuclease activity; GO:0004540,ribonuclease activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006259,DNA metabolic process; GO:0006364,rRNA processing; GO:0016075,rRNA catabolic process; GO:0016787,hydrolase activity; GO:0034427,nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'; GO:0034475,U4 snRNA 3'-end processing; GO:0042802,identical protein binding; GO:0071028,nuclear mRNA surveillance; GO:0071051,polyadenylation-dependent snoRNA 3'-end processing; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1990904,ribonucleoprotein complex; 	RRP46, EXOSC5; exosome complex component RRP46; K12590; 	NP_001030817.1 Ribosomal protein S5 domain 2-like superfamily protein [Arabidopsis thaliana]
AT3G46520	-0.639079421848226	0.223537907689075	0.00425071424983584	0.0459721972704565	Down	85.33	87.65	47.91	65.42	AT3G46520	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0007010,cytoskeleton organization; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016787,hydrolase activity; 	--	NP_001327017.1 actin-12 [Arabidopsis thaliana]
AT3G47070	-0.700383626249922	0.337866948775122	0.038176289885932	0.232601609054512	Down	114.44	130.88	86.87	65.86	AT3G47070	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; 	--	NP_190291.1 thylakoid soluble phosphoprotein [Arabidopsis thaliana]
AT3G47430	3.74052262997395	1.59171023612705	0.0187732977867477	1	Up	0.34	0.38	3.45	6.34	AT3G47430	GO:0005515,protein binding; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0005779,integral component of peroxisomal membrane; GO:0005829,cytosol; GO:0007031,peroxisome organization; GO:0016020,membrane; GO:0016559,peroxisome fission; GO:0042802,identical protein binding; GO:0044375,regulation of peroxisome size; 	--	NP_190327.1 peroxin 11B [Arabidopsis thaliana]
AT3G47470	-1.03469821817026	0.100262733303853	5.73016130684007e-25	3.26013616351161e-22	Down	2030.20	2110.46	947.17	1108.06	AT3G47470	GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; 	LHCA4; light-harvesting complex I chlorophyll a/b binding protein 4; K08910; 	NP_190331.3 light-harvesting chlorophyll-protein complex I subunit A4 [Arabidopsis thaliana]
AT3G47610	1.00936042151376	0.425071951902574	0.0175697049028425	0.136904641532514	Up	8.40	10.91	20.35	19.09	AT3G47610	GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0045893,positive regulation of DNA-templated transcription; 	--	NP_190345.1 transcription regulator/ zinc ion binding protein [Arabidopsis thaliana]
AT3G47890	0.732492408149736	0.347279519610892	0.034924726891812	0.220132418283702	Up	3.98	5.53	6.95	9.12	AT3G47890	GO:0004843,cysteine-type deubiquitinase activity; GO:0005515,protein binding; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; 	--	NP_001319705.1 Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]
AT3G48231	-3.90738030367496	1.00256846059482	9.72429668959828e-05	1	Down	55.92	34.97	4.17	1.79	AT3G48231	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001030830.1 low-molecular-weight cysteine-rich 48 [Arabidopsis thaliana]
AT3G48290	-0.992296474584478	0.365025845218504	0.00655929317668775	0.064542034235619	Down	19.26	29.50	12.01	12.92	AT3G48290	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_001190031.2 cytochrome P450, family 71, subfamily A, polypeptide 24 [Arabidopsis thaliana]
AT3G48420	-0.969871131778351	0.356786856623592	0.00656086297227856	0.064542034235619	Down	32.95	40.24	18.98	18.98	AT3G48420	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	--	NP_566903.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]
AT3G48640	-3.02051783072472	0.827369554498171	0.000261477590992573	1	Down	12.15	24.03	2.00	2.57	AT3G48640	GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_001319710.1 transmembrane protein [Arabidopsis thaliana]
AT3G48660	2.89949220898103	1.24160671376265	0.0195290975489782	1	Up	3.47	0.95	22.50	11.25	AT3G48660	GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_190435.1 transmembrane protein, putative (DUF 3339) [Arabidopsis thaliana]
AT3G48690	-0.762167993933589	0.269332050521162	0.00465705396171487	0.0492504300043247	Down	62.72	60.22	40.49	32.93	AT3G48690	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity; 	--	NP_190438.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT3G48730	-0.921010468432882	0.156349113288426	3.84492482131267e-09	2.52361335494094e-07	Down	150.74	170.40	85.85	86.52	AT3G48730	GO:0003824,catalytic activity; GO:0005829,cytosol; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0006782,protoporphyrinogen IX biosynthetic process; GO:0008483,transaminase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016853,isomerase activity; GO:0030170,pyridoxal phosphate binding; GO:0033014,tetrapyrrole biosynthetic process; GO:0042286,glutamate-1-semialdehyde 2,1-aminomutase activity; GO:0042803,protein homodimerization activity; 	hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]; K01845; 	NP_190442.1 glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana]
AT3G48760	0.794106845472123	0.267965744944638	0.00304197615747528	0.035201225964068	Up	23.25	22.85	40.32	40.93	AT3G48760	GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006612,protein targeting to membrane; GO:0016020,membrane; GO:0016409,palmitoyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0018230,peptidyl-L-cysteine S-palmitoylation; GO:0019706,protein-cysteine S-palmitoyltransferase activity; 	--	NP_190445.2 DHHC-type zinc finger family protein [Arabidopsis thaliana]
AT3G48770	0.792905779123739	0.294201154567321	0.00703644600496033	0.06819305679026	Up	4.48	5.29	8.58	8.60	AT3G48770	GO:0003677,DNA binding; GO:0008150,biological_process; GO:0046872,metal ion binding; 	--	NP_001319711.1 ATP/DNA binding protein [Arabidopsis thaliana]
AT3G48890	-0.640801919562802	0.218351355046342	0.00333839774604757	0.037854500950384	Down	123.15	138.66	89.41	80.95	AT3G48890	GO:0005496,steroid binding; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008289,lipid binding; GO:0009535,chloroplast thylakoid membrane; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0019904,protein domain specific binding; 	--	NP_190458.1 membrane-associated progesterone binding protein 3 [Arabidopsis thaliana]
AT3G48930	1.06533248173506	0.14498997096729	2.01753902086915e-13	3.08982364862739e-11	Up	458.88	573.66	1224.03	970.02	AT3G48930	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S11e, RPS11; small subunit ribosomal protein S11e; K02949; 	NP_190462.1 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
AT3G48950	-2.95751013598577	1.3273748355297	0.0258745371723333	1	Down	4.32	2.01	0.24	0.62	AT3G48950	GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity; 	--	NP_001319713.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT3G48990	-0.700234011660085	0.168616261224889	3.28394285608079e-05	0.00085943694366418	Down	108.88	105.67	64.43	69.92	AT3G48990	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006631,fatty acid metabolic process; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0010030,positive regulation of seed germination; GO:0010214,seed coat development; GO:0016874,ligase activity; GO:0031956,medium-chain fatty acid-CoA ligase activity; GO:0033611,oxalate catabolic process; GO:0048046,apoplast; GO:0050203,oxalate-CoA ligase activity; GO:0050832,defense response to fungus; 	AAE3; oxalate---CoA ligase [EC:6.2.1.8]; K22133; 	NP_190468.1 AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]
AT3G49010	0.760608499554462	0.113933617149857	2.4573323809753e-11	2.43869329086082e-09	Up	522.91	514.60	948.77	836.19	AT3G49010	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L13e, RPL13; large subunit ribosomal protein L13e; K02873; 	NP_001030831.1 breast basic conserved 1 [Arabidopsis thaliana]
AT3G49330	-4.61567407297585	2.33031681479762	0.047624177627059	1	Down	3.40	2.07	0.00	0.00	AT3G49330	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; 	--	NP_001327755.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT3G49480	-3.17907260237791	0.707471378432771	7.00387792827453e-06	0.000221353403969916	Down	10.76	16.02	2.25	0.64	AT3G49480	GO:0005515,protein binding; 	--	NP_001327389.1 F-box/FBD/LRR protein [Arabidopsis thaliana]
AT3G49580	2.09693760805126	1.02758540914083	0.0412860696475107	1	Up	3.58	3.94	10.32	22.55	AT3G49580	GO:0005515,protein binding; GO:0009651,response to salt stress; GO:0010438,cellular response to sulfur starvation; GO:0098869,cellular oxidant detoxification; 	--	NP_001327932.1 response to low sulfur 1 [Arabidopsis thaliana]
AT3G49800	-0.666088847509972	0.31993792144129	0.0373487239519665	0.229240094219721	Down	39.14	29.81	25.43	18.54	AT3G49800	--	--	NP_190549.1 BSD domain-containing protein [Arabidopsis thaliana]
AT3G49910	0.822363988675835	0.0992675171796893	1.18784709165785e-16	3.20331373304687e-14	Up	1433.36	1287.53	2546.54	2341.21	AT3G49910	GO:0000325,plant-type vacuole; GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042273,ribosomal large subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L26e, RPL26; large subunit ribosomal protein L26e; K02898; 	NP_190560.1 Translation protein SH3-like family protein [Arabidopsis thaliana]
AT3G49990	0.69442444439889	0.182224120931366	0.000138503150358197	0.00282309487138824	Up	53.57	56.83	87.88	93.72	AT3G49990	GO:0000056,ribosomal small subunit export from nucleus; GO:0005634,nucleus; GO:0005829,cytosol; GO:0030688,preribosome, small subunit precursor; GO:0042274,ribosomal small subunit biogenesis; 	--	NP_190568.1 Low temperature viability protein [Arabidopsis thaliana]
AT3G50410	0.839987124365896	0.333704676399952	0.0118306035868404	0.101492833675487	Up	25.52	28.39	49.60	48.39	AT3G50410	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009733,response to auxin; GO:0009751,response to salicylic acid; GO:0042545,cell wall modification; GO:0045787,positive regulation of cell cycle; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; 	--	NP_190610.1 OBF binding protein 1 [Arabidopsis thaliana]
AT3G50820	-0.801708544150407	0.110046948230719	3.21312181917634e-13	4.59591334325162e-11	Down	561.26	550.95	316.78	331.89	AT3G50820	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0010205,photoinhibition; GO:0010207,photosystem II assembly; GO:0010242,oxygen evolving activity; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019684,photosynthesis, light reaction; GO:0031977,thylakoid lumen; GO:0035304,regulation of protein dephosphorylation; GO:0042549,photosystem II stabilization; 	psbO; photosystem II oxygen-evolving enhancer protein 1; K02716; 	NP_190651.1 photosystem II subunit O-2 [Arabidopsis thaliana]
AT3G50880	0.7390259320344	0.236016595433948	0.0017406650820047	0.0226816705275928	Up	55.29	60.15	106.74	88.66	AT3G50880	GO:0003824,catalytic activity; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006284,base-excision repair; GO:0006285,base-excision repair, AP site formation; GO:0006307,DNA dealkylation involved in DNA repair; GO:0008152,metabolic process; GO:0008725,DNA-3-methyladenine glycosylase activity; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0032131,alkylated DNA binding; GO:0032993,protein-DNA complex; GO:0043916,DNA-7-methylguanine glycosylase activity; 	alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]; K01247; 	NP_190657.1 DNA glycosylase superfamily protein [Arabidopsis thaliana]
AT3G51000	-0.859669300899433	0.192507419742051	7.98288441460662e-06	0.000247569202907988	Down	132.81	127.43	70.48	75.43	AT3G51000	GO:0003824,catalytic activity; GO:0016787,hydrolase activity; 	--	NP_190669.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT3G51030	-1.14682180574809	0.570521488719699	0.0444175344729235	0.25699604250775	Down	44.14	36.57	20.54	16.35	AT3G51030	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008047,enzyme activator activity; GO:0015035,protein-disulfide reductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0043085,positive regulation of catalytic activity; 	trxA; thioredoxin 1; K03671; 	NP_190672.1 thioredoxin H-type 1 [Arabidopsis thaliana]
AT3G51070	-1.0716952551284	0.349548044554309	0.00216982859819122	0.0269604388916531	Down	17.05	14.93	9.72	5.61	AT3G51070	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0008168,methyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; 	--	NP_190676.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT3G51160	-0.896408010914221	0.231632038588317	0.000108850731091868	0.00231214609451135	Down	84.57	86.52	39.70	54.13	AT3G51160	GO:0000166,nucleotide binding; GO:0005525,GTP binding; GO:0005829,cytosol; GO:0008446,GDP-mannose 4,6-dehydratase activity; GO:0009826,unidimensional cell growth; GO:0016829,lyase activity; GO:0019673,GDP-mannose metabolic process; GO:0042350,GDP-L-fucose biosynthetic process; GO:0042351,'de novo' GDP-L-fucose biosynthetic process; 	gmd, GMDS; GDPmannose 4,6-dehydratase [EC:4.2.1.47]; K01711; 	NP_190685.2 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT3G51280	-0.63648639837959	0.274741051650567	0.0205213089633715	0.152070990257242	Down	41.31	41.03	27.92	25.83	AT3G51280	GO:0005515,protein binding; GO:0005634,nucleus; GO:0007049,cell cycle; GO:0051301,cell division; 	--	NP_190696.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
AT3G51590	-0.636684492095256	0.202773747813347	0.0016901916706093	0.0221254163792163	Down	343.62	331.90	191.22	251.85	AT3G51590	GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0009505,plant-type cell wall; 	--	NP_190727.1 lipid transfer protein 12 [Arabidopsis thaliana]
AT3G51800	0.650054688038332	0.148376374329062	1.18070866320158e-05	0.000350399305430996	Up	123.75	146.47	221.61	208.99	AT3G51800	GO:0001558,regulation of cell growth; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006364,rRNA processing; GO:0009734,auxin-activated signaling pathway; GO:0044843,cell cycle G1/S phase transition; GO:0051302,regulation of cell division; GO:1990904,ribonucleoprotein complex; 	--	NP_190748.1 metallopeptidase M24 family protein [Arabidopsis thaliana]
AT3G52090	0.643388850515424	0.258956118660377	0.0129716098345516	0.109093437286517	Up	84.47	87.00	135.44	136.73	AT3G52090	GO:0000418,RNA polymerase IV complex; GO:0000419,RNA polymerase V complex; GO:0000428,DNA-directed RNA polymerase complex; GO:0001055,RNA polymerase II activity; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005665,RNA polymerase II, core complex; GO:0006351,DNA-templated transcription; GO:0006366,transcription by RNA polymerase II; GO:0046983,protein dimerization activity; 	RPB11, POLR2J; DNA-directed RNA polymerase II subunit RPB11; K03008; 	NP_190777.1 DNA-directed RNA polymerase, RBP11-like protein [Arabidopsis thaliana]
AT3G52130	-1.74350315297101	0.443044109973051	8.30993440638517e-05	0.00186073531247668	Down	74.35	76.91	27.00	18.51	AT3G52130	GO:0016020,membrane; 	--	NP_001319728.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT3G52150	-0.849433054615966	0.21761790584545	9.48808047523987e-05	0.0020545210116674	Down	135.59	124.02	68.20	78.56	AT3G52150	GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003697,single-stranded DNA binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009651,response to salt stress; GO:0009941,chloroplast envelope; GO:0010029,regulation of seed germination; GO:0019843,rRNA binding; GO:0080148,negative regulation of response to water deprivation; GO:1900140,regulation of seedling development; GO:1901001,negative regulation of response to salt stress; GO:1901259,chloroplast rRNA processing; GO:1990904,ribonucleoprotein complex; 	PABPC; polyadenylate-binding protein; K13126; 	NP_001030841.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]
AT3G52160	-1.18507649090689	0.375317390750173	0.00159111034889071	0.0211778153197309	Down	24.36	24.12	10.20	11.52	AT3G52160	GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity; 	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397; 	ABK28598.1 unknown, partial [Arabidopsis thaliana]
AT3G52230	0.877110148399799	0.243781798193899	0.000320758381367851	0.00575833244698726	Up	110.73	85.25	185.67	180.26	AT3G52230	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009707,chloroplast outer membrane; GO:0009941,chloroplast envelope; 	--	NP_566963.1 hypothetical protein AT3G52230 [Arabidopsis thaliana]
AT3G52526	5.1876429462857	1.80595273648536	0.004072068851494	1	Up	0.00	0.52	12.37	6.18	AT3G52526	GO:0005982,starch metabolic process; GO:0007623,circadian rhythm; GO:0016020,membrane; GO:0019203,carbohydrate phosphatase activity; 	--	NP_001327384.1 phosphoglucan phosphatase [Arabidopsis thaliana]
AT3G52590	0.934980426030913	0.138892857183628	1.67730478654058e-11	1.76330219296914e-09	Up	503.69	563.58	1139.65	931.52	AT3G52590	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0016567,protein ubiquitination; GO:0019941,modification-dependent protein catabolic process; GO:0022625,cytosolic large ribosomal subunit; GO:0031386,protein tag; GO:0031625,ubiquitin protein ligase binding; GO:1990904,ribonucleoprotein complex; 	RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e; K02927; 	NP_565836.1 60S ribosomal protein L40-1 [Arabidopsis thaliana]
AT3G53020	0.627267953168489	0.127673693423161	8.96678396432536e-07	3.4760298461705e-05	Up	478.10	474.19	797.67	695.69	AT3G53020	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005840,ribosome; GO:0009734,auxin-activated signaling pathway; GO:0009955,adaxial/abaxial pattern specification; GO:0009965,leaf morphogenesis; GO:0022625,cytosolic large ribosomal subunit; GO:0048467,gynoecium development; GO:1990904,ribonucleoprotein complex; 	RP-L24e, RPL24; large subunit ribosomal protein L24e; K02896; 	NP_190870.1 Ribosomal protein L24e family protein [Arabidopsis thaliana]
AT3G53040	-2.39150072689886	1.11121076934828	0.0313849420782451	1	Down	1.79	6.26	0.94	0.60	AT3G53040	GO:0005829,cytosol; GO:0010227,floral organ abscission; 	--	NP_190872.1 late embryogenesis abundant protein, putative / LEA protein [Arabidopsis thaliana]
AT3G53140	-0.875525541527881	0.383639695952716	0.0224801459960264	0.162604204711783	Down	27.12	25.51	14.69	14.46	AT3G53140	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0008938,nicotinate N-methyltransferase activity; GO:0016740,transferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0032259,methylation; GO:0046983,protein dimerization activity; GO:1901847,nicotinate metabolic process; 	--	NP_190882.1 O-methyltransferase family protein [Arabidopsis thaliana]
AT3G53235	5.25602758504538	2.33533752127878	0.0244077086909282	1	Up	0.00	0.00	3.91	6.29	AT3G53235	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_680126.1 hypothetical protein AT3G53235 [Arabidopsis thaliana]
AT3G53260	-0.60085443195669	0.174106515582951	0.000558360894639239	0.00917412834172154	Down	67.22	71.97	48.25	44.91	AT3G53260	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006559,L-phenylalanine catabolic process; GO:0006979,response to oxidative stress; GO:0009698,phenylpropanoid metabolic process; GO:0009699,phenylpropanoid biosynthetic process; GO:0009800,cinnamic acid biosynthetic process; GO:0016829,lyase activity; GO:0016841,ammonia-lyase activity; GO:0045548,phenylalanine ammonia-lyase activity; 	PAL; phenylalanine ammonia-lyase [EC:4.3.1.24]; K10775; 	NP_190894.1 phenylalanine ammonia-lyase 2 [Arabidopsis thaliana]
AT3G53370	2.94766607487614	0.793116655146222	0.000201953255947874	1	Up	3.04	10.03	45.29	56.34	AT3G53370	GO:0003674,molecular_function; GO:0003677,DNA binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0016020,membrane; 	--	NP_566985.1 S1FA-like DNA-binding protein [Arabidopsis thaliana]
AT3G53510	-1.02990920742095	0.4514600130253	0.0225315547921131	0.162786218518441	Down	15.30	9.05	4.41	7.82	AT3G53510	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1903825,organic acid transmembrane transport; 	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681; 	NP_190919.1 ABC-2 type transporter family protein [Arabidopsis thaliana]
AT3G53520	0.731457133656013	0.138389318909783	1.253599499287e-07	5.78100438239971e-06	Up	115.21	111.65	190.65	192.15	AT3G53520	GO:0000138,Golgi trans cisterna; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005829,cytosol; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016831,carboxy-lyase activity; GO:0032580,Golgi cisterna membrane; GO:0033320,UDP-D-xylose biosynthetic process; GO:0042732,D-xylose metabolic process; GO:0048040,UDP-glucuronate decarboxylase activity; GO:0070403,NAD+ binding; 	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]; K08678; 	NP_001190080.1 UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana]
AT3G53630	1.97955494892017	0.41457668561499	1.79812236357901e-06	6.65842027468585e-05	Up	16.69	9.36	48.07	56.75	AT3G53630	GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009941,chloroplast envelope; 	--	NP_190931.2 hypothetical protein AT3G53630 [Arabidopsis thaliana]
AT3G53740	1.55069379419712	0.128629194209482	1.81350378506798e-33	3.21378777910975e-30	Up	879.10	1105.98	3224.17	2683.50	AT3G53740	GO:0000325,plant-type vacuole; GO:0002181,cytoplasmic translation; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L36e, RPL36; large subunit ribosomal protein L36e; K02920; 	NP_001030855.1 Ribosomal protein L36e family protein [Arabidopsis thaliana]
AT3G53750	-0.676275116925228	0.188708891128262	0.000338767590042692	0.00600344564925656	Down	137.39	124.89	73.20	94.11	AT3G53750	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0007010,cytoskeleton organization; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0048589,developmental growth; GO:0048767,root hair elongation; 	--	NP_001031504.1 actin 1 [Arabidopsis thaliana]
AT3G54085	1.35049990198778	0.604920613700344	0.0255803384053365	0.178372174209219	Up	20.76	20.64	61.22	45.76	AT3G54085	GO:0000139,Golgi membrane; GO:0003674,molecular_function; GO:0005789,endoplasmic reticulum membrane; GO:0006888,endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0015031,protein transport; GO:0016020,membrane; GO:0030134,COPII-coated ER to Golgi transport vesicle; 	--	NP_001078282.1 Yos1-like protein [Arabidopsis thaliana]
AT3G54130	1.3630259512659	0.507371870931103	0.00722171239483451	0.0693385001996301	Up	8.06	9.16	26.82	18.01	AT3G54130	GO:0004843,cysteine-type deubiquitinase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; 	ATXN3, MJD; Ataxin-3 [EC:3.4.22.-]; K11863; 	NP_190981.1 Josephin family protein [Arabidopsis thaliana]
AT3G54200	0.737544956284982	0.302057866573902	0.0146169130074318	0.11905634002442	Up	34.75	42.55	67.68	63.11	AT3G54200	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; 	--	NP_190988.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]
AT3G54290	-0.699149593671636	0.354575268968225	0.0486330612966956	0.272026975870926	Down	33.60	30.08	16.98	23.07	AT3G54290	GO:0055072,iron ion homeostasis; 	--	NP_566997.1 hemerythrin HHE cation-binding domain protein [Arabidopsis thaliana]
AT3G54310	-4.72110429863073	2.27529573781287	0.0379920078993356	1	Down	1.96	1.43	0.00	0.00	AT3G54310	GO:0000428,DNA-directed RNA polymerase complex; GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_190999.1 DNA-directed RNA polymerase subunit alpha [Arabidopsis thaliana]
AT3G54710	1.10682982410755	0.510148141758139	0.0300353161291149	0.199458295814599	Up	4.17	7.58	14.32	11.28	AT3G54710	GO:0000076,DNA replication checkpoint signaling; GO:0000278,mitotic cell cycle; GO:0003677,DNA binding; GO:0004693,cyclin-dependent protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006260,DNA replication; GO:0007049,cell cycle; GO:0009658,chloroplast organization; GO:0030174,regulation of DNA-templated DNA replication initiation; GO:0048229,gametophyte development; GO:0051276,chromosome organization; GO:0070182,DNA polymerase binding; GO:0071163,DNA replication preinitiation complex assembly; 	--	NP_191031.1 CDT1-like protein B [Arabidopsis thaliana]
AT3G54840	0.676613928595303	0.302808074452824	0.0254525180541858	0.177981108490516	Up	47.83	39.84	73.19	69.19	AT3G54840	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005769,early endosome; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006886,intracellular protein transport; GO:0006897,endocytosis; GO:0010008,endosome membrane; GO:0010009,cytoplasmic side of endosome membrane; GO:0012505,endomembrane system; GO:0016020,membrane; GO:0031901,early endosome membrane; GO:0045022,early endosome to late endosome transport; 	--	NP_567008.1 Ras-related small GTP-binding family protein [Arabidopsis thaliana]
AT3G54890	-1.02096311121725	0.115194810799627	7.79411499035007e-19	2.84370577809684e-16	Down	732.12	819.10	383.01	394.02	AT3G54890	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0009645,response to low light intensity stimulus; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; 	LHCA1; light-harvesting complex I chlorophyll a/b binding protein 1; K08907; 	NP_191049.1 chlorophyll a-b binding protein 6 [Arabidopsis thaliana]
AT3G55005	1.3137377206415	0.292109123143586	6.87826878969223e-06	0.000218222312880133	Up	30.57	28.28	80.66	67.82	AT3G55005	GO:0000226,microtubule cytoskeleton organization; GO:0000913,preprophase band assembly; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0030865,cortical cytoskeleton organization; GO:0030981,cortical microtubule cytoskeleton; 	--	NP_567013.1 tonneau 1b (TON1b) [Arabidopsis thaliana]
AT3G55010	0.68054845946067	0.25379839641705	0.00733032210860948	0.0703268722020887	Up	42.05	31.91	57.97	62.66	AT3G55010	GO:0000166,nucleotide binding; GO:0004637,phosphoribosylamine-glycine ligase activity; GO:0004641,phosphoribosylformylglycinamidine cyclo-ligase activity; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006164,purine nucleotide biosynthetic process; GO:0006189,'de novo' IMP biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016874,ligase activity; GO:0046084,adenine biosynthetic process; 	purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]; K01933; 	NP_191061.1 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) [Arabidopsis thaliana]
AT3G55100	-1.71111054360407	0.677979388713475	0.0116081214165404	0.100138210133647	Down	4.83	7.77	2.54	1.31	AT3G55100	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; 	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681; 	NP_001319754.1 ABC-2 type transporter family protein [Arabidopsis thaliana]
AT3G55130	-0.737361705591664	0.344714854119925	0.0324317608614286	0.209758077938489	Down	17.64	16.08	8.52	12.15	AT3G55130	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005775,vacuolar lumen; GO:0007034,vacuolar transport; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; 	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681; 	NP_191073.1 white-brown complex homolog 19 [Arabidopsis thaliana]
AT3G55160	1.14673498683647	0.303428192180136	0.000157293125028145	0.00314713099350668	Up	3.74	3.30	8.50	7.33	AT3G55160	GO:0009631,cold acclimation; GO:0030488,tRNA methylation; GO:0032006,regulation of TOR signaling; 	--	NP_001319755.1 thyroid adenoma-associated-like protein [Arabidopsis thaliana]
AT3G55252	-2.65617607221646	0.924110942211196	0.00404918599205484	1	Down	19.64	14.39	1.35	4.33	AT3G55252	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0008150,biological_process; GO:0060320,rejection of self pollen; 	--	NP_001078292.1 Plant self-incompatibility protein S1 family [Arabidopsis thaliana]
AT3G55280	1.17651235658906	0.144559537956071	3.99872390283312e-16	1.01233000029887e-13	Up	259.99	247.54	593.62	571.89	AT3G55280	GO:0000027,ribosomal large subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0006979,response to oxidative stress; GO:0009409,response to cold; GO:0009644,response to high light intensity; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L23Ae, RPL23A; large subunit ribosomal protein L23Ae; K02893; 	KAG7628595.1 Ribosomal protein L25/L23 [Arabidopsis thaliana x Arabidopsis arenosa]
AT3G55340	1.03745500267435	0.378064665767723	0.00606732604376254	0.0606608892631971	Up	10.32	7.03	17.87	18.38	AT3G55340	GO:0000914,phragmoplast assembly; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0008270,zinc ion binding; GO:0009524,phragmoplast; GO:0009920,cell plate formation involved in plant-type cell wall biogenesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0046872,metal ion binding; 	--	NP_191094.1 phragmoplastin interacting protein 1 [Arabidopsis thaliana]
AT3G55510	1.04860985170948	0.325969179110838	0.00129584311672235	0.0179407744006035	Up	10.56	13.98	21.98	29.67	AT3G55510	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0010582,floral meristem determinacy; GO:0030690,Noc1p-Noc2p complex; GO:0030691,Noc2p-Noc3p complex; GO:0042273,ribosomal large subunit biogenesis; 	--	NP_001326972.1 Noc2p family [Arabidopsis thaliana]
AT3G55710	-0.805051838358233	0.390479156247674	0.0392360719016694	0.237426083873273	Down	18.14	20.67	11.37	11.20	AT3G55710	GO:0005575,cellular_component; GO:0008194,UDP-glycosyltransferase activity; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; 	--	NP_191130.1 UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]
AT3G55780	-3.05174172391438	1.46766776497869	0.0375885246551056	1	Down	6.56	1.13	0.89	0.00	AT3G55780	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; 	--	NP_001319762.1 Glycosyl hydrolase superfamily protein [Arabidopsis thaliana]
AT3G55920	0.905474972124081	0.389539780975321	0.0201001200786743	0.150025264486134	Up	24.90	20.24	36.35	49.89	AT3G55920	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity; GO:0043231,intracellular membrane-bounded organelle; 	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802; 	NP_567029.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT3G56020	1.34454500373446	0.260811360416571	2.53307083797503e-07	1.1103443019463e-05	Up	402.50	333.44	938.80	962.17	AT3G56020	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex; 	RP-L41e, RPL41; large subunit ribosomal protein L41e; K02928; 	--
AT3G56240	-1.5002981623572	0.187459611703567	1.21114427413278e-15	2.59038702079607e-13	Down	469.86	438.32	171.49	154.09	AT3G56240	GO:0005829,cytosol; GO:0006811,ion transport; GO:0006825,copper ion transport; GO:0006878,cellular copper ion homeostasis; GO:0009507,chloroplast; GO:0016531,copper chaperone activity; GO:0019904,protein domain specific binding; GO:0046686,response to cadmium ion; GO:0046872,metal ion binding; GO:0050896,response to stimulus; 	--	CAE6076414.1 unnamed protein product [Arabidopsis arenosa]
AT3G56360	-0.729356689914358	0.342668904666242	0.033299051712882	0.213560092274166	Down	48.06	51.72	33.17	27.81	AT3G56360	GO:0009536,plastid; 	--	NP_191195.1 hypothetical protein AT3G56360 [Arabidopsis thaliana]
AT3G56430	-0.977548823984881	0.484757175326527	0.0437399653253182	0.254438266885568	Down	19.21	13.62	11.12	5.65	AT3G56430	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005773,vacuole; GO:0009536,plastid; GO:0016020,membrane; GO:0043231,intracellular membrane-bounded organelle; 	--	NP_191202.1 import inner membrane translocase subunit [Arabidopsis thaliana]
AT3G56690	0.835806557976064	0.392628143420771	0.0332750766634362	0.213557897467798	Up	4.81	5.87	11.66	7.63	AT3G56690	GO:0000166,nucleotide binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0016887,ATP hydrolysis activity; 	--	NP_191228.1 Cam interacting protein 111 [Arabidopsis thaliana]
AT3G56980	3.55172988638801	1.6732267907431	0.033780433399423	1	Up	0.00	0.66	4.34	3.35	AT3G56980	GO:0000977,RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010106,cellular response to iron ion starvation; GO:0046983,protein dimerization activity; GO:0055072,iron ion homeostasis; GO:0090575,RNA polymerase II transcription regulator complex; 	--	NP_191257.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]
AT3G57150	0.795283958319752	0.163084339756506	1.07974034457701e-06	4.12128583830087e-05	Up	65.54	59.14	113.28	106.54	AT3G57150	GO:0000495,box H/ACA RNA 3'-end processing; GO:0001522,pseudouridine synthesis; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0009451,RNA modification; GO:0009506,plasmodesma; GO:0009982,pseudouridine synthase activity; GO:0016853,isomerase activity; GO:0031118,rRNA pseudouridine synthesis; GO:0031120,snRNA pseudouridine synthesis; GO:0031429,box H/ACA snoRNP complex; GO:0042254,ribosome biogenesis; GO:1990481,mRNA pseudouridine synthesis; GO:1990904,ribonucleoprotein complex; 	DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]; K11131; 	NP_191274.1 homologue of NAP57 [Arabidopsis thaliana]
AT3G57490	0.847355100300011	0.283607119315023	0.00281013631432322	0.0330737580447623	Up	33.55	46.17	67.00	78.83	AT3G57490	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0015935,small ribosomal subunit; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S2e, RPS2; small subunit ribosomal protein S2e; K02981; 	NP_191308.1 Ribosomal protein S5 family protein [Arabidopsis thaliana]
AT3G57520	0.716337603738397	0.127565577923028	1.96055973381284e-08	1.08092193324214e-06	Up	94.75	89.72	161.31	146.47	AT3G57520	GO:0005975,carbohydrate metabolic process; GO:0006979,response to oxidative stress; GO:0009506,plasmodesma; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0034484,raffinose catabolic process; GO:0047274,galactinol-sucrose galactosyltransferase activity; GO:0052692,raffinose alpha-galactosidase activity; 	E2.4.1.82; raffinose synthase [EC:2.4.1.82]; K06617; 	NP_191311.1 seed imbibition 2 [Arabidopsis thaliana]
AT3G57610	0.605603380634451	0.208607763028727	0.00369521532101085	0.0412965279794051	Up	48.67	62.41	95.99	75.39	AT3G57610	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0004019,adenylosuccinate synthase activity; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0006164,purine nucleotide biosynthetic process; GO:0006167,AMP biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016874,ligase activity; GO:0044208,'de novo' AMP biosynthetic process; GO:0046040,IMP metabolic process; GO:0046872,metal ion binding; GO:0048046,apoplast; 	purA, ADSS; adenylosuccinate synthase [EC:6.3.4.4]; K01939; 	NP_191320.1 adenylosuccinate synthase [Arabidopsis thaliana]
AT3G57660	0.833624806753914	0.210446034815377	7.45651692608657e-05	0.00171610561165313	Up	16.40	12.59	29.42	23.02	AT3G57660	GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0008270,zinc ion binding; GO:0009506,plasmodesma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0042254,ribosome biogenesis; GO:0046872,metal ion binding; 	RPA1, POLR1A; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]; K02999; 	NP_001325828.1 nuclear RNA polymerase A1 [Arabidopsis thaliana]
AT3G57810	-1.21373410483972	0.429425384271731	0.00470723181718686	0.049669322047456	Down	30.85	31.26	18.40	8.48	AT3G57810	GO:0004843,cysteine-type deubiquitinase activity; GO:0005737,cytoplasm; GO:0009507,chloroplast; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; 	--	NP_001078307.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]
AT3G57940	0.85959774257295	0.284405422432478	0.00250747482105049	0.030197033813479	Up	9.64	9.09	18.47	16.02	AT3G57940	GO:0000049,tRNA binding; GO:0000154,rRNA modification; GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006807,nitrogen compound metabolic process; GO:0008033,tRNA processing; GO:0008080,N-acetyltransferase activity; GO:0016072,rRNA metabolic process; GO:0016407,acetyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0034470,ncRNA processing; GO:0042274,ribosomal small subunit biogenesis; GO:0043412,macromolecule modification; GO:0044238,primary metabolic process; GO:0051391,tRNA acetylation; GO:1904812,rRNA acetylation involved in maturation of SSU-rRNA; GO:1990883,rRNA cytidine N-acetyltransferase activity; 	NAT10, KRE33; N-acetyltransferase 10 [EC:2.3.1.-]; K14521; 	NP_191353.2 GNAT acetyltransferase (DUF699) [Arabidopsis thaliana]
AT3G58270	1.72333199810022	0.55563982362838	0.00192525217191758	0.0245667596214086	Up	5.68	3.99	17.33	15.13	AT3G58270	GO:0005515,protein binding; 	--	NP_001030883.1 phospholipase-like protein (PEARLI 4) with TRAF-like domain protein [Arabidopsis thaliana]
AT3G58660	0.841911903914049	0.206180567131987	4.43869298359601e-05	0.00110123972923017	Up	56.96	44.36	98.39	86.05	AT3G58660	GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0030686,90S preribosome; 	--	NP_191425.1 Ribosomal protein L1p/L10e family [Arabidopsis thaliana]
AT3G58670	2.10057053707642	1.06413460971133	0.0483850750174023	1	Up	1.29	1.77	7.87	5.36	AT3G58670	GO:0005506,iron ion binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0017172,cysteine dioxygenase activity; GO:0018171,peptidyl-cysteine oxidation; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0070483,detection of hypoxia; GO:0071456,cellular response to hypoxia; 	PCO; plant cysteine oxidase [EC:1.13.11.-]; K23953; 	NP_001078310.1 2-aminoethanethiol dioxygenase, putative (DUF1637) [Arabidopsis thaliana]
AT3G58730	-0.657304194006139	0.219560850669351	0.00275596745571779	0.032559786941123	Down	114.76	113.03	78.57	67.89	AT3G58730	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0033176,proton-transporting V-type ATPase complex; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport; 	ATPeV1D, ATP6M; V-type H+-transporting ATPase subunit D; K02149; 	NP_191432.1 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) [Arabidopsis thaliana]
AT3G58810	2.17568008165056	0.909802488608586	0.016785340557257	1	Up	1.44	0.99	7.79	3.34	AT3G58810	GO:0005385,zinc ion transmembrane transporter activity; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006812,cation transport; GO:0006829,zinc ion transport; GO:0008324,cation transmembrane transporter activity; GO:0009705,plant-type vacuole membrane; GO:0010043,response to zinc ion; GO:0010312,detoxification of zinc ion; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0046872,metal ion binding; GO:0055085,transmembrane transport; GO:0071577,zinc ion transmembrane transport; GO:0098655,cation transmembrane transport; 	--	NP_974456.1 metal tolerance protein A2 [Arabidopsis thaliana]
AT3G58920	2.43221443688581	0.400808953038532	1.29300447384643e-09	9.21823017130171e-08	Up	5.47	4.92	32.96	23.95	AT3G58920	GO:0005515,protein binding; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_191451.1 F-box/RNI-like superfamily protein [Arabidopsis thaliana]
AT3G59280	2.21156459776103	0.34049773469279	8.29818989546807e-11	7.68201833233443e-09	Up	31.98	43.04	216.19	135.34	AT3G59280	GO:0002237,response to molecule of bacterial origin; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005744,TIM23 mitochondrial import inner membrane translocase complex; GO:0006952,defense response; GO:0009734,auxin-activated signaling pathway; GO:0015031,protein transport; GO:0016020,membrane; GO:0030150,protein import into mitochondrial matrix; GO:0031348,negative regulation of defense response; GO:1900425,negative regulation of defense response to bacterium; GO:1902009,positive regulation of toxin transport; GO:1902289,negative regulation of defense response to oomycetes; GO:2000012,regulation of auxin polar transport; GO:2000378,negative regulation of reactive oxygen species metabolic process; 	--	NP_001327906.1 Protein Transporter, Pam16 [Arabidopsis thaliana]
AT3G59410	-1.31329530794689	0.596132301515983	0.0275928749844223	0.188278115611529	Down	3.73	3.22	1.58	1.24	AT3G59410	GO:0000049,tRNA binding; GO:0000166,nucleotide binding; GO:0003723,RNA binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004694,eukaryotic translation initiation factor 2alpha kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006417,regulation of translation; GO:0006468,protein phosphorylation; GO:0006521,regulation of cellular amino acid metabolic process; GO:0009635,response to herbicide; GO:0010998,regulation of translational initiation by eIF2 alpha phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018105,peptidyl-serine phosphorylation; GO:0034198,cellular response to amino acid starvation; GO:0051171,regulation of nitrogen compound metabolic process; GO:0060255,regulation of macromolecule metabolic process; GO:0070301,cellular response to hydrogen peroxide; GO:0072755,cellular response to benomyl; GO:0080090,regulation of primary metabolic process; GO:0106310,protein serine kinase activity; GO:1990451,cellular stress response to acidic pH; 	EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1]; K16196; 	NP_001326041.1 protein kinase family protein [Arabidopsis thaliana]
AT3G59510	-1.31952998812613	0.314523715230207	2.72477607537251e-05	0.000738009764519564	Down	48.16	36.58	16.34	18.25	AT3G59510	GO:0005515,protein binding; 	--	NP_191510.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT3G59540	0.821036633330941	0.110412046147377	1.03689856652463e-13	1.71503022903174e-11	Up	1802.92	2077.21	3459.64	3505.62	AT3G59540	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022618,ribonucleoprotein complex assembly; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L38e, RPL38; large subunit ribosomal protein L38e; K02923; 	NP_181874.1 Ribosomal L38e protein family [Arabidopsis thaliana]
AT3G59570	-2.74763436441009	1.26976484366385	0.0304726162503001	1	Down	3.43	0.91	0.45	0.19	AT3G59570	GO:0005096,GTPase activator activity; GO:0090630,activation of GTPase activity; 	--	NP_001325779.1 Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]
AT3G59640	1.86133301330346	0.748036680089349	0.0128358621147578	1	Up	4.11	2.78	10.93	14.64	AT3G59640	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0050832,defense response to fungus; 	--	NP_001078314.1 glycine-rich protein [Arabidopsis thaliana]
AT3G59670	1.11907658682386	0.542407569260408	0.0390969062278987	0.236815000857951	Up	3.62	5.30	10.42	9.21	AT3G59670	GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; 	--	NP_191526.2 elongation factor [Arabidopsis thaliana]
AT3G59840	0.735794612075425	0.357718122512029	0.0396947148013039	0.239500455792887	Up	74.11	56.93	105.60	116.57	AT3G59840	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009941,chloroplast envelope; 	--	NP_567086.1 allyl alcohol dehydrogenase-like protein [Arabidopsis thaliana]
AT3G60180	2.27338263781341	0.969894684738602	0.0190808350719346	1	Up	1.52	2.51	9.88	9.88	AT3G60180	GO:0000166,nucleotide binding; GO:0004127,cytidylate kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006139,nucleobase-containing compound metabolic process; GO:0006207,'de novo' pyrimidine nucleobase biosynthetic process; GO:0006221,pyrimidine nucleotide biosynthetic process; GO:0006225,UDP biosynthetic process; GO:0009041,uridylate kinase activity; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019205,nucleobase-containing compound kinase activity; GO:0033862,UMP kinase activity; GO:0036430,CMP kinase activity; GO:0036431,dCMP kinase activity; GO:0046705,CDP biosynthetic process; GO:0046940,nucleoside monophosphate phosphorylation; GO:0072528,pyrimidine-containing compound biosynthetic process; 	CMPK1, UMPK; UMP-CMP kinase [EC:2.7.4.14]; K13800; 	NP_567093.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT3G60245	0.613586864143485	0.112241798198006	4.58614858708183e-08	2.30328636529353e-06	Up	1233.59	1171.24	1952.12	1785.01	AT3G60245	GO:0003674,molecular_function; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-L37Ae, RPL37A; large subunit ribosomal protein L37Ae; K02921; 	NP_567096.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT3G60330	-3.24209638210073	1.26333408587486	0.0102789386866837	1	Down	2.03	1.60	0.23	0.15	AT3G60330	GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008553,P-type proton-exporting transporter activity; GO:0015662,P-type ion transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0051453,regulation of intracellular pH; GO:0120029,proton export across plasma membrane; GO:1902600,proton transmembrane transport; 	PMA1, PMA2; H+-transporting ATPase [EC:7.1.2.1]; K01535; 	NP_001190141.1 H[+]-ATPase 7 [Arabidopsis thaliana]
AT3G60480	1.42266677655517	0.436494085014888	0.00111686049067234	0.0159615833949198	Up	20.30	29.32	77.68	56.91	AT3G60480	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_567100.1 StAR lipid transfer-like protein [Arabidopsis thaliana]
AT3G60600	0.767660396697603	0.183922028260042	2.9951329672832e-05	0.000795602236812593	Up	106.69	100.38	159.38	199.50	AT3G60600	GO:0000326,protein storage vacuole; GO:0005515,protein binding; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0016020,membrane; GO:0032586,protein storage vacuole membrane; GO:0046907,intracellular transport; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization; 	--	NP_567101.1 vesicle associated protein [Arabidopsis thaliana]
AT3G60800	1.24457404688084	0.342821958758047	0.000283004052080391	0.00518562077704173	Up	17.50	17.84	40.54	44.60	AT3G60800	GO:0000138,Golgi trans cisterna; GO:0005769,early endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0006612,protein targeting to membrane; GO:0010150,leaf senescence; GO:0016020,membrane; GO:0016409,palmitoyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0018230,peptidyl-L-cysteine S-palmitoylation; GO:0019706,protein-cysteine S-palmitoyltransferase activity; GO:0019707,protein-cysteine S-acyltransferase activity; GO:1900055,regulation of leaf senescence; GO:2000377,regulation of reactive oxygen species metabolic process; 	--	NP_191639.2 DHHC-type zinc finger family protein [Arabidopsis thaliana]
AT3G61110	1.00923093625113	0.118588240054605	1.73364876136105e-17	5.37647822117095e-15	Up	874.32	828.75	1772.57	1710.32	AT3G61110	GO:0000028,ribosomal small subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S27e, RPS27; small subunit ribosomal protein S27e; K02978; 	NP_191670.1 ribosomal protein S27 [Arabidopsis thaliana]
AT3G61130	-0.594452067775222	0.183388641471751	0.00118907469487893	0.0167618995340604	Down	67.90	71.95	43.06	51.28	AT3G61130	GO:0000139,Golgi membrane; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0010289,homogalacturonan biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0045489,pectin biosynthetic process; GO:0047262,polygalacturonate 4-alpha-galacturonosyltransferase activity; GO:0071555,cell wall organization; 	GAUT; alpha-1,4-galacturonosyltransferase [EC:2.4.1.43]; K13648; 	NP_191672.1 galacturonosyltransferase 1 [Arabidopsis thaliana]
AT3G61210	-1.943913197972	0.841833267234269	0.0209356603814645	1	Down	8.64	11.79	2.15	3.31	AT3G61210	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; 	--	NP_191680.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT3G61580	0.689279887354745	0.230571986164229	0.00279494217755698	0.0329261706672311	Up	785.48	615.72	1025.34	1268.66	AT3G61580	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006665,sphingolipid metabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016717,oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; GO:0030148,sphingolipid biosynthetic process; GO:0044255,cellular lipid metabolic process; GO:0046872,metal ion binding; GO:0052631,sphingolipid delta-8 desaturase activity; GO:0070417,cellular response to cold; 	SLD; sphingolipid 8-(E/Z)-desaturase [EC:1.14.19.29]; K21734; 	NP_191717.1 Fatty acid/sphingolipid desaturase [Arabidopsis thaliana]
AT3G61630	2.92997702932347	0.398980295996668	2.0782527154728e-13	3.14399084578538e-11	Up	7.17	5.43	55.53	42.10	AT3G61630	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009736,cytokinin-activated signaling pathway; GO:0009873,ethylene-activated signaling pathway; GO:0048366,leaf development; GO:0048825,cotyledon development; 	--	NP_191722.1 cytokinin response factor 6 [Arabidopsis thaliana]
AT3G61870	-1.29491920602074	0.214994060598604	1.71164330610327e-09	1.19960085944695e-07	Down	150.65	121.11	52.19	60.66	AT3G61870	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0016020,membrane; 	--	NP_191746.1 plant/protein [Arabidopsis thaliana]
AT3G61920	4.18405391442303	1.24922297189925	0.000810086687522475	1	Up	0.00	1.37	7.78	16.92	AT3G61920	--	--	NP_191751.1 UvrABC system protein C [Arabidopsis thaliana]
AT3G62120	0.69115333997347	0.13450446967546	2.76916942994807e-07	1.20110303421349e-05	Up	126.78	150.82	225.81	229.57	AT3G62120	GO:0000166,nucleotide binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004827,proline-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006433,prolyl-tRNA aminoacylation; GO:0009506,plasmodesma; GO:0016874,ligase activity; GO:0017101,aminoacyl-tRNA synthetase multienzyme complex; 	PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15]; K01881; 	NP_001326276.1 Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]
AT3G62170	-1.08390685750727	0.194518798145157	2.51474031309009e-08	1.33885637699067e-06	Down	83.14	73.45	35.90	39.28	AT3G62170	GO:0004857,enzyme inhibitor activity; GO:0005576,extracellular region; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; GO:0071555,cell wall organization; GO:0090406,pollen tube; 	--	NP_191776.1 VANGUARD-like protein [Arabidopsis thaliana]
AT3G62280	-3.97102163094057	1.91253987800356	0.0378654844195315	1	Down	3.76	1.61	0.00	0.39	AT3G62280	GO:0005576,extracellular region; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_001326329.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]
AT3G62400	0.800559920543191	0.329095150113121	0.0149904666710866	0.121069251197606	Up	56.25	59.11	93.49	111.03	AT3G62400	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005746,mitochondrial respirasome; GO:0016020,membrane; 	--	NP_850738.1 cytochrome C oxidase subunit [Arabidopsis thaliana]
AT3G62410	-0.669586163372227	0.231784480854097	0.00386676989891931	0.0428279291036554	Down	237.84	210.69	124.41	163.23	AT3G62410	GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0016151,nickel cation binding; GO:0018316,peptide cross-linking via L-cystine; GO:0019253,reductive pentose-phosphate cycle; GO:0019899,enzyme binding; GO:0030674,protein-macromolecule adaptor activity; GO:0032991,protein-containing complex; GO:0034605,cellular response to heat; GO:0044877,protein-containing complex binding; GO:0065003,protein-containing complex assembly; GO:0070417,cellular response to cold; GO:0071454,cellular response to anoxia; GO:0080153,negative regulation of reductive pentose-phosphate cycle; GO:0099080,supramolecular complex; 	--	NP_191800.1 CP12 domain-containing protein 2 [Arabidopsis thaliana]
AT3G62420	1.68345808207391	0.851256020251946	0.0479719691047488	1	Up	5.31	5.26	9.18	25.58	AT3G62420	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006971,hypotonic response; GO:0009267,cellular response to starvation; GO:0043565,sequence-specific DNA binding; GO:0045735,nutrient reservoir activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; GO:2000693,positive regulation of seed maturation; 	--	NP_191801.1 basic region/leucine zipper motif 53 [Arabidopsis thaliana]
AT3G62460	1.27386491873513	0.304782723026871	2.92043144522997e-05	0.000782461167993041	Up	31.86	47.40	91.78	102.88	AT3G62460	GO:0004519,endonuclease activity; GO:0004540,ribonuclease activity; GO:0005739,mitochondrion; GO:0005777,peroxisome; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0035194,post-transcriptional gene silencing by RNA; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1903231,mRNA base-pairing post-transcriptional repressor activity; 	--	NP_191805.1 Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]
AT3G62820	0.732118066776042	0.31739292301948	0.0210736927087088	0.155052881406603	Up	44.86	37.86	72.10	67.48	AT3G62820	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; 	--	NP_191841.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT3G62870	0.59370818221431	0.144102877816857	3.78823042588706e-05	0.000964948633123798	Up	204.21	195.05	298.06	314.53	AT3G62870	GO:0000325,plant-type vacuole; GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042254,ribosome biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L7Ae, RPL7A; large subunit ribosomal protein L7Ae; K02936; 	NP_191846.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]
AT3G62900	0.710422815509298	0.355096825794411	0.0454306220500575	0.260428311705621	Up	7.12	4.16	10.50	8.24	AT3G62900	GO:0008270,zinc ion binding; GO:0009506,plasmodesma; GO:0046872,metal ion binding; 	--	NP_001319823.1 CW-type Zinc Finger [Arabidopsis thaliana]
AT3G63052	1.92571955302155	0.175757044283328	6.16995807757966e-28	4.78364562202348e-25	Up	521.03	556.01	2504.84	1648.92	AT3G63052	GO:0003674,molecular_function; 	--	NP_001118897.1 hypothetical protein AT3G63052 [Arabidopsis thaliana]
AT3G63140	-1.26095296825298	0.184922688172831	9.17966995087371e-12	9.90207006439898e-10	Down	136.43	125.69	58.04	52.94	AT3G63140	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:0045727,positive regulation of translation; GO:0045893,positive regulation of DNA-templated transcription; GO:0048046,apoplast; 	--	NP_191873.1 chloroplast stem-loop binding protein of 41 kDa [Arabidopsis thaliana]
AT3G63170	-0.680274323343132	0.256089729183527	0.00789820968069836	0.0746778133300786	Down	86.74	73.57	55.44	45.96	AT3G63170	GO:0005504,fatty acid binding; GO:0005829,cytosol; GO:0006631,fatty acid metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016872,intramolecular lyase activity; 	--	NP_567140.1 Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]
AT3G63190	-0.766524659866016	0.227405608431229	0.000749671973054086	0.0116683573723161	Down	136.10	118.49	63.17	89.59	AT3G63190	GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0009793,embryo development ending in seed dormancy; GO:0032544,plastid translation; GO:0043023,ribosomal large subunit binding; GO:0050832,defense response to fungus; 	--	NP_567141.1 ribosome recycling factor, chloroplast precursor [Arabidopsis thaliana]
AT3G63210	1.27332074902487	0.576410074229666	0.0271709130202746	0.186552708114138	Up	5.62	9.10	19.60	16.43	AT3G63210	GO:0000932,P-body; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0009737,response to abscisic acid; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0010162,seed dormancy process; GO:0010494,cytoplasmic stress granule; GO:0019900,kinase binding; GO:0046872,metal ion binding; GO:1905582,response to mannose; 	--	NP_567143.1 mediator of aba-regulated dormancy protein (DUF581) [Arabidopsis thaliana]
AT3G63400	0.717222972488107	0.331278025825835	0.0303862875193678	0.201035678228138	Up	12.58	14.43	19.90	25.32	AT3G63400	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0006457,protein folding; GO:0008380,RNA splicing; GO:0016018,cyclosporin A binding; GO:0016607,nuclear speck; GO:0016853,isomerase activity; 	--	NP_001190169.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT3G63410	0.743260783507489	0.123383355091127	1.70163033500708e-09	1.19935933555471e-07	Up	225.77	212.18	367.64	377.51	AT3G63410	GO:0005515,protein binding; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010189,vitamin E biosynthetic process; GO:0010236,plastoquinone biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; GO:0051741,2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity; GO:0051742,2-methyl-6-solanyl-1,4-benzoquinone methyltransferase activity; GO:0071704,organic substance metabolic process; GO:0102550,2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity; 	VTE3, APG1; MPBQ/MSBQ methyltransferase [EC:2.1.1.295]; K12502; 	NP_191900.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT3G63420	1.24560555803293	0.628530847174247	0.047504635649656	0.268105097922649	Up	10.68	12.35	32.37	22.89	AT3G63420	GO:0000139,Golgi membrane; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005834,heterotrimeric G-protein complex; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0009845,seed germination; GO:0010541,acropetal auxin transport; GO:0016020,membrane; GO:0018342,protein prenylation; GO:0018345,protein palmitoylation; GO:0048527,lateral root development; GO:0050832,defense response to fungus; 	--	NP_001325615.1 Ggamma-subunit 1 [Arabidopsis thaliana]
AT4G00040	-1.27722363593788	0.566573612464997	0.0241776629243039	0.171679398154545	Down	83.15	74.49	20.11	46.08	AT4G00040	GO:0005783,endoplasmic reticulum; GO:0008152,metabolic process; GO:0009058,biosynthetic process; GO:0009813,flavonoid biosynthetic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0030639,polyketide biosynthetic process; 	--	NP_191915.1 Chalcone and stilbene synthase family protein [Arabidopsis thaliana]
AT4G00350	-1.24540557268445	0.5078821870708	0.0142003689658889	0.11673663155855	Down	12.08	10.12	4.97	4.53	AT4G00350	GO:0015297,antiporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042910,xenobiotic transmembrane transporter activity; GO:0055085,transmembrane transport; GO:1990961,xenobiotic detoxification by transmembrane export across the plasma membrane; 	--	NP_567173.3 MATE efflux family protein [Arabidopsis thaliana]
AT4G00355	1.30804813825256	0.285548651319477	4.63147311133156e-06	0.000154030627201255	Up	24.91	30.59	66.04	73.61	AT4G00355	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006914,autophagy; GO:0015031,protein transport; GO:0016020,membrane; GO:0043231,intracellular membrane-bounded organelle; GO:0061912,selective autophagy; 	--	NP_567174.1 mesoderm induction early response protein [Arabidopsis thaliana]
AT4G01130	0.753124919703801	0.346964675857347	0.0299606819655971	0.199458295814599	Up	16.42	14.97	28.48	25.21	AT4G01130	GO:0005576,extracellular region; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0016042,lipid catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; 	--	NP_001329403.1 GDSL-like Lipase/Acylhydrolase superfamily protein [Arabidopsis thaliana]
AT4G01310	-0.907526407271085	0.157020022340002	7.48402226457632e-09	4.50676195107133e-07	Down	285.96	260.77	144.13	152.30	AT4G01310	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L5, MRPL5, rplE; large subunit ribosomal protein L5; K02931; 	NP_192040.1 Ribosomal L5P family protein [Arabidopsis thaliana]
AT4G01560	1.13695707076709	0.296479856594522	0.000125638717618761	0.00261940889421972	Up	20.89	28.94	53.30	58.01	AT4G01560	GO:0000460,maturation of 5.8S rRNA; GO:0000470,maturation of LSU-rRNA; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009793,embryo development ending in seed dormancy; GO:0019843,rRNA binding; GO:0030687,preribosome, large subunit precursor; GO:0042134,rRNA primary transcript binding; 	--	NP_567213.1 Ribosomal RNA processing Brix domain protein [Arabidopsis thaliana]
AT4G01650	-0.944475167692186	0.38606557467038	0.0144286312901463	0.118086949163632	Down	34.42	36.99	13.95	24.07	AT4G01650	GO:0008150,biological_process; GO:0009507,chloroplast; 	--	NP_192074.1 Polyketide cyclase / dehydrase and lipid transport protein [Arabidopsis thaliana]
AT4G01710	1.39274569242218	0.561441485487622	0.0131139225533503	0.110017019091061	Up	14.09	13.55	38.90	34.79	AT4G01710	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005885,Arp2/3 protein complex; GO:0007015,actin filament organization; GO:0009825,multidimensional cell growth; GO:0010090,trichome morphogenesis; GO:0015629,actin cytoskeleton; GO:0030036,actin cytoskeleton organization; GO:0030041,actin filament polymerization; GO:0030833,regulation of actin filament polymerization; GO:0034314,Arp2/3 complex-mediated actin nucleation; GO:0042995,cell projection; GO:0051015,actin filament binding; 	ARPC5; actin related protein 2/3 complex, subunit 5; K05754; 	NP_567216.1 ARP2/3 complex 16 kDa subunit (p16-Arc) [Arabidopsis thaliana]
AT4G01880	1.23358116427203	0.576158683267244	0.0322704798314055	0.209187951889742	Up	5.32	4.52	7.16	16.51	AT4G01880	GO:0008033,tRNA processing; GO:0008168,methyltransferase activity; GO:0008175,tRNA methyltransferase activity; GO:0016740,transferase activity; GO:0030488,tRNA methylation; GO:0032259,methylation; GO:0046872,metal ion binding; GO:0106050,tRNA 2'-O-methyltransferase activity; 	--	NP_192097.2 methyltransferase [Arabidopsis thaliana]
AT4G01920	1.56574146006131	0.631651074732793	0.0131822406339848	0.110341224739933	Up	2.13	2.87	10.75	4.17	AT4G01920	GO:0003674,molecular_function; GO:0005575,cellular_component; 	--	NP_192101.1 Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]
AT4G01940	-0.724072638422206	0.222493347181059	0.0011364961903777	0.0161862858085107	Down	135.66	133.19	73.70	92.25	AT4G01940	GO:0005198,structural molecule activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016226,iron-sulfur cluster assembly; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0097428,protein maturation by iron-sulfur cluster transfer; 	--	NP_567219.1 NFU domain protein 1 [Arabidopsis thaliana]
AT4G02050	-0.828648388115994	0.338575489433435	0.0143868955455109	0.117957329307378	Down	24.77	22.54	13.57	13.50	AT4G02050	GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0012505,endomembrane system; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0042882,L-arabinose transmembrane transport; GO:0042900,arabinose transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0090406,pollen tube; 	--	KAG7614830.1 Sugar/inositol transporter [Arabidopsis thaliana x Arabidopsis arenosa]
AT4G02150	0.585149917779483	0.232074978729621	0.0116894525297606	0.100629881076808	Up	29.87	35.41	51.67	47.72	AT4G02150	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006606,protein import into nucleus; GO:0006607,NLS-bearing protein import into nucleus; GO:0006952,defense response; GO:0008139,nuclear localization sequence binding; GO:0015031,protein transport; GO:0061608,nuclear import signal receptor activity; 	KPNA5_6; importin subunit alpha-6/7; K15042; 	NP_192124.1 ARM repeat superfamily protein [Arabidopsis thaliana]
AT4G02250	-0.689457220966355	0.202940297091629	0.000680443269982003	0.0108216650822138	Down	221.19	223.92	132.74	148.20	AT4G02250	GO:0004857,enzyme inhibitor activity; GO:0030599,pectinesterase activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; 	--	NP_192134.2 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT4G02400	0.94781043848208	0.270635381504985	0.000461489388446888	0.00787451975747406	Up	12.41	13.84	29.17	22.13	AT4G02400	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:1990904,ribonucleoprotein complex; 	UTP14; U3 small nucleolar RNA-associated protein 14; K14567; 	NP_567232.3 U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]
AT4G02530	-0.791620794408719	0.260688683315828	0.00239221514739812	0.0292592290740581	Down	71.65	75.75	45.52	40.86	AT4G02530	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010206,photosystem II repair; GO:0016020,membrane; GO:0031977,thylakoid lumen; 	--	NP_001319849.1 chloroplast thylakoid lumen protein [Arabidopsis thaliana]
AT4G02620	0.67316542606085	0.238782413403109	0.00481497636107158	0.0503747785523379	Up	159.22	115.11	233.68	210.74	AT4G02620	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0016020,membrane; GO:0033180,proton-transporting V-type ATPase, V1 domain; GO:0034220,ion transmembrane transport; GO:0046961,proton-transporting ATPase activity, rotational mechanism; GO:1902600,proton transmembrane transport; 	ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F; K02151; 	NP_192171.1 vacuolar ATPase subunit F family protein [Arabidopsis thaliana]
AT4G02735	1.69020684265154	0.553383584181566	0.00225576368493857	0.027843530857376	Up	6.66	3.20	17.40	15.04	AT4G02735	GO:0005515,protein binding; GO:0019005,SCF ubiquitin ligase complex; GO:0031146,SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; 	--	NP_001328771.1 F-box SKIP17-like protein [Arabidopsis thaliana]
AT4G02900	2.17975777001952	0.858018289169018	0.0110708000774232	1	Up	0.49	0.98	2.57	4.21	AT4G02900	GO:0005227,calcium activated cation channel activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008150,biological_process; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0098655,cation transmembrane transport; 	--	NP_001328397.1 ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]
AT4G03260	1.63697044560738	0.484176747560984	0.000722394483592323	0.0113005089142027	Up	3.92	3.04	12.77	9.17	AT4G03260	GO:0000226,microtubule cytoskeleton organization; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0008017,microtubule binding; GO:0009819,drought recovery; GO:0019901,protein kinase binding; GO:0045926,negative regulation of growth; GO:0046777,protein autophosphorylation; 	--	NP_001118925.1 Outer arm dynein light chain 1 protein [Arabidopsis thaliana]
AT4G03280	-0.699394452932502	0.134480853366631	1.98540308370444e-07	8.79604473334056e-06	Down	464.50	515.38	323.27	289.21	AT4G03280	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005743,mitochondrial inner membrane; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009496,plastoquinol--plastocyanin reductase activity; GO:0009507,chloroplast; GO:0009512,cytochrome b6f complex; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009767,photosynthetic electron transport chain; GO:0009941,chloroplast envelope; GO:0010196,nonphotochemical quenching; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0043229,intracellular organelle; GO:0045158,electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity; GO:0046028,electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0055085,transmembrane transport; 	petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]; K02636; 	NP_192237.1 photosynthetic electron transfer C [Arabidopsis thaliana]
AT4G03520	-0.604979208184026	0.152341148366477	7.15074924285095e-05	0.00166738805183395	Down	547.51	508.13	401.21	302.35	AT4G03520	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0015035,protein-disulfide reductase activity; GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0043085,positive regulation of catalytic activity; 	trxA; thioredoxin 1; K03671; 	NP_192261.1 Thioredoxin superfamily protein [Arabidopsis thaliana]
AT4G04020	-0.611908032546164	0.156974326643913	9.69340391186272e-05	0.00209124653089838	Down	206.38	195.35	138.58	128.29	AT4G04020	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005829,cytosol; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009737,response to abscisic acid; GO:0010205,photoinhibition; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0031977,thylakoid lumen; 	--	NP_192311.1 fibrillin [Arabidopsis thaliana]
AT4G04460	-0.927515188452054	0.0949236708216577	1.49715141716235e-22	6.63291547496392e-20	Down	689.06	665.60	372.81	350.57	AT4G04460	GO:0004190,aspartic-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0006629,lipid metabolic process; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; GO:0046686,response to cadmium ion; 	--	NP_001190671.1 Saposin-like aspartyl protease family protein [Arabidopsis thaliana]
AT4G04640	-0.647214481381637	0.106348356868376	1.15913435954873e-09	8.40880802935789e-08	Down	788.27	690.12	463.46	496.06	AT4G04640	GO:0000275,mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); GO:0005515,protein binding; GO:0005829,cytosol; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009544,chloroplast ATP synthase complex; GO:0009579,thylakoid; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009941,chloroplast envelope; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0030234,enzyme regulator activity; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0050790,regulation of catalytic activity; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; 	ATPF1G, atpG; F-type H+-transporting ATPase subunit gamma; K02115; 	NP_567265.1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana]
AT4G04940	0.882773394907057	0.233236169126788	0.000153776181056675	0.00310682984691866	Up	17.75	14.98	30.87	30.48	AT4G04940	GO:0005515,protein binding; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:0034388,Pwp2p-containing subcomplex of 90S preribosome; GO:0110165,cellular anatomical entity; 	UTP21, WDR36; U3 small nucleolar RNA-associated protein 21; K14554; 	NP_567275.1 transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT4G05180	-0.916002785855812	0.113413062496314	6.65453693841815e-16	1.55749620694123e-13	Down	758.99	724.21	398.80	400.01	AT4G05180	GO:0005509,calcium ion binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; GO:0048046,apoplast; 	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901; 	NP_001319873.1 photosystem II subunit Q-2 [Arabidopsis thaliana]
AT4G05380	4.26860903603893	2.14127130505776	0.0462075057290383	1	Up	0.00	0.19	3.17	0.31	AT4G05380	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0006950,response to stress; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_001319874.1 P-loop nucleoside triphosphate hydrolase superfamily protein [Arabidopsis thaliana]
AT4G06599	0.92155092906331	0.414037990637565	0.0260299812355993	0.180694973266709	Up	11.68	13.09	23.09	24.60	AT4G06599	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; 	--	NP_849320.1 ubiquitin family protein [Arabidopsis thaliana]
AT4G06746	6.06626396806985	2.02214736861822	0.00270057699940856	1	Up	0.00	0.00	9.68	3.83	AT4G06746	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009873,ethylene-activated signaling pathway; 	--	NP_849340.1 related to AP2 9 [Arabidopsis thaliana]
AT4G07410	0.59711459851225	0.236406971216475	0.0115438135904916	0.0997221501323455	Up	23.45	21.88	40.25	29.24	AT4G07410	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009793,embryo development ending in seed dormancy; GO:0010073,meristem maintenance; GO:0010305,leaf vascular tissue pattern formation; GO:0010311,lateral root formation; GO:0010449,root meristem growth; GO:0035266,meristem growth; GO:0048366,leaf development; GO:0090696,post-embryonic plant organ development; GO:2000012,regulation of auxin polar transport; 	UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4; K14548; 	NP_567317.2 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT4G08455	1.41719482458049	0.552833264610581	0.010361905585816	0.092076961885421	Up	5.48	10.77	17.43	26.68	AT4G08455	GO:0005515,protein binding; GO:0016567,protein ubiquitination; 	SPOP; speckle-type POZ protein; K10523; 	NP_680660.3 BTB/POZ domain-containing protein [Arabidopsis thaliana]
AT4G08670	-1.22751745155364	0.407670127608565	0.00260341112179864	0.0311050920606184	Down	51.19	43.53	24.22	16.61	AT4G08670	GO:0005886,plasma membrane; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane; 	--	KAG7615320.1 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain [Arabidopsis thaliana x Arabidopsis arenosa]
AT4G09000	-0.587133629625123	0.122292115137288	1.57816061397522e-06	5.93244921707958e-05	Down	388.28	417.61	273.98	271.08	AT4G09000	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0007165,signal transduction; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0016020,membrane; GO:0019222,regulation of metabolic process; GO:0045309,protein phosphorylated amino acid binding; GO:0048046,apoplast; 	YWHAE; 14-3-3 protein epsilon; K06630; 	NP_001154216.1 general regulatory factor 1 [Arabidopsis thaliana]
AT4G09010	-0.935455197332518	0.258267002587388	0.000292281107456649	0.0053163447771257	Down	60.20	57.30	28.05	34.60	AT4G09010	GO:0000302,response to reactive oxygen species; GO:0004601,peroxidase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0031977,thylakoid lumen; GO:0034599,cellular response to oxidative stress; GO:0042744,hydrogen peroxide catabolic process; GO:0098869,cellular oxidant detoxification; 	E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11]; K00434; 	NP_192640.1 ascorbate peroxidase 4 [Arabidopsis thaliana]
AT4G09040	-0.615196333691765	0.294715519011756	0.0368497979901328	0.228098538211919	Down	54.54	47.00	32.82	34.61	AT4G09040	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:1990904,ribonucleoprotein complex; 	--	BAD43393.1 putative protein [Arabidopsis thaliana]
AT4G09550	1.02571198457603	0.283773863929114	0.000300881351981866	0.00544880754939423	Up	119.31	141.87	292.14	247.03	AT4G09550	GO:0000226,microtubule cytoskeleton organization; GO:0000776,kinetochore; GO:0000930,gamma-tubulin complex; GO:0000931,gamma-tubulin ring complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005640,nuclear outer membrane; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005828,kinetochore microtubule; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007052,mitotic spindle organization; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0031021,interphase microtubule organizing center; GO:0033566,gamma-tubulin complex localization; GO:0034080,CENP-A containing chromatin assembly; GO:0034508,centromere complex assembly; GO:0042393,histone binding; GO:0051415,microtubule nucleation by interphase microtubule organizing center; GO:0051418,microtubule nucleation by microtubule organizing center; GO:0072686,mitotic spindle; GO:0090307,mitotic spindle assembly; 	--	NP_001328567.1 AtGCP3 interacting protein 1 [Arabidopsis thaliana]
AT4G09650	-1.02108888222396	0.15533412948267	4.91461115540124e-11	4.76294932677753e-09	Down	311.72	326.54	155.56	164.29	AT4G09650	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006754,ATP biosynthetic process; GO:0006811,ion transport; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009772,photosynthetic electron transport in photosystem II; GO:0009773,photosynthetic electron transport in photosystem I; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0010319,stromule; GO:0015979,photosynthesis; GO:0015986,proton motive force-driven ATP synthesis; GO:0016020,membrane; GO:0045261,proton-transporting ATP synthase complex, catalytic core F(1); GO:0046933,proton-transporting ATP synthase activity, rotational mechanism; GO:0110165,cellular anatomical entity; GO:1902600,proton transmembrane transport; 	ATPF1D, atpH; F-type H+-transporting ATPase subunit delta; K02113; 	NP_192703.1 F-type H+-transporting ATPase subunit delta [Arabidopsis thaliana]
AT4G10450	0.879594852295795	0.166879227170712	1.35795729861063e-07	6.21603700710878e-06	Up	171.81	151.99	316.60	288.50	AT4G10450	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L9e, RPL9; large subunit ribosomal protein L9e; K02940; 	NP_192783.1 Ribosomal protein L6 family [Arabidopsis thaliana]
AT4G11080	-0.842401898683407	0.419687766572912	0.0447272016054153	0.257825713715231	Down	20.27	18.05	8.30	13.59	AT4G11080	GO:0000793,condensed chromosome; GO:0000794,condensed nuclear chromosome; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; 	--	NP_192846.1 HMG (high mobility group) box protein [Arabidopsis thaliana]
AT4G11190	3.94385650210953	1.5784674266911	0.0124707740207013	1	Up	0.84	0.00	7.30	6.25	AT4G11190	GO:0005576,extracellular region; GO:0009699,phenylpropanoid biosynthetic process; GO:0048046,apoplast; 	--	NP_192858.1 Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]
AT4G11290	1.04602761903639	0.378072250650598	0.00566198914920021	0.0570105319771336	Up	19.58	12.86	31.99	36.26	AT4G11290	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0006979,response to oxidative stress; GO:0009505,plant-type cell wall; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0099503,secretory vesicle; GO:0140825,lactoperoxidase activity; 	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430; 	NP_192868.1 Peroxidase superfamily protein [Arabidopsis thaliana]
AT4G11530	3.10582639747369	1.4647783978585	0.0339774879947122	1	Up	0.12	0.25	1.50	1.71	AT4G11530	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; 	--	NP_001319904.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 [Arabidopsis thaliana]
AT4G11570	-1.09555325220927	0.270756081782752	5.20393520318547e-05	0.00127831319199041	Down	53.87	64.95	28.27	28.22	AT4G11570	GO:0006468,protein phosphorylation; GO:0009231,riboflavin biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0043621,protein self-association; GO:0043726,5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity; 	PYRP2; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104]; K22912; 	NP_192894.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]
AT4G11820	-0.758449961220586	0.180746638223511	2.71424498330103e-05	0.000736766061659722	Down	114.61	130.24	81.56	65.10	AT4G11820	GO:0004421,hydroxymethylglutaryl-CoA synthase activity; GO:0006084,acetyl-CoA metabolic process; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0008299,isoprenoid biosynthetic process; GO:0009506,plasmodesma; GO:0010142,farnesyl diphosphate biosynthetic process, mevalonate pathway; GO:0016126,sterol biosynthetic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019287,isopentenyl diphosphate biosynthetic process, mevalonate pathway; 	E2.3.3.10; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]; K01641; 	NP_192919.1 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase [Arabidopsis thaliana]
AT4G12080	2.22483315631009	0.706015150472794	0.00162570974607998	1	Up	2.63	1.92	12.29	9.32	AT4G12080	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0043565,sequence-specific DNA binding; GO:0098687,chromosomal region; 	--	NP_192945.2 AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana]
AT4G12400	-2.90834512175207	0.595893766706221	1.05740164790672e-06	4.04847760564287e-05	Down	9.47	19.91	2.17	1.78	AT4G12400	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006457,protein folding; GO:0010286,heat acclimation; GO:0030544,Hsp70 protein binding; GO:0051131,chaperone-mediated protein complex assembly; GO:0051879,Hsp90 protein binding; GO:0070678,preprotein binding; 	STIP1; stress-induced-phosphoprotein 1; K09553; 	NP_001031620.1 stress-inducible protein [Arabidopsis thaliana]
AT4G12600	0.933359192457063	0.186704865174648	5.75938861852915e-07	2.31964986405371e-05	Up	129.45	132.48	269.59	238.13	AT4G12600	GO:0000398,mRNA splicing, via spliceosome; GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0030490,maturation of SSU-rRNA; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:1990904,ribonucleoprotein complex; 	SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13; K12845; 	NP_192997.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]
AT4G12870	0.594441954169143	0.163996028876176	0.000289259204036556	0.00526910488410203	Up	188.45	167.57	292.94	252.74	AT4G12870	GO:0016491,oxidoreductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; 	--	NP_193023.2 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein [Arabidopsis thaliana]
AT4G13170	0.876612309344996	0.182659272927442	1.59327102166045e-06	5.97115620051297e-05	Up	157.70	125.23	255.94	272.44	AT4G13170	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0015934,large ribosomal subunit; GO:0017148,negative regulation of translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae; K02872; 	NP_193053.1 Ribosomal protein L13 family protein [Arabidopsis thaliana]
AT4G13270	-1.27253525335457	0.455795243378841	0.00523993649903887	0.053764608991379	Down	32.18	38.55	15.62	14.06	AT4G13270	GO:0016020,membrane; 	--	NP_193063.2 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]
AT4G13720	0.942953327842599	0.46762352922921	0.0437498446809284	0.254438266885568	Up	15.26	14.44	26.59	31.55	AT4G13720	GO:0000166,nucleotide binding; GO:0005737,cytoplasm; GO:0009117,nucleotide metabolic process; GO:0009143,nucleoside triphosphate catabolic process; GO:0009204,deoxyribonucleoside triphosphate catabolic process; GO:0016787,hydrolase activity; GO:0035870,dITP diphosphatase activity; GO:0036220,ITP diphosphatase activity; GO:0036222,XTP diphosphatase activity; GO:0046872,metal ion binding; GO:0047429,nucleoside triphosphate diphosphatase activity; 	ITPA; inosine triphosphate pyrophosphatase [EC:3.6.1.-]; K01519; 	NP_001328955.1 Inosine triphosphate pyrophosphatase family protein [Arabidopsis thaliana]
AT4G13750	1.10579899465219	0.36681159446663	0.00257298106514038	0.0308384832010303	Up	1.83	1.82	4.12	3.87	AT4G13750	GO:0001708,cell fate specification; GO:0005634,nucleus; GO:0009793,embryo development ending in seed dormancy; GO:0009926,auxin polar transport; GO:0010305,leaf vascular tissue pattern formation; GO:0019827,stem cell population maintenance; GO:0048364,root development; 	--	NP_193111.2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]
AT4G13770	0.752467948164296	0.335274224553888	0.0248108031891839	0.17477456761035	Up	14.44	13.48	25.05	22.71	AT4G13770	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0009625,response to insect; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0019761,glucosinolate biosynthetic process; GO:0020037,heme binding; GO:0046872,metal ion binding; 	CYP83A1; (methylthio)alkanaldoxime N-monooxygenase [EC:1.14.14.43]; K12156; 	NP_193113.1 cytochrome P450, family 83, subfamily A, polypeptide 1 [Arabidopsis thaliana]
AT4G13970	1.01181383765221	0.44631741680615	0.023388548577845	0.167902167307967	Up	3.81	5.62	9.82	9.47	AT4G13970	GO:0008270,zinc ion binding; 	--	NP_193133.3 zinc ion binding protein [Arabidopsis thaliana]
AT4G14040	0.599850841353874	0.283491116871606	0.0343497165923627	0.217958176126987	Up	20.96	27.62	34.57	40.30	AT4G14040	GO:0005829,cytosol; GO:0008430,selenium binding; GO:0010197,polar nucleus fusion; 	SELENBP1; methanethiol oxidase [EC:1.8.3.4]; K17285; 	NP_193140.1 selenium-binding protein 2 [Arabidopsis thaliana]
AT4G14080	-1.05167730558686	0.141475967876455	1.05672467376325e-13	1.72482494447804e-11	Down	211.95	194.25	99.80	99.32	AT4G14080	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0009793,embryo development ending in seed dormancy; GO:0010584,pollen exine formation; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; 	--	NP_193144.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]
AT4G14320	0.768659360113999	0.114378922712776	1.81365095209658e-11	1.87486167172984e-09	Up	592.01	646.58	1108.28	1034.94	AT4G14320	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L44e, RPL44; large subunit ribosomal protein L44e; K02929; 	NP_001190728.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT4G14520	1.43130285136715	0.633078673830395	0.0237678689664554	0.169643842081348	Up	7.77	6.83	24.06	15.83	AT4G14520	GO:0000428,DNA-directed RNA polymerase complex; GO:0003697,single-stranded DNA binding; GO:0003727,single-stranded RNA binding; GO:0005634,nucleus; GO:0006352,DNA-templated transcription initiation; 	--	NP_001190729.1 DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]
AT4G14540	0.776211886880502	0.329752627601063	0.0185765204362892	0.141648815648582	Up	45.32	51.40	97.21	70.52	AT4G14540	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228,DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009408,response to heat; GO:0009414,response to water deprivation; GO:0016602,CCAAT-binding factor complex; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046982,protein heterodimerization activity; 	NFYB, HAP3; nuclear transcription Y subunit beta; K08065; 	NP_193190.1 nuclear factor Y, subunit B3 [Arabidopsis thaliana]
AT4G14716	-0.642367598192039	0.256143142259397	0.0121469535514844	0.10370472044471	Down	117.35	107.18	66.44	80.17	AT4G14716	GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006555,methionine metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009086,methionine biosynthetic process; GO:0010308,acireductone dioxygenase (Ni2+-requiring) activity; GO:0010309,acireductone dioxygenase [iron(II)-requiring] activity; GO:0016151,nickel cation binding; GO:0016491,oxidoreductase activity; GO:0019509,L-methionine salvage from methylthioadenosine; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; GO:0051302,regulation of cell division; 	mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]; K08967; 	NP_567443.1 acireductone dioxygenase 1 [Arabidopsis thaliana]
AT4G14880	-0.807659451619657	0.162317678331018	6.49804733166254e-07	2.56714258437178e-05	Down	240.33	210.73	120.49	141.92	AT4G14880	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0004124,cysteine synthase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006535,cysteine biosynthetic process from serine; GO:0007568,aging; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009567,double fertilization forming a zygote and endosperm; GO:0009570,chloroplast stroma; GO:0009860,pollen tube growth; GO:0016740,transferase activity; GO:0019344,cysteine biosynthetic process; GO:0046686,response to cadmium ion; GO:0048046,apoplast; 	cysK; cysteine synthase [EC:2.5.1.47]; K01738; 	NP_001190732.1 O-acetylserine (thiol) lyase (OAS-TL) isoform A1 [Arabidopsis thaliana]
AT4G15120	-4.1201185527385	1.88152055305719	0.0285401004012854	1	Down	4.43	6.64	0.58	0.00	AT4G15120	--	--	NP_567458.1 VQ motif-containing protein [Arabidopsis thaliana]
AT4G15470	-0.637425126704547	0.154828271801286	3.83866915632576e-05	0.000975792845988136	Down	297.50	258.84	186.01	177.24	AT4G15470	GO:0016020,membrane; 	TMBIM, LFG; protein lifeguard; K24205; 	NP_567466.1 Bax inhibitor-1 family protein [Arabidopsis thaliana]
AT4G15530	-0.636333340540336	0.190243659331239	0.000823320177608859	0.01259344858599	Down	52.58	61.07	31.76	42.77	AT4G15530	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006090,pyruvate metabolic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015979,photosynthesis; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016772,transferase activity, transferring phosphorus-containing groups; GO:0043231,intracellular membrane-bounded organelle; GO:0046872,metal ion binding; GO:0050242,pyruvate, phosphate dikinase activity; 	ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]; K01006; 	NP_193288.2 pyruvate orthophosphate dikinase [Arabidopsis thaliana]
AT4G15550	-0.873806551126106	0.35473695236481	0.0137683060664076	0.114015912385705	Down	25.65	22.05	12.79	13.70	AT4G15550	GO:0008194,UDP-glycosyltransferase activity; GO:0009636,response to toxic substance; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0080043,quercetin 3-O-glucosyltransferase activity; GO:0080044,quercetin 7-O-glucosyltransferase activity; 	--	NP_567471.1 indole-3-acetate beta-D-glucosyltransferase [Arabidopsis thaliana]
AT4G15730	2.43587206844937	0.696665716961598	0.000471454233028542	0.00800053318839817	Up	1.11	0.49	5.62	3.14	AT4G15730	GO:0008270,zinc ion binding; GO:0009506,plasmodesma; GO:0046872,metal ion binding; 	--	NP_193308.2 CW-type Zinc Finger [Arabidopsis thaliana]
AT4G15750	-1.24529529131012	0.35665339481774	0.000480115037086259	0.00811420576982976	Down	98.53	101.80	58.86	26.06	AT4G15750	GO:0004857,enzyme inhibitor activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; 	--	NP_567474.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT4G15770	0.704934521837377	0.228804836153764	0.00206346559685911	0.0259962251844341	Up	94.71	85.84	138.81	160.76	AT4G15770	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042255,ribosome assembly; GO:0042273,ribosomal large subunit biogenesis; 	--	NP_193312.5 RNA binding protein [Arabidopsis thaliana]
AT4G15880	0.585160121882297	0.281575989006757	0.0376945710905998	0.230800174915543	Up	23.81	22.68	39.55	31.15	AT4G15880	GO:0005634,nucleus; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0009909,regulation of flower development; GO:0009911,positive regulation of flower development; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016926,protein desumoylation; GO:0016929,deSUMOylase activity; GO:0019900,kinase binding; GO:0031965,nuclear membrane; GO:0070139,SUMO-specific endopeptidase activity; 	--	NP_001328371.1 Cysteine proteinases superfamily protein [Arabidopsis thaliana]
AT4G15910	2.04302102106665	0.63613369469769	0.0013198787759564	0.0182328465654111	Up	12.64	8.17	40.71	46.82	AT4G15910	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009631,cold acclimation; GO:0009737,response to abscisic acid; 	--	NP_193326.4 drought-induced 21 [Arabidopsis thaliana]
AT4G15920	-0.878236091840383	0.400584925905114	0.028351771204997	0.192402039345656	Down	44.53	33.70	25.10	17.93	AT4G15920	GO:0016021,integral component of membrane; 	--	NP_193327.5 Nodulin MtN3 family protein [Arabidopsis thaliana]
AT4G16000	-2.60373696490553	1.12663299766149	0.0208285356527889	1	Down	32.11	15.26	7.50	0.00	AT4G16000	GO:0008150,biological_process; 	--	NP_567481.1 hypothetical protein AT4G16000 [Arabidopsis thaliana]
AT4G16143	0.690187117736661	0.10715028289549	1.1845446400359e-10	1.0571421769529e-08	Up	240.12	229.32	372.28	397.66	AT4G16143	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006606,protein import into nucleus; GO:0006607,NLS-bearing protein import into nucleus; GO:0008139,nuclear localization sequence binding; GO:0009506,plasmodesma; GO:0015031,protein transport; GO:0061608,nuclear import signal receptor activity; 	--	NP_001154239.1 importin alpha isoform 2 [Arabidopsis thaliana]
AT4G16190	-0.734277421295794	0.0913404682892818	9.06442195279644e-16	1.97270446183228e-13	Down	998.97	1004.55	601.21	622.88	AT4G16190	GO:0000323,lytic vacuole; GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005764,lysosome; GO:0005773,vacuole; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; 	CTSF; cathepsin F [EC:3.4.22.41]; K01373; 	NP_567489.1 Papain family cysteine protease [Arabidopsis thaliana]
AT4G16210	-0.84665204126981	0.30578236125669	0.00562621223229573	0.0567424087330314	Down	64.59	62.28	29.18	42.95	AT4G16210	GO:0003824,catalytic activity; GO:0004300,enoyl-CoA hydratase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0016829,lyase activity; 	paaF, echA; enoyl-CoA hydratase [EC:4.2.1.17]; K01692; 	NP_193356.2 enoyl-CoA hydratase/isomerase A [Arabidopsis thaliana]
AT4G16480	-0.781061583411127	0.290370146989691	0.00714771763833798	0.0687877713759368	Down	34.29	26.50	18.33	17.61	AT4G16480	GO:0005366,myo-inositol:proton symporter activity; GO:0005886,plasma membrane; GO:0015293,symporter activity; GO:0015798,myo-inositol transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_001328028.1 inositol transporter 4 [Arabidopsis thaliana]
AT4G16500	-0.933499667156316	0.26156396161408	0.00035846205887746	0.00628956413065755	Down	231.64	176.76	104.86	112.74	AT4G16500	GO:0000325,plant-type vacuole; GO:0004869,cysteine-type endopeptidase inhibitor activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005829,cytosol; GO:0006952,defense response; GO:0009506,plasmodesma; GO:0010466,negative regulation of peptidase activity; GO:0010951,negative regulation of endopeptidase activity; GO:0030414,peptidase inhibitor activity; GO:0099503,secretory vesicle; 	--	NP_001319960.1 Cystatin/monellin superfamily protein [Arabidopsis thaliana]
AT4G16563	0.744606499902291	0.345444120355298	0.0311223442867147	0.204163236846481	Up	18.12	12.02	23.40	28.05	AT4G16563	GO:0003674,molecular_function; GO:0004190,aspartic-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0009505,plant-type cell wall; GO:0016787,hydrolase activity; 	--	NP_567506.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT4G16630	0.888748533035375	0.217834953695437	4.50517819447309e-05	0.00111550370264349	Up	29.06	21.30	46.70	48.14	AT4G16630	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_193396.3 DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
AT4G16650	0.614014342668575	0.305988427089663	0.0447860152439581	0.257925032080455	Up	16.61	16.07	24.34	26.55	AT4G16650	GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005975,carbohydrate metabolic process; GO:0006004,fucose metabolic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; 	--	NP_001319965.1 O-fucosyltransferase family protein [Arabidopsis thaliana]
AT4G16980	-1.18667995144608	0.469181814695133	0.0114305292936145	0.0993324749122137	Down	44.96	40.06	21.13	16.65	AT4G16980	--	--	NP_193431.2 arabinogalactan-protein family [Arabidopsis thaliana]
AT4G17340	-1.23738281393681	0.531453518353321	0.0198962205291447	0.149041434579734	Down	22.71	20.52	9.41	9.22	AT4G17340	GO:0000325,plant-type vacuole; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0006833,water transport; GO:0009705,plant-type vacuole membrane; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0042807,central vacuole; GO:0055085,transmembrane transport; 	--	NP_193465.1 tonoplast intrinsic protein 2;2 [Arabidopsis thaliana]
AT4G17390	0.699833659284945	0.104018030596509	1.72006952141042e-11	1.79306406832741e-09	Up	748.97	838.25	1312.48	1307.08	AT4G17390	GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L15e, RPL15; large subunit ribosomal protein L15e; K02877; 	NP_193470.1 Ribosomal protein L23/L15e family protein [Arabidopsis thaliana]
AT4G17470	5.11964898816515	1.33234849351729	0.000121750200996877	1	Up	0.51	0.00	5.46	13.10	AT4G17470	GO:0016787,hydrolase activity; GO:0016790,thiolester hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; GO:0098599,palmitoyl hydrolase activity; GO:0098734,macromolecule depalmitoylation; 	PPT; palmitoyl-protein thioesterase [EC:3.1.2.22]; K01074; 	NP_001190752.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT4G17483	2.12006673120869	0.590571521542497	0.000330860663058678	0.00590550579171641	Up	4.41	5.42	30.64	12.49	AT4G17483	GO:0016790,thiolester hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; 	PPT; palmitoyl-protein thioesterase [EC:3.1.2.22]; K01074; 	NP_001328380.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT4G17560	-0.90748618495705	0.349343395425742	0.00938529152943326	0.0851056589346634	Down	57.71	58.49	24.39	39.03	AT4G17560	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L19, MRPL19, rplS; large subunit ribosomal protein L19; K02884; 	NP_567531.1 Ribosomal protein L19 family protein [Arabidopsis thaliana]
AT4G17590	5.14423615162516	2.41957510668171	0.0334957074790372	1	Up	0.00	0.00	3.90	1.43	AT4G17590	GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0005730,nucleolus; GO:0008168,methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0070475,rRNA base methylation; 	--	NP_001154249.1 NOL1/NOP2/sun family protein [Arabidopsis thaliana]
AT4G17600	-0.816722860086944	0.26623907681486	0.00215763911353472	0.0269270756573422	Down	88.19	73.76	43.62	50.03	AT4G17600	GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0006355,regulation of DNA-templated transcription; GO:0009503,thylakoid light-harvesting complex; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019899,enzyme binding; GO:0042651,thylakoid membrane; GO:0042802,identical protein binding; GO:0043495,protein-membrane adaptor activity; GO:1902326,positive regulation of chlorophyll biosynthetic process; GO:1904964,positive regulation of phytol biosynthetic process; GO:1904966,positive regulation of vitamin E biosynthetic process; 	--	NP_567532.1 Chlorophyll A-B binding family protein [Arabidopsis thaliana]
AT4G17940	-0.77282963225334	0.331127924979042	0.0195993505193589	0.147530305335344	Down	49.70	42.76	28.63	26.29	AT4G17940	GO:0003674,molecular_function; GO:0005515,protein binding; 	--	NP_567545.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
AT4G17950	0.66967080793708	0.245623196740906	0.00640264094665388	0.063328060111709	Up	34.79	30.43	54.45	50.94	AT4G17950	GO:0003677,DNA binding; GO:0003680,minor groove of adenine-thymine-rich DNA binding; GO:0005515,protein binding; GO:0005575,cellular_component; GO:0005634,nucleus; 	--	NP_567546.1 AT hook motif DNA-binding family protein [Arabidopsis thaliana]
AT4G17970	2.01450961442216	0.986567354925105	0.0411576573550325	1	Up	1.11	0.61	2.01	5.16	AT4G17970	GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0008272,sulfate transport; GO:0008509,anion transmembrane transporter activity; GO:0009705,plant-type vacuole membrane; GO:0010118,stomatal movement; GO:0012505,endomembrane system; GO:0015743,malate transport; GO:0016020,membrane; GO:0098656,anion transmembrane transport; 	--	NP_193531.1 aluminum-activated, malate transporter 12 [Arabidopsis thaliana]
AT4G18020	-1.07773452597503	0.544030786122384	0.0475893073651615	0.268216882264801	Down	11.14	7.85	3.91	5.29	AT4G18020	GO:0000160,phosphorelay signal transduction system; GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0045893,positive regulation of DNA-templated transcription; 	--	NP_001190759.1 CheY-like two-component responsive regulator family protein [Arabidopsis thaliana]
AT4G18190	-1.80144154362921	0.75497177661848	0.017027912356153	1	Down	10.06	7.30	3.48	1.49	AT4G18190	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport; 	--	NP_193553.2 purine permease 6 [Arabidopsis thaliana]
AT4G18197	1.61597266957223	0.808707813761104	0.045693277551291	1	Up	2.60	1.54	6.62	6.29	AT4G18197	GO:0005345,purine nucleobase transmembrane transporter activity; GO:0006863,purine nucleobase transport; GO:0015211,purine nucleoside transmembrane transporter activity; GO:0015860,purine nucleoside transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:1904823,purine nucleobase transmembrane transport; 	--	NP_001031663.1 purine permease 7 [Arabidopsis thaliana]
AT4G18230	0.975639999963511	0.252180516949743	0.000109365165605494	0.00231910235783957	Up	42.91	50.62	84.88	102.23	AT4G18230	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0006488,dolichol-linked oligosaccharide biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0031965,nuclear membrane; GO:0043541,UDP-N-acetylglucosamine transferase complex; 	ALG14; beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]; K07441; 	NP_001328332.1 UDP-N-acetylglucosamine transferase subunit ALG14-like protein [Arabidopsis thaliana]
AT4G18350	0.956786481034062	0.443507258497706	0.0309808446881926	0.203509341489654	Up	8.42	5.73	10.98	17.09	AT4G18350	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009688,abscisic acid biosynthetic process; GO:0010436,carotenoid dioxygenase activity; GO:0016121,carotene catabolic process; GO:0016491,oxidoreductase activity; GO:0016702,oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; GO:0045549,9-cis-epoxycarotenoid dioxygenase activity; GO:0046872,metal ion binding; GO:0051213,dioxygenase activity; 	NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]; K09840; 	NP_193569.1 nine-cis-epoxycarotenoid dioxygenase 2 [Arabidopsis thaliana]
AT4G18540	1.77965519898635	0.528284513724873	0.000755115728071387	0.011723667843211	Up	5.66	4.58	27.03	8.55	AT4G18540	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0016020,membrane; 	--	NP_001329805.1 transmembrane protein [Arabidopsis thaliana]
AT4G18593	0.8586008741427	0.293770801989983	0.00347022246966937	0.0391702545370779	Up	63.90	63.63	106.98	128.42	AT4G18593	GO:0006470,protein dephosphorylation; GO:0008138,protein tyrosine/serine/threonine phosphatase activity; 	--	NP_001328432.1 dual specificity protein phosphatase-like protein [Arabidopsis thaliana]
AT4G18710	0.776186077246567	0.174899437303183	9.08411293656256e-06	0.000278931735094204	Up	71.57	78.45	136.80	124.00	AT4G18710	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0005938,cell cortex; GO:0006468,protein phosphorylation; GO:0007165,signal transduction; GO:0009729,detection of brassinosteroid stimulus; GO:0009733,response to auxin; GO:0009742,brassinosteroid mediated signaling pathway; GO:0009825,multidimensional cell growth; GO:0009965,leaf morphogenesis; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046777,protein autophosphorylation; GO:0046827,positive regulation of protein export from nucleus; GO:0048765,root hair cell differentiation; GO:0106310,protein serine kinase activity; GO:1900458,negative regulation of brassinosteroid mediated signaling pathway; 	BIN2; protein brassinosteroid insensitive 2 [EC:2.7.11.1]; K14502; 	NP_193606.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT4G18730	0.747757367991167	0.158919826007301	2.53556168044783e-06	8.98675504170154e-05	Up	230.02	289.87	445.01	441.71	AT4G18730	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L11e, RPL11; large subunit ribosomal protein L11e; K02868; 	NP_191429.1 Ribosomal L5P family protein [Arabidopsis thaliana]
AT4G19000	3.52475354350558	1.36366800423734	0.00974470024570204	1	Up	0.38	0.21	2.72	4.19	AT4G19000	GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0006414,translational elongation; GO:0009742,brassinosteroid mediated signaling pathway; GO:0032784,regulation of DNA-templated transcription elongation; 	--	NP_001319989.1 Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]
AT4G19210	0.676897387128321	0.15015269829088	6.54230481141988e-06	0.000210252049703792	Up	81.58	99.86	148.12	146.51	AT4G19210	GO:0000054,ribosomal subunit export from nucleus; GO:0000166,nucleotide binding; GO:0005506,iron ion binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006413,translational initiation; GO:0006415,translational termination; GO:0016020,membrane; GO:0043024,ribosomal small subunit binding; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; 	--	NP_193656.2 RNAse l inhibitor protein 2 [Arabidopsis thaliana]
AT4G19610	0.895462114818735	0.305065055638157	0.00333208952590283	0.0378175394042311	Up	9.75	9.88	18.17	18.94	AT4G19610	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005730,nucleolus; GO:0016607,nuclear speck; 	--	NP_193696.3 nucleotide/nucleic acid binding protein [Arabidopsis thaliana]
AT4G19840	-0.595231629038411	0.302079869569708	0.0487874454386134	0.272616333633333	Down	55.96	70.89	38.71	46.84	AT4G19840	GO:0009625,response to insect; GO:0030246,carbohydrate binding; GO:0043394,proteoglycan binding; 	--	NP_193719.1 phloem protein 2-A1 [Arabidopsis thaliana]
AT4G19865	-1.57369729522011	0.555945625856437	0.00464509610585804	0.0491658849771067	Down	11.50	19.17	6.00	4.40	AT4G19865	GO:0003674,molecular_function; GO:0005515,protein binding; 	--	NP_849411.1 Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]
AT4G20050	-1.44928433918551	0.204273407170772	1.29514061569247e-12	1.70917226996437e-10	Down	85.18	99.72	34.83	33.94	AT4G20050	GO:0004650,polygalacturonase activity; GO:0005576,extracellular region; GO:0008152,metabolic process; GO:0009556,microsporogenesis; GO:0010584,pollen exine formation; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity; GO:0071555,cell wall organization; 	--	NP_001329638.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT4G20420	-1.39544404340314	0.304506326577203	4.5913366163426e-06	0.000153106265391747	Down	134.35	120.05	48.77	49.55	AT4G20420	GO:0008150,biological_process; 	--	NP_193775.1 Tapetum specific protein TAP35/TAP44 [Arabidopsis thaliana]
AT4G20480	0.699867941870834	0.343083138887789	0.0413566146573168	0.245432920725534	Up	29.36	23.79	42.29	45.58	AT4G20480	GO:0003674,molecular_function; GO:0004519,endonuclease activity; GO:0004540,ribonuclease activity; GO:0005777,peroxisome; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0035194,post-transcriptional gene silencing by RNA; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1903231,mRNA base-pairing post-transcriptional repressor activity; 	--	NP_567602.1 Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]
AT4G20980	0.856415560887639	0.150718197312094	1.32949191608105e-08	7.77940906555919e-07	Up	85.75	75.40	138.51	158.28	AT4G20980	GO:0001732,formation of cytoplasmic translation initiation complex; GO:0002183,cytoplasmic translational initiation; GO:0002191,cap-dependent translational initiation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005852,eukaryotic translation initiation factor 3 complex; GO:0006412,translation; GO:0006413,translational initiation; GO:0016282,eukaryotic 43S preinitiation complex; GO:0033290,eukaryotic 48S preinitiation complex; GO:0098808,mRNA cap binding; 	EIF3D; translation initiation factor 3 subunit D; K03251; 	NP_001031683.1 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [Arabidopsis thaliana]
AT4G21040	-2.21968100028446	0.627015350739675	0.000400014225380789	0.00692074820899399	Down	18.77	35.37	3.38	8.69	AT4G21040	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; 	--	NP_193836.1 Dof-type zinc finger domain-containing protein [Arabidopsis thaliana]
AT4G21110	0.760737106477065	0.314071487929606	0.0154277837369025	0.124032182278857	Up	64.19	51.15	106.32	92.11	AT4G21110	GO:0000398,mRNA splicing, via spliceosome; GO:0005634,nucleus; GO:0005681,spliceosomal complex; 	BUD31, G10; bud site selection protein 31; K12873; 	NP_001329615.1 G10 family protein [Arabidopsis thaliana]
AT4G21170	-1.22989945608659	0.612683699019975	0.0447074016328507	0.257825713715231	Down	8.80	7.32	1.92	5.18	AT4G21170	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009536,plastid; 	--	NP_001320017.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
AT4G21190	1.62051257628175	0.633688351327518	0.0105497122070587	0.0935448033799598	Up	4.56	4.18	16.43	10.80	AT4G21190	GO:0003674,molecular_function; GO:0005515,protein binding; 	--	NP_567622.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]
AT4G21192	1.6161746545927	0.778546186616023	0.0379043145839235	1	Up	11.57	9.54	31.94	33.92	AT4G21192	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0008150,biological_process; 	--	NP_001078417.1 Cytochrome c oxidase biogenesis protein Cmc1-like protein [Arabidopsis thaliana]
AT4G21280	-0.778207289161177	0.127947790438043	1.18525849092563e-09	8.54833231391422e-08	Down	522.38	563.84	331.45	311.70	AT4G21280	GO:0003729,mRNA binding; GO:0005509,calcium ion binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009654,photosystem II oxygen evolving complex; GO:0009767,photosynthetic electron transport chain; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019898,extrinsic component of membrane; GO:0031977,thylakoid lumen; GO:0045156,electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; 	psbQ; photosystem II oxygen-evolving enhancer protein 3; K08901; 	NP_193860.1 photosystem II subunit QA [Arabidopsis thaliana]
AT4G21380	-1.3015347173234	0.626393146718682	0.037725571937452	0.230876033489932	Down	5.13	6.85	3.83	1.02	AT4G21380	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004675,transmembrane receptor protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0007178,transmembrane receptor protein serine/threonine kinase signaling pathway; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0031625,ubiquitin protein ligase binding; GO:0048544,recognition of pollen; GO:0106310,protein serine kinase activity; 	--	NP_193869.1 receptor kinase 3 [Arabidopsis thaliana]
AT4G21450	0.627860034494185	0.284155787293313	0.0271355249603284	0.186490962400484	Up	35.36	41.30	70.39	49.57	AT4G21450	GO:0005515,protein binding; GO:0005789,endoplasmic reticulum membrane; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0061817,endoplasmic reticulum-plasma membrane tethering; GO:0090158,endoplasmic reticulum membrane organization; 	--	NP_567627.1 PapD-like superfamily protein [Arabidopsis thaliana]
AT4G21570	1.03871681553682	0.347436587542438	0.00279289324542506	0.0329261706672311	Up	17.78	17.96	39.80	34.71	AT4G21570	GO:0005783,endoplasmic reticulum; GO:0016020,membrane; 	--	NP_193888.1 organic solute transporter ostalpha protein (DUF300) [Arabidopsis thaliana]
AT4G21590	-0.806888691163913	0.229738203063207	0.000444397597895858	0.00760379614054913	Down	97.42	131.23	69.40	63.23	AT4G21590	GO:0000014,single-stranded DNA endodeoxyribonuclease activity; GO:0003676,nucleic acid binding; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004521,endoribonuclease activity; GO:0006308,DNA catabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0046872,metal ion binding; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; 	E3.1.30.1; nuclease S1 [EC:3.1.30.1]; K05986; 	NP_001078420.1 endonuclease 3 [Arabidopsis thaliana]
AT4G21680	0.963166350059832	0.425842127638782	0.023710252642535	0.169427237344842	Up	11.52	5.38	16.40	17.16	AT4G21680	GO:0005886,plasma membrane; GO:0010167,response to nitrate; GO:0015112,nitrate transmembrane transporter activity; GO:0015293,symporter activity; GO:0015706,nitrate transmembrane transport; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0042128,nitrate assimilation; GO:0046686,response to cadmium ion; GO:0055085,transmembrane transport; 	--	NP_193899.2 NITRATE TRANSPORTER 1.8 [Arabidopsis thaliana]
AT4G21810	-0.947876039768175	0.461263104203228	0.0398831173423261	0.240282077522682	Down	29.01	40.99	25.25	11.21	AT4G21810	GO:0000839,Hrd1p ubiquitin ligase ERAD-L complex; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006950,response to stress; GO:0016020,membrane; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0051787,misfolded protein binding; GO:1990381,ubiquitin-specific protease binding; 	DERL2_3; Derlin-2/3; K13989; 	NP_193912.3 DERLIN-2.1 [Arabidopsis thaliana]
AT4G22080	-1.75082729621019	0.426694024823908	4.07407107837533e-05	0.00102098690358073	Down	23.33	27.60	7.69	7.69	AT4G22080	GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; 	pel; pectate lyase [EC:4.2.2.2]; K01728; 	NP_193939.1 root hair specific 14 [Arabidopsis thaliana]
AT4G22105	-2.85494447288419	1.33031708867378	0.0318679412991293	1	Down	16.86	14.63	1.28	3.29	AT4G22105	GO:0005576,extracellular region; GO:0006952,defense response; GO:0007165,signal transduction; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001031693.1 SCR-like 26 [Arabidopsis thaliana]
AT4G22120	-0.602700559527805	0.256335461737378	0.0187120657944583	0.142406856552304	Down	27.82	26.80	19.96	16.48	AT4G22120	GO:0005227,calcium activated cation channel activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006812,cation transport; GO:0008381,mechanosensitive ion channel activity; GO:0016020,membrane; GO:0034220,ion transmembrane transport; GO:0042802,identical protein binding; GO:0098655,cation transmembrane transport; 	--	NP_001078425.1 ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]
AT4G22240	-0.712867196984498	0.0965618717663289	1.55354460871349e-13	2.43945833811276e-11	Down	930.13	914.66	562.77	581.21	AT4G22240	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010287,plastoglobule; GO:0031977,thylakoid lumen; 	--	NP_193955.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]
AT4G22380	0.804527257533279	0.313354533003781	0.0102444695717639	0.0912950036190596	Up	58.72	63.88	109.87	107.61	AT4G22380	GO:0000398,mRNA splicing, via spliceosome; GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0030490,maturation of SSU-rRNA; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:1990904,ribonucleoprotein complex; 	SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13; K12845; 	NP_193969.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]
AT4G22570	0.633356081537187	0.201868663179288	0.0017041499636876	0.022252610841626	Up	115.33	120.55	198.05	173.23	AT4G22570	GO:0003999,adenine phosphoribosyltransferase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006166,purine ribonucleoside salvage; GO:0006168,adenine salvage; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0044209,AMP salvage; 	APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7]; K00759; 	NP_193988.1 adenine phosphoribosyl transferase 3 [Arabidopsis thaliana]
AT4G22755	-1.05321226135624	0.461404462798374	0.0224526076682574	0.162499765533683	Down	23.27	27.04	15.02	9.41	AT4G22755	GO:0000254,C-4 methylsterol oxidase activity; GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006629,lipid metabolic process; GO:0006694,steroid biosynthetic process; GO:0008202,steroid metabolic process; GO:0008610,lipid biosynthetic process; GO:0016020,membrane; GO:0016126,sterol biosynthetic process; GO:0016491,oxidoreductase activity; 	SMO1; plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase [EC:1.14.18.10]; K14423; 	NP_567669.1 methylsterol monooxygenase 1-3 [Arabidopsis thaliana]
AT4G22780	-0.917314161551054	0.336832049500405	0.00646220445073724	0.0637230891982476	Down	29.33	27.28	16.25	14.14	AT4G22780	GO:0005829,cytosol; GO:0016597,amino acid binding; GO:0071456,cellular response to hypoxia; 	--	NP_001328982.1 ACT domain repeat 7 [Arabidopsis thaliana]
AT4G22820	0.716237200613545	0.201097880090365	0.000368552851640818	0.00643929313324556	Up	151.78	160.52	221.79	300.65	AT4G22820	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0008270,zinc ion binding; GO:0016567,protein ubiquitination; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0098542,defense response to other organism; 	--	NP_194013.1 A20/AN1-like zinc finger family protein [Arabidopsis thaliana]
AT4G23080	-4.92725114124814	2.18467336535985	0.0241099886255986	1	Down	1.34	2.11	0.00	0.00	AT4G23080	GO:0016020,membrane; 	--	NP_001320038.1 transmembrane protein, putative (DUF239) [Arabidopsis thaliana]
AT4G23600	2.08711899670565	0.1978096554874	5.01800583346711e-26	3.45824235356441e-23	Up	28.47	28.30	122.23	122.89	AT4G23600	GO:0000325,plant-type vacuole; GO:0003824,catalytic activity; GO:0004121,cystathionine beta-lyase activity; GO:0005829,cytosol; GO:0006520,cellular amino acid metabolic process; GO:0008483,transaminase activity; GO:0009058,biosynthetic process; GO:0009611,response to wounding; GO:0009737,response to abscisic acid; GO:0009753,response to jasmonic acid; GO:0010188,response to microbial phytotoxin; GO:0016829,lyase activity; GO:0030170,pyridoxal phosphate binding; GO:0042538,hyperosmotic salinity response; GO:0044540,L-cystine L-cysteine-lyase (deaminating); GO:0048046,apoplast; 	CORI3; L-cystine beta-lyase [EC:4.4.1.35]; K21623; 	NP_194091.1 Tyrosine transaminase family protein [Arabidopsis thaliana]
AT4G23630	-0.653053598460315	0.140280835899445	3.23462039606041e-06	0.000111703285793059	Down	340.12	308.82	205.81	213.76	AT4G23630	GO:0000325,plant-type vacuole; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0009617,response to bacterium; GO:0016020,membrane; GO:0071782,endoplasmic reticulum tubular network; GO:0071786,endoplasmic reticulum tubular network organization; GO:0098554,cytoplasmic side of endoplasmic reticulum membrane; 	--	NP_001328059.1 VIRB2-interacting protein 1 [Arabidopsis thaliana]
AT4G23690	-0.625343338515429	0.254898932543141	0.0141552558534109	0.11644293691085	Down	117.56	112.32	68.81	83.07	AT4G23690	GO:0005576,extracellular region; GO:0009699,phenylpropanoid biosynthetic process; GO:0042349,guiding stereospecific synthesis activity; GO:0042802,identical protein binding; GO:0042803,protein homodimerization activity; GO:0048046,apoplast; GO:0050790,regulation of catalytic activity; GO:1901599,(-)-pinoresinol biosynthetic process; 	--	NP_194100.1 Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]
AT4G23840	0.789432260871644	0.350033063585288	0.0241140221328413	0.171325569620788	Up	9.93	11.34	18.25	19.10	AT4G23840	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005575,cellular_component; 	--	CAD5328855.1 unnamed protein product [Arabidopsis thaliana]
AT4G24260	1.4226435953163	0.501316808656395	0.00454237184889846	0.0483700873169449	Up	3.61	3.44	10.04	9.13	AT4G24260	GO:0000272,polysaccharide catabolic process; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008810,cellulase activity; GO:0009624,response to nematode; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030245,cellulose catabolic process; GO:0071555,cell wall organization; 	E3.2.1.4; endoglucanase [EC:3.2.1.4]; K01179; 	NP_194157.1 glycosyl hydrolase 9A3 [Arabidopsis thaliana]
AT4G24380	-0.784502853540945	0.213727786830244	0.000242009953313589	0.00456945733767896	Down	116.49	114.26	75.24	60.45	AT4G24380	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0016020,membrane; GO:0016787,hydrolase activity; 	--	NP_567701.1 dihydrofolate reductase [Arabidopsis thaliana]
AT4G24430	-2.15756970039277	0.885822685593765	0.0148643328029098	1	Down	3.74	4.11	0.70	1.12	AT4G24430	GO:0000325,plant-type vacuole; GO:0003824,catalytic activity; GO:0005576,extracellular region; GO:0005975,carbohydrate metabolic process; GO:0016829,lyase activity; GO:0030246,carbohydrate binding; GO:0102210,rhamnogalacturonan endolyase activity; GO:1901575,organic substance catabolic process; 	RGL4, rhiE; rhamnogalacturonan endolyase [EC:4.2.2.23]; K18195; 	NP_567703.4 Rhamnogalacturonate lyase family protein [Arabidopsis thaliana]
AT4G24460	-1.33730648392617	0.516040616133377	0.00955654157954889	0.0864059025468688	Down	13.20	13.37	6.17	4.44	AT4G24460	GO:0002229,defense response to oomycetes; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0034635,glutathione transport; GO:0046686,response to cadmium ion; 	--	NP_001329790.1 CRT (chloroquine-resistance transporter)-like transporter 2 [Arabidopsis thaliana]
AT4G24480	-1.14411690168929	0.560750645030894	0.0413173732207943	0.245432920725534	Down	6.16	4.46	3.04	1.80	AT4G24480	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; 	--	NP_001329470.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT4G24640	-0.836359293561633	0.199849824139002	2.85242875175096e-05	0.000765895642109753	Down	245.92	201.35	129.83	124.61	AT4G24640	GO:0000325,plant-type vacuole; GO:0004857,enzyme inhibitor activity; GO:0008150,biological_process; GO:0043086,negative regulation of catalytic activity; 	--	NP_194195.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT4G24680	0.721378850830825	0.220109347638196	0.00104780521728121	0.0152201682908353	Up	11.81	13.82	21.66	21.27	AT4G24680	GO:0006325,chromatin organization; GO:0040029,epigenetic regulation of gene expression; 	--	NP_001329062.1 modifier of snc1 [Arabidopsis thaliana]
AT4G24740	0.806764644290019	0.242663984388261	0.000885402883250063	0.013345592669158	Up	34.60	31.10	54.25	62.74	AT4G24740	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0004713,protein tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006397,mRNA processing; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0046777,protein autophosphorylation; GO:0106310,protein serine kinase activity; 	E2.7.12.1; dual-specificity kinase [EC:2.7.12.1]; K08287; 	NP_001329105.1 LAMMER-type protein kinase AFC2 [Arabidopsis thaliana]
AT4G24750	-1.34463149128031	0.336186917024107	6.34350436040252e-05	0.00149887945887225	Down	47.98	64.74	19.19	26.16	AT4G24750	GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009536,plastid; 	--	NP_194206.2 Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]
AT4G24820	0.6856359461189	0.108037588404221	2.20594757176014e-10	1.81223706143606e-08	Up	314.00	294.67	489.65	505.37	AT4G24820	GO:0000502,proteasome complex; GO:0005634,nucleus; GO:0005829,cytosol; GO:0030163,protein catabolic process; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; 	PSMD6, RPN7; 26S proteasome regulatory subunit N7; K03037; 	NP_567709.1 26S proteasome regulatory subunit Rpn7 [Arabidopsis thaliana]
AT4G24960	-0.984542203448529	0.233967219221347	2.57601187989213e-05	0.000702317085056305	Down	204.06	174.44	100.87	93.29	AT4G24960	GO:0003674,molecular_function; GO:0009409,response to cold; GO:0009414,response to water deprivation; GO:0009555,pollen development; GO:0009737,response to abscisic acid; GO:0009908,flower development; GO:0010507,negative regulation of autophagy; GO:0016020,membrane; GO:0042538,hyperosmotic salinity response; 	--	NP_567713.1 HVA22 homologue D [Arabidopsis thaliana]
AT4G25010	-1.20811415837044	0.41509032470915	0.00360868303050459	0.040475328203806	Down	32.96	30.44	13.56	14.36	AT4G25010	GO:0005886,plasma membrane; GO:0008515,sucrose transmembrane transporter activity; GO:0008643,carbohydrate transport; GO:0009901,anther dehiscence; GO:0015770,sucrose transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; GO:0080112,seed growth; GO:1905200,gibberellic acid transmembrane transport; GO:1905201,gibberellin transmembrane transporter activity; 	--	NP_194231.1 Nodulin MtN3 family protein [Arabidopsis thaliana]
AT4G25040	-0.609931733862521	0.217724955061527	0.00508835482777196	0.0524696937975986	Down	188.16	164.14	117.09	117.54	AT4G25040	GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0016020,membrane; GO:0051539,4 iron, 4 sulfur cluster binding; 	--	NP_194234.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]
AT4G25050	-0.591443591886784	0.17707537571504	0.000837582263287237	0.0127330980098997	Down	320.72	329.03	233.96	203.41	AT4G25050	GO:0000036,acyl carrier activity; GO:0005829,cytosol; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0006952,defense response; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009627,systemic acquired resistance; GO:0009941,chloroplast envelope; GO:0042335,cuticle development; 	--	NP_001190831.1 acyl carrier protein 4 [Arabidopsis thaliana]
AT4G25100	-4.33615052077607	0.535107901315778	5.34793598359841e-16	1.31712194959135e-13	Down	71.50	78.98	5.81	1.36	AT4G25100	GO:0004784,superoxide dismutase activity; GO:0005507,copper ion binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006801,superoxide metabolic process; GO:0007623,circadian rhythm; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009642,response to light intensity; GO:0009941,chloroplast envelope; GO:0010193,response to ozone; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019430,removal of superoxide radicals; GO:0019904,protein domain specific binding; GO:0031969,chloroplast membrane; GO:0042644,chloroplast nucleoid; GO:0046686,response to cadmium ion; GO:0046688,response to copper ion; GO:0046872,metal ion binding; 	SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]; K04564; 	NP_001190834.1 Fe superoxide dismutase 1 [Arabidopsis thaliana]
AT4G25110	-1.34962773695217	0.665033449158578	0.0424162100018825	1	Down	7.46	9.83	3.76	3.11	AT4G25110	GO:0004197,cysteine-type endopeptidase activity; GO:0006508,proteolysis; GO:0006952,defense response; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; GO:0043069,negative regulation of programmed cell death; 	--	NP_194241.3 metacaspase 2 [Arabidopsis thaliana]
AT4G25340	0.767744496453128	0.242774788860592	0.0015648884705324	0.0209411450668333	Up	27.47	30.72	49.80	50.86	AT4G25340	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006334,nucleosome assembly; GO:0016853,isomerase activity; GO:0042393,histone binding; 	--	NP_567717.1 FK506 BINDING PROTEIN 53 [Arabidopsis thaliana]
AT4G25370	-0.924612330813077	0.272426721908109	0.000688833518295615	0.0108799182055071	Down	80.06	100.92	51.30	45.38	AT4G25370	GO:0005515,protein binding; GO:0005829,cytosol; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; 	--	NP_567718.1 Double Clp-N motif protein [Arabidopsis thaliana]
AT4G25570	-0.639807874760162	0.247196838319939	0.00964641957216359	0.0869649962156172	Down	83.10	76.37	52.04	51.98	AT4G25570	GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005773,vacuole; GO:0005774,vacuolar membrane; GO:0009507,chloroplast; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0019904,protein domain specific binding; GO:0046872,metal ion binding; GO:0055085,transmembrane transport; GO:0140571,transmembrane ascorbate ferrireductase activity; 	--	NP_001328918.1 Cytochrome b561/ferric reductase transmembrane protein family [Arabidopsis thaliana]
AT4G25630	1.14951035309326	0.159329685111974	5.40667871945287e-13	7.37031313349591e-11	Up	104.62	128.35	268.42	256.32	AT4G25630	GO:0000494,box C/D RNA 3'-end processing; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0004540,ribonuclease activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005829,cytosol; GO:0006364,rRNA processing; GO:0006952,defense response; GO:0008168,methyltransferase activity; GO:0008649,rRNA methyltransferase activity; GO:0016592,mediator complex; GO:0016740,transferase activity; GO:0030515,snoRNA binding; GO:0031167,rRNA methylation; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0032259,methylation; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1990258,histone glutamine methylation; GO:1990259,histone-glutamine methyltransferase activity; GO:1990904,ribonucleoprotein complex; 	NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]; K14563; 	NP_567724.1 fibrillarin 2 [Arabidopsis thaliana]
AT4G25650	-0.66321473253386	0.279045676612947	0.0174671224572891	0.136209534629892	Down	37.93	31.27	19.28	25.31	AT4G25650	GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009528,plastid inner membrane; GO:0009536,plastid; GO:0009706,chloroplast inner membrane; GO:0009941,chloroplast envelope; GO:0010277,chlorophyllide a oxygenase [overall] activity; GO:0015031,protein transport; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; 	--	NP_567725.1 ACD1-like protein [Arabidopsis thaliana]
AT4G25660	0.887785152852059	0.333581777312474	0.00778229579715118	0.0737737877215899	Up	24.41	28.84	51.41	48.58	AT4G25660	GO:0008233,peptidase activity; GO:0016579,protein deubiquitination; GO:0070646,protein modification by small protein removal; GO:0101005,deubiquitinase activity; 	--	NP_194296.1 PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]
AT4G25680	0.617558991672041	0.226340720302937	0.00636330315157101	0.0630989413231322	Up	74.39	76.00	131.60	102.31	AT4G25680	GO:0008233,peptidase activity; GO:0016579,protein deubiquitination; GO:0070646,protein modification by small protein removal; GO:0101005,deubiquitinase activity; 	--	NP_194298.1 PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]
AT4G25730	0.648579454517748	0.178877963124851	0.000288044965994311	0.00525470265170505	Up	34.49	38.53	58.57	57.70	AT4G25730	GO:0000453,enzyme-directed rRNA 2'-O-methylation; GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466,maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0001510,RNA methylation; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0008649,rRNA methyltransferase activity; GO:0008650,rRNA (uridine-2'-O-)-methyltransferase activity; GO:0016435,rRNA (guanine) methyltransferase activity; GO:0016740,transferase activity; GO:0030687,preribosome, large subunit precursor; GO:0031167,rRNA methylation; GO:0032259,methylation; GO:0042254,ribosome biogenesis; 	--	NP_194303.2 FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
AT4G25890	0.757976313298387	0.235937712549824	0.00131533877935914	0.018190387467057	Up	130.81	163.80	224.97	281.98	AT4G25890	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006414,translational elongation; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-LP1, RPLP1; large subunit ribosomal protein LP1; K02942; 	NP_194319.1 60S acidic ribosomal protein family [Arabidopsis thaliana]
AT4G26190	0.75687133937434	0.273091075361001	0.00557990337976449	0.0563670207051942	Up	11.37	9.90	16.90	19.68	AT4G26190	GO:0004721,phosphoprotein phosphatase activity; GO:0005634,nucleus; GO:0016787,hydrolase activity; 	--	NP_001328350.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]
AT4G26230	0.60167287063486	0.213998983483214	0.00493005420287251	0.0513064785122764	Up	174.42	162.37	276.52	242.21	AT4G26230	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L31e, RPL31; large subunit ribosomal protein L31e; K02910; 	NP_194353.1 Ribosomal protein L31e family protein [Arabidopsis thaliana]
AT4G26270	1.43568007066001	0.165044651544928	3.35597341305974e-18	1.15641250525017e-15	Up	75.07	57.63	189.84	175.00	AT4G26270	GO:0000166,nucleotide binding; GO:0003824,catalytic activity; GO:0003872,6-phosphofructokinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006002,fructose 6-phosphate metabolic process; GO:0006096,glycolytic process; GO:0008152,metabolic process; GO:0010053,root epidermal cell differentiation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061615,glycolytic process through fructose-6-phosphate; GO:0071456,cellular response to hypoxia; 	pfkA, PFK; 6-phosphofructokinase 1 [EC:2.7.1.11]; K00850; 	NP_567742.1 phosphofructokinase 3 [Arabidopsis thaliana]
AT4G26480	1.12474259983471	0.286950814742447	8.86829912495288e-05	0.00195401866154601	Up	31.59	25.28	59.34	66.92	AT4G26480	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0048024,regulation of mRNA splicing, via spliceosome; 	--	NP_001320071.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana]
AT4G26530	-0.592728645621234	0.242549924808479	0.0145359489546729	0.118675487653322	Down	65.26	78.66	53.58	43.10	AT4G26530	GO:0003729,mRNA binding; GO:0004332,fructose-bisphosphate aldolase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0016829,lyase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process; 	ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]; K01623; 	NP_001031721.1 Aldolase superfamily protein [Arabidopsis thaliana]
AT4G26555	-1.19299011558418	0.497973032285518	0.0165890138224273	0.13157718444195	Down	22.98	34.31	13.34	12.07	AT4G26555	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0009644,response to high light intensity; GO:0016853,isomerase activity; GO:0031647,regulation of protein stability; GO:0031977,thylakoid lumen; 	--	NP_001328908.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT4G26600	0.93426106206779	0.331949567570818	0.00488582127218575	0.0509316074634153	Up	9.18	9.49	19.20	17.00	AT4G26600	GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042254,ribosome biogenesis; GO:0070475,rRNA base methylation; 	--	NP_001328282.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT4G26650	0.769851583547173	0.374128448823314	0.0396170214608462	0.239264435843134	Up	11.79	17.28	20.43	30.06	AT4G26650	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006417,regulation of translation; 	MSI; RNA-binding protein Musashi; K14411; 	NP_567753.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]
AT4G26780	0.810473463256307	0.249692304464412	0.0011708454944535	0.0165613892345447	Up	42.38	54.43	98.42	73.62	AT4G26780	GO:0000166,nucleotide binding; GO:0000774,adenyl-nucleotide exchange factor activity; GO:0001405,PAM complex, Tim23 associated import motor; GO:0005507,copper ion binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0006457,protein folding; GO:0009408,response to heat; GO:0010286,heat acclimation; GO:0030150,protein import into mitochondrial matrix; GO:0042803,protein homodimerization activity; GO:0046872,metal ion binding; GO:0051082,unfolded protein binding; GO:0051087,chaperone binding; 	--	NP_567757.1 Co-chaperone GrpE family protein [Arabidopsis thaliana]
AT4G26810	1.05803340855776	0.476900879238226	0.0265166456979005	0.183252919154572	Up	23.36	38.51	73.59	56.76	AT4G26810	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process; 	--	NP_001119064.1 SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]
AT4G26870	0.715370071143842	0.235775397626704	0.00241241092534713	0.0293968148614255	Up	30.92	27.22	46.64	50.46	AT4G26870	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0004812,aminoacyl-tRNA ligase activity; GO:0004815,aspartate-tRNA ligase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006412,translation; GO:0006418,tRNA aminoacylation for protein translation; GO:0006422,aspartyl-tRNA aminoacylation; GO:0009506,plasmodesma; GO:0016874,ligase activity; GO:0017101,aminoacyl-tRNA synthetase multienzyme complex; GO:0046872,metal ion binding; 	DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]; K22503; 	NP_194417.2 Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Arabidopsis thaliana]
AT4G27010	0.714859592602109	0.299571216595603	0.0170199741599769	0.134052558383818	Up	3.55	3.47	5.59	6.12	AT4G27010	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466,maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005730,nucleolus; 	--	NP_001320074.1 ribosome 60S biogenesis amino-terminal protein [Arabidopsis thaliana]
AT4G27090	0.692942382172385	0.10529871347448	4.68144650114998e-11	4.5727042399028e-09	Up	946.41	1004.59	1634.75	1569.22	AT4G27090	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042273,ribosomal large subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L14e, RPL14; large subunit ribosomal protein L14e; K02875; 	NP_194439.1 Ribosomal protein L14 [Arabidopsis thaliana]
AT4G27130	1.66412296422992	0.254007545492361	5.69732090539608e-11	5.47870277763088e-09	Up	76.73	82.82	283.18	229.59	AT4G27130	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005829,cytosol; GO:0006412,translation; GO:0006413,translational initiation; GO:0006417,regulation of translation; 	EIF1, SUI1; translation initiation factor 1; K03113; 	NP_194443.1 Translation initiation factor SUI1 family protein [Arabidopsis thaliana]
AT4G27435	-1.40383868099287	0.602392286997448	0.0197829428157096	0.148461830386496	Down	24.24	26.64	10.34	9.14	AT4G27435	GO:0016020,membrane; 	--	NP_567774.1 fiber (DUF1218) [Arabidopsis thaliana]
AT4G27440	-0.901843243535142	0.123017839970691	2.28449166838086e-13	3.41435170436923e-11	Down	693.54	677.93	325.98	420.86	AT4G27440	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005829,cytosol; GO:0009507,chloroplast; GO:0009527,plastid outer membrane; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009707,chloroplast outer membrane; GO:0009723,response to ethylene; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016630,protochlorophyllide reductase activity; GO:0019904,protein domain specific binding; 	por; protochlorophyllide reductase [EC:1.3.1.33]; K00218; 	NP_001031731.1 protochlorophyllide oxidoreductase B [Arabidopsis thaliana]
AT4G27850	-4.7026412808326	2.30360137134789	0.0412080907038871	1	Down	1.49	0.59	0.00	0.00	AT4G27850	GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0006880,intracellular sequestering of iron ion; GO:0010168,ER body; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0071421,manganese ion transmembrane transport; 	--	NP_194514.1 Glycine-rich protein family [Arabidopsis thaliana]
AT4G27860	1.39294707620504	0.609721792683941	0.0223385388383821	0.161957670537773	Up	2.37	2.47	5.28	7.67	AT4G27860	GO:0005381,iron ion transmembrane transporter activity; GO:0005384,manganese ion transmembrane transporter activity; GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006880,intracellular sequestering of iron ion; GO:0010168,ER body; GO:0016020,membrane; GO:0030026,cellular manganese ion homeostasis; GO:0034755,iron ion transmembrane transport; GO:0071421,manganese ion transmembrane transport; 	--	NP_001190855.1 vacuolar iron transporter (VIT) family protein [Arabidopsis thaliana]
AT4G27990	-1.20697286536693	0.320683412320546	0.000167382822269606	0.00331161708174555	Down	97.35	65.06	36.47	35.00	AT4G27990	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0090143,nucleoid organization; 	--	NP_194528.1 YGGT family protein [Arabidopsis thaliana]
AT4G28090	-1.55111474106362	0.679556832849127	0.0224575578675058	1	Down	7.13	6.11	2.46	2.11	AT4G28090	GO:0005507,copper ion binding; GO:0016491,oxidoreductase activity; 	--	NP_194538.1 SKU5 similar 10 [Arabidopsis thaliana]
AT4G28200	1.21139882215838	0.151958901311287	1.56272724130397e-15	3.28570024209758e-13	Up	52.95	53.83	121.67	129.68	AT4G28200	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0006396,RNA processing; GO:0030515,snoRNA binding; GO:0032040,small-subunit processome; GO:0034388,Pwp2p-containing subcomplex of 90S preribosome; 	UTP6; U3 small nucleolar RNA-associated protein 6; K14557; 	KAG7617637.1 U3 small nucleolar RNA-associated protein 6 [Arabidopsis thaliana x Arabidopsis arenosa]
AT4G28260	0.768114562715115	0.376127858361696	0.0411353212740092	0.245093016524536	Up	11.93	10.13	21.32	16.78	AT4G28260	GO:0003674,molecular_function; 	--	NP_001078455.1 acyl-UDP-N-acetylglucosamine O-acyltransferase [Arabidopsis thaliana]
AT4G28450	0.873626880639068	0.274688255647413	0.00147056456320391	0.0199240389600024	Up	25.00	25.58	54.63	39.26	AT4G28450	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0016567,protein ubiquitination; GO:0032040,small-subunit processome; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_567810.5 WD repeat and SOF domain-containing protein 1 [Arabidopsis thaliana]
AT4G28510	0.845929264652862	0.232638645778544	0.000276649757837174	0.0050766867543937	Up	49.18	53.16	93.80	93.07	AT4G28510	GO:0000325,plant-type vacuole; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005747,mitochondrial respiratory chain complex I; GO:0007005,mitochondrion organization; GO:0016020,membrane; 	--	NP_194580.1 prohibitin 1 [Arabidopsis thaliana]
AT4G28710	-0.890469466891587	0.33394999314546	0.00766511986132851	0.0729185673924695	Down	10.35	7.70	5.12	4.77	AT4G28710	GO:0000146,microfilament motor activity; GO:0000166,nucleotide binding; GO:0003774,cytoskeletal motor activity; GO:0003779,actin binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0007015,actin filament organization; GO:0015629,actin cytoskeleton; GO:0016459,myosin complex; GO:0030048,actin filament-based movement; GO:0030050,vesicle transport along actin filament; GO:0031982,vesicle; GO:0048767,root hair elongation; GO:0051015,actin filament binding; 	MYO5; myosin V; K10357; 	NP_194600.2 Myosin family protein with Dil domain-containing protein [Arabidopsis thaliana]
AT4G28750	-0.76614515898679	0.239479549001345	0.00137805167144804	0.0189032853250967	Down	197.95	165.71	111.70	105.44	AT4G28750	GO:0003729,mRNA binding; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009522,photosystem I; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009538,photosystem I reaction center; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0019904,protein domain specific binding; 	psaE; photosystem I subunit IV; K02693; 	NP_567818.2 Photosystem I reaction centre subunit IV / PsaE protein [Arabidopsis thaliana]
AT4G28930	-2.33118583858397	0.929277359379155	0.0121210412425715	1	Down	10.21	19.02	1.92	4.11	AT4G28930	GO:0008150,biological_process; 	--	NP_194622.1 hypothetical protein AT4G28930 [Arabidopsis thaliana]
AT4G29010	-0.600559873753365	0.118922457697127	4.41781624755888e-07	1.8267670183656e-05	Down	198.70	212.57	143.80	131.59	AT4G29010	GO:0003824,catalytic activity; GO:0003857,3-hydroxyacyl-CoA dehydrogenase activity; GO:0004165,delta(3)-delta(2)-enoyl-CoA isomerase activity; GO:0004300,enoyl-CoA hydratase activity; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006635,fatty acid beta-oxidation; GO:0008152,metabolic process; GO:0008692,3-hydroxybutyryl-CoA epimerase activity; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009695,jasmonic acid biosynthetic process; GO:0009908,flower development; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016829,lyase activity; GO:0016853,isomerase activity; GO:0032787,monocarboxylic acid metabolic process; GO:0070403,NAD+ binding; 	MFP2; enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [EC:4.2.1.17 1.1.1.35 1.1.1.211]; K10527; 	NP_194630.1 Enoyl-CoA hydratase/isomerase family [Arabidopsis thaliana]
AT4G29020	-1.08802117908395	0.274637257818976	7.44285034699355e-05	0.00171610561165313	Down	141.95	159.79	58.72	86.40	AT4G29020	--	--	NP_194631.1 glycine-rich protein [Arabidopsis thaliana]
AT4G29030	-1.71715401075552	0.229312296068501	6.97835865502783e-14	1.16981809615703e-11	Down	315.08	327.06	93.09	105.96	AT4G29030	--	--	NP_194632.1 Putative membrane lipoprotein [Arabidopsis thaliana]
AT4G29100	0.815821569869569	0.343097165875556	0.017415563381862	0.13608675879988	Up	14.43	17.49	26.65	30.50	AT4G29100	GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009737,response to abscisic acid; GO:0046983,protein dimerization activity; 	--	NP_001328529.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Arabidopsis thaliana]
AT4G29380	0.626900425661007	0.296980814256214	0.0347798587693179	0.219564451925388	Up	6.01	8.96	11.66	11.80	AT4G29380	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005770,late endosome; GO:0005794,Golgi apparatus; GO:0005942,phosphatidylinositol 3-kinase complex; GO:0006468,protein phosphorylation; GO:0006623,protein targeting to vacuole; GO:0006914,autophagy; GO:0009555,pollen development; GO:0009846,pollen germination; GO:0010008,endosome membrane; GO:0015031,protein transport; GO:0016020,membrane; GO:0016236,macroautophagy; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030242,autophagy of peroxisome; GO:0032991,protein-containing complex; GO:0034271,phosphatidylinositol 3-kinase complex, class III, type I; GO:0034272,phosphatidylinositol 3-kinase complex, class III, type II; GO:0045324,late endosome to vacuole transport; GO:0048015,phosphatidylinositol-mediated signaling; GO:0071561,nucleus-vacuole junction; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:0106310,protein serine kinase activity; 	PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4 [EC:2.7.11.1]; K08333; 	NP_194667.1 protein kinase family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT4G29410	1.1245300019101	0.172322648995805	6.76739525621211e-11	6.40836169109246e-09	Up	222.36	225.91	557.73	433.81	AT4G29410	GO:0000976,transcription cis-regulatory region binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L28e, RPL28; large subunit ribosomal protein L28e; K02903; 	NP_001078470.1 Ribosomal L28e protein family [Arabidopsis thaliana]
AT4G29510	0.624783660285532	0.242464510479812	0.00997183100391675	0.0893144863563807	Up	42.54	43.25	77.10	56.95	AT4G29510	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006325,chromatin organization; GO:0008168,methyltransferase activity; GO:0016274,protein-arginine N-methyltransferase activity; GO:0016740,transferase activity; GO:0018216,peptidyl-arginine methylation; GO:0032259,methylation; GO:0035242,protein-arginine omega-N asymmetric methyltransferase activity; 	PRMT1; type I protein arginine methyltransferase [EC:2.1.1.319]; K11434; 	NP_194680.1 arginine methyltransferase 11 [Arabidopsis thaliana]
AT4G29580	2.78400222573554	1.05244144397471	0.00816233622640893	1	Up	0.87	0.38	4.02	4.85	AT4G29580	GO:0003824,catalytic activity; GO:0004126,cytidine deaminase activity; GO:0005829,cytosol; GO:0006807,nitrogen compound metabolic process; GO:0008270,zinc ion binding; GO:0009972,cytidine deamination; GO:0046872,metal ion binding; GO:0071704,organic substance metabolic process; 	--	NP_001154274.1 Cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana]
AT4G30064	-4.10498809017216	1.38221338844625	0.00297929995966374	1	Down	28.67	23.90	2.85	0.00	AT4G30064	GO:0005576,extracellular region; GO:0006952,defense response; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001031753.1 low-molecular-weight cysteine-rich 61 [Arabidopsis thaliana]
AT4G30110	-1.43958784284682	0.577764755014001	0.0127151084484414	0.107666157203355	Down	4.84	6.49	1.42	2.89	AT4G30110	GO:0000041,transition metal ion transport; GO:0000166,nucleotide binding; GO:0005215,transporter activity; GO:0005385,zinc ion transmembrane transporter activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006812,cation transport; GO:0008551,P-type cadmium transporter activity; GO:0015086,cadmium ion transmembrane transporter activity; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016463,P-type zinc transporter activity; GO:0016887,ATP hydrolysis activity; GO:0019829,ATPase-coupled cation transmembrane transporter activity; GO:0034220,ion transmembrane transport; GO:0046872,metal ion binding; GO:0055069,zinc ion homeostasis; GO:0070574,cadmium ion transmembrane transport; GO:0071577,zinc ion transmembrane transport; GO:0098655,cation transmembrane transport; 	zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]; K01534; 	NP_001320088.1 heavy metal atpase 2 [Arabidopsis thaliana]
AT4G30150	0.918938476611121	0.282983838678607	0.00116498198505234	0.016516116028085	Up	5.63	4.31	9.91	9.21	AT4G30150	GO:0003674,molecular_function; GO:0005730,nucleolus; GO:0042254,ribosome biogenesis; 	--	NP_194744.2 Urb2/Npa2 family protein [Arabidopsis thaliana]
AT4G30400	-1.61476609732806	0.660968107142354	0.0145644543232276	0.118785046600683	Down	9.08	8.35	1.90	3.97	AT4G30400	GO:0005886,plasma membrane; GO:0016020,membrane; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031625,ubiquitin protein ligase binding; GO:0046872,metal ion binding; 	--	NP_567846.1 RING/U-box superfamily protein [Arabidopsis thaliana]
AT4G30490	1.17470597323652	0.5188904052195	0.0235814533625252	0.168701227775159	Up	4.70	8.79	21.46	9.29	AT4G30490	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0016887,ATP hydrolysis activity; 	--	NP_567847.1 AFG1-like ATPase family protein [Arabidopsis thaliana]
AT4G30750	1.17423928472679	0.593760101715215	0.0479701781351456	0.269628481996593	Up	7.99	8.78	18.31	20.18	AT4G30750	--	--	NP_567852.1 hypothetical protein AT4G30750 [Arabidopsis thaliana]
AT4G30760	0.714315678323289	0.288948640464704	0.0134314467684158	0.111898654910811	Up	51.66	59.46	104.87	79.83	AT4G30760	GO:0003674,molecular_function; GO:0004519,endonuclease activity; GO:0004540,ribonuclease activity; GO:0005777,peroxisome; GO:0010468,regulation of gene expression; GO:0016787,hydrolase activity; GO:0035194,post-transcriptional gene silencing by RNA; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090501,RNA phosphodiester bond hydrolysis; GO:1903231,mRNA base-pairing post-transcriptional repressor activity; 	--	NP_567853.1 Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]
AT4G30810	-0.684501110990938	0.230118392908476	0.00293408470136183	0.0342376527023171	Down	53.53	62.95	37.73	35.85	AT4G30810	GO:0000325,plant-type vacuole; GO:0004180,carboxypeptidase activity; GO:0004185,serine-type carboxypeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0016787,hydrolase activity; 	--	NP_567854.1 serine carboxypeptidase-like 29 [Arabidopsis thaliana]
AT4G30850	-1.28223433441821	0.463633326307417	0.00568144212376251	0.0571136868276126	Down	22.62	22.47	6.58	12.49	AT4G30850	GO:0009725,response to hormone; GO:0009744,response to sucrose; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0038023,signaling receptor activity; 	--	NP_194814.2 heptahelical transmembrane protein2 [Arabidopsis thaliana]
AT4G30990	0.777444426379031	0.189260543457291	3.9944607168086e-05	0.00100306245327957	Up	9.24	9.12	15.43	16.56	AT4G30990	GO:0003674,molecular_function; GO:0005730,nucleolus; GO:0005794,Golgi apparatus; GO:0008150,biological_process; GO:0030686,90S preribosome; GO:0032040,small-subunit processome; 	--	NP_001328345.1 ARM repeat superfamily protein [Arabidopsis thaliana]
AT4G31050	1.94446094502087	0.639105156289368	0.00234641935760448	0.0287621859002803	Up	6.16	2.77	20.96	13.99	AT4G31050	GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009249,protein lipoylation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016415,octanoyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0033819,lipoyl(octanoyl) transferase activity; GO:0036211,protein modification process; GO:0044238,primary metabolic process; GO:0071704,organic substance metabolic process; 	lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]; K03801; 	NP_567866.1 Biotin/lipoate A/B protein ligase family [Arabidopsis thaliana]
AT4G31130	-1.48620675133008	0.25537526052655	5.89542447728373e-09	3.71293873623276e-07	Down	147.83	189.63	52.22	70.83	AT4G31130	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0016020,membrane; 	--	NP_194842.1 keratin-associated protein (DUF1218) [Arabidopsis thaliana]
AT4G31160	0.640874279862325	0.214252253431682	0.00277870944644442	0.0327972318583664	Up	10.03	10.25	16.24	15.89	AT4G31160	GO:0005515,protein binding; GO:0005634,nucleus; GO:0009793,embryo development ending in seed dormancy; GO:0009908,flower development; GO:0010154,fruit development; GO:0016567,protein ubiquitination; GO:0048366,leaf development; GO:0048367,shoot system development; GO:0048827,phyllome development; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	DCAF1, VPRBP; DDB1- and CUL4-associated factor 1 [EC:2.7.11.1]; K11789; 	NP_194845.4 DDB1-CUL4 associated factor 1 [Arabidopsis thaliana]
AT4G31580	0.719419652443654	0.215357668553671	0.000836034060108328	0.0127330980098997	Up	89.36	109.75	166.77	166.19	AT4G31580	GO:0000398,mRNA splicing, via spliceosome; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005681,spliceosomal complex; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006397,mRNA processing; GO:0008270,zinc ion binding; GO:0008380,RNA splicing; GO:0016607,nuclear speck; GO:0046872,metal ion binding; 	SFRS7; splicing factor, arginine/serine-rich 7; K12896; 	NP_001078474.1 serine/arginine-rich 22 [Arabidopsis thaliana]
AT4G31590	-0.8713534346094	0.300561070589574	0.00374248085124893	0.0417205536256804	Down	21.52	25.52	12.99	13.15	AT4G31590	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0042803,protein homodimerization activity; GO:0048868,pollen tube development; GO:0071555,cell wall organization; GO:0099402,plant organ development; 	--	NP_194887.1 Cellulose-synthase-like C5 [Arabidopsis thaliana]
AT4G31700	0.673565284258481	0.113805265327819	3.24737952320406e-09	2.17749962082953e-07	Up	528.32	452.77	798.58	791.58	AT4G31700	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S6e, RPS6; small subunit ribosomal protein S6e; K02991; 	NP_194898.1 ribosomal protein S6 [Arabidopsis thaliana]
AT4G31840	-1.14063453250031	0.303991529951588	0.000175295252763418	0.00343528848424992	Down	105.74	88.25	45.50	43.87	AT4G31840	GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0099503,secretory vesicle; 	--	NP_194912.1 early nodulin-like protein 15 [Arabidopsis thaliana]
AT4G32020	0.685186849076567	0.34734669926775	0.0485376242459046	0.271955387881864	Up	38.19	40.09	54.39	73.89	AT4G32020	--	--	NP_194930.1 serine/arginine repetitive matrix-like protein [Arabidopsis thaliana]
AT4G32050	0.628925064010359	0.305533207028243	0.039546882808771	0.23895717547141	Up	15.64	20.38	22.90	33.87	AT4G32050	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_194933.2 neurochondrin family protein [Arabidopsis thaliana]
AT4G32430	0.992585247129606	0.434114971499379	0.0222275327004375	0.161341452983573	Up	6.24	4.16	9.72	11.36	AT4G32430	GO:0003723,RNA binding; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0009451,RNA modification; GO:0043231,intracellular membrane-bounded organelle; GO:1905639,positive regulation of mitochondrial mRNA catabolic process; 	--	NP_001328428.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]
AT4G32770	-0.967201657761316	0.261513974819246	0.000216902760276845	0.00415228200807756	Down	46.31	48.27	21.85	27.50	AT4G32770	GO:0005886,plasma membrane; GO:0006631,fatty acid metabolic process; GO:0006979,response to oxidative stress; GO:0009266,response to temperature stimulus; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009644,response to high light intensity; GO:0009706,chloroplast inner membrane; GO:0009915,phloem sucrose loading; GO:0009941,chloroplast envelope; GO:0009976,tocopherol cyclase activity; GO:0010189,vitamin E biosynthetic process; GO:0010287,plastoglobule; GO:0015994,chlorophyll metabolic process; GO:0016122,xanthophyll metabolic process; GO:0016853,isomerase activity; GO:0031347,regulation of defense response; GO:0052604,delta-tocopherol cyclase activity; GO:0052605,gamma-tocopherol cyclase activity; 	VTE1, SXD1; tocopherol cyclase [EC:5.5.1.24]; K09834; 	NP_567906.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) [Arabidopsis thaliana]
AT4G33010	-0.753571129963869	0.0997643649261742	4.23681905186153e-14	7.50824861976318e-12	Down	239.78	239.56	143.91	145.02	AT4G33010	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004375,glycine dehydrogenase (decarboxylating) activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0005960,glycine cleavage complex; GO:0006544,glycine metabolic process; GO:0006546,glycine catabolic process; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016594,glycine binding; GO:0019464,glycine decarboxylation via glycine cleavage system; GO:0030170,pyridoxal phosphate binding; GO:0046686,response to cadmium ion; GO:0048046,apoplast; 	GLDC, gcvP; glycine dehydrogenase [EC:1.4.4.2]; K00281; 	NP_195027.1 glycine decarboxylase P-protein 1 [Arabidopsis thaliana]
AT4G33355	-1.86597440082614	0.279509475994699	2.45736929752199e-11	2.43869329086082e-09	Down	202.75	215.06	53.77	63.17	AT4G33355	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding; 	--	NP_680758.3 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT4G33500	-0.812595821587934	0.410141514177419	0.0475624392547593	0.268187299525131	Down	11.53	13.26	8.84	5.39	AT4G33500	GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0009507,chloroplast; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0046872,metal ion binding; 	--	NP_567923.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]
AT4G33865	0.773516609816737	0.14722473522006	1.48842682374743e-07	6.73866231700251e-06	Up	800.15	805.65	1460.30	1326.81	AT4G33865	GO:0003735,structural constituent of ribosome; GO:0005829,cytosol; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0008270,zinc ion binding; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S29e, RPS29; small subunit ribosomal protein S29e; K02980; 	NP_001319679.1 Ribosomal protein S14p/S29e family protein [Arabidopsis thaliana]
AT4G33970	0.840258943186617	0.345416229823851	0.0149909205835972	0.121069251197606	Up	15.06	8.22	20.73	21.69	AT4G33970	GO:0005199,structural constituent of cell wall; GO:0005576,extracellular region; GO:0009860,pollen tube growth; GO:0071555,cell wall organization; 	--	NP_195123.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT4G34030	-1.56611035610165	0.280782730812396	2.43776779408194e-08	1.31480476024289e-06	Down	39.05	51.09	13.39	17.71	AT4G34030	GO:0000166,nucleotide binding; GO:0004485,methylcrotonoyl-CoA carboxylase activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005886,plasma membrane; GO:0006552,leucine catabolic process; GO:0008270,zinc ion binding; GO:0016874,ligase activity; GO:0050897,cobalt ion binding; GO:1905202,methylcrotonoyl-CoA carboxylase complex; 	E6.4.1.4B; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]; K01969; 	NP_567950.1 3-methylcrotonyl-CoA carboxylase [Arabidopsis thaliana]
AT4G34120	-0.708606403809898	0.234811008051871	0.00254639268862784	0.0305788976790207	Down	110.45	103.43	65.89	67.16	AT4G34120	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0045454,cell redox homeostasis; 	--	NP_567952.1 Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]
AT4G34180	0.609307881632332	0.161076148990753	0.000155116484595397	0.0031237337522823	Up	150.40	156.58	250.01	225.38	AT4G34180	GO:0004061,arylformamidase activity; GO:0005576,extracellular region; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0019441,tryptophan catabolic process to kynurenine; GO:0043069,negative regulation of programmed cell death; GO:0099503,secretory vesicle; 	--	NP_567957.1 Cyclase family protein [Arabidopsis thaliana]
AT4G34190	-0.890715509494872	0.335042286527358	0.00784854638572897	0.0742648496681677	Down	93.50	102.18	42.09	65.91	AT4G34190	GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009611,response to wounding; GO:0009644,response to high light intensity; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0071486,cellular response to high light intensity; GO:0071492,cellular response to UV-A; 	--	NP_567958.1 stress enhanced protein 1 [Arabidopsis thaliana]
AT4G34240	-0.804851546564864	0.322841001779831	0.0126658979715722	0.107322721541908	Down	31.80	25.90	20.69	12.65	AT4G34240	GO:0004028,3-chloroallyl aldehyde dehydrogenase activity; GO:0004029,aldehyde dehydrogenase (NAD+) activity; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0006081,cellular aldehyde metabolic process; GO:0009414,response to water deprivation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0016491,oxidoreductase activity; GO:0016620,oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; GO:0033721,aldehyde dehydrogenase (NADP+) activity; GO:0043878,glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity; 	ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]; K00128; 	NP_567962.1 aldehyde dehydrogenase 3I1 [Arabidopsis thaliana]
AT4G34250	-1.62051470951154	0.503547064504996	0.00128998240659397	0.0178795885517299	Down	13.44	14.25	5.01	4.10	AT4G34250	GO:0006633,fatty acid biosynthetic process; GO:0009416,response to light stimulus; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity; 	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397; 	NP_195151.1 3-ketoacyl-CoA synthase 16 [Arabidopsis thaliana]
AT4G34265	1.21770579233442	0.304153408811502	6.2388237349745e-05	0.00148261701977699	Up	69.93	64.18	172.36	144.16	AT4G34265	GO:0008150,biological_process; 	--	NP_001329243.1 hypothetical protein AT4G34265 [Arabidopsis thaliana]
AT4G34320	1.05782792419586	0.525944786124524	0.0442947467697781	0.256524899009849	Up	5.83	8.01	12.00	17.35	AT4G34320	GO:0005575,cellular_component; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_001328759.1 transmembrane protein, putative (DUF677) [Arabidopsis thaliana]
AT4G34412	1.58179328251345	0.502117436912505	0.00163133221417401	0.0215513057687206	Up	11.74	14.88	31.86	49.32	AT4G34412	GO:0000408,EKC/KEOPS complex; GO:0002949,tRNA threonylcarbamoyladenosine modification; GO:0005634,nucleus; GO:0005829,cytosol; 	--	NP_680763.2 EKC/KEOPS complex subunit tprkb-like protein [Arabidopsis thaliana]
AT4G34460	0.810587094518326	0.290721680836655	0.00530035539930084	0.0541605508470567	Up	23.03	25.31	41.31	44.88	AT4G34460	GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005834,heterotrimeric G-protein complex; GO:0005886,plasma membrane; GO:0006952,defense response; GO:0007165,signal transduction; GO:0007186,G protein-coupled receptor signaling pathway; GO:0009723,response to ethylene; GO:0009738,abscisic acid-activated signaling pathway; GO:0009845,seed germination; GO:0009867,jasmonic acid mediated signaling pathway; GO:0009991,response to extracellular stimulus; GO:0010118,stomatal movement; GO:0010154,fruit development; GO:0016020,membrane; GO:0030159,signaling receptor complex adaptor activity; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0048364,root development; GO:0048527,lateral root development; GO:0050832,defense response to fungus; GO:0072593,reactive oxygen species metabolic process; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; GO:1905392,plant organ morphogenesis; GO:2000280,regulation of root development; 	GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1; K04536; 	NP_195172.1 GTP binding protein beta 1 [Arabidopsis thaliana]
AT4G34590	0.820392529090042	0.407775804185414	0.0442334817391517	0.25640950512812	Up	34.66	24.68	54.13	52.42	AT4G34590	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009744,response to sucrose; GO:0017148,negative regulation of translation; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046982,protein heterodimerization activity; GO:0080149,sucrose induced translational repression; 	--	NP_195185.1 G-box binding factor 6 [Arabidopsis thaliana]
AT4G34600	5.62906692681083	2.22239851384801	0.011312993872967	1	Up	0.00	0.00	2.16	12.51	AT4G34600	GO:0005179,hormone activity; GO:0005515,protein binding; GO:0007165,signal transduction; GO:0009860,pollen tube growth; GO:0010039,response to iron ion; GO:0010447,response to acidic pH; GO:0048226,Casparian strip; GO:0050801,ion homeostasis; GO:0055072,iron ion homeostasis; GO:0071555,cell wall organization; GO:2000067,regulation of root morphogenesis; 	--	NP_001329855.1 transmembrane protein [Arabidopsis thaliana]
AT4G34630	-0.7470332821222	0.316071933353265	0.0181036490194769	0.139574745858676	Down	67.16	72.96	38.81	46.27	AT4G34630	--	--	NP_195189.1 prostatic spermine-binding-like protein [Arabidopsis thaliana]
AT4G34850	-0.849506451000797	0.160002645142219	1.10030439265727e-07	5.11208838610989e-06	Down	164.14	162.50	91.88	92.36	AT4G34850	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0008152,metabolic process; GO:0009058,biosynthetic process; GO:0009813,flavonoid biosynthetic process; GO:0010584,pollen exine formation; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0030639,polyketide biosynthetic process; GO:0080110,sporopollenin biosynthetic process; GO:0090439,tetraketide alpha-pyrone synthase activity; 	--	NP_567971.1 Chalcone and stilbene synthase family protein [Arabidopsis thaliana]
AT4G34910	0.927079785127307	0.31127851067488	0.00289855175231271	0.0338892879240708	Up	12.83	11.50	23.50	23.52	AT4G34910	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0003729,mRNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_195217.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]
AT4G34950	0.696455735362087	0.178369163934557	9.43912107304405e-05	0.00205065318583382	Up	52.80	59.84	99.41	85.80	AT4G34950	GO:0005886,plasma membrane; GO:0016020,membrane; 	--	NP_195221.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT4G34960	-1.52648087329778	0.679538321097354	0.0246816015070787	1	Down	17.60	14.41	4.97	6.39	AT4G34960	GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0006457,protein folding; GO:0016018,cyclosporin A binding; GO:0016853,isomerase activity; GO:0043231,intracellular membrane-bounded organelle; 	--	NP_001328824.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]
AT4G35010	-0.789298420063961	0.269066242117346	0.00335193354264569	0.0379732745173696	Down	24.37	25.57	16.75	12.48	AT4G35010	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0048046,apoplast; 	--	NP_567973.1 beta-galactosidase 11 [Arabidopsis thaliana]
AT4G35040	0.905389501327385	0.391226048421126	0.0206547668057153	0.152877316363305	Up	18.18	18.02	35.20	33.67	AT4G35040	GO:0000976,transcription cis-regulatory region binding; GO:0000978,RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0010043,response to zinc ion; 	--	NP_001320139.1 Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]
AT4G35160	-0.819148507604741	0.407943828770254	0.0446439951398315	0.257599486668545	Down	22.02	24.20	10.57	16.23	AT4G35160	GO:0005737,cytoplasm; GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0016740,transferase activity; GO:0017096,acetylserotonin O-methyltransferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0030187,melatonin biosynthetic process; GO:0032259,methylation; GO:0046983,protein dimerization activity; 	ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4]; K22588; 	NP_195242.1 O-methyltransferase family protein [Arabidopsis thaliana]
AT4G35250	-0.655824727490995	0.255505543768685	0.0102649790887478	0.0913821785249148	Down	64.09	51.80	40.62	33.96	AT4G35250	GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006413,translational initiation; GO:0009507,chloroplast; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0010207,photosystem II assembly; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0042651,thylakoid membrane; 	--	NP_195251.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT4G35320	0.789542913784547	0.328501105398333	0.0162402505410751	0.129224058987836	Up	54.88	48.72	103.36	78.16	AT4G35320	--	--	NP_567982.1 hypothetical protein AT4G35320 [Arabidopsis thaliana]
AT4G35335	-0.762522024010967	0.381606986726993	0.0456964176526629	0.261589322095654	Down	27.02	34.32	14.03	22.96	AT4G35335	--	EEF2; elongation factor 2; K03234; 	CAA7016615.1 unnamed protein product [Microthlaspi erraticum]
AT4G35350	-0.605333701462664	0.292403408832487	0.0384335666171605	0.233743741095283	Down	45.65	40.42	28.67	28.84	AT4G35350	GO:0000325,plant-type vacuole; GO:0004197,cysteine-type endopeptidase activity; GO:0005615,extracellular space; GO:0005634,nucleus; GO:0005764,lysosome; GO:0005773,vacuole; GO:0005886,plasma membrane; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0010623,programmed cell death involved in cell development; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0051603,proteolysis involved in protein catabolic process; 	--	NP_567983.1 xylem cysteine peptidase 1 [Arabidopsis thaliana]
AT4G35420	-1.40707765120916	0.318452332838299	9.9394028736816e-06	0.000300727543043952	Down	47.53	58.01	21.33	19.02	AT4G35420	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0009555,pollen development; GO:0010584,pollen exine formation; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0048316,seed development; GO:0080110,sporopollenin biosynthetic process; 	--	NP_195268.2 dihydroflavonol 4-reductase-like1 [Arabidopsis thaliana]
AT4G35570	0.920675717020779	0.252338663922325	0.000263702273524952	0.00489704596269016	Up	193.38	109.68	296.38	286.91	AT4G35570	GO:0000785,chromatin; GO:0003677,DNA binding; GO:0003682,chromatin binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006325,chromatin organization; GO:0006355,regulation of DNA-templated transcription; GO:0030527,structural constituent of chromatin; 	--	NP_001329802.1 high mobility group B5 [Arabidopsis thaliana]
AT4G35580	0.720711019208619	0.294599645668693	0.0144287495134931	0.118086949163632	Up	17.08	21.82	29.01	36.22	AT4G35580	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005516,calmodulin binding; GO:0005634,nucleus; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0006355,regulation of DNA-templated transcription; GO:0016020,membrane; GO:0031347,regulation of defense response; GO:0045892,negative regulation of DNA-templated transcription; GO:0071470,cellular response to osmotic stress; GO:1900426,positive regulation of defense response to bacterium; 	--	NP_567986.3 NAC transcription factor-like 9 [Arabidopsis thaliana]
AT4G35950	-0.871721446285358	0.395095582820352	0.0273590944804523	0.187301085557401	Down	54.04	40.32	26.13	26.29	AT4G35950	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0005938,cell cortex; GO:0007015,actin filament organization; GO:0007163,establishment or maintenance of cell polarity; GO:0007264,small GTPase mediated signal transduction; GO:0008360,regulation of cell shape; GO:0016020,membrane; GO:0019901,protein kinase binding; GO:0030865,cortical cytoskeleton organization; GO:0031410,cytoplasmic vesicle; GO:0032956,regulation of actin cytoskeleton organization; GO:0042995,cell projection; GO:0110165,cellular anatomical entity; 	RAC1; Ras-related C3 botulinum toxin substrate 1; K04392; 	NP_195320.1 RAC-like 6 [Arabidopsis thaliana]
AT4G36130	0.71772321445951	0.109871055086911	6.47179761368458e-11	6.17558841521209e-09	Up	406.77	407.97	670.55	691.20	AT4G36130	GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005773,vacuole; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L8e, RPL8; large subunit ribosomal protein L8e; K02938; 	NP_195336.1 Ribosomal protein L2 family [Arabidopsis thaliana]
AT4G36410	1.58233291040661	0.739020054541769	0.032264112271608	1	Up	4.82	7.42	20.14	16.96	AT4G36410	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0009739,response to gibberellin; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061631,ubiquitin conjugating enzyme activity; 	UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W [EC:2.3.2.25]; K10688; 	NP_568004.1 ubiquitin-conjugating enzyme 17 [Arabidopsis thaliana]
AT4G36580	0.81507253888988	0.391269892577064	0.0372378645869221	0.229003528264085	Up	9.13	10.03	12.26	22.16	AT4G36580	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0008270,zinc ion binding; GO:0016887,ATP hydrolysis activity; 	--	NP_195376.2 AAA-type ATPase family protein [Arabidopsis thaliana]
AT4G36810	-0.897136480664606	0.238476936760466	0.000168598935127366	0.00333036590804932	Down	69.49	70.84	38.10	38.48	AT4G36810	GO:0004161,dimethylallyltranstransferase activity; GO:0004311,farnesyltranstransferase activity; GO:0004337,geranyltranstransferase activity; GO:0004659,prenyltransferase activity; GO:0005515,protein binding; GO:0005829,cytosol; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009513,etioplast; GO:0009536,plastid; GO:0009793,embryo development ending in seed dormancy; GO:0016117,carotenoid biosynthetic process; GO:0016740,transferase activity; GO:0033384,geranyl diphosphate biosynthetic process; GO:0033386,geranylgeranyl diphosphate biosynthetic process; GO:0043693,monoterpene biosynthetic process; GO:0045337,farnesyl diphosphate biosynthetic process; GO:0046872,metal ion binding; 	GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]; K13789; 	NP_195399.1 geranylgeranyl pyrophosphate synthase 1 [Arabidopsis thaliana]
AT4G36910	0.741455386859258	0.370090937379244	0.045129965967379	0.259303949895941	Up	29.99	27.53	36.54	61.62	AT4G36910	GO:0009507,chloroplast; GO:0009536,plastid; GO:0045454,cell redox homeostasis; 	--	NP_195409.1 Cystathionine beta-synthase (CBS) family protein [Arabidopsis thaliana]
AT4G37000	-0.848416905241116	0.380219753114083	0.0256555938252988	0.178696036722533	Down	27.82	41.04	16.87	22.14	AT4G37000	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010363,regulation of plant-type hypersensitive response; GO:0015996,chlorophyll catabolic process; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0043067,regulation of programmed cell death; GO:0051743,red chlorophyll catabolite reductase activity; GO:0098542,defense response to other organism; 	RCCR, ACD2; red chlorophyll catabolite reductase [EC:1.3.7.12]; K13545; 	NP_195417.1 accelerated cell death 2 (ACD2) [Arabidopsis thaliana]
AT4G37300	0.883625046923096	0.243519502196363	0.000285006869606296	0.00521461683992051	Up	140.48	84.85	219.79	202.78	AT4G37300	GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009793,embryo development ending in seed dormancy; 	--	NP_195447.1 maternal effect embryo arrest 59 [Arabidopsis thaliana]
AT4G37310	0.892560098468566	0.404056035084437	0.0271745863411727	0.186552708114138	Up	13.24	9.26	27.52	14.77	AT4G37310	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0016709,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_568024.2 cytochrome P450, family 81, subfamily H, polypeptide 1 [Arabidopsis thaliana]
AT4G37740	1.1187786959493	0.535566154209617	0.0367109168229083	0.227927388983072	Up	4.37	4.32	8.18	11.06	AT4G37740	GO:0000976,transcription cis-regulatory region binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0008285,negative regulation of cell population proliferation; GO:0032502,developmental process; GO:0048364,root development; GO:0099402,plant organ development; 	--	NP_195488.2 growth-regulating factor 2 [Arabidopsis thaliana]
AT4G37900	-1.00969393283029	0.107326046340697	5.06991068058497e-21	2.09640806642188e-18	Down	263.92	270.25	134.89	134.69	AT4G37900	GO:0009734,auxin-activated signaling pathway; GO:0010928,regulation of auxin mediated signaling pathway; GO:0071470,cellular response to osmotic stress; GO:2000028,regulation of photoperiodism, flowering; 	--	NP_001329025.1 hypothetical protein (duplicated DUF1399) [Arabidopsis thaliana]
AT4G37910	0.640679135922123	0.0993544782574439	1.13024211835133e-10	1.01598938247451e-08	Up	227.09	222.57	353.75	358.65	AT4G37910	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006457,protein folding; GO:0006950,response to stress; GO:0008270,zinc ion binding; GO:0009505,plant-type cell wall; GO:0016887,ATP hydrolysis activity; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone; 	dnaK, HSPA9; molecular chaperone DnaK; K04043; 	NP_001328002.1 mitochondrial heat shock protein 70-1 [Arabidopsis thaliana]
AT4G37930	-0.986945908052805	0.106066049619042	1.33976687822575e-20	5.3612284272227e-18	Down	420.79	428.51	214.76	220.81	AT4G37930	GO:0003729,mRNA binding; GO:0003824,catalytic activity; GO:0004372,glycine hydroxymethyltransferase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006544,glycine metabolic process; GO:0006563,L-serine metabolic process; GO:0006565,L-serine catabolic process; GO:0006730,one-carbon metabolic process; GO:0007623,circadian rhythm; GO:0008266,poly(U) RNA binding; GO:0008270,zinc ion binding; GO:0009409,response to cold; GO:0009416,response to light stimulus; GO:0009534,chloroplast thylakoid; GO:0009570,chloroplast stroma; GO:0009626,plant-type hypersensitive response; GO:0009853,photorespiration; GO:0010319,stromule; GO:0016740,transferase activity; GO:0019264,glycine biosynthetic process from serine; GO:0022626,cytosolic ribosome; GO:0030170,pyridoxal phosphate binding; GO:0035999,tetrahydrofolate interconversion; GO:0046653,tetrahydrofolate metabolic process; GO:0046655,folic acid metabolic process; GO:0048046,apoplast; GO:0070905,serine binding; 	glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1]; K00600; 	NP_195506.1 serine transhydroxymethyltransferase 1 [Arabidopsis thaliana]
AT4G38100	1.02328358499234	0.429772584568887	0.0172662505840195	0.135647776120812	Up	21.72	18.33	33.52	49.56	AT4G38100	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016020,membrane; 	--	NP_568035.1 CURVATURE THYLAKOID 1D-like protein [Arabidopsis thaliana]
AT4G38190	-1.46543954352214	0.540313491322947	0.00668377695239955	0.0655432830786691	Down	5.55	4.63	1.92	1.82	AT4G38190	GO:0000139,Golgi membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0009833,plant-type primary cell wall biogenesis; GO:0009846,pollen germination; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016760,cellulose synthase (UDP-forming) activity; GO:0030244,cellulose biosynthetic process; GO:0051753,mannan synthase activity; GO:0071555,cell wall organization; GO:0097502,mannosylation; 	--	NP_195532.1 cellulose synthase like D4 [Arabidopsis thaliana]
AT4G38710	-0.96618723745649	0.182857391323927	1.26511157508735e-07	5.81248484776244e-06	Down	125.86	104.99	61.07	58.96	AT4G38710	GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005886,plasma membrane; GO:0006412,translation; GO:0006413,translational initiation; GO:0042803,protein homodimerization activity; 	--	NP_195583.1 glycine-rich protein [Arabidopsis thaliana]
AT4G38890	0.631844398699941	0.2406881733406	0.00866088570717322	0.0797611634725195	Up	21.22	25.92	34.79	39.49	AT4G38890	GO:0002943,tRNA dihydrouridine synthesis; GO:0005773,vacuole; GO:0006397,mRNA processing; GO:0008033,tRNA processing; GO:0016491,oxidoreductase activity; GO:0017150,tRNA dihydrouridine synthase activity; GO:0046872,metal ion binding; GO:0050660,flavin adenine dinucleotide binding; 	--	NP_195600.2 FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]
AT4G38970	-1.1819699717949	0.100190714243437	4.03511875684162e-32	4.55051347078366e-29	Down	1194.08	1380.15	585.83	567.10	AT4G38970	GO:0003729,mRNA binding; GO:0004332,fructose-bisphosphate aldolase activity; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006094,gluconeogenesis; GO:0006096,glycolytic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009737,response to abscisic acid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; GO:0016829,lyase activity; GO:0030388,fructose 1,6-bisphosphate metabolic process; GO:0048046,apoplast; 	ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]; K01623; 	NP_568049.1 fructose-bisphosphate aldolase 2 [Arabidopsis thaliana]
AT4G39300	1.37343078888872	0.660434385234944	0.0375634266400298	1	Up	9.04	19.04	34.72	39.06	AT4G39300	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_849526.1 envelope glycoprotein [Arabidopsis thaliana]
AT4G39710	-0.894828653887125	0.406308429926284	0.0276414142475151	0.188505631523049	Down	44.42	40.16	18.06	28.52	AT4G39710	GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0016853,isomerase activity; 	E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]; K01802; 	NP_001320168.1 FK506-binding protein 16-2 [Arabidopsis thaliana]
AT4G39940	0.869145499838091	0.442203325969605	0.0493577389962612	0.274477270726151	Up	17.00	11.09	29.46	22.63	AT4G39940	GO:0000103,sulfate assimilation; GO:0000166,nucleotide binding; GO:0004020,adenylylsulfate kinase activity; GO:0005524,ATP binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0019344,cysteine biosynthetic process; GO:0070814,hydrogen sulfide biosynthetic process; 	cysC; adenylylsulfate kinase [EC:2.7.1.25]; K00860; 	NP_195704.1 APS-kinase 2 [Arabidopsis thaliana]
AT4G40060	0.625237953438927	0.29206290867744	0.0322930211905567	0.209187951889742	Up	33.89	32.59	52.24	51.96	AT4G40060	GO:0000976,transcription cis-regulatory region binding; GO:0000981,DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0009637,response to blue light; GO:0030308,negative regulation of cell growth; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0048573,photoperiodism, flowering; 	--	NP_195716.1 homeobox protein 16 [Arabidopsis thaliana]
AT5G01230	1.33515187300987	0.428970382181452	0.00185537034250087	0.0238013124081937	Up	9.42	11.72	27.50	26.63	AT5G01230	GO:0001510,RNA methylation; GO:0002128,tRNA nucleoside ribose methylation; GO:0002181,cytoplasmic translation; GO:0005737,cytoplasm; GO:0008033,tRNA processing; GO:0008168,methyltransferase activity; GO:0008173,RNA methyltransferase activity; GO:0008175,tRNA methyltransferase activity; GO:0016740,transferase activity; GO:0030488,tRNA methylation; GO:0032259,methylation; GO:0051301,cell division; 	--	NP_851026.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT5G01410	-0.941911502703107	0.13798275727164	8.71334747879893e-12	9.48149784864041e-10	Down	364.53	323.96	187.59	176.32	AT5G01410	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006520,cellular amino acid metabolic process; GO:0006979,response to oxidative stress; GO:0006982,response to lipid hydroperoxide; GO:0008615,pyridoxine biosynthetic process; GO:0009651,response to salt stress; GO:0010224,response to UV-B; GO:0010335,response to non-ionic osmotic stress; GO:0012505,endomembrane system; GO:0015994,chlorophyll metabolic process; GO:0016020,membrane; GO:0016829,lyase activity; GO:0016843,amine-lyase activity; GO:0036381,pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity; GO:0042538,hyperosmotic salinity response; GO:0042803,protein homodimerization activity; GO:0042819,vitamin B6 biosynthetic process; GO:0042823,pyridoxal phosphate biosynthetic process; GO:0046982,protein heterodimerization activity; 	pdxS, pdx1; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]; K06215; 	NP_001331465.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]
AT5G01710	1.02857445500343	0.519304147801099	0.0476273621530845	0.268309458450959	Up	5.17	5.18	12.91	8.44	AT5G01710	GO:0000138,Golgi trans cisterna; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0071704,organic substance metabolic process; 	--	NP_195791.1 methyltransferase [Arabidopsis thaliana]
AT5G02160	-1.10497862034274	0.204402448669687	6.44847837192214e-08	3.13699506681153e-06	Down	306.38	319.57	138.44	157.95	AT5G02160	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009535,chloroplast thylakoid membrane; GO:0016020,membrane; GO:0032055,negative regulation of translation in response to stress; 	--	NP_195836.5 transmembrane protein [Arabidopsis thaliana]
AT5G02450	1.11105144735547	0.176488341856778	3.06756722774823e-10	2.48713538955666e-08	Up	295.19	233.09	588.21	571.78	AT5G02450	GO:0000325,plant-type vacuole; GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L36e, RPL36; large subunit ribosomal protein L36e; K02920; 	NP_195865.1 Ribosomal protein L36e family protein [Arabidopsis thaliana]
AT5G02620	-0.90797182055557	0.454259042234319	0.0456302725569055	0.261451977398805	Down	15.96	14.10	11.08	5.01	AT5G02620	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005886,plasma membrane; GO:0008157,protein phosphatase 1 binding; GO:0016020,membrane; GO:0019888,protein phosphatase regulator activity; GO:0035304,regulation of protein dephosphorylation; GO:0050790,regulation of catalytic activity; 	--	KAG7600925.1 Ankyrin repeat [Arabidopsis thaliana x Arabidopsis arenosa]
AT5G02870	0.689665469062892	0.0944054529760908	2.76533012044616e-13	4.03575531107467e-11	Up	473.17	495.66	802.27	785.40	AT5G02870	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005773,vacuole; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L4e, RPL4; large subunit ribosomal protein L4e; K02930; 	NP_195907.1 Ribosomal protein L4/L1 family [Arabidopsis thaliana]
AT5G03350	-2.11999280817739	0.516784459044104	4.09104739158346e-05	0.00102317425186679	Down	38.05	36.83	13.91	3.16	AT5G03350	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009617,response to bacterium; GO:0009627,systemic acquired resistance; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0030246,carbohydrate binding; GO:0048046,apoplast; GO:0050896,response to stimulus; GO:0071446,cellular response to salicylic acid stimulus; 	--	NP_195955.1 Legume lectin family protein [Arabidopsis thaliana]
AT5G03730	-0.722105315976006	0.29063581437654	0.0129707639925332	0.109093437286517	Down	35.63	20.88	18.75	16.01	AT5G03730	GO:0000166,nucleotide binding; GO:0001666,response to hypoxia; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004712,protein serine/threonine/tyrosine kinase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005789,endoplasmic reticulum membrane; GO:0006468,protein phosphorylation; GO:0009686,gibberellin biosynthetic process; GO:0009723,response to ethylene; GO:0009744,response to sucrose; GO:0009750,response to fructose; GO:0009873,ethylene-activated signaling pathway; GO:0010105,negative regulation of ethylene-activated signaling pathway; GO:0010182,sugar mediated signaling pathway; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0046777,protein autophosphorylation; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0106310,protein serine kinase activity; GO:2000035,regulation of stem cell division; GO:2000069,regulation of post-embryonic root development; 	CTR1; serine/threonine-protein kinase CTR1 [EC:2.7.11.1]; K14510; 	NP_195993.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT5G04180	-0.655352400210471	0.297709981556307	0.027713980697077	0.188689314241076	Down	55.62	53.72	37.63	32.77	AT5G04180	GO:0004089,carbonate dehydratase activity; GO:0006730,one-carbon metabolic process; GO:0008270,zinc ion binding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010037,response to carbon dioxide; GO:0016829,lyase activity; GO:0016836,hydro-lyase activity; GO:0046872,metal ion binding; 	cah; carbonic anhydrase [EC:4.2.1.1]; K01674; 	NP_196038.1 alpha carbonic anhydrase 3 [Arabidopsis thaliana]
AT5G04320	0.998509304017998	0.470958345533404	0.0339921502122235	0.216464385720037	Up	6.13	8.93	11.94	18.73	AT5G04320	GO:0000775,chromosome, centromeric region; GO:0005634,nucleus; GO:0007059,chromosome segregation; GO:0016043,cellular component organization; GO:0034090,maintenance of meiotic sister chromatid cohesion; GO:0045132,meiotic chromosome segregation; GO:0045144,meiotic sister chromatid segregation; 	--	NP_001331957.1 Shugoshin C terminus [Arabidopsis thaliana]
AT5G04430	0.741502106358147	0.117403937084901	2.6873310138422e-10	2.19318034386267e-08	Up	252.01	259.81	444.89	424.32	AT5G04430	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003727,single-stranded RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0008380,RNA splicing; GO:0010468,regulation of gene expression; GO:0046719,regulation by virus of viral protein levels in host cell; 	--	NP_196063.1 binding to TOMV RNA 1L (long form) [Arabidopsis thaliana]
AT5G04885	-0.628605736216424	0.146380730659842	1.75229381687913e-05	0.000500857253419022	Down	114.23	117.76	72.63	80.03	AT5G04885	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009251,glucan catabolic process; GO:0009969,xyloglucan biosynthetic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; 	bglX; beta-glucosidase [EC:3.2.1.21]; K05349; 	NP_001330122.1 Glycosyl hydrolase family protein [Arabidopsis thaliana]
AT5G05020	5.14423615162516	2.41957510668171	0.0334957074790372	1	Up	0.00	0.00	5.08	1.87	AT5G05020	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_196121.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]
AT5G05060	-1.27805339415851	0.515525061679984	0.0131703474857187	0.110316111114342	Down	37.47	38.20	10.40	21.73	AT5G05060	GO:0003674,molecular_function; 	--	NP_196125.1 Cystatin/monellin superfamily protein [Arabidopsis thaliana]
AT5G05110	2.26704905239805	0.134545782662484	1.05541316712025e-63	1.30924003381267e-59	Up	145.47	132.62	716.41	643.58	AT5G05110	GO:0004869,cysteine-type endopeptidase inhibitor activity; GO:0005576,extracellular region; GO:0006952,defense response; GO:0010466,negative regulation of peptidase activity; GO:0010951,negative regulation of endopeptidase activity; GO:0030414,peptidase inhibitor activity; 	--	NP_196130.1 Cystatin/monellin family protein [Arabidopsis thaliana]
AT5G05210	0.653583833233366	0.26474090307597	0.0135579138917825	0.112725148677991	Up	29.46	37.71	54.93	52.31	AT5G05210	GO:0003677,DNA binding; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0042273,ribosomal large subunit biogenesis; GO:0042274,ribosomal small subunit biogenesis; 	--	NP_196140.1 Surfeit locus protein 6 [Arabidopsis thaliana]
AT5G05560	0.8474096811516	0.353987733683954	0.0166704927086003	0.131965900073736	Up	3.00	3.86	6.42	6.11	AT5G05560	GO:0005680,anaphase-promoting complex; GO:0016020,membrane; 	APC1; anaphase-promoting complex subunit 1; K03348; 	NP_001331419.1 E3 ubiquitin ligase [Arabidopsis thaliana]
AT5G05970	1.16658368358405	0.269613166655448	1.51236643384912e-05	0.000437317147130498	Up	11.37	15.90	30.02	32.13	AT5G05970	GO:0000775,chromosome, centromeric region; GO:0000776,kinetochore; GO:0000919,cell plate assembly; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005694,chromosome; GO:0005737,cytoplasm; GO:0005828,kinetochore microtubule; GO:0005856,cytoskeleton; GO:0009524,phragmoplast; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0010968,regulation of microtubule nucleation; GO:0032467,positive regulation of cytokinesis; GO:0060236,regulation of mitotic spindle organization; GO:0140496,gamma-tubulin complex binding; GO:2000694,regulation of phragmoplast microtubule organization; 	--	NP_001119176.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT5G06150	-1.00521384631978	0.49425561979138	0.0419724243731107	0.246996169045749	Down	14.83	14.59	9.93	4.79	AT5G06150	GO:0000079,regulation of cyclin-dependent protein serine/threonine kinase activity; GO:0000307,cyclin-dependent protein kinase holoenzyme complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0007049,cell cycle; GO:0010332,response to gamma radiation; GO:0016538,cyclin-dependent protein serine/threonine kinase regulator activity; GO:0044772,mitotic cell cycle phase transition; GO:0051301,cell division; 	--	NP_196233.1 Cyclin family protein [Arabidopsis thaliana]
AT5G06290	-0.866187547413018	0.206572364357652	2.75115400424871e-05	0.000743530837095975	Down	136.74	135.23	67.88	84.23	AT5G06290	GO:0004601,peroxidase activity; GO:0005886,plasma membrane; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0010319,stromule; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0045454,cell redox homeostasis; GO:0048046,apoplast; GO:0051920,peroxiredoxin activity; GO:0098869,cellular oxidant detoxification; GO:0140824,thioredoxin-dependent peroxiredoxin activity; 	PRDX2_4, ahpC; peroxiredoxin 2/4 [EC:1.11.1.24]; K03386; 	NP_568166.1 2-cysteine peroxiredoxin B [Arabidopsis thaliana]
AT5G06350	1.29739906758873	0.509141747380836	0.0108277894211481	0.0952615090562713	Up	2.31	3.52	6.02	8.56	AT5G06350	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0008150,biological_process; GO:0009506,plasmodesma; 	--	NP_001318491.1 ARM repeat superfamily protein [Arabidopsis thaliana]
AT5G06430	1.39751569298315	0.292895586891822	1.82969379634672e-06	6.71519276440268e-05	Up	34.84	39.18	104.41	93.44	AT5G06430	GO:0003674,molecular_function; GO:0009507,chloroplast; GO:0009536,plastid; GO:0045454,cell redox homeostasis; 	--	NP_196261.1 Thioredoxin superfamily protein [Arabidopsis thaliana]
AT5G06460	0.799524632997521	0.174195168265483	4.43626381883905e-06	0.000148734736953239	Up	29.27	32.88	50.61	59.42	AT5G06460	GO:0000166,nucleotide binding; GO:0004839,ubiquitin activating enzyme activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0006974,cellular response to DNA damage stimulus; GO:0008641,ubiquitin-like modifier activating enzyme activity; GO:0016567,protein ubiquitination; GO:0016874,ligase activity; GO:0032446,protein modification by small protein conjugation; GO:0036211,protein modification process; 	UBE1, UBA1; ubiquitin-activating enzyme E1 [EC:6.2.1.45]; K03178; 	NP_568168.1 ubiquitin activating enzyme 2 [Arabidopsis thaliana]
AT5G06580	0.848601721519257	0.412992169546591	0.0399017395966727	0.240282077522682	Up	6.87	9.97	17.23	13.49	AT5G06580	GO:0003824,catalytic activity; GO:0004458,D-lactate dehydrogenase (cytochrome) activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005886,plasma membrane; GO:0008720,D-lactate dehydrogenase activity; GO:0016491,oxidoreductase activity; GO:0019154,glycolate dehydrogenase activity; GO:0042802,identical protein binding; GO:0050660,flavin adenine dinucleotide binding; GO:0051596,methylglyoxal catabolic process; GO:0071949,FAD binding; GO:1903457,lactate catabolic process; 	LDHD, dld; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]; K00102; 	NP_568170.1 FAD-linked oxidases family protein [Arabidopsis thaliana]
AT5G06720	1.20146309426156	0.579986783846209	0.0383087994703968	0.233294382636364	Up	6.04	5.36	15.40	11.19	AT5G06720	GO:0002215,defense response to nematode; GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005794,Golgi apparatus; GO:0006979,response to oxidative stress; GO:0009908,flower development; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity; 	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430; 	NP_196290.1 peroxidase 2 [Arabidopsis thaliana]
AT5G06850	-1.37274420389467	0.34044259728084	5.52491421084538e-05	0.00135180593265359	Down	16.50	22.67	8.06	7.28	AT5G06850	GO:0005515,protein binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0009506,plasmodesma; GO:0009511,plasmodesmatal endoplasmic reticulum; GO:0009908,flower development; GO:0009911,positive regulation of flower development; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016020,membrane; GO:0048574,long-day photoperiodism, flowering; GO:0048578,positive regulation of long-day photoperiodism, flowering; GO:0070161,anchoring junction; 	--	NP_568175.2 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]
AT5G06860	-0.684140197180825	0.339883771935441	0.0441288184711989	0.255965108325206	Down	33.50	37.86	24.47	20.53	AT5G06860	GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005794,Golgi apparatus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0043086,negative regulation of catalytic activity; GO:0090353,polygalacturonase inhibitor activity; GO:0099503,secretory vesicle; 	--	NP_196304.1 polygalacturonase inhibiting protein 1 [Arabidopsis thaliana]
AT5G06930	-2.11860578148542	1.00891977273348	0.0357398058752304	1	Down	2.48	2.85	0.47	0.80	AT5G06930	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005643,nuclear pore; 	--	NP_001318495.1 nucleolar-like protein [Arabidopsis thaliana]
AT5G07110	-0.854513451602803	0.361532803086855	0.0180990821728354	0.139574745858676	Down	59.74	49.05	24.88	36.65	AT5G07110	GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0016020,membrane; GO:0016192,vesicle-mediated transport; 	--	NP_196328.1 prenylated RAB acceptor 1.B6 [Arabidopsis thaliana]
AT5G07290	0.888441392738198	0.284980718853252	0.00182361547650193	0.0235155405259943	Up	13.07	9.55	22.17	20.38	AT5G07290	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0045836,positive regulation of meiotic nuclear division; GO:0045927,positive regulation of growth; GO:0051321,meiotic cell cycle; 	--	NP_196346.1 MEI2-like 4 [Arabidopsis thaliana]
AT5G07510	-1.55557055170498	0.15556239958112	1.52926671943901e-23	7.58822146185638e-21	Down	491.12	439.79	162.93	158.77	AT5G07510	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0008289,lipid binding; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0048608,reproductive structure development; 	--	NP_196368.2 glycine-rich protein 14 [Arabidopsis thaliana]
AT5G07520	-1.60370760372523	0.208339133290379	1.38664889429065e-14	2.60626962631447e-12	Down	189.61	205.03	69.75	61.88	AT5G07520	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0008289,lipid binding; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0048608,reproductive structure development; 	--	AAK83836.1 glycine-rich protein GRP18 [Arabidopsis thaliana]
AT5G07530	-1.6969231057487	0.111561857671598	3.00760879786927e-52	1.24364623791894e-48	Down	719.73	810.66	221.22	259.10	AT5G07530	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0008289,lipid binding; GO:0009791,post-embryonic development; GO:0009859,pollen hydration; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0031012,extracellular matrix; GO:0048544,recognition of pollen; GO:0048608,reproductive structure development; GO:0048655,anther wall tapetum morphogenesis; GO:0070505,pollen coat; 	--	ABH05945.1 hypothetical protein, partial [Phaseolus vulgaris]
AT5G07540	-1.85063376809536	0.214800692737504	6.95849740961506e-18	2.30872455141348e-15	Down	180.74	176.58	50.50	50.17	AT5G07540	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0008289,lipid binding; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0048608,reproductive structure development; GO:0070505,pollen coat; 	--	NP_850788.2 glycine-rich protein 16 [Arabidopsis thaliana]
AT5G07550	-1.59767367486137	0.159325698716626	1.15143391834507e-23	5.95147406544607e-21	Down	980.22	816.64	294.35	309.48	AT5G07550	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0008289,lipid binding; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0048608,reproductive structure development; GO:0048655,anther wall tapetum morphogenesis; GO:0070505,pollen coat; 	--	NP_196372.1 glycine-rich protein 19 [Arabidopsis thaliana]
AT5G07560	-1.70481255558535	0.200873935157354	2.1208092285132e-17	6.2639615427872e-15	Down	328.11	409.67	115.40	114.56	AT5G07560	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0008289,lipid binding; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0048608,reproductive structure development; 	--	NP_196373.1 glycine-rich protein 20 [Arabidopsis thaliana]
AT5G07600	-1.77889582784119	0.497303773147614	0.000347452666932665	0.00613981528960072	Down	26.71	41.99	9.74	10.64	AT5G07600	GO:0005576,extracellular region; GO:0005811,lipid droplet; GO:0009791,post-embryonic development; GO:0012511,monolayer-surrounded lipid storage body; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0019915,lipid storage; GO:0019953,sexual reproduction; GO:0048608,reproductive structure development; 	--	NP_196377.1 Oleosin family protein [Arabidopsis thaliana]
AT5G07940	0.986626551040248	0.468044158677656	0.0350329365284115	0.22030267077143	Up	1.94	3.26	6.63	3.79	AT5G07940	--	--	NP_001331336.1 dentin sialophosphoprotein-like protein [Arabidopsis thaliana]
AT5G08050	-0.659930008234904	0.230747019883101	0.00423678458455048	0.0458738970211263	Down	172.89	164.65	101.16	116.41	AT5G08050	GO:0005886,plasma membrane; GO:0009507,chloroplast; GO:0009515,granal stacked thylakoid; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009579,thylakoid; GO:0009658,chloroplast organization; GO:0010027,thylakoid membrane organization; GO:0010196,nonphotochemical quenching; GO:0016020,membrane; GO:0045893,positive regulation of DNA-templated transcription; GO:0090391,granum assembly; 	--	NP_196422.1 wiskott-aldrich syndrome family protein, putative (DUF1118) [Arabidopsis thaliana]
AT5G08090	-3.11715256414263	1.2946356548504	0.0160513867825857	1	Down	5.08	5.58	0.00	1.34	AT5G08090	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_196426.1 transmembrane protein [Arabidopsis thaliana]
AT5G08400	1.38565854549795	0.429576885243892	0.00125693225490046	0.0175377839868612	Up	8.18	12.08	27.28	26.41	AT5G08400	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_001031856.1 structural maintenance of chromosomes-like protein, putative (DUF3531) [Arabidopsis thaliana]
AT5G08420	0.860537954557272	0.219978686425298	9.15670880357215e-05	0.00201042429572235	Up	51.20	77.73	127.98	109.56	AT5G08420	GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:1990904,ribonucleoprotein complex; 	--	NP_196459.1 RNA-binding KH domain-containing protein [Arabidopsis thaliana]
AT5G08540	-0.626475472610995	0.220092813730707	0.00442145401138526	0.0474054771056475	Down	84.17	86.82	60.62	51.67	AT5G08540	GO:0003674,molecular_function; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0008168,methyltransferase activity; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0032259,methylation; 	--	NP_568200.1 ribosomal RNA small subunit methyltransferase J [Arabidopsis thaliana]
AT5G08600	2.47372478947826	0.618046263926043	6.26789754624711e-05	0.00148667818472649	Up	1.00	1.30	7.86	5.05	AT5G08600	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:1990904,ribonucleoprotein complex; 	UTP14; U3 small nucleolar RNA-associated protein 14; K14567; 	NP_001331282.1 U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]
AT5G09225	2.72065684171694	0.841272031872048	0.00122078046822494	1	Up	6.79	6.22	47.28	39.82	AT5G09225	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_974752.1 transmembrane protein [Arabidopsis thaliana]
AT5G09330	1.57725230546355	0.42768416487911	0.000226121044755608	0.0043088042399283	Up	6.53	5.61	18.82	18.00	AT5G09330	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; 	--	NP_001078551.1 NAC domain containing protein 82 [Arabidopsis thaliana]
AT5G09370	-1.60539492583974	0.735699235006714	0.0290995832357956	1	Down	23.48	14.67	5.97	6.82	AT5G09370	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0006869,lipid transport; GO:0008289,lipid binding; GO:0016020,membrane; 	--	NP_850800.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT5G09380	0.816913086772869	0.403455839074048	0.0428889989631425	0.250724803080954	Up	22.09	13.79	31.03	33.33	AT5G09380	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005666,RNA polymerase III complex; GO:0006383,transcription by RNA polymerase III; 	RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4; K03026; 	NP_001332087.1 RNA polymerase III RPC4 [Arabidopsis thaliana]
AT5G09790	2.44392322516796	1.05470795426886	0.0204952167712764	1	Up	1.03	0.68	5.62	3.81	AT5G09790	GO:0003712,transcription coregulator activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006275,regulation of DNA replication; GO:0006325,chromatin organization; GO:0006351,DNA-templated transcription; GO:0008168,methyltransferase activity; GO:0009294,DNA-mediated transformation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009555,pollen development; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042393,histone binding; GO:0045892,negative regulation of DNA-templated transcription; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0046872,metal ion binding; GO:0046976,histone methyltransferase activity (H3-K27 specific); GO:0051171,regulation of nitrogen compound metabolic process; GO:0051726,regulation of cell cycle; GO:0060255,regulation of macromolecule metabolic process; GO:0070734,histone H3-K27 methylation; GO:0080090,regulation of primary metabolic process; 	--	NP_001318519.1 TRITHORAX-RELATED PROTEIN 5 [Arabidopsis thaliana]
AT5G09810	-0.645386153525492	0.0941091182753476	6.99049296667067e-12	7.6740765709336e-10	Down	800.39	795.68	519.26	517.59	AT5G09810	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0006893,Golgi to plasma membrane transport; GO:0007010,cytoskeleton organization; GO:0008104,protein localization; GO:0009416,response to light stimulus; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009570,chloroplast stroma; GO:0009611,response to wounding; GO:0009733,response to auxin; GO:0009845,seed germination; GO:0009941,chloroplast envelope; GO:0010053,root epidermal cell differentiation; GO:0015031,protein transport; GO:0016787,hydrolase activity; GO:0048364,root development; GO:0048767,root hair elongation; GO:0051301,cell division; 	--	NP_196543.1 actin 7 [Arabidopsis thaliana]
AT5G10100	2.40939369873078	1.12310761245773	0.0319295132404675	1	Up	1.21	0.44	6.69	2.24	AT5G10100	GO:0003824,catalytic activity; GO:0004805,trehalose-phosphatase activity; GO:0005992,trehalose biosynthetic process; GO:0016787,hydrolase activity; 	otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]; K01087; 	NP_001318525.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Arabidopsis thaliana]
AT5G10360	0.6201484944045	0.12885482018675	1.48853251827025e-06	5.6468641862821e-05	Up	384.55	334.07	526.87	596.35	AT5G10360	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0005886,plasma membrane; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:0110165,cellular anatomical entity; GO:1990904,ribonucleoprotein complex; 	RP-S6e, RPS6; small subunit ribosomal protein S6e; K02991; 	NP_196598.1 Ribosomal protein S6e [Arabidopsis thaliana]
AT5G10490	-1.0369925869189	0.43844218079985	0.0180215416701281	0.139389520219197	Down	10.91	12.37	4.80	6.80	AT5G10490	GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009526,plastid envelope; GO:0009536,plastid; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0031969,chloroplast membrane; GO:0055085,transmembrane transport; 	--	NP_001190278.1 MSCS-like 2 [Arabidopsis thaliana]
AT5G11090	0.795257746639517	0.342315799567342	0.0201700294693137	0.15027629647035	Up	37.62	27.17	59.85	54.39	AT5G11090	--	--	NP_196670.1 serine-rich protein-like protein [Arabidopsis thaliana]
AT5G11280	-0.629447500217278	0.293138047654663	0.0317715308957959	0.207434653032815	Down	69.54	82.16	48.74	50.96	AT5G11280	GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_568247.1 tail fiber [Arabidopsis thaliana]
AT5G11630	1.64594517244141	0.408296062019864	5.54800233268429e-05	0.00135478285308954	Up	34.23	43.47	159.96	85.92	AT5G11630	GO:0005739,mitochondrion; GO:0006952,defense response; GO:0009617,response to bacterium; GO:0009635,response to herbicide; GO:0010311,lateral root formation; GO:0010821,regulation of mitochondrion organization; GO:0019372,lipoxygenase pathway; GO:0031407,oxylipin metabolic process; GO:0042742,defense response to bacterium; GO:0048311,mitochondrion distribution; GO:0048364,root development; GO:0050832,defense response to fungus; GO:0052543,callose deposition in cell wall; GO:0071433,cell wall repair; GO:2000023,regulation of lateral root development; GO:2000280,regulation of root development; 	--	NP_001332362.1 hypothetical protein AT5G11630 [Arabidopsis thaliana]
AT5G11900	0.824368842054555	0.288907817009248	0.00432544795307265	0.0466132655948474	Up	45.92	47.45	86.48	81.39	AT5G11900	GO:0001731,formation of translation preinitiation complex; GO:0002188,translation reinitiation; GO:0003729,mRNA binding; GO:0003743,translation initiation factor activity; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006413,translational initiation; GO:1990904,ribonucleoprotein complex; 	--	NP_196751.2 Translation initiation factor SUI1 family protein [Arabidopsis thaliana]
AT5G12350	-1.18162942000021	0.420731922176592	0.00497714802124837	0.051580218215193	Down	8.20	8.30	3.14	4.30	AT5G12350	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; GO:0046872,metal ion binding; 	--	NP_568268.3 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]
AT5G12940	-1.43877949174828	0.209707526268582	6.84346224692934e-12	7.6281983862106e-10	Down	155.35	148.37	45.36	69.19	AT5G12940	GO:0005515,protein binding; 	--	NP_196798.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT5G12980	1.21432506671617	0.327780812357867	0.000211652550032828	0.00406431870457776	Up	20.28	18.43	45.43	45.88	AT5G12980	GO:0000932,P-body; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0017148,negative regulation of translation; GO:0030015,CCR4-NOT core complex; 	RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9; K12606; 	NP_196802.1 Cell differentiation, Rcd1-like protein [Arabidopsis thaliana]
AT5G13210	1.9682568276638	0.730907188722626	0.00708344238146444	1	Up	1.74	0.89	6.17	4.29	AT5G13210	GO:0003674,molecular_function; 	--	NP_196825.1 Uncharacterized conserved protein UCP015417, vWA [Arabidopsis thaliana]
AT5G13380	-0.762567834281772	0.201772769029062	0.000157244790297085	0.00314713099350668	Down	68.23	59.05	35.45	40.95	AT5G13380	GO:0005737,cytoplasm; GO:0016881,acid-amino acid ligase activity; 	GH3; auxin responsive GH3 gene family; K14487; 	NP_196842.2 Auxin-responsive GH3 family protein [Arabidopsis thaliana]
AT5G13420	-0.624317661007106	0.188032267863325	0.00089930832918454	0.0134570806073995	Down	101.40	115.36	64.82	78.40	AT5G13420	GO:0004801,transaldolase activity; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005975,carbohydrate metabolic process; GO:0006098,pentose-phosphate shunt; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009749,response to glucose; GO:0009809,lignin biosynthetic process; 	E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2]; K00616; 	NP_196846.1 Aldolase-type TIM barrel family protein [Arabidopsis thaliana]
AT5G13510	-0.681105920803272	0.197750220394893	0.00057259534135707	0.00939556244647415	Down	188.35	163.51	109.94	113.20	AT5G13510	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L10, MRPL10, rplJ; large subunit ribosomal protein L10; K02864; 	NP_196855.1 Ribosomal protein L10 family protein [Arabidopsis thaliana]
AT5G13580	-1.29642965015429	0.435084959971166	0.00288515665506426	0.0338222483496016	Down	14.16	10.97	6.33	3.97	AT5G13580	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0009624,response to nematode; GO:0010345,suberin biosynthetic process; GO:0016020,membrane; GO:0042626,ATPase-coupled transmembrane transporter activity; GO:0055085,transmembrane transport; GO:0140359,ABC-type transporter activity; GO:1903825,organic acid transmembrane transport; 	ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2; K05681; 	NP_196862.1 ABC-2 type transporter family protein [Arabidopsis thaliana]
AT5G14020	4.274063916943	2.07564751669819	0.0394801327393002	1	Up	0.00	0.20	0.79	3.05	AT5G14020	GO:0003674,molecular_function; GO:0005773,vacuole; 	--	NP_001318557.1 Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana]
AT5G14050	0.672823133872585	0.290215581837877	0.0204299628488392	0.151575172930533	Up	16.99	20.24	31.67	28.55	AT5G14050	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0032040,small-subunit processome; GO:0034388,Pwp2p-containing subcomplex of 90S preribosome; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	UTP18; U3 small nucleolar RNA-associated protein 18; K14553; 	NP_196909.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT5G14320	-0.759255136916571	0.163275411870025	3.31693890551427e-06	0.000113664715809129	Down	318.30	326.17	194.56	192.28	AT5G14320	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-S13, rpsM; small subunit ribosomal protein S13; K02952; 	NP_568299.1 Ribosomal protein S13/S18 family [Arabidopsis thaliana]
AT5G14380	-1.32748939866629	0.414097549655027	0.00134715290382426	0.0185476490254605	Down	73.44	55.14	25.33	26.81	AT5G14380	GO:0005886,plasma membrane; GO:0009860,pollen tube growth; GO:0010208,pollen wall assembly; GO:0016020,membrane; GO:0031012,extracellular matrix; 	--	NP_196942.1 arabinogalactan protein 6 [Arabidopsis thaliana]
AT5G14440	0.80893671130408	0.401275720444779	0.0438091339674639	0.254544406026412	Up	16.53	17.28	25.34	35.04	AT5G14440	--	--	NP_001031882.1 Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]
AT5G14520	0.877893081496198	0.23221457477234	0.000156497796739357	0.00314135140542349	Up	23.65	26.72	46.82	47.22	AT5G14520	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466,maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; GO:0043021,ribonucleoprotein complex binding; GO:0070545,PeBoW complex; GO:0090069,regulation of ribosome biogenesis; GO:2000232,regulation of rRNA processing; 	--	NP_196956.1 pescadillo-like protein [Arabidopsis thaliana]
AT5G14540	0.700007294661205	0.327681070597492	0.0326593881289838	0.210681076307875	Up	18.81	12.53	27.71	24.01	AT5G14540	GO:0003674,molecular_function; GO:0042735,protein body; 	--	NP_196958.2 basic salivary proline-rich-like protein (DUF1421) [Arabidopsis thaliana]
AT5G14580	0.776125871902907	0.357812095090945	0.0300760141303606	0.199514949351403	Up	7.64	5.62	10.32	12.83	AT5G14580	GO:0000175,3'-5'-exoribonuclease activity; GO:0000957,mitochondrial RNA catabolic process; GO:0000958,mitochondrial mRNA catabolic process; GO:0000963,mitochondrial RNA processing; GO:0000965,mitochondrial RNA 3'-end processing; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0004654,polyribonucleotide nucleotidyltransferase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0006397,mRNA processing; GO:0006401,RNA catabolic process; GO:0006402,mRNA catabolic process; GO:0008033,tRNA processing; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0016787,hydrolase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis; GO:0090503,RNA phosphodiester bond hydrolysis, exonucleolytic; 	pnp, PNPT1; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]; K00962; 	NP_196962.1 polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
AT5G14700	0.739208354754978	0.240537081062466	0.00211806607711501	0.0265400097844562	Up	38.49	35.79	67.38	58.48	AT5G14700	GO:0005575,cellular_component; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; 	--	NP_196974.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT5G14760	-1.19241341007447	0.323683133055043	0.000229700414855232	0.00435693218085497	Down	23.48	33.57	15.01	10.20	AT5G14760	GO:0000166,nucleotide binding; GO:0008734,L-aspartate oxidase activity; GO:0009435,NAD biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0019363,pyridine nucleotide biosynthetic process; GO:0044318,L-aspartate:fumarate oxidoreductase activity; 	nadB; L-aspartate oxidase [EC:1.4.3.16]; K00278; 	NP_568304.1 L-aspartate oxidase [Arabidopsis thaliana]
AT5G14780	-1.23542942343705	0.164281787802561	5.46988207778259e-14	9.29505303765658e-12	Down	177.08	173.39	71.99	79.53	AT5G14780	GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008863,formate dehydrogenase (NAD+) activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0016491,oxidoreductase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0042183,formate catabolic process; GO:0051287,NAD binding; 	FDH; formate dehydrogenase [EC:1.17.1.9]; K00122; 	NP_001330044.1 formate dehydrogenase [Arabidopsis thaliana]
AT5G15110	-1.18986261816614	0.287076857822162	3.40180443633194e-05	0.000880989228240036	Down	43.92	57.53	26.87	18.04	AT5G15110	GO:0030570,pectate lyase activity; 	pel; pectate lyase [EC:4.2.2.2]; K01728; 	NP_197015.4 Pectate lyase family protein [Arabidopsis thaliana]
AT5G15140	-1.17369529793968	0.235043204990491	5.92855683712184e-07	2.38005655548532e-05	Down	59.81	59.61	27.26	26.51	AT5G15140	GO:0003824,catalytic activity; GO:0004034,aldose 1-epimerase activity; GO:0005975,carbohydrate metabolic process; GO:0006006,glucose metabolic process; GO:0016853,isomerase activity; GO:0030246,carbohydrate binding; GO:0033499,galactose catabolic process via UDP-galactose; 	galM, GALM; aldose 1-epimerase [EC:5.1.3.3]; K01785; 	NP_197018.1 Galactose mutarotase-like superfamily protein [Arabidopsis thaliana]
AT5G15200	0.590259689988823	0.0921072947292956	1.47061985348469e-10	1.27573701276067e-08	Up	1420.69	1491.42	2129.82	2325.97	AT5G15200	GO:0000325,plant-type vacuole; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042274,ribosomal small subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S9e, RPS9; small subunit ribosomal protein S9e; K02997; 	NP_197024.1 Ribosomal protein S4 [Arabidopsis thaliana]
AT5G15310	0.761918386960345	0.34040194237536	0.0252021261947619	0.176628460703967	Up	19.02	18.29	31.13	33.22	AT5G15310	GO:0000902,cell morphogenesis; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0035017,cuticle pattern formation; GO:1901957,regulation of cutin biosynthetic process; 	--	NP_001330733.1 myb domain protein 16 [Arabidopsis thaliana]
AT5G15350	-0.664933518967268	0.176107820163583	0.000159547224665945	0.00318709069562165	Down	292.98	278.84	175.55	191.41	AT5G15350	GO:0000325,plant-type vacuole; GO:0005886,plasma membrane; GO:0009055,electron transfer activity; GO:0009536,plastid; GO:0016020,membrane; GO:0022900,electron transport chain; 	--	NP_197039.1 early nodulin-like protein 17 [Arabidopsis thaliana]
AT5G15380	-3.96757472512751	1.93728240232683	0.0405589693697056	1	Down	2.12	0.96	0.18	0.00	AT5G15380	GO:0003677,DNA binding; GO:0003886,DNA (cytosine-5-)-methyltransferase activity; GO:0005634,nucleus; GO:0006306,DNA methylation; GO:0006346,DNA methylation-dependent heterochromatin formation; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0032259,methylation; GO:0050832,defense response to fungus; GO:0051567,histone H3-K9 methylation; GO:0090116,C-5 methylation of cytosine; 	--	NP_197042.2 domains rearranged methylase 1 [Arabidopsis thaliana]
AT5G15520	0.794061871214753	0.366565350377585	0.0302942382733958	0.200640697160425	Up	41.76	37.55	69.52	70.29	AT5G15520	GO:0000028,ribosomal small subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S19e, RPS19; small subunit ribosomal protein S19e; K02966; 	NP_197056.1 Ribosomal protein S19e family protein [Arabidopsis thaliana]
AT5G15550	0.872257794561952	0.275714564683842	0.00155816831112631	0.020873734232745	Up	23.46	26.37	40.35	52.52	AT5G15550	GO:0000463,maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466,maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009506,plasmodesma; GO:0030687,preribosome, large subunit precursor; GO:0042254,ribosome biogenesis; GO:0042273,ribosomal large subunit biogenesis; GO:0043021,ribonucleoprotein complex binding; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_001332618.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT5G15750	0.847969597184444	0.320062963206562	0.00806387215064315	0.0758395254198092	Up	39.26	54.41	96.50	74.28	AT5G15750	GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0019843,rRNA binding; GO:0022627,cytosolic small ribosomal subunit; GO:0030515,snoRNA binding; GO:0032040,small-subunit processome; GO:0034457,Mpp10 complex; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex; 	IMP3; U3 small nucleolar ribonucleoprotein protein IMP3; K14560; 	NP_568321.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Arabidopsis thaliana]
AT5G15810	0.819901857055181	0.310278025039803	0.00823025936269383	0.076821946873	Up	14.73	13.44	28.03	22.40	AT5G15810	GO:0000049,tRNA binding; GO:0002940,tRNA N2-guanine methylation; GO:0003723,RNA binding; GO:0004809,tRNA (guanine-N2-)-methyltransferase activity; GO:0005634,nucleus; GO:0008033,tRNA processing; GO:0008168,methyltransferase activity; GO:0016740,transferase activity; GO:0030488,tRNA methylation; GO:0032259,methylation; 	--	CAD5331800.1 unnamed protein product [Arabidopsis thaliana]
AT5G16080	-5.70215466423829	1.91571415954197	0.00291543463553028	1	Down	2.49	4.48	0.00	0.00	AT5G16080	GO:0005515,protein binding; GO:0005575,cellular_component; GO:0016787,hydrolase activity; GO:0052689,carboxylic ester hydrolase activity; 	--	NP_197112.1 carboxyesterase 17 [Arabidopsis thaliana]
AT5G16110	0.6064579626212	0.189577692822581	0.00137907885684905	0.0189032853250967	Up	153.32	217.22	256.18	317.54	AT5G16110	GO:0003674,molecular_function; 	--	NP_568326.2 hypothetical protein AT5G16110 [Arabidopsis thaliana]
AT5G16120	0.708317185797257	0.359731870296632	0.0489514524913188	0.273040813019249	Up	16.17	15.77	25.04	28.07	AT5G16120	GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016020,membrane; GO:0016298,lipase activity; GO:0047372,acylglycerol lipase activity; 	CSE; caffeoylshikimate esterase [EC:3.1.1.-]; K18368; 	NP_001330024.1 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT5G16130	0.749382907349379	0.134469736133228	2.50570683492308e-08	1.33885637699067e-06	Up	302.98	327.61	554.17	522.39	AT5G16130	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006364,rRNA processing; GO:0006412,translation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0032040,small-subunit processome; GO:0042274,ribosomal small subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S7e, RPS7; small subunit ribosomal protein S7e; K02993; 	NP_197117.1 Ribosomal protein S7e family protein [Arabidopsis thaliana]
AT5G16180	-0.96810614275589	0.367931210732787	0.00850801781641263	0.0787626574720885	Down	13.98	17.62	7.13	9.36	AT5G16180	GO:0000373,Group II intron splicing; GO:0000375,RNA splicing, via transesterification reactions; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0006397,mRNA processing; GO:0006417,regulation of translation; GO:0008380,RNA splicing; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:1990904,ribonucleoprotein complex; 	--	NP_001332392.1 maize chloroplast splicing factor-like protein [Arabidopsis thaliana]
AT5G16350	1.79971024637638	0.901086494616849	0.0457961950224558	1	Up	2.32	1.19	10.94	1.43	AT5G16350	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005886,plasma membrane; GO:0008374,O-acyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0019432,triglyceride biosynthetic process; GO:0045017,glycerolipid biosynthetic process; GO:0047196,long-chain-alcohol O-fatty-acyltransferase activity; GO:0102966,arachidoyl-CoA:1-dodecanol O-acyltransferase activity; 	--	NP_001332615.1 O-acyltransferase (WSD1-like) family protein [Arabidopsis thaliana]
AT5G16370	-0.884532617437343	0.308040788330884	0.00408556083602408	0.0447715390202108	Down	26.41	28.72	14.44	15.95	AT5G16370	GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0016874,ligase activity; 	--	NP_197141.1 acyl activating enzyme 5 [Arabidopsis thaliana]
AT5G16400	-1.54580076302535	0.437682172211257	0.000412759696168967	0.00711682030783216	Down	75.58	49.84	13.91	30.32	AT5G16400	GO:0005515,protein binding; GO:0008047,enzyme activator activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009642,response to light intensity; GO:0043085,positive regulation of catalytic activity; GO:0045454,cell redox homeostasis; 	trxA; thioredoxin 1; K03671; 	NP_197144.1 thioredoxin F2 [Arabidopsis thaliana]
AT5G16510	-0.890465709294753	0.232623779291701	0.000129229632819719	0.00266737703016408	Down	76.53	89.28	46.09	44.75	AT5G16510	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0005829,cytosol; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009832,plant-type cell wall biogenesis; GO:0016740,transferase activity; GO:0016853,isomerase activity; GO:0016866,intramolecular transferase activity; GO:0033356,UDP-L-arabinose metabolic process; GO:0071555,cell wall organization; GO:0071669,plant-type cell wall organization or biogenesis; 	RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30]; K13379; 	NP_197155.1 Alpha-1,4-glucan-protein synthase family protein [Arabidopsis thaliana]
AT5G16750	1.01113008283736	0.176945874252623	1.10126235990362e-08	6.49028861533514e-07	Up	30.90	28.77	59.00	63.32	AT5G16750	GO:0000472,endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000480,endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0009793,embryo development ending in seed dormancy; GO:0009880,embryonic pattern specification; GO:0030686,90S preribosome; GO:0032040,small-subunit processome; GO:0034511,U3 snoRNA binding; GO:0051301,cell division; 	UTP13, TBL3; U3 small nucleolar RNA-associated protein 13; K14555; 	NP_568338.2 Transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]
AT5G16920	-0.999443552851963	0.307877948033179	0.00116943088296502	0.0165602626748643	Down	66.55	57.78	33.26	29.82	AT5G16920	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_568341.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]
AT5G16930	0.746104013761636	0.378794940902068	0.0488753003920038	0.272861431756439	Up	8.23	8.65	13.78	15.02	AT5G16930	GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0007005,mitochondrion organization; GO:0016887,ATP hydrolysis activity; 	--	NP_197195.2 AAA-type ATPase family protein [Arabidopsis thaliana]
AT5G16960	-1.0597159690361	0.166341049294184	1.88115419307591e-10	1.60935984586942e-08	Down	196.25	190.96	87.52	101.68	AT5G16960	GO:0006979,response to oxidative stress; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0016628,oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; GO:0032440,2-alkenal reductase [NAD(P)+] activity; 	E1.3.1.74; 2-alkenal reductase [EC:1.3.1.74]; K08070; 	NP_001318576.1 Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]
AT5G17090	-2.88227499760111	1.03815211005631	0.00549727688541436	1	Down	12.51	10.03	2.92	0.00	AT5G17090	--	--	NP_197211.1 Cystatin/monellin superfamily protein [Arabidopsis thaliana]
AT5G17920	-0.833913182283697	0.0747428577277246	6.6116649660698e-29	5.85840742172113e-26	Down	1941.30	1921.77	1100.01	1102.09	AT5G17920	GO:0000325,plant-type vacuole; GO:0003729,mRNA binding; GO:0003871,5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity; GO:0005507,copper ion binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006346,DNA methylation-dependent heterochromatin formation; GO:0008168,methyltransferase activity; GO:0008172,S-methyltransferase activity; GO:0008270,zinc ion binding; GO:0008652,cellular amino acid biosynthetic process; GO:0008705,methionine synthase activity; GO:0009086,methionine biosynthetic process; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009570,chloroplast stroma; GO:0010043,response to zinc ion; GO:0016740,transferase activity; GO:0032259,methylation; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0051574,positive regulation of histone H3-K9 methylation; GO:0071266,'de novo' L-methionine biosynthetic process; 	metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]; K00549; 	NP_001078599.1 Cobalamin-independent synthase family protein [Arabidopsis thaliana]
AT5G17990	0.975244703733642	0.234742246605819	3.25950791367008e-05	0.00085943694366418	Up	34.05	29.51	66.48	60.44	AT5G17990	GO:0000162,tryptophan biosynthetic process; GO:0004048,anthranilate phosphoribosyltransferase activity; GO:0005829,cytosol; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0016740,transferase activity; GO:0016757,glycosyltransferase activity; GO:0016763,pentosyltransferase activity; GO:0046872,metal ion binding; 	trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]; K00766; 	NP_197300.1 tryptophan biosynthesis 1 [Arabidopsis thaliana]
AT5G18100	1.15324925784666	0.332399253413257	0.000521486185881972	0.00868326998102801	Up	35.44	35.41	77.57	82.67	AT5G18100	GO:0000325,plant-type vacuole; GO:0004784,superoxide dismutase activity; GO:0005507,copper ion binding; GO:0005777,peroxisome; GO:0006801,superoxide metabolic process; GO:0006979,response to oxidative stress; GO:0016209,antioxidant activity; GO:0016491,oxidoreductase activity; GO:0019430,removal of superoxide radicals; GO:0046872,metal ion binding; GO:0071457,cellular response to ozone; GO:0071472,cellular response to salt stress; GO:0071484,cellular response to light intensity; GO:0071486,cellular response to high light intensity; GO:0071493,cellular response to UV-B; GO:0098869,cellular oxidant detoxification; 	SOD1; superoxide dismutase, Cu-Zn family [EC:1.15.1.1]; K04565; 	NP_197311.1 copper/zinc superoxide dismutase 3 [Arabidopsis thaliana]
AT5G18310	0.747808871748292	0.269788351145191	0.00557412340780993	0.0563545239395943	Up	74.38	63.87	109.80	126.53	AT5G18310	GO:0003674,molecular_function; GO:0016787,hydrolase activity; 	--	NP_001331858.1 ubiquitin hydrolase [Arabidopsis thaliana]
AT5G18500	-0.589378078599263	0.233111667230518	0.0114613776380461	0.0993935020175589	Down	61.67	54.51	34.32	44.42	AT5G18500	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005575,cellular_component; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016020,membrane; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; 	--	NP_001031898.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT5G18550	-1.11028540770715	0.501637310691965	0.0268753836176519	0.185010618078231	Down	16.16	10.62	6.72	5.86	AT5G18550	GO:0003677,DNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0008150,biological_process; GO:0046872,metal ion binding; 	--	NP_197356.2 Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]
AT5G18660	-0.726009044320654	0.272692287606798	0.00775914542005138	0.0736436105093629	Down	44.28	44.97	28.79	25.95	AT5G18660	GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0033728,divinyl chlorophyllide a 8-vinyl-reductase activity; GO:0051744,3,8-divinyl protochlorophyllide a 8-vinyl reductase activity; 	DVR; divinyl chlorophyllide a 8-vinyl-reductase [EC:1.3.1.75]; K19073; 	NP_197367.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT5G18748	2.61447551390438	0.724924222715864	0.000310294994109664	1	Up	13.39	6.13	48.21	74.37	AT5G18748	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001119250.1 hypothetical protein AT5G18748 [Arabidopsis thaliana]
AT5G18800	0.750799352786905	0.313959376398517	0.0167847070011193	0.132458548537605	Up	70.07	92.25	130.35	147.31	AT5G18800	GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0005758,mitochondrial intermembrane space; GO:0006120,mitochondrial electron transport, NADH to ubiquinone; GO:0009536,plastid; GO:0070469,respirasome; 	NDUFA8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8; K03952; 	NP_197381.1 Cox19-like CHCH family protein [Arabidopsis thaliana]
AT5G19070	-0.876959159805987	0.422332300933078	0.0378507639938983	0.231413862663533	Down	23.10	34.04	18.28	13.16	AT5G19070	GO:0003674,molecular_function; GO:0016020,membrane; GO:0016021,integral component of membrane; 	--	NP_197408.2 SNARE associated Golgi protein family [Arabidopsis thaliana]
AT5G19310	0.969639624444599	0.42976321059813	0.0240569624452045	0.171122879911402	Up	3.52	3.63	7.29	6.92	AT5G19310	GO:0000166,nucleotide binding; GO:0003677,DNA binding; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0008094,ATP-dependent activity, acting on DNA; GO:0009826,unidimensional cell growth; GO:0010078,maintenance of root meristem identity; GO:0010231,maintenance of seed dormancy; GO:0010492,maintenance of shoot apical meristem identity; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0031490,chromatin DNA binding; GO:0042393,histone binding; GO:0045944,positive regulation of transcription by RNA polymerase II; GO:0140658,ATP-dependent chromatin remodeler activity; 	--	NP_197432.2 homeotic protein regulator [Arabidopsis thaliana]
AT5G19340	1.16016022458429	0.487859484448885	0.0174038874333867	0.13608675879988	Up	9.47	11.70	21.30	26.84	AT5G19340	GO:0005515,protein binding; 	--	NP_197435.2 hypothetical protein AT5G19340 [Arabidopsis thaliana]
AT5G19530	-0.91685098286993	0.328148631770037	0.00520586606990813	0.0534592455274921	Down	36.75	50.49	25.14	21.69	AT5G19530	GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0006596,polyamine biosynthetic process; GO:0009926,auxin polar transport; GO:0010087,phloem or xylem histogenesis; GO:0010487,thermospermine synthase activity; GO:0016740,transferase activity; GO:0016768,spermine synthase activity; GO:0048759,xylem vessel member cell differentiation; 	ACL5; thermospermine synthase [EC:2.5.1.79]; K18787; 	NP_568376.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT5G19550	-0.640948430823225	0.20675333339127	0.00193479257732266	0.0246417884206238	Down	91.37	93.23	67.88	52.00	AT5G19550	GO:0000325,plant-type vacuole; GO:0003824,catalytic activity; GO:0004069,L-aspartate:2-oxoglutarate aminotransferase activity; GO:0005507,copper ion binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006103,2-oxoglutarate metabolic process; GO:0006520,cellular amino acid metabolic process; GO:0006531,aspartate metabolic process; GO:0006536,glutamate metabolic process; GO:0006807,nitrogen compound metabolic process; GO:0008483,transaminase activity; GO:0009058,biosynthetic process; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016740,transferase activity; GO:0030170,pyridoxal phosphate binding; GO:0071456,cellular response to hypoxia; 	GOT1; aspartate aminotransferase, cytoplasmic [EC:2.6.1.1]; K14454; 	NP_197456.1 aspartate aminotransferase 2 [Arabidopsis thaliana]
AT5G19760	-0.864901697161448	0.161504171629176	8.54192393519504e-08	4.04437276397307e-06	Down	234.55	237.41	143.71	118.97	AT5G19760	GO:0000325,plant-type vacuole; GO:0005310,dicarboxylic acid transmembrane transporter activity; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0006835,dicarboxylic acid transport; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009941,chloroplast envelope; GO:0015142,tricarboxylic acid transmembrane transporter activity; GO:0016020,membrane; GO:0022857,transmembrane transporter activity; GO:0035674,tricarboxylic acid transmembrane transport; GO:0055085,transmembrane transport; 	--	NP_197477.1 Mitochondrial substrate carrier family protein [Arabidopsis thaliana]
AT5G19855	0.915451800430154	0.299983863389332	0.0022757203010252	0.0280517114413844	Up	38.32	38.51	73.59	73.65	AT5G19855	GO:0006457,protein folding; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0015977,carbon fixation; GO:0015979,photosynthesis; GO:0044183,protein folding chaperone; GO:0061077,chaperone-mediated protein folding; GO:0110102,ribulose bisphosphate carboxylase complex assembly; 	--	NP_001330979.1 Chaperonin-like RbcX protein [Arabidopsis thaliana]
AT5G19940	-0.597357403124205	0.238892563675139	0.0124008536916149	0.10558173647528	Down	90.63	108.42	65.27	68.50	AT5G19940	GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010287,plastoglobule; 	--	NP_197494.1 Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]
AT5G20020	0.878538645945179	0.179082991113735	9.3065019172072e-07	3.58531541251414e-05	Up	117.14	117.93	218.38	220.81	AT5G20020	GO:0000054,ribosomal subunit export from nucleus; GO:0000166,nucleotide binding; GO:0003729,mRNA binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005794,Golgi apparatus; GO:0006606,protein import into nucleus; GO:0006913,nucleocytoplasmic transport; GO:0009536,plastid; GO:0015031,protein transport; 	RAN; GTP-binding nuclear protein Ran; K07936; 	NP_197502.1 RAS-related GTP-binding nuclear protein 2 [Arabidopsis thaliana]
AT5G20040	0.768285990596353	0.326340881700537	0.0185604343641803	0.141648815648582	Up	16.28	14.98	27.04	27.07	AT5G20040	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0006400,tRNA modification; GO:0008033,tRNA processing; GO:0009691,cytokinin biosynthetic process; GO:0016740,transferase activity; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; GO:0052381,tRNA dimethylallyltransferase activity; 	miaA, TRIT1; tRNA dimethylallyltransferase [EC:2.5.1.75]; K00791; 	NP_851043.1 isopentenyltransferase 9 [Arabidopsis thaliana]
AT5G20080	-0.650479595446789	0.230360025928715	0.00474650887806978	0.0499506992504651	Down	76.91	84.27	51.63	52.74	AT5G20080	GO:0004128,cytochrome-b5 reductase activity, acting on NAD(P)H; GO:0005507,copper ion binding; GO:0005739,mitochondrion; GO:0005758,mitochondrial intermembrane space; GO:0005794,Golgi apparatus; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0016491,oxidoreductase activity; 	E1.6.2.2; cytochrome-b5 reductase [EC:1.6.2.2]; K00326; 	NP_568391.1 FAD/NAD(P)-binding oxidoreductase [Arabidopsis thaliana]
AT5G20160	1.07792573562472	0.18117810935213	2.68903227206377e-09	1.82281122048913e-07	Up	158.59	146.39	348.49	305.18	AT5G20160	GO:0000398,mRNA splicing, via spliceosome; GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0009536,plastid; GO:0016020,membrane; GO:0030490,maturation of SSU-rRNA; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; GO:0046540,U4/U6 x U5 tri-snRNP complex; GO:0071011,precatalytic spliceosome; GO:1990904,ribonucleoprotein complex; 	SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13; K12845; 	NP_197516.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]
AT5G20165	-0.821951158518406	0.397304136599502	0.0385628829440555	0.234266681156224	Down	85.13	78.60	56.90	36.57	AT5G20165	GO:0000139,Golgi membrane; GO:0003674,molecular_function; GO:0009306,protein secretion; GO:0016020,membrane; GO:0046907,intracellular transport; 	--	NP_001078607.1 kish-A-like protein [Arabidopsis thaliana]
AT5G20200	1.30069658253537	0.247510297082015	1.47927109528414e-07	6.72174283406583e-06	Up	20.78	31.16	79.31	50.41	AT5G20200	GO:0005515,protein binding; GO:0005635,nuclear envelope; GO:0071763,nuclear membrane organization; 	--	NP_197520.1 nucleoporin-like protein [Arabidopsis thaliana]
AT5G20230	-0.614566082693656	0.243198788291717	0.0115037805979134	0.0994455737401507	Down	142.32	143.35	113.05	75.61	AT5G20230	GO:0000325,plant-type vacuole; GO:0002239,response to oomycetes; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006979,response to oxidative stress; GO:0009055,electron transfer activity; GO:0009536,plastid; GO:0009646,response to absence of light; GO:0015690,aluminum cation transport; GO:0016020,membrane; GO:0022900,electron transport chain; GO:0046872,metal ion binding; GO:0070417,cellular response to cold; GO:0071456,cellular response to hypoxia; GO:1901141,regulation of lignin biosynthetic process; 	--	NP_197523.1 blue-copper-binding protein [Arabidopsis thaliana]
AT5G20290	0.959084935235537	0.0929297779111941	5.69057582067961e-25	3.26013616351161e-22	Up	912.29	975.75	1844.11	1885.69	AT5G20290	GO:0000462,maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S8e, RPS8; small subunit ribosomal protein S8e; K02995; 	NP_197529.1 Ribosomal protein S8e family protein [Arabidopsis thaliana]
AT5G20570	0.771003222647512	0.300936869475308	0.0104068368115275	0.0924100290959185	Up	57.72	57.58	113.18	86.22	AT5G20570	GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008270,zinc ion binding; GO:0009733,response to auxin; GO:0009734,auxin-activated signaling pathway; GO:0009753,response to jasmonic acid; GO:0009867,jasmonic acid mediated signaling pathway; GO:0016567,protein ubiquitination; GO:0019005,SCF ubiquitin ligase complex; GO:0031461,cullin-RING ubiquitin ligase complex; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0097602,cullin family protein binding; 	RBX1, ROC1; RING-box protein 1 [EC:2.3.2.32]; K03868; 	NP_568396.1 RING-box 1 [Arabidopsis thaliana]
AT5G20600	0.628458081280087	0.266393863999753	0.0183177772873717	0.140613878248667	Up	24.62	21.74	38.83	33.91	AT5G20600	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0006364,rRNA processing; GO:0030687,preribosome, large subunit precursor; GO:0030688,preribosome, small subunit precursor; 	--	NP_197560.2 ribosomal RNA processing-like protein [Arabidopsis thaliana]
AT5G20630	-0.847052768308121	0.111402720374152	2.88183574026033e-14	5.25723122910726e-12	Down	911.00	997.23	533.23	544.99	AT5G20630	GO:0005576,extracellular region; GO:0005634,nucleus; GO:0009536,plastid; GO:0030145,manganese ion binding; GO:0031012,extracellular matrix; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0099503,secretory vesicle; 	--	NP_197563.1 germin 3 [Arabidopsis thaliana]
AT5G20670	1.26130141959169	0.63325834294603	0.0463969146642302	0.264744124383521	Up	14.20	7.25	23.37	29.11	AT5G20670	--	--	NP_197567.1 DUF1677 family protein (DUF1677) [Arabidopsis thaliana]
AT5G20710	-0.594028523187325	0.158115390353066	0.000172010283322798	0.00339234906934707	Down	81.31	86.87	52.23	61.20	AT5G20710	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0030246,carbohydrate binding; GO:0048046,apoplast; 	--	NP_568399.4 beta-galactosidase 7 [Arabidopsis thaliana]
AT5G21482	-0.786603710425985	0.338301578377798	0.0200636571647778	0.149871438645669	Down	21.12	31.72	15.43	15.70	AT5G21482	GO:0003824,catalytic activity; GO:0009690,cytokinin metabolic process; GO:0009823,cytokinin catabolic process; GO:0016491,oxidoreductase activity; GO:0019139,cytokinin dehydrogenase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding; 	CKX; cytokinin dehydrogenase [EC:1.5.99.12]; K00279; 	NP_850863.1 cytokinin oxidase 7 [Arabidopsis thaliana]
AT5G21920	-0.801462194412842	0.378268136495524	0.0341101294572911	0.216881679096717	Down	38.84	36.93	23.53	20.55	AT5G21920	GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0010020,chloroplast fission; GO:0016020,membrane; GO:0090143,nucleoid organization; 	--	NP_680180.1 YGGT family protein [Arabidopsis thaliana]
AT5G22020	-0.832608735175132	0.261331157748466	0.00144239970205845	0.0196626025319066	Down	52.26	65.03	36.07	30.67	AT5G22020	GO:0005773,vacuole; GO:0005783,endoplasmic reticulum; GO:0009058,biosynthetic process; GO:0016844,strictosidine synthase activity; 	--	NP_001331596.1 Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]
AT5G22100	0.888168696897215	0.24374021506367	0.000268521826627766	0.00497166158107079	Up	33.23	39.04	70.00	65.76	AT5G22100	GO:0000479,endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003824,catalytic activity; GO:0004521,endoribonuclease activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006396,RNA processing; GO:0042254,ribosome biogenesis; 	RCL1; RNA 3'-terminal phosphate cyclase-like protein; K11108; 	NP_680196.1 RNA cyclase family protein [Arabidopsis thaliana]
AT5G22120	0.687024878252701	0.29050840011076	0.0180346779485539	0.139389520219197	Up	24.81	25.93	40.13	42.93	AT5G22120	GO:0003676,nucleic acid binding; GO:0008150,biological_process; 	--	NP_680198.1 coiled-coil protein [Arabidopsis thaliana]
AT5G22200	-1.29022589263646	0.63599314684486	0.0424910039694767	0.249220285693313	Down	19.25	17.09	6.93	8.22	AT5G22200	GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0098542,defense response to other organism; 	--	NP_680206.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]
AT5G22400	1.32071403298068	0.385056977061472	0.000603762661594498	0.0098289708885561	Up	9.36	8.64	20.71	25.08	AT5G22400	GO:0003674,molecular_function; GO:0005096,GTPase activator activity; GO:0007165,signal transduction; GO:0050790,regulation of catalytic activity; 	--	NP_197632.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein [Arabidopsis thaliana]
AT5G22430	-0.659608378220241	0.134119703481392	8.74073579614985e-07	3.39902280724887e-05	Down	1751.98	1330.20	905.71	1077.43	AT5G22430	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_568418.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]
AT5G22440	0.76490618832494	0.202775246956626	0.000161822779157763	0.00322170069588076	Up	96.01	103.55	184.20	159.86	AT5G22440	GO:0000470,maturation of LSU-rRNA; GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L10Ae, RPL10A; large subunit ribosomal protein L10Ae; K02865; 	NP_001078612.1 Ribosomal protein L1p/L10e family [Arabidopsis thaliana]
AT5G22630	-0.743847428340892	0.310187302765498	0.0164822137553414	0.13081373105247	Down	40.15	31.23	20.33	23.08	AT5G22630	GO:0004664,prephenate dehydratase activity; GO:0005737,cytoplasm; GO:0006952,defense response; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009094,L-phenylalanine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016829,lyase activity; GO:0047769,arogenate dehydratase activity; 	ADT, PDT; arogenate/prephenate dehydratase [EC:4.2.1.91 4.2.1.51]; K05359; 	NP_197655.1 arogenate dehydratase 5 [Arabidopsis thaliana]
AT5G23060	-0.723091169736221	0.2003704043063	0.000307649456740458	0.00555515503764975	Down	97.89	104.06	67.89	56.08	AT5G23060	GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009704,de-etiolation; GO:0016020,membrane; GO:0071277,cellular response to calcium ion; GO:0090333,regulation of stomatal closure; 	--	NP_197697.1 calcium sensing receptor [Arabidopsis thaliana]
AT5G23070	1.11787383084704	0.498706682063741	0.0249907471960318	0.175742754516312	Up	9.93	8.80	21.86	19.42	AT5G23070	GO:0000166,nucleotide binding; GO:0004797,thymidine kinase activity; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0009157,deoxyribonucleoside monophosphate biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0042802,identical protein binding; GO:0046104,thymidine metabolic process; GO:0046872,metal ion binding; GO:0071897,DNA biosynthetic process; GO:0090351,seedling development; 	tdk, TK; thymidine kinase [EC:2.7.1.21]; K00857; 	NP_568426.1 Thymidine kinase [Arabidopsis thaliana]
AT5G23140	-0.668649541415276	0.291862476590092	0.021964878623442	0.159808984940644	Down	72.29	70.94	53.45	37.64	AT5G23140	GO:0004176,ATP-dependent peptidase activity; GO:0004252,serine-type endopeptidase activity; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0006515,protein quality control for misfolded or incompletely synthesized proteins; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0008270,zinc ion binding; GO:0009368,endopeptidase Clp complex; GO:0009532,plastid stroma; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009840,chloroplastic endopeptidase Clp complex; GO:0016787,hydrolase activity; GO:0050897,cobalt ion binding; GO:0051117,ATPase binding; 	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; K01358; 	NP_568427.1 nuclear-encoded CLP protease P7 [Arabidopsis thaliana]
AT5G23170	-2.39390173464552	1.13839566238773	0.0354768547074473	1	Down	5.25	4.27	0.99	0.85	AT5G23170	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004714,transmembrane receptor protein tyrosine kinase activity; GO:0005524,ATP binding; GO:0005886,plasma membrane; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0018108,peptidyl-tyrosine phosphorylation; GO:0106310,protein serine kinase activity; 	--	NP_197708.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT5G23240	0.630959192672125	0.270087949918203	0.0194847314292421	0.146845743244076	Up	30.50	23.58	40.55	44.68	AT5G23240	GO:0009507,chloroplast; GO:0009536,plastid; 	--	NP_197715.1 DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]
AT5G23420	0.669849115922927	0.202311438178495	0.000929698689161546	0.0138450326999387	Up	91.50	85.73	155.55	130.53	AT5G23420	GO:0000741,karyogamy; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0010197,polar nucleus fusion; 	--	KAG7603202.1 High mobility group box domain [Arabidopsis thaliana x Arabidopsis arenosa]
AT5G23460	2.18921209881246	1.00350210504147	0.0291411349145367	1	Up	3.49	3.83	22.09	11.62	AT5G23460	--	--	NP_568433.1 hypothetical protein AT5G23460 [Arabidopsis thaliana]
AT5G23740	0.854336994579869	0.207057076999365	3.68976258455892e-05	0.000945692249203584	Up	125.93	167.92	283.32	255.77	AT5G23740	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0019843,rRNA binding; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S11e, RPS11; small subunit ribosomal protein S11e; K02949; 	NP_197763.1 ribosomal protein S11-beta [Arabidopsis thaliana]
AT5G23850	0.948679340924783	0.322451390517361	0.00326010618891424	0.037189630838902	Up	13.52	12.65	27.55	23.70	AT5G23850	GO:0003674,molecular_function; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0016020,membrane; GO:0016740,transferase activity; 	--	NP_197774.1 O-glucosyltransferase rumi-like protein (DUF821) [Arabidopsis thaliana]
AT5G23960	-0.981063638262676	0.420577879483839	0.0196661917449387	0.147822372483919	Down	14.79	14.40	7.71	7.30	AT5G23960	GO:0000287,magnesium ion binding; GO:0005737,cytoplasm; GO:0008299,isoprenoid biosynthetic process; GO:0010333,terpene synthase activity; GO:0016102,diterpenoid biosynthetic process; GO:0016106,sesquiterpenoid biosynthetic process; GO:0016114,terpenoid biosynthetic process; GO:0016829,lyase activity; GO:0046872,metal ion binding; GO:0051762,sesquiterpene biosynthetic process; GO:0080016,(-)-E-beta-caryophyllene synthase activity; GO:0080017,alpha-humulene synthase activity; GO:0080027,response to herbivore; 	TPS21; alpha-humulene/beta-caryophyllene synthase [EC:4.2.3.104 4.2.3.57]; K14184; 	NP_197784.2 terpene synthase 21 [Arabidopsis thaliana]
AT5G24150	-0.673390262951902	0.214458890967182	0.00168976488711792	0.0221254163792163	Down	60.12	59.27	36.99	39.16	AT5G24150	GO:0004506,squalene monooxygenase activity; GO:0005783,endoplasmic reticulum; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016126,sterol biosynthetic process; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; 	SQLE, ERG1; squalene monooxygenase [EC:1.14.14.17]; K00511; 	NP_197803.1 FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]
AT5G24280	1.6159623846212	0.229169765661057	1.77155954576006e-12	2.24246899644424e-10	Up	7.72	8.27	28.42	21.25	AT5G24280	GO:0000724,double-strand break repair via homologous recombination; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006974,cellular response to DNA damage stimulus; 	--	NP_001330245.1 gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]
AT5G24460	1.65369376085306	0.70373368572582	0.0187791741369373	1	Up	2.85	4.28	13.08	9.61	AT5G24460	--	--	NP_197834.1 RING-H2 zinc finger protein [Arabidopsis thaliana]
AT5G24490	-0.689347971234848	0.191358866764452	0.000315313061278114	0.00566878047123914	Down	130.41	148.34	92.10	83.30	AT5G24490	GO:0003729,mRNA binding; GO:0005840,ribosome; GO:0006417,regulation of translation; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0022627,cytosolic small ribosomal subunit; GO:0043022,ribosome binding; GO:0043024,ribosomal small subunit binding; GO:0044238,primary metabolic process; GO:0045900,negative regulation of translational elongation; 	--	NP_568447.1 30S ribosomal protein [Arabidopsis thaliana]
AT5G24820	-2.05447417259087	0.7596659597244	0.00684187668534261	1	Down	9.38	7.15	1.93	2.13	AT5G24820	GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; 	--	NP_568459.1 Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]
AT5G24910	1.58261210541467	0.597074202686671	0.00803460597151582	0.0757941346590523	Up	2.00	4.54	12.11	7.65	AT5G24910	GO:0004497,monooxygenase activity; GO:0005506,iron ion binding; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016705,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; GO:0020037,heme binding; GO:0046872,metal ion binding; 	--	NP_568463.1 cytochrome P450, family 714, subfamily A, polypeptide 1 [Arabidopsis thaliana]
AT5G25460	-0.606525581822224	0.105800953474988	9.88418623854961e-09	5.86666652101473e-07	Down	707.09	732.85	514.99	445.15	AT5G25460	GO:0005576,extracellular region; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0010015,root morphogenesis; 	--	NP_197928.1 transmembrane protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]
AT5G25760	0.978943671916988	0.23663845637693	3.52068046366856e-05	0.000907984223530322	Up	105.28	114.08	260.56	177.55	AT5G25760	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005777,peroxisome; GO:0005778,peroxisomal membrane; GO:0006635,fatty acid beta-oxidation; GO:0007031,peroxisome organization; GO:0015031,protein transport; GO:0016020,membrane; GO:0016558,protein import into peroxisome matrix; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0061631,ubiquitin conjugating enzyme activity; 	--	NP_001031939.1 peroxin4 [Arabidopsis thaliana]
AT5G25800	1.23923987127283	0.571010042594523	0.0299872059020894	0.199458295814599	Up	3.70	3.01	8.49	7.61	AT5G25800	GO:0003676,nucleic acid binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0005634,nucleus; GO:0016740,transferase activity; GO:0016787,hydrolase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis; 	REX1, REXO1, RNH70; RNA exonuclease 1 [EC:3.1.-.-]; K14570; 	NP_197952.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]
AT5G25950	-5.21044735783537	2.06773302307901	0.0117393515124872	1	Down	2.16	1.78	0.00	0.00	AT5G25950	GO:0003674,molecular_function; 	--	NP_197967.2 AslB, putative (DUF239) [Arabidopsis thaliana]
AT5G26000	0.726249069558803	0.0741306538457045	1.16117686010477e-22	5.33496257392583e-20	Up	1894.87	1932.56	3224.80	3209.15	AT5G26000	GO:0000325,plant-type vacuole; GO:0002213,defense response to insect; GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005773,vacuole; GO:0005777,peroxisome; GO:0005975,carbohydrate metabolic process; GO:0006952,defense response; GO:0008152,metabolic process; GO:0008422,beta-glucosidase activity; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009625,response to insect; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0010119,regulation of stomatal movement; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0019137,thioglucosidase activity; GO:0019762,glucosinolate catabolic process; GO:0022626,cytosolic ribosome; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0099503,secretory vesicle; GO:0102483,scopolin beta-glucosidase activity; GO:0102799,glucosinolate glucohydrolase activity; 	E3.2.1.147; myrosinase [EC:3.2.1.147]; K01237; 	NP_851077.1 thioglucoside glucohydrolase 1 [Arabidopsis thaliana]
AT5G26730	-1.28480673207124	0.330736444734589	0.000102462868987693	0.00219525369566897	Down	74.90	51.37	23.83	29.03	AT5G26730	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_850872.1 Fasciclin-like arabinogalactan family protein [Arabidopsis thaliana]
AT5G27120	1.020921189118	0.175425968586646	5.89640411961188e-09	3.71293873623276e-07	Up	48.70	57.06	111.22	106.69	AT5G27120	GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009506,plasmodesma; GO:0030515,snoRNA binding; GO:0031428,box C/D RNP complex; GO:0032040,small-subunit processome; GO:0042254,ribosome biogenesis; 	NOP58; nucleolar protein 58; K14565; 	NP_198064.1 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]
AT5G27350	1.20250087280449	0.399270255051702	0.00259749243678143	0.0310722214833883	Up	7.23	11.57	22.26	21.61	AT5G27350	GO:0008643,carbohydrate transport; GO:0009624,response to nematode; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_568493.1 Major facilitator superfamily protein [Arabidopsis thaliana]
AT5G27430	-1.21264023140713	0.607445819021932	0.0459019688042558	0.262523708168185	Down	21.85	34.74	16.74	7.75	AT5G27430	GO:0005783,endoplasmic reticulum; GO:0005787,signal peptidase complex; GO:0005789,endoplasmic reticulum membrane; GO:0006465,signal peptide processing; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0031090,organelle membrane; GO:0045047,protein targeting to ER; 	SPCS3, SPC3; signal peptidase complex subunit 3 [EC:3.4.-.-]; K12948; 	NP_198095.1 Signal peptidase subunit [Arabidopsis thaliana]
AT5G27495	-5.82785563618885	1.87129683070496	0.00184356558889208	1	Down	15.43	16.96	0.00	0.00	AT5G27495	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001031952.1 Defensin-like (DEFL) family protein [Arabidopsis thaliana]
AT5G27700	0.638110018355124	0.21539147723186	0.00305093061626562	0.0352719424928006	Up	223.00	247.16	360.49	383.29	AT5G27700	GO:0000447,endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000461,endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003735,structural constituent of ribosome; GO:0005634,nucleus; GO:0005829,cytosol; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S21e, RPS21; small subunit ribosomal protein S21e; K02971; 	NP_198122.4 Ribosomal protein S21e [Arabidopsis thaliana]
AT5G27770	0.667118101639852	0.162348646549696	3.97084609079979e-05	0.000999155086336133	Up	436.09	382.48	581.31	741.53	AT5G27770	GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005730,nucleolus; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-L22e, RPL22; large subunit ribosomal protein L22e; K02891; 	NP_198129.1 Ribosomal L22e protein family [Arabidopsis thaliana]
AT5G27870	-1.56946638343343	0.463479883681988	0.00070850553528566	0.0111112656955988	Down	10.44	11.94	4.45	3.16	AT5G27870	GO:0004857,enzyme inhibitor activity; GO:0016020,membrane; GO:0016787,hydrolase activity; GO:0030599,pectinesterase activity; GO:0042545,cell wall modification; GO:0043086,negative regulation of catalytic activity; GO:0045330,aspartyl esterase activity; GO:0045490,pectin catabolic process; GO:0046910,pectinesterase inhibitor activity; 	E3.1.1.11; pectinesterase [EC:3.1.1.11]; K01051; 	NP_198139.1 Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]
AT5G27930	0.596885388039667	0.233612165082021	0.010617956307353	0.093814635322446	Up	39.83	46.37	62.46	70.12	AT5G27930	GO:0000226,microtubule cytoskeleton organization; GO:0004721,phosphoprotein phosphatase activity; GO:0004722,protein serine/threonine phosphatase activity; GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0006470,protein dephosphorylation; GO:0009819,drought recovery; GO:0016787,hydrolase activity; GO:0017018,myosin phosphatase activity; GO:0035970,peptidyl-threonine dephosphorylation; GO:0045926,negative regulation of growth; GO:0046872,metal ion binding; 	--	NP_568503.1 Protein phosphatase 2C family protein [Arabidopsis thaliana]
AT5G28060	0.646543452721442	0.143890422736515	7.0126471390711e-06	0.000221353403969916	Up	393.40	361.92	598.51	603.24	AT5G28060	GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S24e, RPS24; small subunit ribosomal protein S24e; K02974; 	NP_198158.1 Ribosomal protein S24e family protein [Arabidopsis thaliana]
AT5G28150	1.22885637744165	0.613251445171283	0.0450874468321782	0.25929985069688	Up	4.85	6.81	12.80	14.96	AT5G28150	--	--	NP_198167.1 hypothetical protein (DUF868) [Arabidopsis thaliana]
AT5G28500	-0.866752558731228	0.237058772065875	0.000255904730922706	0.00478087076369905	Down	61.76	59.00	33.10	34.24	AT5G28500	GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0110102,ribulose bisphosphate carboxylase complex assembly; 	--	NP_198202.1 rubisco accumulation factor-like protein [Arabidopsis thaliana]
AT5G30490	0.673698523611129	0.310246769148834	0.0298939656050314	0.199458295814599	Up	33.94	39.11	57.43	61.01	AT5G30490	GO:0003674,molecular_function; GO:0005634,nucleus; GO:0006338,chromatin remodeling; 	--	NP_001078630.1 craniofacial development-like protein [Arabidopsis thaliana]
AT5G30510	-0.839566331583144	0.121496310400015	4.83899923437226e-12	5.61007341143812e-10	Down	336.36	367.01	199.34	200.09	AT5G30510	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0022627,cytosolic small ribosomal subunit; GO:1990904,ribonucleoprotein complex; 	RP-S1, rpsA; small subunit ribosomal protein S1; K02945; 	NP_850903.1 ribosomal protein S1 [Arabidopsis thaliana]
AT5G35480	3.36255972431326	1.22660519553835	0.00611864454261836	1	Up	4.00	4.40	57.68	29.66	AT5G35480	GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_001331310.1 hypothetical protein AT5G35480 [Arabidopsis thaliana]
AT5G35660	2.81823719092093	1.02128555140865	0.0057889937129095	1	Up	1.59	0.25	6.21	7.15	AT5G35660	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_001154749.1 Glycine-rich protein family [Arabidopsis thaliana]
AT5G35910	0.598502845623995	0.242171646607292	0.0134585437641584	0.112049151271399	Up	16.77	22.37	30.61	29.55	AT5G35910	GO:0000166,nucleotide binding; GO:0000175,3'-5'-exoribonuclease activity; GO:0000176,nuclear exosome (RNase complex); GO:0000467,exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003676,nucleic acid binding; GO:0003727,single-stranded RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0006139,nucleobase-containing compound metabolic process; GO:0006364,rRNA processing; GO:0008408,3'-5' exonuclease activity; GO:0016787,hydrolase activity; GO:0031047,gene silencing by RNA; GO:0043633,polyadenylation-dependent RNA catabolic process; GO:0044237,cellular metabolic process; GO:0071035,nuclear polyadenylation-dependent rRNA catabolic process; GO:0071036,nuclear polyadenylation-dependent snoRNA catabolic process; GO:0071037,nuclear polyadenylation-dependent snRNA catabolic process; GO:0071038,nuclear polyadenylation-dependent tRNA catabolic process; GO:0071039,nuclear polyadenylation-dependent CUT catabolic process; GO:0071040,nuclear polyadenylation-dependent antisense transcript catabolic process; GO:0071044,histone mRNA catabolic process; GO:0071051,polyadenylation-dependent snoRNA 3'-end processing; GO:0080188,gene silencing by RNA-directed DNA methylation; GO:1902466,positive regulation of histone H3-K27 trimethylation; 	RRP6, EXOSC10; exosome complex exonuclease RRP6 [EC:3.1.13.-]; K12591; 	NP_198440.2 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein [Arabidopsis thaliana]
AT5G35926	5.14423615162516	2.41957510668171	0.0334957074790372	1	Up	0.00	0.00	1.81	0.67	AT5G35926	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_001318678.1 Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]
AT5G36210	0.585518457971465	0.222010305961555	0.00835570390707351	0.0778171974228581	Up	28.31	27.48	37.39	47.87	AT5G36210	GO:0006508,proteolysis; GO:0008236,serine-type peptidase activity; GO:0009507,chloroplast; GO:0009536,plastid; 	--	NP_198470.3 alpha/beta-Hydrolases superfamily protein [Arabidopsis thaliana]
AT5G36930	-1.68569151483767	0.83451969265062	0.0433881438430017	1	Down	1.50	2.87	0.66	0.73	AT5G36930	GO:0006952,defense response; GO:0007165,signal transduction; GO:0016020,membrane; GO:0043531,ADP binding; 	--	NP_001330640.1 Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]
AT5G37320	3.03524560792948	1.38497078138054	0.0284113428562954	1	Up	0.64	0.00	2.78	2.68	AT5G37320	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_198548.1 hypothetical protein (DUF674) [Arabidopsis thaliana]
AT5G38050	2.36648888603583	0.712215348208751	0.000891458243216217	1	Up	3.32	2.44	20.34	9.74	AT5G38050	GO:0003711,transcription elongation factor activity; GO:0003746,translation elongation factor activity; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0006368,transcription elongation by RNA polymerase II promoter; GO:0006414,translational elongation; GO:0008023,transcription elongation factor complex; GO:0032783,super elongation complex; 	--	NP_198621.1 RNA polymerase II transcription elongation factor [Arabidopsis thaliana]
AT5G38330	-3.21505889148136	1.60491990430378	0.0451502545555345	1	Down	8.89	9.07	1.83	0.00	AT5G38330	GO:0005576,extracellular region; GO:0006952,defense response; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_198649.2 low-molecular-weight cysteine-rich 80 [Arabidopsis thaliana]
AT5G38710	-0.829996326726454	0.392603559563607	0.0345082189760467	0.218740141235493	Down	23.51	17.94	9.64	14.21	AT5G38710	GO:0004657,proline dehydrogenase activity; GO:0005739,mitochondrion; GO:0006560,proline metabolic process; GO:0006562,proline catabolic process; GO:0006970,response to osmotic stress; GO:0009414,response to water deprivation; GO:0010133,proline catabolic process to glutamate; GO:0016491,oxidoreductase activity; GO:0071949,FAD binding; 	PRODH, fadM, putB; proline dehydrogenase [EC:1.5.5.2]; K00318; 	NP_198687.1 Methylenetetrahydrofolate reductase family protein [Arabidopsis thaliana]
AT5G38890	1.20568146586033	0.451116452287199	0.00752521958395449	0.0719740546946457	Up	15.46	17.44	35.74	41.42	AT5G38890	GO:0000176,nuclear exosome (RNase complex); GO:0000178,exosome (RNase complex); GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0005737,cytoplasm; GO:0006396,RNA processing; GO:0009536,plastid; 	CSL4, EXOSC1; exosome complex component CSL4; K07573; 	NP_568559.2 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
AT5G39570	-0.756249767269817	0.118168114895626	1.55602462834244e-10	1.34045038295749e-08	Down	387.05	373.95	222.35	235.78	AT5G39570	GO:0016020,membrane; 	--	NP_001318706.1 transmembrane protein [Arabidopsis thaliana]
AT5G39760	0.839227110170594	0.323918388901491	0.00957365043925214	0.0864637898802863	Up	20.75	28.95	39.96	50.50	AT5G39760	GO:0000976,transcription cis-regulatory region binding; GO:0001173,DNA-templated transcriptional start site selection; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009637,response to blue light; GO:0009739,response to gibberellin; GO:0009740,gibberellic acid mediated signaling pathway; GO:0042803,protein homodimerization activity; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; 	--	NP_568570.1 homeobox protein 23 [Arabidopsis thaliana]
AT5G39850	1.29214108374751	0.328336904610028	8.3053999119554e-05	0.00186073531247668	Up	31.55	27.74	76.69	70.84	AT5G39850	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005840,ribosome; GO:0006412,translation; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0015935,small ribosomal subunit; GO:0019843,rRNA binding; GO:0022627,cytosolic small ribosomal subunit; GO:0042274,ribosomal small subunit biogenesis; GO:1990904,ribonucleoprotein complex; 	RP-S9e, RPS9; small subunit ribosomal protein S9e; K02997; 	NP_198801.1 Ribosomal protein S4 [Arabidopsis thaliana]
AT5G39950	-0.595606752095188	0.239404635962549	0.0128511996117357	0.108522213195086	Down	201.65	192.81	114.16	152.16	AT5G39950	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0015035,protein-disulfide reductase activity; GO:0016671,oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor; GO:0016712,oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen; 	trxA; thioredoxin 1; K03671; 	NP_198811.1 thioredoxin 2 [Arabidopsis thaliana]
AT5G40170	-0.591270328276411	0.242961997157797	0.0149498432492075	0.121025032491283	Down	30.53	27.71	20.28	18.96	AT5G40170	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0009536,plastid; GO:0016020,membrane; 	--	NP_198833.1 receptor like protein 54 [Arabidopsis thaliana]
AT5G40200	0.680934759014299	0.219285319173036	0.00190121128238508	0.0243139442865844	Up	34.37	45.16	72.46	56.82	AT5G40200	GO:0004252,serine-type endopeptidase activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity; GO:0043231,intracellular membrane-bounded organelle; 	--	NP_568577.1 DegP protease 9 [Arabidopsis thaliana]
AT5G40260	-1.80834500737377	0.550300443590563	0.00101583156658965	0.0148776748329925	Down	22.01	28.81	6.99	7.79	AT5G40260	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0009555,pollen development; GO:0010208,pollen wall assembly; GO:0010584,pollen exine formation; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; GO:0051260,protein homooligomerization; GO:0052543,callose deposition in cell wall; 	--	NP_568579.1 Nodulin MtN3 family protein [Arabidopsis thaliana]
AT5G40500	0.941344504595693	0.410525061946573	0.0218465272063575	0.159306378262739	Up	34.01	34.61	70.76	62.97	AT5G40500	--	--	NP_198866.2 hypothetical protein AT5G40500 [Arabidopsis thaliana]
AT5G40850	1.44603183617877	0.441984799355326	0.0010691135721508	0.0154753253938514	Up	6.34	7.99	20.94	18.64	AT5G40850	GO:0004851,uroporphyrin-III C-methyltransferase activity; GO:0006779,porphyrin-containing compound biosynthetic process; GO:0008168,methyltransferase activity; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016740,transferase activity; GO:0019354,siroheme biosynthetic process; GO:0032259,methylation; GO:0090352,regulation of nitrate assimilation; GO:1900058,regulation of sulfate assimilation; GO:1902326,positive regulation of chlorophyll biosynthetic process; 	cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]; K02303; 	NP_198901.1 urophorphyrin methylase 1 [Arabidopsis thaliana]
AT5G40880	1.02547350265497	0.522394927851391	0.0496434472697035	0.275291445409331	Up	4.62	6.17	10.70	11.62	AT5G40880	GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005634,nucleus; GO:0046872,metal ion binding; 	--	NP_198904.1 WD-40 repeat family protein / zfwd3 protein (ZFWD3) [Arabidopsis thaliana]
AT5G41010	1.00700488080126	0.336136810219837	0.00273709278355957	0.0323676224786048	Up	150.19	115.55	235.78	308.67	AT5G41010	GO:0000418,RNA polymerase IV complex; GO:0000428,DNA-directed RNA polymerase complex; GO:0003677,DNA binding; GO:0003899,DNA-directed 5'-3' RNA polymerase activity; GO:0005634,nucleus; GO:0005665,RNA polymerase II, core complex; GO:0005666,RNA polymerase III complex; GO:0005736,RNA polymerase I complex; GO:0006351,DNA-templated transcription; GO:0008270,zinc ion binding; GO:0046872,metal ion binding; 	RPB12, POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4; K03009; 	NP_198917.1 DNA directed RNA polymerase, 7 kDa subunit [Arabidopsis thaliana]
AT5G41080	0.816792272831625	0.346551093108753	0.0184273493183199	0.14101867260565	Up	16.95	16.16	29.42	29.88	AT5G41080	GO:0006071,glycerol metabolic process; GO:0006629,lipid metabolic process; GO:0008081,phosphoric diester hydrolase activity; GO:0008889,glycerophosphodiester phosphodiesterase activity; GO:0016787,hydrolase activity; GO:0046475,glycerophospholipid catabolic process; GO:0071456,cellular response to hypoxia; 	GDE1; glycerophosphodiester phosphodiesterase [EC:3.1.4.46]; K18696; 	NP_198924.1 PLC-like phosphodiesterases superfamily protein [Arabidopsis thaliana]
AT5G41130	-1.00260880038463	0.35847608500939	0.00516012741850331	0.0530334553658107	Down	20.07	17.54	6.67	12.58	AT5G41130	GO:0004144,diacylglycerol O-acyltransferase activity; GO:0005575,cellular_component; GO:0008374,O-acyltransferase activity; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0044249,cellular biosynthetic process; GO:1901576,organic substance biosynthetic process; 	--	NP_198929.2 Esterase/lipase/thioesterase family protein [Arabidopsis thaliana]
AT5G41190	0.772456182137993	0.249869868465585	0.0019919232524873	0.0252140897419438	Up	24.35	20.36	37.87	39.81	AT5G41190	GO:0000469,cleavage involved in rRNA processing; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004521,endoribonuclease activity; GO:0005634,nucleus; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0006364,rRNA processing; GO:0009553,embryo sac development; GO:0009555,pollen development; GO:0016787,hydrolase activity; GO:0030490,maturation of SSU-rRNA; GO:0030688,preribosome, small subunit precursor; GO:0042254,ribosome biogenesis; GO:0042274,ribosomal small subunit biogenesis; GO:0046872,metal ion binding; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; 	NOB1; RNA-binding protein NOB1; K11883; 	NP_198935.1 RNA-binding NOB1-like protein [Arabidopsis thaliana]
AT5G41270	2.32592329158412	1.17257655268067	0.0473004071901102	1	Up	0.90	1.33	3.04	8.37	AT5G41270	GO:0006396,RNA processing; GO:0034470,ncRNA processing; GO:1902555,endoribonuclease complex; GO:1990904,ribonucleoprotein complex; 	--	NP_198943.3 RNase P Rpr2/Rpp21 subunit domain protein [Arabidopsis thaliana]
AT5G41460	0.622174488427144	0.227717554548278	0.00629090918800832	0.0624309827817945	Up	35.70	36.95	49.71	64.18	AT5G41460	GO:0008375,acetylglucosaminyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; 	--	NP_198961.1 transferring glycosyl group transferase (DUF604) [Arabidopsis thaliana]
AT5G41670	-0.705882066264663	0.146021478252447	1.33751009946239e-06	5.08951312387453e-05	Down	158.91	156.90	98.65	98.08	AT5G41670	GO:0004616,phosphogluconate dehydrogenase (decarboxylating) activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006098,pentose-phosphate shunt; GO:0008114,phosphogluconate 2-dehydrogenase activity; GO:0009051,pentose-phosphate shunt, oxidative branch; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009744,response to sucrose; GO:0009749,response to glucose; GO:0009750,response to fructose; GO:0016491,oxidoreductase activity; GO:0019521,D-gluconate metabolic process; GO:0046177,D-gluconate catabolic process; GO:0050661,NADP binding; GO:0099503,secretory vesicle; 	PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]; K00033; 	NP_001318724.1 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]
AT5G41685	0.617420245087568	0.282131773175057	0.0286396856769908	0.194033479422759	Up	135.64	170.54	219.05	258.77	AT5G41685	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0005741,mitochondrial outer membrane; GO:0005742,mitochondrial outer membrane translocase complex; GO:0015031,protein transport; GO:0016020,membrane; GO:0030150,protein import into mitochondrial matrix; 	TOM7; mitochondrial import receptor subunit TOM7; K17771; 	NP_568593.1 Mitochondrial outer membrane translocase complex, subunit Tom7 [Arabidopsis thaliana]
AT5G41790	0.693725868398727	0.225044413110923	0.00205188639255746	0.0258938460830878	Up	10.63	11.03	16.87	18.77	AT5G41790	GO:0000325,plant-type vacuole; GO:0003779,actin binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0006970,response to osmotic stress; GO:0009536,plastid; GO:0009737,response to abscisic acid; GO:0009738,abscisic acid-activated signaling pathway; GO:0009789,positive regulation of abscisic acid-activated signaling pathway; GO:0016020,membrane; GO:0042306,regulation of protein import into nucleus; GO:0071215,cellular response to abscisic acid stimulus; GO:0110165,cellular anatomical entity; 	--	NP_001330520.1 COP1-interactive protein 1 [Arabidopsis thaliana]
AT5G41860	1.10299499455767	0.385436941864428	0.00421409704359242	0.0457757213885849	Up	26.71	22.24	47.21	59.94	AT5G41860	GO:0005575,cellular_component; GO:0016020,membrane; 	--	NP_199001.1 transmembrane protein [Arabidopsis thaliana]
AT5G42020	-0.585864873378648	0.155301955741698	0.000161669017546728	0.00322170069588076	Down	122.28	113.94	89.36	70.18	AT5G42020	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016020,membrane; GO:0016592,mediator complex; GO:0016887,ATP hydrolysis activity; GO:0030433,ubiquitin-dependent ERAD pathway; GO:0030968,endoplasmic reticulum unfolded protein response; GO:0031072,heat shock protein binding; GO:0034620,cellular response to unfolded protein; GO:0034663,endoplasmic reticulum chaperone complex; GO:0034976,response to endoplasmic reticulum stress; GO:0042026,protein refolding; GO:0044183,protein folding chaperone; GO:0051082,unfolded protein binding; GO:0051085,chaperone cofactor-dependent protein refolding; GO:0051787,misfolded protein binding; GO:0099503,secretory vesicle; GO:0140662,ATP-dependent protein folding chaperone; 	HSPA5, BIP; endoplasmic reticulum chaperone BiP [EC:3.6.4.10]; K09490; 	NP_851119.1 Heat shock protein 70 (Hsp 70) family protein [Arabidopsis thaliana]
AT5G42030	0.682941332181997	0.239994094776577	0.00443196408469236	0.0474771282129609	Up	41.22	46.49	78.11	64.67	AT5G42030	GO:0003674,molecular_function; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0110165,cellular anatomical entity; 	--	NP_001330354.1 ABL interactor-like protein 4 [Arabidopsis thaliana]
AT5G42060	1.36803432284266	0.268455537904878	3.47008144046139e-07	1.45919865318385e-05	Up	110.01	86.76	247.95	268.99	AT5G42060	GO:0003713,transcription coactivator activity; GO:0005634,nucleus; GO:0005667,transcription regulator complex; GO:0016592,mediator complex; GO:0060261,positive regulation of transcription initiation by RNA polymerase II; 	--	NP_199021.1 DEK, chromatin associated protein [Arabidopsis thaliana]
AT5G42890	-0.95466431505522	0.232195778680287	3.9316016386903e-05	0.000995001564599474	Down	273.34	226.36	121.55	141.11	AT5G42890	GO:0005777,peroxisome; GO:0005829,cytosol; GO:0006635,fatty acid beta-oxidation; GO:0006869,lipid transport; GO:0009646,response to absence of light; GO:0009744,response to sucrose; GO:0009845,seed germination; GO:0032365,intracellular lipid transport; GO:0046487,glyoxylate metabolic process; GO:0048317,seed morphogenesis; 	--	NP_199103.1 sterol carrier protein 2 [Arabidopsis thaliana]
AT5G43030	-2.44920816169135	0.621686767535038	8.16115728698976e-05	0.00184612989307559	Down	8.85	11.55	1.99	1.79	AT5G43030	GO:0003674,molecular_function; 	--	NP_199117.1 Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]
AT5G43260	0.706615891079352	0.315485005063895	0.0251054381713236	0.176249553206151	Up	79.69	85.84	140.03	134.28	AT5G43260	GO:0016020,membrane; 	--	NP_568623.1 chaperone protein dnaJ-like protein [Arabidopsis thaliana]
AT5G43330	-0.620655705325023	0.253829002199573	0.0144782860081075	0.118315637635424	Down	87.01	62.12	50.33	48.20	AT5G43330	GO:0003824,catalytic activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006099,tricarboxylic acid cycle; GO:0006107,oxaloacetate metabolic process; GO:0006108,malate metabolic process; GO:0006734,NADH metabolic process; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0016491,oxidoreductase activity; GO:0016615,malate dehydrogenase activity; GO:0016616,oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0019752,carboxylic acid metabolic process; GO:0030060,L-malate dehydrogenase activity; 	MDH1; malate dehydrogenase [EC:1.1.1.37]; K00025; 	NP_199147.1 Lactate/malate dehydrogenase family protein [Arabidopsis thaliana]
AT5G43750	-1.27354304085316	0.427437780534213	0.00288736485306151	0.0338222483496016	Down	36.30	47.15	17.43	17.65	AT5G43750	GO:0006979,response to oxidative stress; GO:0009507,chloroplast; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0016020,membrane; GO:0031969,chloroplast membrane; 	--	NP_568629.1 NAD(P)H dehydrogenase 18 [Arabidopsis thaliana]
AT5G43780	-0.765493696943912	0.20581908567429	0.000199811124162267	0.00384884626588963	Down	77.10	72.32	43.56	45.84	AT5G43780	GO:0000103,sulfate assimilation; GO:0000166,nucleotide binding; GO:0004020,adenylylsulfate kinase activity; GO:0004781,sulfate adenylyltransferase (ATP) activity; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016740,transferase activity; GO:0016779,nucleotidyltransferase activity; GO:0070814,hydrogen sulfide biosynthetic process; 	PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25]; K13811; 	NP_199191.1 Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]
AT5G44005	1.48499397497417	0.605968151370706	0.0142612834582712	0.117082211316912	Up	18.91	13.55	49.73	42.62	AT5G44005	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_974881.1 hypothetical protein AT5G44005 [Arabidopsis thaliana]
AT5G44240	-0.652357825486479	0.315157834863455	0.0384579585308725	0.233743741095283	Down	12.86	11.57	6.99	8.86	AT5G44240	GO:0000166,nucleotide binding; GO:0000287,magnesium ion binding; GO:0005215,transporter activity; GO:0005524,ATP binding; GO:0005768,endosome; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0015914,phospholipid transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0016887,ATP hydrolysis activity; GO:0034204,lipid translocation; GO:0045332,phospholipid translocation; GO:0046872,metal ion binding; GO:0140326,ATPase-coupled intramembrane lipid transporter activity; 	E7.6.2.1; phospholipid-translocating ATPase [EC:7.6.2.1]; K01530; 	NP_001190471.1 aminophospholipid ATPase 2 [Arabidopsis thaliana]
AT5G44400	-1.37576768672063	0.291041707549205	2.27809104053706e-06	8.14401134232339e-05	Down	34.84	42.92	14.64	15.86	AT5G44400	GO:0000166,nucleotide binding; GO:0005576,extracellular region; GO:0009506,plasmodesma; GO:0016491,oxidoreductase activity; GO:0050660,flavin adenine dinucleotide binding; GO:0071949,FAD binding; 	--	NP_199253.1 FAD-binding Berberine family protein [Arabidopsis thaliana]
AT5G44530	-1.24662397690934	0.634514491370921	0.0494501826579805	0.274587965923119	Down	5.50	3.51	2.04	1.81	AT5G44530	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016787,hydrolase activity; 	--	NP_568634.1 Subtilase family protein [Arabidopsis thaliana]
AT5G44860	-1.00895938665265	0.375415400292357	0.00719715926458132	0.0692098919977762	Down	29.83	37.59	15.72	18.41	AT5G44860	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_001330364.1 polyadenylate-binding protein 1-B-binding protein [Arabidopsis thaliana]
AT5G45100	0.793377120179848	0.331447463293171	0.0166805748742941	0.131965900073736	Up	29.39	29.97	39.27	65.68	AT5G45100	GO:0004842,ubiquitin-protein transferase activity; GO:0006952,defense response; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0043067,regulation of programmed cell death; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; 	--	NP_199323.2 SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]
AT5G45130	-1.06556724944706	0.368812902609498	0.00386246617197638	0.0428184922818294	Down	61.56	46.78	22.29	30.61	AT5G45130	GO:0000166,nucleotide binding; GO:0003924,GTPase activity; GO:0005515,protein binding; GO:0005525,GTP binding; GO:0005768,endosome; GO:0005774,vacuolar membrane; GO:0005783,endoplasmic reticulum; GO:0006886,intracellular protein transport; GO:0007034,vacuolar transport; GO:0010008,endosome membrane; GO:0012505,endomembrane system; GO:0015031,protein transport; GO:0016020,membrane; GO:0030139,endocytic vesicle; 	--	NP_199326.1 Ras small GTP-binding family protein [Arabidopsis thaliana]
AT5G45280	0.637241352112753	0.183089423606297	0.000500492975013821	0.00840218838176823	Up	118.74	91.75	146.92	186.29	AT5G45280	GO:0005576,extracellular region; GO:0005886,plasma membrane; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0016787,hydrolase activity; GO:0052793,pectin acetylesterase activity; GO:0071555,cell wall organization; 	--	NP_199341.1 Pectinacetylesterase family protein [Arabidopsis thaliana]
AT5G45430	0.790852020853797	0.379481213600764	0.0371570101263323	0.229003528264085	Up	12.96	10.13	17.32	23.43	AT5G45430	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0035556,intracellular signal transduction; 	--	NP_001190473.1 Protein kinase superfamily protein [Arabidopsis thaliana]
AT5G45590	1.34720420261753	0.654607853078335	0.0395870186636898	1	Up	8.08	8.39	16.16	26.59	AT5G45590	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:1990904,ribonucleoprotein complex; 	--	NP_568647.1 Ribosomal protein L35 [Arabidopsis thaliana]
AT5G45600	1.13858087299165	0.524238012598036	0.0298648854803402	0.199458295814599	Up	13.06	6.70	23.83	20.43	AT5G45600	GO:0000812,Swr1 complex; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0006281,DNA repair; GO:0006325,chromatin organization; GO:0006338,chromatin remodeling; GO:0006355,regulation of DNA-templated transcription; GO:0006357,regulation of transcription by RNA polymerase II; GO:0006974,cellular response to DNA damage stimulus; GO:0009908,flower development; GO:0009909,regulation of flower development; GO:0016573,histone acetylation; GO:0030154,cell differentiation; GO:0035267,NuA4 histone acetyltransferase complex; GO:0042393,histone binding; GO:0043229,intracellular organelle; GO:0043981,histone H4-K5 acetylation; GO:0048510,regulation of timing of transition from vegetative to reproductive phase; GO:0090239,regulation of histone H4 acetylation; GO:2000028,regulation of photoperiodism, flowering; 	--	NP_199373.1 YEATS family protein [Arabidopsis thaliana]
AT5G45880	-1.23858177731432	0.513208324952798	0.0158040580224542	0.126229341449482	Down	34.81	33.35	12.21	17.35	AT5G45880	GO:0005615,extracellular space; 	--	NP_568650.1 Pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana]
AT5G46030	0.747425657572102	0.166137872843255	6.83292205665019e-06	0.000217339482340373	Up	268.50	283.04	467.59	473.25	AT5G46030	GO:0000993,RNA polymerase II complex binding; GO:0005634,nucleus; GO:0006368,transcription elongation by RNA polymerase II promoter; GO:0008023,transcription elongation factor complex; GO:0046872,metal ion binding; 	--	VYS69444.1 unnamed protein product [Arabidopsis thaliana]
AT5G46310	3.6804018652838	1.3156763664261	0.00515243421403407	1	Up	0.21	0.46	3.62	5.04	AT5G46310	GO:0003674,molecular_function; GO:0008150,biological_process; 	--	NP_199443.1 WRKY family transcription factor [Arabidopsis thaliana]
AT5G46710	3.46014721720547	0.65741328835231	1.41511322269576e-07	6.45385276747827e-06	Up	1.90	2.79	20.12	32.33	AT5G46710	GO:0003674,molecular_function; 	--	NP_199483.1 PLATZ transcription factor family protein [Arabidopsis thaliana]
AT5G46950	-3.93134222714164	1.9300608499957	0.0416599975759597	1	Down	5.36	5.40	0.64	0.00	AT5G46950	GO:0004857,enzyme inhibitor activity; GO:0009793,embryo development ending in seed dormancy; GO:0030599,pectinesterase activity; GO:0043086,negative regulation of catalytic activity; GO:0046910,pectinesterase inhibitor activity; 	--	NP_568672.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Arabidopsis thaliana]
AT5G47000	1.20159535398265	0.19267191841667	4.47514802676458e-10	3.49145982842859e-08	Up	89.99	64.31	188.03	172.66	AT5G47000	GO:0004601,peroxidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0006979,response to oxidative stress; GO:0009044,xylan 1,4-beta-xylosidase activity; GO:0016491,oxidoreductase activity; GO:0020037,heme binding; GO:0042744,hydrogen peroxide catabolic process; GO:0046872,metal ion binding; GO:0098869,cellular oxidant detoxification; GO:0140825,lactoperoxidase activity; 	E1.11.1.7; peroxidase [EC:1.11.1.7]; K00430; 	NP_568674.1 Peroxidase superfamily protein [Arabidopsis thaliana]
AT5G47120	-0.791365370759918	0.147293899610424	7.75679668124467e-08	3.72957607871474e-06	Down	348.60	316.00	190.49	200.00	AT5G47120	GO:0000038,very long-chain fatty acid metabolic process; GO:0005515,protein binding; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005789,endoplasmic reticulum membrane; GO:0006983,ER overload response; GO:0009414,response to water deprivation; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0042761,very long-chain fatty acid biosynthetic process; GO:0043066,negative regulation of apoptotic process; GO:0043069,negative regulation of programmed cell death; 	--	NP_199523.1 BAX inhibitor 1 [Arabidopsis thaliana]
AT5G47190	-0.878006926273739	0.283095382675521	0.00192573664470585	0.0245667596214086	Down	80.13	89.19	40.59	53.44	AT5G47190	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L19, MRPL19, rplS; large subunit ribosomal protein L19; K02884; 	NP_568677.1 Ribosomal protein L19 family protein [Arabidopsis thaliana]
AT5G47210	0.644950250076545	0.110543761812517	5.40028497264245e-09	3.45312036523864e-07	Up	357.26	407.02	628.12	585.85	AT5G47210	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005886,plasma membrane; GO:0008150,biological_process; GO:0009536,plastid; GO:0048471,perinuclear region of cytoplasm; 	--	NP_199532.1 Hyaluronan / mRNA binding family [Arabidopsis thaliana]
AT5G47250	1.38546184833753	0.691790153203314	0.0452073706063172	1	Up	1.85	1.12	3.47	4.45	AT5G47250	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006952,defense response; GO:0043531,ADP binding; 	--	NP_199536.1 LRR and NB-ARC domains-containing disease resistance protein [Arabidopsis thaliana]
AT5G47600	2.04925836645309	0.346688740950824	3.40148896710841e-09	2.26857369016021e-07	Up	39.64	24.71	122.71	148.99	AT5G47600	GO:0005737,cytoplasm; GO:0008150,biological_process; 	--	NP_199571.2 HSP20-like chaperones superfamily protein [Arabidopsis thaliana]
AT5G47700	1.27892634388509	0.150436387839814	1.87248664378212e-17	5.66541385758957e-15	Up	361.71	457.03	975.84	1042.67	AT5G47700	GO:0002181,cytoplasmic translation; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005654,nucleoplasm; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006414,translational elongation; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0030295,protein kinase activator activity; GO:0032147,activation of protein kinase activity; GO:0043021,ribonucleoprotein complex binding; GO:1990904,ribonucleoprotein complex; 	RP-LP1, RPLP1; large subunit ribosomal protein LP1; K02942; 	CAA0408273.1 unnamed protein product [Arabidopsis thaliana]
AT5G47830	-2.3690181900523	1.14268598097323	0.0381535389798678	1	Down	8.34	9.64	1.90	1.62	AT5G47830	GO:0005515,protein binding; 	--	NP_199594.3 hypothetical protein AT5G47830 [Arabidopsis thaliana]
AT5G47920	2.95708865638283	1.07954221933536	0.00615877476511718	1	Up	1.25	1.37	8.38	12.31	AT5G47920	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0005575,cellular_component; GO:0006414,translational elongation; 	--	NP_199603.1 transcription elongation factor [Arabidopsis thaliana]
AT5G47930	0.742264682461358	0.212480738210672	0.00047704211265095	0.00807327067862897	Up	256.34	252.46	378.47	488.25	AT5G47930	GO:0000028,ribosomal small subunit assembly; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0046872,metal ion binding; GO:1990904,ribonucleoprotein complex; 	RP-S27e, RPS27; small subunit ribosomal protein S27e; K02978; 	NP_199604.1 Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]
AT5G48140	-0.637988196505847	0.261403811040636	0.0146619453464459	0.119344771668413	Down	53.44	61.34	31.81	43.45	AT5G48140	GO:0004650,polygalacturonase activity; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0016829,lyase activity; 	E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]; K01213; 	NP_199625.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT5G48210	-1.3683079011979	0.350209954857405	9.34076468227959e-05	0.00204000327259997	Down	126.16	132.05	54.08	47.27	AT5G48210	GO:0005576,extracellular region; GO:0009567,double fertilization forming a zygote and endosperm; GO:0031982,vesicle; GO:0080155,regulation of double fertilization forming a zygote and endosperm; GO:0110165,cellular anatomical entity; GO:2000008,regulation of protein localization to cell surface; 	--	NP_568693.1 prolamin-like protein (DUF1278) [Arabidopsis thaliana]
AT5G48230	-0.831233691634041	0.177966337591485	3.00123177650668e-06	0.000104874028697367	Down	127.71	118.40	72.09	68.37	AT5G48230	GO:0003985,acetyl-CoA C-acetyltransferase activity; GO:0005737,cytoplasm; GO:0005777,peroxisome; GO:0005886,plasma membrane; GO:0006635,fatty acid beta-oxidation; GO:0008299,isoprenoid biosynthetic process; GO:0009536,plastid; GO:0009846,pollen germination; GO:0009860,pollen tube growth; GO:0016125,sterol metabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0046872,metal ion binding; 	ACAT, atoB; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; K00626; 	NP_568694.2 acetoacetyl-CoA thiolase 2 [Arabidopsis thaliana]
AT5G48485	-1.03571868343592	0.203093353038579	3.4016117152874e-07	1.43527188190953e-05	Down	381.38	411.68	209.68	182.51	AT5G48485	GO:0005504,fatty acid binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005783,endoplasmic reticulum; GO:0006869,lipid transport; GO:0006952,defense response; GO:0008270,zinc ion binding; GO:0008289,lipid binding; GO:0009506,plasmodesma; GO:0009627,systemic acquired resistance; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0043621,protein self-association; GO:0046872,metal ion binding; GO:0048046,apoplast; GO:0070161,anchoring junction; GO:0099503,secretory vesicle; 	--	NP_568699.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT5G48530	-2.067282814301	0.88321507699186	0.0192510535089474	1	Down	25.10	7.88	6.31	1.48	AT5G48530	GO:0008150,biological_process; 	--	NP_199664.2 hypothetical protein AT5G48530 [Arabidopsis thaliana]
AT5G48580	-0.982246460746636	0.261747336481293	0.000174974220558486	0.00343442279434812	Down	132.38	141.84	75.45	65.25	AT5G48580	GO:0000325,plant-type vacuole; GO:0000413,protein peptidyl-prolyl isomerization; GO:0003755,peptidyl-prolyl cis-trans isomerase activity; GO:0005783,endoplasmic reticulum; GO:0005788,endoplasmic reticulum lumen; GO:0005794,Golgi apparatus; GO:0009536,plastid; GO:0009620,response to fungus; GO:0016853,isomerase activity; GO:0034976,response to endoplasmic reticulum stress; GO:0061077,chaperone-mediated protein folding; GO:0071781,endoplasmic reticulum cisternal network; GO:0085035,haustorium; 	--	NP_199669.1 FK506- and rapamycin-binding protein 15 kD-2 [Arabidopsis thaliana]
AT5G48880	-0.788959615333794	0.126710121643232	4.76993208621101e-10	3.6752178589719e-08	Down	253.22	254.88	151.29	147.45	AT5G48880	GO:0003988,acetyl-CoA C-acyltransferase activity; GO:0005777,peroxisome; GO:0006629,lipid metabolic process; GO:0006631,fatty acid metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0006635,fatty acid beta-oxidation; GO:0010124,phenylacetate catabolic process; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0031408,oxylipin biosynthetic process; 	ACAA1; acetyl-CoA acyltransferase 1 [EC:2.3.1.16]; K07513; 	NP_851157.1 peroxisomal 3-keto-acyl-CoA thiolase 2 [Arabidopsis thaliana]
AT5G48900	-0.796579366920533	0.174396106065252	4.93236284891177e-06	0.000162325778350999	Down	130.04	121.98	76.69	70.57	AT5G48900	GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; 	pel; pectate lyase [EC:4.2.2.2]; K01728; 	NP_568705.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT5G48905	-5.4960274049905	1.98795141919126	0.00569806050166104	1	Down	7.35	17.17	0.00	0.00	AT5G48905	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001032038.1 low-molecular-weight cysteine-rich 12 [Arabidopsis thaliana]
AT5G49070	-2.09458385889207	0.957503871853458	0.028702681828946	1	Down	3.69	5.54	0.97	1.24	AT5G49070	GO:0006633,fatty acid biosynthetic process; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0016747,acyltransferase activity, transferring groups other than amino-acyl groups; GO:0102756,very-long-chain 3-ketoacyl-CoA synthase activity; 	KCS; 3-ketoacyl-CoA synthase [EC:2.3.1.199]; K15397; 	NP_001190498.1 3-ketoacyl-CoA synthase 21 [Arabidopsis thaliana]
AT5G49300	2.20639926360453	1.07297343786463	0.0397496597177309	1	Up	3.90	1.23	12.86	11.36	AT5G49300	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0043565,sequence-specific DNA binding; GO:0046872,metal ion binding; 	--	NP_199741.1 GATA transcription factor 16 [Arabidopsis thaliana]
AT5G49730	-1.27683509433622	0.447517216201189	0.00432877726443081	0.0466132655948474	Down	10.08	10.96	4.54	4.28	AT5G49730	GO:0000293,ferric-chelate reductase activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009416,response to light stimulus; GO:0009536,plastid; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; 	E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7]; K00521; 	NP_199784.2 ferric reduction oxidase 6 [Arabidopsis thaliana]
AT5G49740	-0.911967128758208	0.438335456344676	0.037477561071406	0.229698194214818	Down	10.48	8.64	4.94	5.41	AT5G49740	GO:0000293,ferric-chelate reductase activity; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009767,photosynthetic electron transport chain; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0031969,chloroplast membrane; GO:0046872,metal ion binding; GO:0140618,ferric-chelate reductase (NADH) activity; 	E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7]; K00521; 	NP_199785.2 ferric reduction oxidase 7 [Arabidopsis thaliana]
AT5G49910	-0.744338071022804	0.138810532112038	8.21874313336985e-08	3.92128879113281e-06	Down	143.16	128.22	80.26	84.47	AT5G49910	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0006457,protein folding; GO:0006950,response to stress; GO:0009408,response to heat; GO:0009507,chloroplast; GO:0009532,plastid stroma; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0015031,protein transport; GO:0045036,protein targeting to chloroplast; GO:0048046,apoplast; GO:0051082,unfolded protein binding; GO:0140662,ATP-dependent protein folding chaperone; 	HSPA1s; heat shock 70kDa protein 1/2/6/8; K03283; 	NP_199802.1 chloroplast heat shock protein 70-2 [Arabidopsis thaliana]
AT5G49940	0.753922479746341	0.361936538103477	0.0372490399144706	0.229003528264085	Up	24.11	26.14	40.36	45.86	AT5G49940	GO:0005198,structural molecule activity; GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009658,chloroplast organization; GO:0016226,iron-sulfur cluster assembly; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051537,2 iron, 2 sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; GO:0097428,protein maturation by iron-sulfur cluster transfer; 	--	NP_568715.1 NIFU-like protein 2 [Arabidopsis thaliana]
AT5G50361	-3.05365162540569	0.759436340427319	5.7965181040589e-05	0.00140167265264816	Down	63.90	80.63	5.11	13.15	AT5G50361	GO:0003674,molecular_function; 	--	NP_001119408.1 hypothetical protein AT5G50361 [Arabidopsis thaliana]
AT5G50790	-1.95039548744823	0.378780885668365	2.61684697198864e-07	1.14302770026476e-05	Down	43.90	53.28	11.25	14.46	AT5G50790	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008515,sucrose transmembrane transporter activity; GO:0008643,carbohydrate transport; GO:0015770,sucrose transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0034219,carbohydrate transmembrane transport; GO:0048571,long-day photoperiodism; GO:0051119,sugar transmembrane transporter activity; 	--	NP_199892.1 Nodulin MtN3 family protein [Arabidopsis thaliana]
AT5G50950	-0.863171396253289	0.404592156211169	0.0328889917349937	0.211751026966774	Down	27.47	23.87	7.66	21.30	AT5G50950	GO:0003824,catalytic activity; GO:0004333,fumarate hydratase activity; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0006099,tricarboxylic acid cycle; GO:0006106,fumarate metabolic process; GO:0006108,malate metabolic process; GO:0009536,plastid; GO:0009631,cold acclimation; GO:0010109,regulation of photosynthesis; GO:0016829,lyase activity; GO:0042128,nitrate assimilation; GO:0045239,tricarboxylic acid cycle enzyme complex; GO:0051262,protein tetramerization; 	E4.2.1.2B, fumC, FH; fumarate hydratase, class II [EC:4.2.1.2]; K01679; 	NP_199908.1 FUMARASE 2 [Arabidopsis thaliana]
AT5G51105	-3.30420965336555	1.51335513487367	0.0290087944781775	1	Down	8.19	11.77	0.91	1.17	AT5G51105	GO:0005576,extracellular region; GO:0009567,double fertilization forming a zygote and endosperm; GO:0031982,vesicle; GO:0080155,regulation of double fertilization forming a zygote and endosperm; GO:0110165,cellular anatomical entity; GO:2000008,regulation of protein localization to cell surface; 	--	NP_680421.1 ECA1 gametogenesis family protein (DUF1278) [Arabidopsis thaliana]
AT5G51480	-0.898623367243958	0.411824052729839	0.0291053602157692	0.196106809392173	Down	16.20	14.19	6.45	10.24	AT5G51480	GO:0005507,copper ion binding; GO:0005886,plasma membrane; GO:0009506,plasmodesma; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0046872,metal ion binding; 	--	NP_199961.1 SKU5 similar 2 [Arabidopsis thaliana]
AT5G51540	1.09872526625498	0.539525525376605	0.0417036066126481	0.245997736581027	Up	3.87	2.79	6.36	8.18	AT5G51540	GO:0004177,aminopeptidase activity; GO:0004222,metalloendopeptidase activity; GO:0005739,mitochondrion; GO:0006508,proteolysis; GO:0006518,peptide metabolic process; GO:0008233,peptidase activity; GO:0008237,metallopeptidase activity; GO:0009535,chloroplast thylakoid membrane; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; 	--	NP_199967.2 Zincin-like metalloproteases family protein [Arabidopsis thaliana]
AT5G51545	-1.7268976354538	0.530695055241673	0.00113780259774457	0.0161862858085107	Down	42.83	32.30	7.86	15.55	AT5G51545	GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0016020,membrane; GO:0031969,chloroplast membrane; 	--	NP_001032057.1 low psii accumulation2 [Arabidopsis thaliana]
AT5G51600	-0.705825901543421	0.358611724074797	0.0490430077746716	0.273305710442409	Down	13.79	15.76	9.21	9.19	AT5G51600	GO:0000226,microtubule cytoskeleton organization; GO:0000280,nuclear division; GO:0000911,cytokinesis by cell plate formation; GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005819,spindle; GO:0005856,cytoskeleton; GO:0005874,microtubule; GO:0007049,cell cycle; GO:0008017,microtubule binding; GO:0009524,phragmoplast; GO:0009574,preprophase band; GO:0009624,response to nematode; GO:0046785,microtubule polymerization; GO:0051301,cell division; GO:0052096,formation of syncytium involving giant cell for nutrient acquisition; GO:0055028,cortical microtubule; 	--	NP_199973.1 Microtubule associated protein (MAP65/ASE1) family protein [Arabidopsis thaliana]
AT5G51830	-0.585466579749207	0.280999553832476	0.037204372513648	0.229003528264085	Down	51.99	46.91	31.39	35.73	AT5G51830	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0005975,carbohydrate metabolic process; GO:0006000,fructose metabolic process; GO:0006633,fatty acid biosynthetic process; GO:0008865,fructokinase activity; GO:0016051,carbohydrate biosynthetic process; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016740,transferase activity; GO:0016773,phosphotransferase activity, alcohol group as acceptor; GO:0019252,starch biosynthetic process; GO:0046835,carbohydrate phosphorylation; 	E2.7.1.4, scrK; fructokinase [EC:2.7.1.4]; K00847; 	NP_001318782.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]
AT5G51840	-1.42600972640356	0.701242738051133	0.0419973391115227	1	Down	14.92	12.91	6.86	3.53	AT5G51840	GO:0005575,cellular_component; 	--	NP_568766.1 junctophilin-like protein [Arabidopsis thaliana]
AT5G51950	-0.693196494908662	0.152057765795418	5.14539000350868e-06	0.000168858632258003	Down	140.36	124.59	87.95	78.34	AT5G51950	GO:0016614,oxidoreductase activity, acting on CH-OH group of donors; GO:0050660,flavin adenine dinucleotide binding; 	--	NP_200008.1 Glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana]
AT5G52160	-1.71914906876	0.315106311655324	4.87597637588559e-08	2.438971247696e-06	Down	189.20	198.22	54.50	65.59	AT5G52160	GO:0003674,molecular_function; GO:0006508,proteolysis; GO:0008150,biological_process; GO:0008233,peptidase activity; 	--	NP_200029.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT5G52360	-1.63025273944321	0.577499684704755	0.00475839907768979	0.0500236784396117	Down	33.39	48.52	17.12	9.43	AT5G52360	GO:0003779,actin binding; GO:0005737,cytoplasm; GO:0005856,cytoskeleton; GO:0005884,actin filament; GO:0007015,actin filament organization; GO:0009860,pollen tube growth; GO:0015629,actin cytoskeleton; GO:0030042,actin filament depolymerization; GO:0048046,apoplast; GO:0051015,actin filament binding; 	CFL; cofilin; K05765; 	NP_568769.1 actin depolymerizing factor 10 [Arabidopsis thaliana]
AT5G52390	-0.74583998863824	0.199260268150158	0.00018180424242687	0.00354176031024988	Down	220.34	221.16	116.50	151.98	AT5G52390	--	--	NP_200052.1 PAR1 protein [Arabidopsis thaliana]
AT5G52540	-0.689599136585635	0.277594968330694	0.0129845860825434	0.109128584250645	Down	40.06	48.12	32.14	23.16	AT5G52540	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009941,chloroplast envelope; GO:0016020,membrane; 	--	NP_200067.1 keratin-associated protein, putative (DUF819) [Arabidopsis thaliana]
AT5G52650	0.651144141072199	0.138936856406927	2.7775505330102e-06	9.76076894107409e-05	Up	348.83	310.44	545.54	506.11	AT5G52650	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0009505,plant-type cell wall; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S10e, RPS10; small subunit ribosomal protein S10e; K02947; 	NP_200077.1 RNA binding Plectin/S10 domain-containing protein [Arabidopsis thaliana]
AT5G52820	0.677102065356427	0.343458738311314	0.0486756424832268	0.272114170799652	Up	14.83	20.10	33.93	22.58	AT5G52820	GO:0000027,ribosomal large subunit assembly; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0009553,embryo sac development; GO:0080008,Cul4-RING E3 ubiquitin ligase complex; 	--	NP_200094.1 WD-40 repeat family protein / notchless protein [Arabidopsis thaliana]
AT5G52970	-1.01926222514441	0.432949914557087	0.0185612899395268	0.141648815648582	Down	38.35	33.72	15.06	21.30	AT5G52970	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009579,thylakoid; GO:0031977,thylakoid lumen; 	--	NP_001318791.1 thylakoid lumen 15.0 kDa protein [Arabidopsis thaliana]
AT5G53190	-1.20107662410625	0.527402115688174	0.0227656257106903	0.163999760128405	Down	19.82	21.46	8.95	9.31	AT5G53190	GO:0005515,protein binding; GO:0005886,plasma membrane; GO:0008643,carbohydrate transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0034219,carbohydrate transmembrane transport; GO:0051119,sugar transmembrane transporter activity; 	--	NP_200131.2 Nodulin MtN3 family protein [Arabidopsis thaliana]
AT5G53490	-0.933548421351598	0.308530098366454	0.0024798145305699	0.0300118041480191	Down	60.14	56.70	27.09	35.36	AT5G53490	GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009543,chloroplast thylakoid lumen; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0016020,membrane; GO:0031977,thylakoid lumen; 	--	NP_001330392.1 Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]
AT5G53550	-1.05485237892983	0.537621481392742	0.0497540322036759	0.275535164949375	Down	7.74	7.11	3.83	3.42	AT5G53550	GO:0003006,developmental process involved in reproduction; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0009624,response to nematode; GO:0010039,response to iron ion; GO:0016020,membrane; GO:0033214,siderophore-dependent iron import into cell; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0048316,seed development; GO:0051980,iron-nicotianamine transmembrane transporter activity; GO:0055072,iron ion homeostasis; 	--	NP_001190532.1 YELLOW STRIPE like 3 [Arabidopsis thaliana]
AT5G53850	0.669744556106921	0.240115038193336	0.00528277623760504	0.054042533064144	Up	28.53	25.46	43.12	44.19	AT5G53850	GO:0000287,magnesium ion binding; GO:0003824,catalytic activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008152,metabolic process; GO:0008270,zinc ion binding; GO:0008652,cellular amino acid biosynthetic process; GO:0009086,methionine biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016787,hydrolase activity; GO:0016829,lyase activity; GO:0019284,L-methionine salvage from S-adenosylmethionine; GO:0019509,L-methionine salvage from methylthioadenosine; GO:0043715,2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity; GO:0043716,2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity; GO:0043874,acireductone synthase activity; GO:0046570,methylthioribulose 1-phosphate dehydratase activity; GO:0046872,metal ion binding; 	DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]; K16054; 	NP_001330483.1 haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]
AT5G54160	-0.635341741412918	0.145166508135305	1.20522046348225e-05	0.000356820044140746	Down	211.55	211.99	141.84	135.07	AT5G54160	GO:0005634,nucleus; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0008168,methyltransferase activity; GO:0008171,O-methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009809,lignin biosynthetic process; GO:0016740,transferase activity; GO:0017096,acetylserotonin O-methyltransferase activity; GO:0019438,aromatic compound biosynthetic process; GO:0030187,melatonin biosynthetic process; GO:0030744,luteolin O-methyltransferase activity; GO:0030755,quercetin 3-O-methyltransferase activity; GO:0032259,methylation; GO:0033799,myricetin 3'-O-methyltransferase activity; GO:0046983,protein dimerization activity; GO:0047763,caffeate O-methyltransferase activity; GO:0051555,flavonol biosynthetic process; GO:0102822,quercetin 3'-O-methyltransferase activity; 	E2.1.1.68, COMT; caffeic acid 3-O-methyltransferase [EC:2.1.1.68]; K13066; 	NP_200227.1 O-methyltransferase 1 [Arabidopsis thaliana]
AT5G54190	-1.42924342124174	0.386147177791289	0.000214504539249504	0.00411271840709443	Down	32.12	25.79	12.47	9.26	AT5G54190	GO:0003729,mRNA binding; GO:0005515,protein binding; GO:0009507,chloroplast; GO:0009534,chloroplast thylakoid; GO:0009536,plastid; GO:0009640,photomorphogenesis; GO:0009647,skotomorphogenesis; GO:0009723,response to ethylene; GO:0009941,chloroplast envelope; GO:0015979,photosynthesis; GO:0015995,chlorophyll biosynthetic process; GO:0016491,oxidoreductase activity; GO:0016630,protochlorophyllide reductase activity; 	por; protochlorophyllide reductase [EC:1.3.1.33]; K00218; 	NP_200230.1 protochlorophyllide oxidoreductase A [Arabidopsis thaliana]
AT5G54225	5.80576366933195	2.10088433304951	0.00571876100253585	1	Up	0.00	0.00	6.78	13.94	AT5G54225	GO:0003674,molecular_function; GO:0005576,extracellular region; GO:0006952,defense response; GO:0008150,biological_process; GO:0031640,killing of cells of another organism; GO:0050832,defense response to fungus; 	--	NP_001032074.1 low-molecular-weight cysteine-rich 83 [Arabidopsis thaliana]
AT5G54250	0.789413637717656	0.243939827439285	0.00121174991036016	0.0170235080838254	Up	23.60	20.87	33.99	44.32	AT5G54250	GO:0000166,nucleotide binding; GO:0005216,ion channel activity; GO:0005516,calmodulin binding; GO:0005886,plasma membrane; GO:0006811,ion transport; GO:0006952,defense response; GO:0008324,cation transmembrane transporter activity; GO:0009626,plant-type hypersensitive response; GO:0016020,membrane; GO:0030552,cAMP binding; GO:0030553,cGMP binding; GO:0034220,ion transmembrane transport; GO:0055085,transmembrane transport; GO:0098655,cation transmembrane transport; 	CNGC; cyclic nucleotide gated channel, plant; K05391; 	NP_001332114.1 cyclic nucleotide-gated cation channel 4 [Arabidopsis thaliana]
AT5G54270	-0.931303233503867	0.0786336929813696	2.32362344406844e-32	2.8824548823669e-29	Down	3656.74	3546.03	1917.70	1920.08	AT5G54270	GO:0005515,protein binding; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009517,PSII associated light-harvesting complex II; GO:0009522,photosystem I; GO:0009523,photosystem II; GO:0009534,chloroplast thylakoid; GO:0009535,chloroplast thylakoid membrane; GO:0009536,plastid; GO:0009579,thylakoid; GO:0009635,response to herbicide; GO:0009644,response to high light intensity; GO:0009737,response to abscisic acid; GO:0009765,photosynthesis, light harvesting; GO:0009768,photosynthesis, light harvesting in photosystem I; GO:0009769,photosynthesis, light harvesting in photosystem II; GO:0010119,regulation of stomatal movement; GO:0015979,photosynthesis; GO:0016020,membrane; GO:0016168,chlorophyll binding; GO:0019904,protein domain specific binding; GO:0042651,thylakoid membrane; GO:0046872,metal ion binding; 	LHCB3; light-harvesting complex II chlorophyll a/b binding protein 3; K08914; 	NP_200238.1 light-harvesting chlorophyll B-binding protein 3 [Arabidopsis thaliana]
AT5G54300	1.26840089571807	0.619396663884096	0.0405795358852973	0.24297498167387	Up	5.49	6.56	21.33	7.96	AT5G54300	GO:0003674,molecular_function; GO:0016020,membrane; 	--	NP_200241.1 cotton fiber-like protein (DUF761) [Arabidopsis thaliana]
AT5G54500	-0.948795238496734	0.240652265188377	8.06035587640971e-05	0.00182794725131376	Down	101.80	128.43	66.72	54.09	AT5G54500	GO:0000166,nucleotide binding; GO:0000325,plant-type vacuole; GO:0003955,NAD(P)H dehydrogenase (quinone) activity; GO:0005773,vacuole; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006979,response to oxidative stress; GO:0008753,NADPH dehydrogenase (quinone) activity; GO:0009536,plastid; GO:0009733,response to auxin; GO:0010181,FMN binding; GO:0016020,membrane; GO:0016491,oxidoreductase activity; GO:0016651,oxidoreductase activity, acting on NAD(P)H; GO:0016655,oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor; GO:0050136,NADH dehydrogenase (quinone) activity; GO:0071365,cellular response to auxin stimulus; 	wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]; K03809; 	NP_200261.1 flavodoxin-like quinone reductase 1 [Arabidopsis thaliana]
AT5G54600	-0.602533832539707	0.221968761599615	0.00663762351211168	0.0652084013171541	Down	147.95	157.44	113.61	90.11	AT5G54600	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005739,mitochondrion; GO:0005840,ribosome; GO:0006412,translation; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009941,chloroplast envelope; GO:0019843,rRNA binding; GO:0032544,plastid translation; GO:1990904,ribonucleoprotein complex; 	RP-L24, MRPL24, rplX; large subunit ribosomal protein L24; K02895; 	NP_851190.1 Translation protein SH3-like family protein [Arabidopsis thaliana]
AT5G54770	-0.732489938173547	0.0812505287537148	1.96507782596808e-19	7.38690619125275e-17	Down	2885.56	3032.43	1864.00	1755.08	AT5G54770	GO:0005506,iron ion binding; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006974,cellular response to DNA damage stimulus; GO:0008270,zinc ion binding; GO:0009228,thiamine biosynthetic process; GO:0009409,response to cold; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009579,thylakoid; GO:0009941,chloroplast envelope; GO:0010319,stromule; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016763,pentosyltransferase activity; GO:0018131,oxazole or thiazole biosynthetic process; GO:0019438,aromatic compound biosynthetic process; GO:0019904,protein domain specific binding; GO:0042803,protein homodimerization activity; GO:0044272,sulfur compound biosynthetic process; GO:0046872,metal ion binding; GO:0052837,thiazole biosynthetic process; GO:1901362,organic cyclic compound biosynthetic process; GO:1901566,organonitrogen compound biosynthetic process; 	THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60]; K03146; 	NP_200288.1 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) [Arabidopsis thaliana]
AT5G54870	-0.848265458151324	0.177684265409953	1.8059846694389e-06	6.66763090011593e-05	Down	110.53	106.45	68.49	53.59	AT5G54870	GO:0000325,plant-type vacuole; 	--	NP_200298.1 inositol-1,4,5-trisphosphate 5-phosphatase [Arabidopsis thaliana]
AT5G54910	0.680151255003971	0.309634863034305	0.0280473375889736	0.190854208881633	Up	11.82	11.14	19.00	18.37	AT5G54910	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; 	--	NP_200302.1 DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
AT5G55000	0.957720173737075	0.345625159056847	0.00558879734404448	0.0564109284400909	Up	20.47	18.61	39.68	37.44	AT5G55000	GO:0005515,protein binding; GO:0016567,protein ubiquitination; GO:0051260,protein homooligomerization; 	--	NP_851193.1 potassium channel tetramerization domain-containing protein / pentapeptide repeat-containing protein [Arabidopsis thaliana]
AT5G55180	-0.815950328182089	0.181263749613279	6.74903524828655e-06	0.000215777789316997	Down	105.58	103.89	64.21	56.48	AT5G55180	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005886,plasma membrane; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0042973,glucan endo-1,3-beta-D-glucosidase activity; 	--	NP_568822.1 O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]
AT5G55300	0.678913495982319	0.251712200834029	0.00699291403923036	0.0678772289958158	Up	15.68	13.95	26.17	21.97	AT5G55300	GO:0003677,DNA binding; GO:0003916,DNA topoisomerase activity; GO:0003917,DNA topoisomerase type I (single strand cut, ATP-independent) activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0006260,DNA replication; GO:0006265,DNA topological change; GO:0006338,chromatin remodeling; GO:0007059,chromosome segregation; GO:0009791,post-embryonic development; GO:0009793,embryo development ending in seed dormancy; GO:0009933,meristem structural organization; GO:0009965,leaf morphogenesis; GO:0010016,shoot system morphogenesis; GO:0010075,regulation of meristem growth; GO:0016853,isomerase activity; GO:0019827,stem cell population maintenance; GO:0048439,flower morphogenesis; GO:1905393,plant organ formation; 	--	NP_200341.1 DNA topoisomerase I alpha [Arabidopsis thaliana]
AT5G55320	-3.37030493973967	1.56155026383819	0.0309039671461325	1	Down	3.22	4.04	0.66	0.00	AT5G55320	GO:0006629,lipid metabolic process; GO:0008374,O-acyltransferase activity; GO:0016020,membrane; GO:0016740,transferase activity; GO:0016746,acyltransferase activity; GO:0047196,long-chain-alcohol O-fatty-acyltransferase activity; GO:0102966,arachidoyl-CoA:1-dodecanol O-acyltransferase activity; 	--	NP_200343.1 MBOAT (membrane bound O-acyl transferase) family protein [Arabidopsis thaliana]
AT5G55610	0.909784775843647	0.254802579135251	0.000356235502853035	0.00625935044318966	Up	31.09	32.79	64.60	57.17	AT5G55610	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0009536,plastid; 	--	NP_200372.1 isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana]
AT5G55920	0.854427896107908	0.148887435610441	9.53774181433188e-09	5.68825419263399e-07	Up	66.55	63.84	127.14	112.21	AT5G55920	GO:0000470,maturation of LSU-rRNA; GO:0001510,RNA methylation; GO:0003723,RNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006364,rRNA processing; GO:0006396,RNA processing; GO:0008168,methyltransferase activity; GO:0008757,S-adenosylmethionine-dependent methyltransferase activity; GO:0009383,rRNA (cytosine-C5-)-methyltransferase activity; GO:0009965,leaf morphogenesis; GO:0010015,root morphogenesis; GO:0016740,transferase activity; GO:0032259,methylation; GO:0042127,regulation of cell population proliferation; GO:0042254,ribosome biogenesis; GO:0051301,cell division; GO:0070475,rRNA base methylation; GO:0090069,regulation of ribosome biogenesis; 	--	NP_850927.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT5G55930	-0.873649635342446	0.27470647407008	0.00147121480752617	0.0199240389600024	Down	26.76	24.41	13.69	14.73	AT5G55930	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_200404.1 oligopeptide transporter 1 [Arabidopsis thaliana]
AT5G56120	-0.96546590005098	0.473436863395047	0.0414230232033621	0.245432920725534	Down	28.34	28.25	11.39	18.30	AT5G56120	GO:0003674,molecular_function; GO:0003746,translation elongation factor activity; GO:0006414,translational elongation; GO:0008150,biological_process; GO:0016020,membrane; 	--	NP_200423.2 RNA polymerase II elongation factor [Arabidopsis thaliana]
AT5G56710	1.00327754491427	0.122487001539217	2.59301695210549e-16	6.70132818559763e-14	Up	546.68	564.37	1140.76	1121.89	AT5G56710	GO:0002181,cytoplasmic translation; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L31e, RPL31; large subunit ribosomal protein L31e; K02910; 	NP_200482.1 Ribosomal protein L31e family protein [Arabidopsis thaliana]
AT5G56810	4.32364422324566	2.03559768860486	0.0336687168318927	1	Up	0.17	0.00	1.75	1.92	AT5G56810	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0008150,biological_process; 	--	NP_200492.1 F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]
AT5G56910	-0.967239214208007	0.365270326103285	0.00809673019413027	0.0758609804064849	Down	56.23	44.63	28.50	23.78	AT5G56910	--	--	NP_200501.1 Proteinase inhibitor I25, cystatin, conserved region [Arabidopsis thaliana]
AT5G57290	0.66350958680679	0.174005104050024	0.000137200319927707	0.00280853130149043	Up	396.94	298.65	532.67	587.98	AT5G57290	GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006414,translational elongation; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:1990904,ribonucleoprotein complex; 	RP-LP1, RPLP1; large subunit ribosomal protein LP1; K02942; 	NP_200539.1 60S acidic ribosomal protein family [Arabidopsis thaliana]
AT5G57400	3.21324859981144	1.12140789421951	0.00416522181605869	1	Up	0.64	1.05	6.44	9.46	AT5G57400	GO:0016020,membrane; 	--	NP_200550.5 transmembrane protein [Arabidopsis thaliana]
AT5G57780	2.69226796166052	0.990399621005847	0.00656053624688252	1	Up	1.39	2.55	12.05	13.77	AT5G57780	GO:0006355,regulation of DNA-templated transcription; 	--	NP_200586.1 transcription factor [Arabidopsis thaliana]
AT5G57890	1.76765545483303	0.412462699006095	1.82236087336511e-05	0.000517308618629158	Up	17.96	8.46	46.80	44.86	AT5G57890	GO:0000162,tryptophan biosynthetic process; GO:0004049,anthranilate synthase activity; GO:0006541,glutamine metabolic process; GO:0008652,cellular amino acid biosynthetic process; GO:0009073,aromatic amino acid family biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0016829,lyase activity; GO:0071704,organic substance metabolic process; 	trpG; anthranilate synthase component II [EC:4.1.3.27]; K01658; 	NP_200597.1 Glutamine amidotransferase type 1 family protein [Arabidopsis thaliana]
AT5G57990	0.749076731990433	0.178955605968291	2.84133021042725e-05	0.000764570526254883	Up	31.69	33.93	54.93	57.17	AT5G57990	GO:0004197,cysteine-type endopeptidase activity; GO:0004843,cysteine-type deubiquitinase activity; GO:0005634,nucleus; GO:0005829,cytosol; GO:0006508,proteolysis; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016579,protein deubiquitination; GO:0016787,hydrolase activity; 	--	NP_568873.1 ubiquitin-specific protease 23 [Arabidopsis thaliana]
AT5G58005	0.990286805393515	0.287979021809199	0.000584414568303762	0.00955159778630853	Up	72.09	77.77	148.05	154.49	AT5G58005	GO:0003674,molecular_function; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0008150,biological_process; GO:0045277,respiratory chain complex IV; 	COA6; cytochrome c oxidase assembly factor 6; K18179; 	NP_001032092.1 Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana]
AT5G58310	-1.37367135823344	0.522006470145671	0.00850034363857791	0.0787503829996706	Down	32.54	22.76	15.34	6.03	AT5G58310	GO:0005575,cellular_component; GO:0009694,jasmonic acid metabolic process; GO:0009696,salicylic acid metabolic process; GO:0016787,hydrolase activity; GO:0016788,hydrolase activity, acting on ester bonds; GO:0051723,protein methylesterase activity; GO:0080030,methyl indole-3-acetate esterase activity; GO:0080031,methyl salicylate esterase activity; GO:0080032,methyl jasmonate esterase activity; 	--	NP_200639.1 methyl esterase 18 [Arabidopsis thaliana]
AT5G58610	1.64796320878532	0.458132093562118	0.000321740922449259	0.00575930179362635	Up	2.07	2.34	6.05	8.02	AT5G58610	GO:0003674,molecular_function; GO:0008150,biological_process; GO:0046872,metal ion binding; 	--	NP_001330113.1 PHD finger transcription factor [Arabidopsis thaliana]
AT5G58840	-3.26527226184477	1.08029785201632	0.00250640880124949	1	Down	3.34	3.10	0.30	0.39	AT5G58840	GO:0004252,serine-type endopeptidase activity; GO:0005576,extracellular region; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008236,serine-type peptidase activity; GO:0016020,membrane; GO:0016787,hydrolase activity; 	--	NP_568890.2 Subtilase family protein [Arabidopsis thaliana]
AT5G58970	-1.13868558318928	0.537226492415683	0.0340428861275513	0.216676245465508	Down	14.01	19.94	5.62	10.21	AT5G58970	GO:0003333,amino acid transmembrane transport; GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005794,Golgi apparatus; GO:0005886,plasma membrane; GO:0006839,mitochondrial transport; GO:0015171,amino acid transmembrane transporter activity; GO:0016020,membrane; GO:0017077,oxidative phosphorylation uncoupler activity; GO:0022857,transmembrane transporter activity; GO:0031966,mitochondrial membrane; GO:1902600,proton transmembrane transport; GO:1990542,mitochondrial transmembrane transport; 	--	NP_568894.1 uncoupling protein 2 [Arabidopsis thaliana]
AT5G59370	-0.798693353917699	0.367413183371168	0.0297179959266161	0.19909426271187	Down	40.91	29.97	14.58	27.16	AT5G59370	GO:0000166,nucleotide binding; GO:0005200,structural constituent of cytoskeleton; GO:0005524,ATP binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005856,cytoskeleton; GO:0007010,cytoskeleton organization; GO:0009536,plastid; GO:0016787,hydrolase activity; 	--	NP_001078769.1 actin 4 [Arabidopsis thaliana]
AT5G59690	-0.653493568139942	0.191712566491999	0.000652695461784931	0.0104743689565874	Down	473.09	387.08	267.15	289.21	AT5G59690	GO:0000325,plant-type vacuole; GO:0000786,nucleosome; GO:0003677,DNA binding; GO:0005515,protein binding; GO:0005576,extracellular region; GO:0005634,nucleus; GO:0005694,chromosome; GO:0005730,nucleolus; GO:0005777,peroxisome; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0009414,response to water deprivation; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009579,thylakoid; GO:0030527,structural constituent of chromatin; GO:0046982,protein heterodimerization activity; 	H4; histone H4; K11254; 	GAV57897.1 Histone domain-containing protein, partial [Cephalotus follicularis]
AT5G59850	1.08091273767425	0.0906330207167913	8.63699630826883e-33	1.33927424005094e-29	Up	1529.14	1490.65	3326.39	3163.63	AT5G59850	GO:0000325,plant-type vacuole; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009505,plant-type cell wall; GO:0009506,plasmodesma; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S15Ae, RPS15A; small subunit ribosomal protein S15Ae; K02957; 	NP_001318947.1 ribosomal protein S15A [Arabidopsis thaliana]
AT5G59880	-0.620255512547738	0.158923684978721	9.50661072710269e-05	0.0020545210116674	Down	476.39	535.86	359.14	308.83	AT5G59880	GO:0003779,actin binding; GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0005739,mitochondrion; GO:0005829,cytosol; GO:0005856,cytoskeleton; GO:0005886,plasma membrane; GO:0007015,actin filament organization; GO:0009506,plasmodesma; GO:0009507,chloroplast; GO:0009536,plastid; GO:0015629,actin cytoskeleton; GO:0030042,actin filament depolymerization; GO:0051015,actin filament binding; 	CFL; cofilin; K05765; 	NP_851227.1 actin depolymerizing factor 3 [Arabidopsis thaliana]
AT5G60250	2.06823478420529	0.37943994037848	5.01559584632082e-08	2.48873865894439e-06	Up	4.05	5.76	21.60	20.06	AT5G60250	GO:0000151,ubiquitin ligase complex; GO:0000209,protein polyubiquitination; GO:0003676,nucleic acid binding; GO:0004523,RNA-DNA hybrid ribonuclease activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0031624,ubiquitin conjugating enzyme binding; GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; 	--	NP_200833.1 zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]
AT5G60510	-1.00817610784563	0.261074831175875	0.000112630037829126	0.00236809426994967	Down	107.85	94.32	40.79	61.97	AT5G60510	GO:0002094,polyprenyltransferase activity; GO:0005783,endoplasmic reticulum; GO:0006486,protein glycosylation; GO:0016094,polyprenol biosynthetic process; GO:0016740,transferase activity; GO:0016765,transferase activity, transferring alkyl or aryl (other than methyl) groups; 	DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87]; K11778; 	NP_200859.1 Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]
AT5G60600	-0.610141234137702	0.139160866243445	1.1628926419081e-05	0.000345939645632373	Down	119.53	109.98	77.83	74.90	AT5G60600	GO:0005506,iron ion binding; GO:0008299,isoprenoid biosynthetic process; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0009617,response to bacterium; GO:0009862,systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009941,chloroplast envelope; GO:0016114,terpenoid biosynthetic process; GO:0016491,oxidoreductase activity; GO:0019288,isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway; GO:0044237,cellular metabolic process; GO:0046429,4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity; GO:0046872,metal ion binding; GO:0051536,iron-sulfur cluster binding; GO:0051539,4 iron, 4 sulfur cluster binding; 	gcpE, ispG; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]; K03526; 	NP_001119467.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Arabidopsis thaliana]
AT5G60660	-0.86675034420616	0.399631219749416	0.0300921405501989	0.199515234380127	Down	33.70	37.63	13.87	26.25	AT5G60660	GO:0005886,plasma membrane; GO:0006833,water transport; GO:0009506,plasmodesma; GO:0015250,water channel activity; GO:0015267,channel activity; GO:0016020,membrane; GO:0048767,root hair elongation; GO:0055085,transmembrane transport; GO:0080170,hydrogen peroxide transmembrane transport; 	--	NP_200874.1 plasma membrane intrinsic protein 2;4 [Arabidopsis thaliana]
AT5G60670	0.856733984467607	0.212657255207213	5.60842277028623e-05	0.00136149676057535	Up	109.43	107.94	210.82	188.76	AT5G60670	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0015934,large ribosomal subunit; GO:0019843,rRNA binding; GO:0022625,cytosolic large ribosomal subunit; GO:0070180,large ribosomal subunit rRNA binding; GO:1990904,ribonucleoprotein complex; 	RP-L12e, RPL12; large subunit ribosomal protein L12e; K02870; 	NP_200875.1 Ribosomal protein L11 family protein [Arabidopsis thaliana]
AT5G60730	1.26620963747107	0.542899901324094	0.0196845080739936	0.147822372483919	Up	7.77	4.16	12.34	16.97	AT5G60730	GO:0000166,nucleotide binding; GO:0005524,ATP binding; GO:0005739,mitochondrion; GO:0005759,mitochondrial matrix; GO:0006620,post-translational protein targeting to endoplasmic reticulum membrane; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0043529,GET complex; 	--	NP_200881.2 Anion-transporting ATPase [Arabidopsis thaliana]
AT5G61090	-2.80477019189241	1.34546695718613	0.0371049646201785	1	Down	2.37	1.70	0.17	0.44	AT5G61090	GO:0003676,nucleic acid binding; GO:0004523,RNA-DNA hybrid ribonuclease activity; GO:0016740,transferase activity; GO:0090502,RNA phosphodiester bond hydrolysis, endonucleolytic; 	--	NP_001330380.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]
AT5G61240	-0.695755388747342	0.176094392192536	7.7813421796869e-05	0.0017776712659119	Down	150.91	145.16	98.26	87.19	AT5G61240	GO:0000138,Golgi trans cisterna; GO:0003674,molecular_function; GO:0005515,protein binding; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005802,trans-Golgi network; GO:0099503,secretory vesicle; 	--	NP_001190586.1 Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]
AT5G61310	1.27226992678468	0.384574441448399	0.000938796280495761	0.0139470273767065	Up	62.48	67.35	162.67	155.73	AT5G61310	GO:0005739,mitochondrion; GO:0005743,mitochondrial inner membrane; GO:0005746,mitochondrial respirasome; GO:0016020,membrane; 	--	NP_001032118.1 Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]
AT5G61330	0.820067269093797	0.33098056400721	0.0132235941917556	0.110612734962056	Up	15.17	20.50	27.62	36.47	AT5G61330	GO:0005634,nucleus; GO:0005730,nucleolus; GO:0008150,biological_process; 	--	NP_001331140.1 rRNA processing protein-like protein [Arabidopsis thaliana]
AT5G61380	0.994459786703377	0.171077770446743	6.13958508278041e-09	3.80807764759455e-07	Up	61.70	48.81	117.39	106.29	AT5G61380	GO:0000160,phosphorelay signal transduction system; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0007623,circadian rhythm; GO:0009736,cytokinin-activated signaling pathway; GO:0009908,flower development; GO:0010031,circumnutation; GO:0010468,regulation of gene expression; GO:0010629,negative regulation of gene expression; GO:0048511,rhythmic process; 	TOC1, APRR1; pseudo-response regulator 1; K12127; 	NP_200946.1 CCT motif -containing response regulator protein [Arabidopsis thaliana]
AT5G61520	0.958774952942816	0.410117954506291	0.0193974739040298	0.146276999258049	Up	10.16	7.67	14.85	20.50	AT5G61520	GO:0008643,carbohydrate transport; GO:0015144,carbohydrate transmembrane transporter activity; GO:0015145,monosaccharide transmembrane transporter activity; GO:0015293,symporter activity; GO:0015749,monosaccharide transmembrane transport; GO:0016020,membrane; GO:0016021,integral component of membrane; GO:0022857,transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_200960.2 Major facilitator superfamily protein [Arabidopsis thaliana]
AT5G61550	-1.17785161024738	0.394293237199358	0.00281501437181652	0.0330900745493911	Down	10.69	13.04	4.83	5.87	AT5G61550	GO:0000166,nucleotide binding; GO:0004672,protein kinase activity; GO:0004674,protein serine/threonine kinase activity; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006468,protein phosphorylation; GO:0016301,kinase activity; GO:0016310,phosphorylation; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0106310,protein serine kinase activity; 	--	NP_001332142.1 U-box domain-containing protein kinase family protein [Arabidopsis thaliana]
AT5G61590	1.02231085471649	0.329642585021733	0.00192692116982108	0.0245667596214086	Up	38.66	31.02	81.30	62.28	AT5G61590	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006351,DNA-templated transcription; GO:0006355,regulation of DNA-templated transcription; GO:0009414,response to water deprivation; GO:0009873,ethylene-activated signaling pathway; GO:0019760,glucosinolate metabolic process; GO:0045893,positive regulation of DNA-templated transcription; GO:1904277,negative regulation of wax biosynthetic process; 	--	NP_200967.1 Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]
AT5G61660	-1.1714474404209	0.3702516080742	0.00155658171154789	0.020873734232745	Down	81.57	88.38	34.16	42.85	AT5G61660	GO:0003674,molecular_function; GO:0005575,cellular_component; GO:0008150,biological_process; 	--	NP_568938.1 glycine-rich protein [Arabidopsis thaliana]
AT5G61780	-0.598521728387915	0.133346156131599	7.17327191284779e-06	0.000224708176966861	Down	103.52	117.17	74.61	73.48	AT5G61780	GO:0000932,P-body; GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0004518,nuclease activity; GO:0005634,nucleus; GO:0005635,nuclear envelope; GO:0005737,cytoplasm; GO:0005783,endoplasmic reticulum; GO:0005829,cytosol; GO:0006397,mRNA processing; GO:0006402,mRNA catabolic process; GO:0009506,plasmodesma; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0009686,gibberellin biosynthetic process; GO:0009845,seed germination; GO:0010372,positive regulation of gibberellin biosynthetic process; GO:0010494,cytoplasmic stress granule; GO:0016442,RISC complex; GO:0016787,hydrolase activity; GO:0031047,gene silencing by RNA; GO:0034605,cellular response to heat; GO:0046686,response to cadmium ion; GO:0048471,perinuclear region of cytoplasm; GO:0090305,nucleic acid phosphodiester bond hydrolysis; 	--	NP_200986.1 TUDOR-SN protein 2 [Arabidopsis thaliana]
AT5G62065	-2.75495220785667	1.06391207366502	0.00961280464669685	1	Down	16.14	18.44	2.79	2.39	AT5G62065	GO:0003674,molecular_function; GO:0006869,lipid transport; GO:0008289,lipid binding; 	--	NP_001078780.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT5G62080	-1.61043371919424	0.14861643620627	2.31967948909122e-27	1.69268376836333e-24	Down	1094.17	1138.21	345.65	399.17	AT5G62080	GO:0005802,trans-Golgi network; GO:0043668,exine; 	--	NP_568949.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]
AT5G62190	0.663302793278323	0.150691044824395	1.07386215738346e-05	0.000321769566723232	Up	66.48	75.87	116.00	112.97	AT5G62190	GO:0000166,nucleotide binding; GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0003724,RNA helicase activity; GO:0004386,helicase activity; GO:0005524,ATP binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0016070,RNA metabolic process; GO:0016787,hydrolase activity; GO:0016887,ATP hydrolysis activity; GO:0017151,DEAD/H-box RNA helicase binding; 	--	NP_201025.1 DEAD box RNA helicase (PRH75) [Arabidopsis thaliana]
AT5G62290	0.738628364692355	0.149978830839024	8.44103544125602e-07	3.30318752835271e-05	Up	184.04	189.96	323.27	310.58	AT5G62290	GO:0000387,spliceosomal snRNP assembly; GO:0003674,molecular_function; GO:0005634,nucleus; GO:0005681,spliceosomal complex; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0005886,plasma membrane; GO:0006821,chloride transport; GO:0006884,cell volume homeostasis; GO:0034709,methylosome; GO:0034715,pICln-Sm protein complex; GO:0045292,mRNA cis splicing, via spliceosome; 	CLNS1A; chloride channel, nucleotide-sensitive, 1A; K05019; 	NP_201035.1 nucleotide-sensitive chloride conductance regulator (ICln) family protein [Arabidopsis thaliana]
AT5G62540	1.09814166875205	0.337463912324858	0.0011375181253592	0.0161862858085107	Up	57.41	35.24	97.58	104.38	AT5G62540	GO:0000166,nucleotide binding; GO:0000209,protein polyubiquitination; GO:0004842,ubiquitin-protein transferase activity; GO:0005524,ATP binding; GO:0006281,DNA repair; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016574,histone ubiquitination; GO:0016740,transferase activity; GO:0043161,proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0061631,ubiquitin conjugating enzyme activity; 	UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]; K10573; 	NP_568956.1 ubiquitin-conjugating enzyme 3 [Arabidopsis thaliana]
AT5G62770	1.21003686257655	0.579388371715623	0.0367552053207293	0.228088205104375	Up	7.26	7.02	13.80	19.89	AT5G62770	GO:0003674,molecular_function; GO:0005515,protein binding; GO:0016301,kinase activity; GO:0016310,phosphorylation; 	--	NP_201083.1 membrane-associated kinase regulator, putative (DUF1645) [Arabidopsis thaliana]
AT5G63150	1.9081970348435	0.61675815016073	0.00197534349202007	0.0250297609994985	Up	7.87	10.50	27.51	42.65	AT5G63150	GO:0005575,cellular_component; GO:0006397,mRNA processing; 	--	NP_568966.1 hypothetical protein AT5G63150 [Arabidopsis thaliana]
AT5G63180	0.61840926488325	0.306643255065346	0.0437262127756251	0.254438266885568	Up	21.64	19.63	31.69	32.73	AT5G63180	GO:0009536,plastid; GO:0016829,lyase activity; GO:0030570,pectate lyase activity; GO:0045490,pectin catabolic process; GO:0046872,metal ion binding; 	pel; pectate lyase [EC:4.2.2.2]; K01728; 	NP_568967.1 Pectin lyase-like superfamily protein [Arabidopsis thaliana]
AT5G63420	0.702690677126601	0.250172402300226	0.00497225561484153	0.0515726010887201	Up	17.47	18.92	24.67	35.68	AT5G63420	GO:0003723,RNA binding; GO:0003729,mRNA binding; GO:0004518,nuclease activity; GO:0004519,endonuclease activity; GO:0004527,exonuclease activity; GO:0006364,rRNA processing; GO:0008409,5'-3' exonuclease activity; GO:0009416,response to light stimulus; GO:0009507,chloroplast; GO:0009536,plastid; GO:0009658,chloroplast organization; GO:0009734,auxin-activated signaling pathway; GO:0009793,embryo development ending in seed dormancy; GO:0009942,longitudinal axis specification; GO:0016787,hydrolase activity; GO:0046872,metal ion binding; GO:0060918,auxin transport; GO:0090305,nucleic acid phosphodiester bond hydrolysis; 	--	NP_201147.2 RNA-metabolising metallo-beta-lactamase family protein [Arabidopsis thaliana]
AT5G63510	-0.662547427426776	0.250060400459108	0.00805991466870239	0.0758395254198092	Down	77.26	79.40	49.01	51.64	AT5G63510	GO:0004089,carbonate dehydratase activity; GO:0005515,protein binding; GO:0005739,mitochondrion; GO:0005747,mitochondrial respiratory chain complex I; GO:0009536,plastid; GO:0009651,response to salt stress; GO:0009737,response to abscisic acid; GO:0009853,photorespiration; GO:0010228,vegetative to reproductive phase transition of meristem; GO:0016020,membrane; GO:0031966,mitochondrial membrane; GO:0045271,respiratory chain complex I; GO:0046872,metal ion binding; 	GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-]; K01726; 	NP_001190608.1 gamma carbonic anhydrase like 1 [Arabidopsis thaliana]
AT5G63520	1.71874799023044	0.296958602589937	7.12985421001597e-09	4.31443129147552e-07	Up	11.64	12.31	44.99	34.92	AT5G63520	GO:0000209,protein polyubiquitination; GO:0005515,protein binding; GO:0032436,positive regulation of proteasomal ubiquitin-dependent protein catabolic process; 	--	NP_201157.4 F-box/LRR protein [Arabidopsis thaliana]
AT5G63810	-0.585855895243504	0.17818960525305	0.00100965269911064	0.0148046592582357	Down	64.10	72.53	49.27	43.07	AT5G63810	GO:0004553,hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0004565,beta-galactosidase activity; GO:0005576,extracellular region; GO:0005773,vacuole; GO:0005975,carbohydrate metabolic process; GO:0008152,metabolic process; GO:0009536,plastid; GO:0016787,hydrolase activity; GO:0016798,hydrolase activity, acting on glycosyl bonds; GO:0048046,apoplast; 	--	NP_201186.1 beta-galactosidase 10 [Arabidopsis thaliana]
AT5G63850	-1.26879806707084	0.179816177150554	1.71260209002079e-12	2.19018854914514e-10	Down	118.73	123.15	53.23	48.61	AT5G63850	GO:0003333,amino acid transmembrane transport; GO:0005886,plasma membrane; GO:0006865,amino acid transport; GO:0015171,amino acid transmembrane transporter activity; GO:0015172,acidic amino acid transmembrane transporter activity; GO:0015175,neutral amino acid transmembrane transporter activity; GO:0015293,symporter activity; GO:0015399,primary active transmembrane transporter activity; GO:0015800,acidic amino acid transport; GO:0015804,neutral amino acid transport; GO:0016020,membrane; 	--	NP_201190.1 amino acid permease 4 [Arabidopsis thaliana]
AT5G64030	-0.605095715105367	0.153930965777313	8.46090732737232e-05	0.00188772581647578	Down	85.62	79.53	57.60	52.62	AT5G64030	GO:0000139,Golgi membrane; GO:0005737,cytoplasm; GO:0005768,endosome; GO:0005794,Golgi apparatus; GO:0005797,Golgi medial cisterna; GO:0005802,trans-Golgi network; GO:0008168,methyltransferase activity; GO:0009536,plastid; GO:0016020,membrane; GO:0016740,transferase activity; GO:0032259,methylation; 	--	NP_201208.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Arabidopsis thaliana]
AT5G64140	0.728608090276106	0.252456576424875	0.00390081759048631	0.0431013946307316	Up	194.64	240.34	392.82	338.15	AT5G64140	GO:0000028,ribosomal small subunit assembly; GO:0003729,mRNA binding; GO:0003735,structural constituent of ribosome; GO:0005737,cytoplasm; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0022626,cytosolic ribosome; GO:0022627,cytosolic small ribosomal subunit; GO:0030490,maturation of SSU-rRNA; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-S28e, RPS28; small subunit ribosomal protein S28e; K02979; 	NP_201219.1 ribosomal protein S28 [Arabidopsis thaliana]
AT5G64240	-0.727591136989578	0.341157659063989	0.032948333981208	0.211993819002534	Down	34.57	27.72	19.04	19.21	AT5G64240	GO:0004197,cysteine-type endopeptidase activity; GO:0006508,proteolysis; GO:0008233,peptidase activity; GO:0008234,cysteine-type peptidase activity; GO:0016787,hydrolase activity; 	--	NP_851262.1 metacaspase 3 [Arabidopsis thaliana]
AT5G64310	-1.22758150048627	0.193098170200172	2.0534110408463e-10	1.7095680511207e-08	Down	373.33	388.86	149.98	181.85	AT5G64310	GO:0005886,plasma membrane; GO:0016020,membrane; 	--	NP_201236.1 arabinogalactan protein 1 [Arabidopsis thaliana]
AT5G64340	1.63931727579466	0.722091893538016	0.0231934136427922	1	Up	3.58	2.21	9.67	8.70	AT5G64340	GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009826,unidimensional cell growth; GO:0046983,protein dimerization activity; 	--	NP_201239.1 transcription factor SAC51 [Arabidopsis thaliana]
AT5G64370	-0.631808941930657	0.296153900125778	0.0328935291386517	0.211751026966774	Down	36.47	37.36	25.03	23.33	AT5G64370	GO:0003837,beta-ureidopropionase activity; GO:0005737,cytoplasm; GO:0005829,cytosol; GO:0006212,uracil catabolic process; GO:0006807,nitrogen compound metabolic process; GO:0016787,hydrolase activity; GO:0016810,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; GO:0016811,hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; GO:0019483,beta-alanine biosynthetic process; GO:0033396,beta-alanine biosynthetic process via 3-ureidopropionate; GO:0043562,cellular response to nitrogen levels; 	UPB1, pydC; beta-ureidopropionase [EC:3.5.1.6]; K01431; 	NP_201242.2 beta-ureidopropionase [Arabidopsis thaliana]
AT5G64410	-1.02818685804031	0.32910214419718	0.00178278290786765	0.0231817840378387	Down	21.29	17.99	10.79	8.72	AT5G64410	GO:0005886,plasma membrane; GO:0015031,protein transport; GO:0015833,peptide transport; GO:0016020,membrane; GO:0035672,oligopeptide transmembrane transport; GO:0035673,oligopeptide transmembrane transporter activity; GO:0055085,transmembrane transport; 	--	NP_201246.1 oligopeptide transporter 4 [Arabidopsis thaliana]
AT5G64420	0.643084538515291	0.163047153290759	8.00792002037903e-05	0.0018193818288059	Up	28.80	29.62	49.23	43.37	AT5G64420	GO:0003677,DNA binding; GO:0005634,nucleus; GO:0005730,nucleolus; GO:0006355,regulation of DNA-templated transcription; GO:0008134,transcription factor binding; 	--	NP_201247.1 DNA polymerase V family [Arabidopsis thaliana]
AT5G64630	-1.56505218042277	0.200517503464611	5.94708098478721e-15	1.20940228879156e-12	Down	97.66	104.63	38.38	30.80	AT5G64630	GO:0000724,double-strand break repair via homologous recombination; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006281,DNA repair; GO:0006310,DNA recombination; GO:0006325,chromatin organization; GO:0006334,nucleosome assembly; GO:0006335,DNA replication-dependent chromatin assembly; GO:0006974,cellular response to DNA damage stimulus; GO:0009555,pollen development; GO:0009933,meristem structural organization; GO:0010026,trichome differentiation; GO:0031507,heterochromatin formation; GO:0033186,CAF-1 complex; GO:0048366,leaf development; 	--	NP_568990.1 Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]
AT5G64816	0.730997112152139	0.285132176696888	0.0103559090843896	0.092076961885421	Up	93.60	79.94	123.64	169.99	AT5G64816	GO:0008150,biological_process; GO:0009536,plastid; 	--	NP_001331704.1 thionin-like protein [Arabidopsis thaliana]
AT5G64920	0.985699775042795	0.500390378428989	0.0488542381766881	0.272861431756439	Up	8.86	9.74	13.43	24.17	AT5G64920	GO:0005515,protein binding; GO:0005737,cytoplasm; GO:0006511,ubiquitin-dependent protein catabolic process; GO:0016567,protein ubiquitination; GO:0016740,transferase activity; GO:0046872,metal ion binding; GO:0061630,ubiquitin protein ligase activity; 	--	NP_201297.1 COP1-interacting protein 8 [Arabidopsis thaliana]
AT5G65205	-0.838870763127782	0.366141240420934	0.0219569093824906	0.159808984940644	Down	40.69	42.32	17.70	29.83	AT5G65205	GO:0005783,endoplasmic reticulum; GO:0008150,biological_process; GO:0016491,oxidoreductase activity; 	--	NP_569008.1 NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]
AT5G65840	-0.946690325821147	0.333078246288052	0.00447969056261453	0.0479056564045114	Down	54.33	44.16	27.71	24.10	AT5G65840	GO:0009507,chloroplast; GO:0009536,plastid; GO:0009570,chloroplast stroma; GO:0016209,antioxidant activity; GO:0098869,cellular oxidant detoxification; 	--	NP_201385.2 Thioredoxin superfamily protein [Arabidopsis thaliana]
AT5G65950	0.713655350563841	0.240460397232685	0.00299870514118627	0.0347653619405754	Up	12.33	12.54	22.19	19.18	AT5G65950	GO:0003674,molecular_function; GO:0005829,cytosol; GO:0006895,Golgi to endosome transport; GO:0009536,plastid; 	--	NP_201396.4 trafficking protein particle complex subunit-like protein [Arabidopsis thaliana]
AT5G65960	0.720069768264192	0.302752132944651	0.0173873145502688	0.136081789902892	Up	21.80	26.14	35.97	44.41	AT5G65960	GO:0003924,GTPase activity; GO:0005525,GTP binding; 	--	NP_569023.1 GTP binding protein [Arabidopsis thaliana]
AT5G66052	1.78625091478543	0.904033499806439	0.0481697228560803	1	Up	4.59	15.15	43.01	25.52	AT5G66052	GO:0016020,membrane; 	--	NP_680472.1 transmembrane protein [Arabidopsis thaliana]
AT5G66320	-0.703658531138353	0.318140030319464	0.0269812667254466	0.185636502345627	Down	50.07	36.10	27.79	25.94	AT5G66320	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0008270,zinc ion binding; GO:0030154,cell differentiation; GO:0043565,sequence-specific DNA binding; GO:0045893,positive regulation of DNA-templated transcription; GO:0046872,metal ion binding; 	--	NP_201433.1 GATA transcription factor 5 [Arabidopsis thaliana]
AT5G66730	0.709491611666093	0.354114940307561	0.0451168867459865	0.259303949895941	Up	13.72	11.82	21.10	21.36	AT5G66730	GO:0000976,transcription cis-regulatory region binding; GO:0003677,DNA binding; GO:0003700,DNA-binding transcription factor activity; GO:0005515,protein binding; GO:0005634,nucleus; GO:0006355,regulation of DNA-templated transcription; GO:0009740,gibberellic acid mediated signaling pathway; GO:0009937,regulation of gibberellic acid mediated signaling pathway; GO:0010029,regulation of seed germination; GO:0010431,seed maturation; GO:0046872,metal ion binding; 	--	NP_201474.1 C2H2-like zinc finger protein [Arabidopsis thaliana]
AT5G66900	1.13661583154042	0.503111683376684	0.0238726873796386	0.170098039600469	Up	2.51	3.75	7.63	6.32	AT5G66900	GO:0000166,nucleotide binding; GO:0005515,protein binding; GO:0005524,ATP binding; GO:0005829,cytosol; GO:0006952,defense response; GO:0012505,endomembrane system; GO:0043130,ubiquitin binding; GO:0043531,ADP binding; GO:0050832,defense response to fungus; 	--	NP_001331503.1 Disease resistance protein (CC-NBS-LRR class) family [Arabidopsis thaliana]
AT5G67240	1.13812910132923	0.220447867989584	2.43278028696986e-07	1.07016451985323e-05	Up	18.95	19.96	40.45	46.67	AT5G67240	GO:0003676,nucleic acid binding; GO:0003723,RNA binding; GO:0004518,nuclease activity; GO:0004527,exonuclease activity; GO:0005634,nucleus; GO:0016592,mediator complex; GO:0016787,hydrolase activity; GO:0090305,nucleic acid phosphodiester bond hydrolysis; 	REX1, REXO1, RNH70; RNA exonuclease 1 [EC:3.1.-.-]; K14570; 	NP_201525.2 small RNA degrading nuclease 3 [Arabidopsis thaliana]
AT5G67510	0.945130011609988	0.222814861658217	2.21761161145825e-05	0.000618190382924484	Up	129.10	102.18	234.15	218.38	AT5G67510	GO:0002181,cytoplasmic translation; GO:0003723,RNA binding; GO:0003735,structural constituent of ribosome; GO:0005515,protein binding; GO:0005840,ribosome; GO:0006412,translation; GO:0009536,plastid; GO:0015934,large ribosomal subunit; GO:0022625,cytosolic large ribosomal subunit; GO:0022626,cytosolic ribosome; GO:0042273,ribosomal large subunit biogenesis; GO:0042788,polysomal ribosome; GO:1990904,ribonucleoprotein complex; 	RP-L26e, RPL26; large subunit ribosomal protein L26e; K02898; 	NP_201552.1 Translation protein SH3-like family protein [Arabidopsis thaliana]
AT5G67640	2.4554307506033	1.21775672327007	0.0437627908789028	1	Up	1.55	0.85	8.35	5.01	AT5G67640	GO:0008150,biological_process; 	--	NP_201565.1 hypothetical protein AT5G67640 [Arabidopsis thaliana]
ArthCp010	-0.616063852393224	0.142048033347787	1.44433541258015e-05	0.000419601423724984	Down	371.11	385.57	231.26	271.28	ArthCp010	--	ATPF0A, atpB; F-type H+-transporting ATPase subunit a; K02108; 	--
ArthCp025	-2.46603934247931	0.590267674376454	2.9430054028042e-05	0.000785117892941636	Down	52.56	32.93	9.20	6.37	ArthCp025	--	ndhJ; NAD(P)H-quinone oxidoreductase subunit J [EC:7.1.1.2]; K05581; 	--
ArthCp026	-1.36266143584204	0.452340131960176	0.00259130370974612	0.031028110539962	Down	32.48	39.12	12.44	16.00	ArthCp026	--	ndhK; NAD(P)H-quinone oxidoreductase subunit K [EC:7.1.1.2]; K05582; 	--
ArthCp033	-0.727582064019883	0.274805377886568	0.00810589714887384	0.0758895502881358	Down	97.09	135.94	74.79	68.00	ArthCp033	--	--	--
ArthCp038	0.80607790014723	0.16000908912172	4.71157421467055e-07	1.93905230179813e-05	Up	2005.13	1422.72	2854.25	3239.13	ArthCp038	--	psbF; photosystem II cytochrome b559 subunit beta; K02708; 	--
ArthCp042	-0.671280282730852	0.280641090479926	0.0167589908557001	0.132458548537605	Down	378.33	463.51	239.96	298.85	ArthCp042	--	psaJ; photosystem I subunit IX; K02697; 	--
ArthCp043	1.54934114986092	0.37405085731717	3.44200040407209e-05	0.00088954197942738	Up	58.28	61.49	164.53	192.09	ArthCp043	--	RP-L33, MRPL33, rpmG; large subunit ribosomal protein L33; K02913; 	--
ArthCp044	0.784532152739191	0.16868572056864	3.30568099734073e-06	0.000113592722360143	Up	318.51	310.52	575.65	524.54	ArthCp044	--	RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18; K02963; 	--
ArthCp001	0.848412739205976	0.427195361394085	0.0470326087484385	0.266410735855881	Up	28.97	39.46	59.87	65.31	ArthCp001	--	RP-S12, MRPS12, rpsL; small subunit ribosomal protein S12; K02950; 	--
ArthCp051	1.38037588468062	0.197172873474762	2.54431041951343e-12	3.12496740139248e-10	Up	507.63	719.85	1802.28	1439.47	ArthCp051	--	psbN; PsbN protein; K02715; 	--
ArthCp079	-1.12158344913292	0.360126349417303	0.0018430910820315	0.023692792614094	Down	31.58	34.00	16.51	14.02	ArthCp079	--	ndhA; NAD(P)H-quinone oxidoreductase subunit 1 [EC:7.1.1.2]; K05572; 	--
DA397_mgp01	0.968964940769186	0.125480607497839	1.14491971796276e-14	2.18503524635817e-12	Up	610.11	757.39	1494.17	1225.53	DA397_mgp01	--	COX2; cytochrome c oxidase subunit 2; K02261; 	--
DA397_mgp37	0.864253056835534	0.151253645416282	1.10395074392238e-08	6.49028861533514e-07	Up	116.45	101.85	232.02	171.37	DA397_mgp37	--	ND5; NADH-ubiquinone oxidoreductase chain 5 [EC:7.1.1.2]; K03883; 	--
DA397_mgp34	0.776915872063057	0.251342373078606	0.0019943927607072	0.0252196148792791	Up	70.33	63.83	125.76	107.54	DA397_mgp34	--	ND1; NADH-ubiquinone oxidoreductase chain 1 [EC:7.1.1.2]; K03878; 	--
DA397_mgp17	1.73847324071215	0.658985901855017	0.00833710475666236	1	Up	3.35	3.68	15.43	8.26	DA397_mgp17	--	ATPeF0A, MTATP6, ATP6; F-type H+-transporting ATPase subunit a; K02126; 	--
DA397_mgp04	0.651996078600074	0.199442556128298	0.00107893187751672	0.015549982647457	Up	219.60	252.41	392.02	360.79	DA397_mgp04	--	ND4L; NADH-ubiquinone oxidoreductase chain 4L [EC:7.1.1.2]; K03882; 	--
DA397_mgp03	0.730158978295498	0.160291797354516	5.233920303881e-06	0.00017131076878534	Up	233.08	301.09	470.33	429.32	DA397_mgp03	--	--	--