Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 31336)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 29884)	% of Background Sequences with Motif
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1415	-3.259e+03	0.0000	7599.0	24.25%	2650.7	8.87%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1201	-2.766e+03	0.0000	7261.0	23.17%	2705.9	9.06%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1114	-2.566e+03	0.0000	4752.0	15.16%	1369.4	4.58%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-954	-2.198e+03	0.0000	4039.0	12.89%	1147.9	3.84%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-937	-2.158e+03	0.0000	4645.0	14.82%	1485.1	4.97%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-937	-2.158e+03	0.0000	2731.0	8.71%	554.9	1.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-930	-2.142e+03	0.0000	2947.0	9.40%	649.9	2.18%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-926	-2.134e+03	0.0000	4744.0	15.14%	1551.5	5.19%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-916	-2.111e+03	0.0000	2843.0	9.07%	613.1	2.05%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-898	-2.068e+03	0.0000	2364.0	7.54%	430.4	1.44%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-853	-1.966e+03	0.0000	2468.0	7.88%	495.8	1.66%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e-823	-1.895e+03	0.0000	2048.0	6.53%	349.3	1.17%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-821	-1.892e+03	0.0000	2049.0	6.54%	350.1	1.17%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-800	-1.843e+03	0.0000	4025.0	12.84%	1290.9	4.32%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e-787	-1.814e+03	0.0000	1961.0	6.26%	335.0	1.12%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-771	-1.777e+03	0.0000	2744.0	8.76%	668.4	2.24%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-743	-1.712e+03	0.0000	3797.0	12.12%	1226.2	4.10%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-727	-1.675e+03	0.0000	2282.0	7.28%	494.8	1.66%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-666	-1.535e+03	0.0000	4614.0	14.72%	1798.4	6.02%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-642	-1.480e+03	0.0000	1613.0	5.15%	276.0	0.92%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-587	-1.352e+03	0.0000	1654.0	5.28%	320.9	1.07%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-527	-1.215e+03	0.0000	2997.0	9.56%	1026.7	3.44%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-492	-1.134e+03	0.0000	1281.0	4.09%	227.2	0.76%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-489	-1.128e+03	0.0000	1816.0	5.79%	453.2	1.52%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-433	-9.978e+02	0.0000	1104.0	3.52%	191.8	0.64%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-422	-9.720e+02	0.0000	1202.0	3.84%	235.0	0.79%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-417	-9.605e+02	0.0000	1648.0	5.26%	432.5	1.45%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e-410	-9.452e+02	0.0000	1038.0	3.31%	178.8	0.60%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-393	-9.056e+02	0.0000	1537.0	4.90%	399.0	1.34%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-386	-8.906e+02	0.0000	937.0	2.99%	153.2	0.51%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-371	-8.559e+02	0.0000	909.0	2.90%	150.3	0.50%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-345	-7.956e+02	0.0000	1397.0	4.46%	372.4	1.25%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-334	-7.704e+02	0.0000	2200.0	7.02%	814.8	2.73%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-329	-7.585e+02	0.0000	1617.0	5.16%	497.5	1.67%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-313	-7.227e+02	0.0000	4030.0	12.86%	2045.5	6.85%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-312	-7.187e+02	0.0000	1214.0	3.87%	313.9	1.05%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-305	-7.031e+02	0.0000	1339.0	4.27%	379.5	1.27%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-298	-6.876e+02	0.0000	1637.0	5.22%	541.3	1.81%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-293	-6.763e+02	0.0000	759.0	2.42%	133.3	0.45%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-284	-6.550e+02	0.0000	708.0	2.26%	119.7	0.40%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-283	-6.528e+02	0.0000	1308.0	4.17%	384.4	1.29%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-282	-6.498e+02	0.0000	1613.0	5.15%	548.0	1.83%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-279	-6.435e+02	0.0000	2483.0	7.92%	1072.3	3.59%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-273	-6.303e+02	0.0000	1600.0	5.11%	550.7	1.84%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-263	-6.060e+02	0.0000	1494.0	4.77%	504.0	1.69%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-250	-5.774e+02	0.0000	1363.0	4.35%	447.1	1.50%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-233	-5.368e+02	0.0000	1479.0	4.72%	533.9	1.79%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-221	-5.093e+02	0.0000	1434.0	4.58%	523.6	1.75%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-188	-4.345e+02	0.0000	1593.0	5.08%	667.9	2.24%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-166	-3.839e+02	0.0000	472.0	1.51%	91.8	0.31%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-165	-3.805e+02	0.0000	3055.0	9.75%	1731.8	5.80%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-163	-3.775e+02	0.0000	2125.0	6.78%	1067.2	3.57%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-117	-2.697e+02	0.0000	1413.0	4.51%	688.2	2.30%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-89	-2.053e+02	0.0000	209.0	0.67%	33.4	0.11%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-72	-1.669e+02	0.0000	4143.0	13.22%	2994.7	10.02%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-60	-1.390e+02	0.0000	369.0	1.18%	130.9	0.44%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-57	-1.323e+02	0.0000	973.0	3.10%	532.8	1.78%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-48	-1.117e+02	0.0000	2269.0	7.24%	1579.0	5.29%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-44	-1.032e+02	0.0000	421.0	1.34%	185.1	0.62%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-38	-8.779e+01	0.0000	6240.0	19.91%	5107.0	17.09%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-37	-8.648e+01	0.0000	859.0	2.74%	512.1	1.71%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-30	-6.988e+01	0.0000	290.0	0.93%	129.4	0.43%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-30	-6.934e+01	0.0000	5548.0	17.70%	4576.8	15.32%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-27	-6.265e+01	0.0000	142.0	0.45%	46.4	0.16%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-25	-5.769e+01	0.0000	5906.0	18.85%	4963.7	16.61%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-23	-5.450e+01	0.0000	1230.0	3.92%	870.5	2.91%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e-19	-4.564e+01	0.0000	113.0	0.36%	39.7	0.13%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-19	-4.448e+01	0.0000	1311.0	4.18%	966.2	3.23%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-15	-3.580e+01	0.0000	2562.0	8.18%	2085.1	6.98%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-13	-3.145e+01	0.0000	5438.0	17.35%	4713.8	15.78%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-13	-3.141e+01	0.0000	7631.0	24.35%	6737.9	22.55%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-13	-3.069e+01	0.0000	235.0	0.75%	132.1	0.44%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-12	-2.855e+01	0.0000	10320.0	32.93%	9275.3	31.05%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-11	-2.746e+01	0.0000	5127.0	16.36%	4461.0	14.93%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-11	-2.721e+01	0.0000	7585.0	24.20%	6734.3	22.54%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-11	-2.703e+01	0.0000	1492.0	4.76%	1186.2	3.97%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-11	-2.673e+01	0.0000	6223.0	19.86%	5476.1	18.33%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-11	-2.562e+01	0.0000	7326.0	23.38%	6509.9	21.79%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-10	-2.488e+01	0.0000	4916.0	15.69%	4288.8	14.36%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-10	-2.476e+01	0.0000	820.0	2.62%	616.1	2.06%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-10	-2.372e+01	0.0000	7133.0	22.76%	6349.8	21.25%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-10	-2.326e+01	0.0000	917.0	2.93%	704.8	2.36%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-9	-2.193e+01	0.0000	4447.0	14.19%	3883.8	13.00%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-8	-2.065e+01	0.0000	2117.0	6.76%	1774.4	5.94%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-8	-2.039e+01	0.0000	10081.0	32.17%	9145.1	30.61%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-8	-2.030e+01	0.0000	6581.0	21.00%	5872.3	19.66%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-8	-2.016e+01	0.0000	1172.0	3.74%	938.2	3.14%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-8	-2.012e+01	0.0000	722.0	2.30%	549.5	1.84%
SeqBias: A/T bias	WWWWWWWWWW	1e-8	-1.989e+01	0.0000	31105.0	99.25%	29554.4	98.93%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-8	-1.979e+01	0.0000	1268.0	4.05%	1024.8	3.43%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-8	-1.942e+01	0.0000	4907.0	15.66%	4330.6	14.50%
SeqBias: GA-repeat	GAGAGAGAGA	1e-8	-1.926e+01	0.0000	10056.0	32.09%	9136.4	30.58%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-7	-1.803e+01	0.0000	5862.0	18.71%	5229.6	17.51%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-7	-1.787e+01	0.0000	5346.0	17.06%	4752.2	15.91%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-7	-1.714e+01	0.0000	434.0	1.38%	316.5	1.06%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-7	-1.683e+01	0.0000	55.0	0.18%	23.9	0.08%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-7	-1.679e+01	0.0000	628.0	2.00%	482.0	1.61%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-7	-1.642e+01	0.0000	890.0	2.84%	709.0	2.37%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-7	-1.622e+01	0.0000	2224.0	7.10%	1901.2	6.36%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-7	-1.622e+01	0.0000	155.0	0.49%	94.6	0.32%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-7	-1.621e+01	0.0000	151.0	0.48%	91.1	0.30%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-6	-1.611e+01	0.0000	611.0	1.95%	469.8	1.57%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-6	-1.602e+01	0.0000	6519.0	20.80%	5864.5	19.63%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.589e+01	0.0000	8651.0	27.60%	7862.0	26.32%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-6	-1.584e+01	0.0000	1879.0	6.00%	1592.7	5.33%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-6	-1.560e+01	0.0000	237.0	0.76%	159.7	0.53%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-6	-1.551e+01	0.0000	1040.0	3.32%	845.3	2.83%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-6	-1.549e+01	0.0000	1196.0	3.82%	983.6	3.29%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-6	-1.548e+01	0.0000	374.0	1.19%	271.0	0.91%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-6	-1.519e+01	0.0000	4603.0	14.69%	4093.9	13.70%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-6	-1.507e+01	0.0000	8187.0	26.12%	7437.0	24.89%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-6	-1.489e+01	0.0000	68.0	0.22%	33.7	0.11%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e-6	-1.486e+01	0.0000	13.0	0.04%	2.8	0.01%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-6	-1.469e+01	0.0000	8519.0	27.18%	7754.3	25.96%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-6	-1.446e+01	0.0000	658.0	2.10%	516.9	1.73%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-6	-1.442e+01	0.0000	727.0	2.32%	576.1	1.93%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-6	-1.402e+01	0.0000	3728.0	11.90%	3297.2	11.04%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-5	-1.369e+01	0.0000	1907.0	6.09%	1633.3	5.47%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-5	-1.369e+01	0.0000	586.0	1.87%	457.4	1.53%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-5	-1.363e+01	0.0000	82.0	0.26%	44.5	0.15%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-5	-1.362e+01	0.0000	489.0	1.56%	374.5	1.25%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-5	-1.357e+01	0.0000	2279.0	7.27%	1972.5	6.60%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-5	-1.345e+01	0.0000	2696.0	8.60%	2354.1	7.88%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-5	-1.330e+01	0.0000	288.0	0.92%	207.0	0.69%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-5	-1.327e+01	0.0000	4018.0	12.82%	3573.2	11.96%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-5	-1.312e+01	0.0000	559.0	1.78%	436.8	1.46%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-5	-1.309e+01	0.0000	752.0	2.40%	604.3	2.02%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-5	-1.305e+01	0.0000	409.0	1.31%	308.6	1.03%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-5	-1.279e+01	0.0000	11175.0	35.66%	10287.1	34.43%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-5	-1.262e+01	0.0000	5172.0	16.50%	4652.3	15.57%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-5	-1.244e+01	0.0000	580.0	1.85%	457.8	1.53%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-5	-1.241e+01	0.0000	54.0	0.17%	26.1	0.09%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-5	-1.231e+01	0.0000	489.0	1.56%	379.3	1.27%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-5	-1.228e+01	0.0000	194.0	0.62%	132.7	0.44%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-5	-1.226e+01	0.0000	794.0	2.53%	646.0	2.16%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-5	-1.224e+01	0.0000	259.0	0.83%	185.0	0.62%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-5	-1.224e+01	0.0000	863.0	2.75%	706.3	2.36%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-5	-1.214e+01	0.0000	6239.0	19.91%	5654.8	18.93%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-5	-1.211e+01	0.0000	1782.0	5.69%	1532.8	5.13%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-5	-1.208e+01	0.0000	446.0	1.42%	343.7	1.15%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-5	-1.204e+01	0.0000	3421.0	10.92%	3035.5	10.16%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-5	-1.197e+01	0.0000	1697.0	5.41%	1456.5	4.88%
SeqBias: CG-repeat	CGCGCGCGCG	1e-5	-1.188e+01	0.0000	72.0	0.23%	39.1	0.13%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-5	-1.175e+01	0.0001	469.0	1.50%	364.3	1.22%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-4	-1.132e+01	0.0001	511.0	1.63%	402.9	1.35%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-4	-1.128e+01	0.0001	269.0	0.86%	196.0	0.66%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-4	-1.126e+01	0.0001	11.0	0.04%	2.0	0.01%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-4	-1.124e+01	0.0001	2371.0	7.57%	2077.6	6.95%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-4	-1.114e+01	0.0001	5241.0	16.72%	4736.8	15.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-4	-1.101e+01	0.0001	623.0	1.99%	501.8	1.68%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-4	-1.095e+01	0.0001	2285.0	7.29%	2001.8	6.70%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-4	-1.094e+01	0.0001	149.0	0.48%	99.8	0.33%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-4	-1.089e+01	0.0001	7383.0	23.56%	6745.7	22.58%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e-4	-1.087e+01	0.0001	2914.0	9.30%	2580.2	8.64%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-4	-1.084e+01	0.0001	11840.0	37.78%	10952.0	36.66%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-4	-1.060e+01	0.0002	1799.0	5.74%	1560.2	5.22%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-4	-1.059e+01	0.0002	173.0	0.55%	119.6	0.40%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-4	-1.039e+01	0.0002	6864.0	21.90%	6266.7	20.98%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-4	-1.031e+01	0.0002	2471.0	7.88%	2178.3	7.29%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e-4	-1.029e+01	0.0002	100.0	0.32%	62.4	0.21%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-1.023e+01	0.0002	3971.0	12.67%	3566.0	11.94%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-1.020e+01	0.0002	13123.0	41.87%	12180.6	40.77%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-4	-1.001e+01	0.0003	1412.0	4.51%	1213.1	4.06%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-4	-1.001e+01	0.0003	3092.0	9.87%	2754.3	9.22%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-4	-9.993e+00	0.0003	1930.0	6.16%	1685.6	5.64%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-4	-9.993e+00	0.0003	1930.0	6.16%	1685.6	5.64%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-4	-9.930e+00	0.0003	1661.0	5.30%	1440.9	4.82%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e-4	-9.887e+00	0.0003	400.0	1.28%	312.2	1.04%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-4	-9.817e+00	0.0003	235.0	0.75%	172.2	0.58%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-4	-9.772e+00	0.0003	5951.0	18.99%	5420.3	18.14%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-4	-9.766e+00	0.0003	1734.0	5.53%	1508.4	5.05%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-4	-9.706e+00	0.0004	1236.0	3.94%	1056.7	3.54%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-4	-9.603e+00	0.0004	565.0	1.80%	457.6	1.53%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-4	-9.603e+00	0.0004	4017.0	12.82%	3617.5	12.11%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-4	-9.582e+00	0.0004	5622.0	17.94%	5115.0	17.12%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-4	-9.545e+00	0.0004	291.0	0.93%	221.0	0.74%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-4	-9.531e+00	0.0004	1025.0	3.27%	867.2	2.90%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-4	-9.473e+00	0.0004	1069.0	3.41%	907.0	3.04%
SeqBias: TA-repeat	TATATATATA	1e-4	-9.384e+00	0.0005	20347.0	64.93%	19091.2	63.90%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-4	-9.357e+00	0.0005	439.0	1.40%	348.6	1.17%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-4	-9.357e+00	0.0005	439.0	1.40%	348.7	1.17%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-4	-9.349e+00	0.0005	10027.0	32.00%	9265.0	31.01%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-4	-9.304e+00	0.0005	122.0	0.39%	81.8	0.27%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-3	-9.186e+00	0.0006	6734.0	21.49%	6164.5	20.63%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-9.101e+00	0.0006	7.0	0.02%	1.2	0.00%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-3	-9.081e+00	0.0006	212.0	0.68%	155.5	0.52%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e-3	-9.021e+00	0.0007	382.0	1.22%	300.1	1.00%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-3	-8.957e+00	0.0007	4205.0	13.42%	3801.4	12.72%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-3	-8.922e+00	0.0007	10496.0	33.49%	9716.6	32.52%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-8.893e+00	0.0007	31.0	0.10%	14.2	0.05%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-3	-8.887e+00	0.0007	10920.0	34.84%	10118.0	33.87%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-3	-8.883e+00	0.0007	2373.0	7.57%	2103.2	7.04%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-3	-8.849e+00	0.0007	449.0	1.43%	359.9	1.20%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-3	-8.769e+00	0.0008	1493.0	4.76%	1297.9	4.34%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-3	-8.745e+00	0.0008	5455.0	17.41%	4972.5	16.64%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-3	-8.720e+00	0.0008	786.0	2.51%	658.1	2.20%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-3	-8.651e+00	0.0009	1249.0	3.99%	1076.7	3.60%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-3	-8.603e+00	0.0009	890.0	2.84%	752.8	2.52%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-3	-8.529e+00	0.0010	1415.0	4.52%	1229.0	4.11%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-8.474e+00	0.0011	3766.0	12.02%	3399.2	11.38%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-3	-8.461e+00	0.0011	689.0	2.20%	574.0	1.92%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-3	-8.388e+00	0.0011	3973.0	12.68%	3593.2	12.03%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-3	-8.368e+00	0.0012	586.0	1.87%	482.8	1.62%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-8.260e+00	0.0013	4223.0	13.48%	3828.7	12.82%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-3	-8.139e+00	0.0014	257.0	0.82%	196.6	0.66%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-3	-8.123e+00	0.0014	7615.0	24.30%	7012.6	23.47%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-3	-8.088e+00	0.0015	627.0	2.00%	520.4	1.74%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-3	-8.056e+00	0.0015	497.0	1.59%	405.6	1.36%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-3	-8.004e+00	0.0016	4524.0	14.44%	4113.6	13.77%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-3	-8.002e+00	0.0016	1231.0	3.93%	1065.7	3.57%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-3	-7.934e+00	0.0017	6524.0	20.82%	5989.8	20.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-3	-7.836e+00	0.0019	2816.0	8.99%	2526.0	8.46%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-3	-7.817e+00	0.0019	51.0	0.16%	29.6	0.10%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-3	-7.770e+00	0.0020	971.0	3.10%	831.8	2.78%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-3	-7.732e+00	0.0021	1212.0	3.87%	1050.3	3.52%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-3	-7.698e+00	0.0021	4507.0	14.38%	4102.3	13.73%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-3	-7.694e+00	0.0021	2172.0	6.93%	1931.7	6.47%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-3	-7.676e+00	0.0021	2585.0	8.25%	2313.6	7.74%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e-3	-7.663e+00	0.0022	1141.0	3.64%	986.1	3.30%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-3	-7.589e+00	0.0023	5496.0	17.54%	5030.3	16.84%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-3	-7.470e+00	0.0026	1847.0	5.89%	1634.4	5.47%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-3	-7.460e+00	0.0026	8214.0	26.21%	7590.4	25.41%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-3	-7.433e+00	0.0027	8277.0	26.41%	7650.9	25.61%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-3	-7.338e+00	0.0029	567.0	1.81%	471.2	1.58%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-3	-7.237e+00	0.0032	638.0	2.04%	535.4	1.79%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-3	-7.227e+00	0.0032	8017.0	25.58%	7409.7	24.80%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-7.155e+00	0.0035	1001.0	3.19%	863.2	2.89%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-3	-7.154e+00	0.0035	7101.0	22.66%	6547.9	21.92%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-3	-7.137e+00	0.0035	2680.0	8.55%	2408.7	8.06%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-3	-7.118e+00	0.0035	428.0	1.37%	349.7	1.17%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-3	-7.105e+00	0.0036	1229.0	3.92%	1071.6	3.59%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-6.986e+00	0.0040	97.0	0.31%	66.7	0.22%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-3	-6.966e+00	0.0041	1578.0	5.04%	1392.8	4.66%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-3	-6.950e+00	0.0041	9798.0	31.26%	9098.8	30.46%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-6.928e+00	0.0042	507.0	1.62%	420.2	1.41%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e-2	-6.908e+00	0.0043	148.0	0.47%	108.6	0.36%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-2	-6.842e+00	0.0045	301.0	0.96%	239.1	0.80%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.782e+00	0.0048	9889.0	31.55%	9188.2	30.76%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-2	-6.709e+00	0.0051	231.0	0.74%	179.3	0.60%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-2	-6.673e+00	0.0053	62.0	0.20%	39.5	0.13%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-2	-6.611e+00	0.0056	770.0	2.46%	658.4	2.20%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-2	-6.597e+00	0.0057	9300.0	29.68%	8635.6	28.91%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-2	-6.542e+00	0.0060	1208.0	3.85%	1057.4	3.54%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-2	-6.539e+00	0.0060	2320.0	7.40%	2082.8	6.97%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-2	-6.518e+00	0.0061	8.0	0.03%	2.3	0.01%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-6.452e+00	0.0065	1056.0	3.37%	919.6	3.08%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e-2	-6.448e+00	0.0065	524.0	1.67%	438.8	1.47%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-2	-6.394e+00	0.0068	2360.0	7.53%	2122.0	7.10%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-2	-6.310e+00	0.0073	3983.0	12.71%	3635.4	12.17%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-2	-6.252e+00	0.0078	1253.0	4.00%	1101.1	3.69%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e-2	-6.232e+00	0.0079	1172.0	3.74%	1028.0	3.44%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-2	-6.204e+00	0.0081	3810.0	12.16%	3475.3	11.63%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-2	-6.144e+00	0.0085	7978.0	25.46%	7396.9	24.76%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-2	-6.139e+00	0.0085	2050.0	6.54%	1837.6	6.15%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-2	-6.119e+00	0.0087	336.0	1.07%	273.6	0.92%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-2	-6.084e+00	0.0090	164.0	0.52%	124.6	0.42%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-6.038e+00	0.0093	984.0	3.14%	857.5	2.87%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-2	-6.015e+00	0.0095	4621.0	14.75%	4238.9	14.19%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-6.011e+00	0.0095	2127.0	6.79%	1910.2	6.39%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-2	-5.998e+00	0.0096	4163.0	13.28%	3809.0	12.75%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-2	-5.882e+00	0.0108	435.0	1.39%	362.2	1.21%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-2	-5.824e+00	0.0113	2716.0	8.67%	2460.6	8.24%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e-2	-5.740e+00	0.0123	215.0	0.69%	169.2	0.57%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-2	-5.695e+00	0.0128	1323.0	4.22%	1171.9	3.92%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-2	-5.653e+00	0.0133	753.0	2.40%	650.3	2.18%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-2	-5.598e+00	0.0140	747.0	2.38%	645.1	2.16%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-2	-5.562e+00	0.0145	1266.0	4.04%	1120.2	3.75%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-2	-5.530e+00	0.0149	277.0	0.88%	224.3	0.75%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-2	-5.520e+00	0.0150	657.0	2.10%	564.8	1.89%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-2	-5.397e+00	0.0169	7794.0	24.87%	7240.5	24.24%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-2	-5.370e+00	0.0173	8392.0	26.78%	7806.1	26.13%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-2	-5.318e+00	0.0181	2610.0	8.33%	2369.7	7.93%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.287e+00	0.0186	366.0	1.17%	304.2	1.02%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-2	-5.265e+00	0.0190	646.0	2.06%	556.3	1.86%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-2	-5.264e+00	0.0190	1837.0	5.86%	1651.1	5.53%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-2	-5.263e+00	0.0190	3475.0	11.09%	3178.7	10.64%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-2	-5.180e+00	0.0204	843.0	2.69%	736.3	2.46%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.163e+00	0.0207	47.0	0.15%	30.2	0.10%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-2	-5.163e+00	0.0207	8029.0	25.62%	7468.2	25.00%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-2	-5.098e+00	0.0219	817.0	2.61%	713.5	2.39%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-2	-5.048e+00	0.0230	904.0	2.88%	793.7	2.66%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-2	-5.006e+00	0.0239	3003.0	9.58%	2741.5	9.18%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-2	-4.994e+00	0.0241	759.0	2.42%	661.7	2.21%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-4.933e+00	0.0255	788.0	2.51%	688.4	2.30%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-2	-4.908e+00	0.0261	1347.0	4.30%	1202.5	4.02%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-2	-4.875e+00	0.0268	829.0	2.65%	726.2	2.43%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-2	-4.862e+00	0.0271	4706.0	15.02%	4341.9	14.53%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-2	-4.858e+00	0.0271	2289.0	7.30%	2077.2	6.95%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-2	-4.845e+00	0.0274	1680.0	5.36%	1511.6	5.06%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-2	-4.833e+00	0.0276	3810.0	12.16%	3500.6	11.72%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e-2	-4.811e+00	0.0281	3087.0	9.85%	2823.0	9.45%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-2	-4.790e+00	0.0286	1499.0	4.78%	1344.4	4.50%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e-2	-4.770e+00	0.0291	668.0	2.13%	580.6	1.94%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-2	-4.766e+00	0.0291	635.0	2.03%	550.9	1.84%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-2	-4.664e+00	0.0322	1521.0	4.85%	1366.7	4.57%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-2	-4.653e+00	0.0324	42.0	0.13%	27.6	0.09%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e-2	-4.646e+00	0.0325	1153.0	3.68%	1026.7	3.44%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-2	-4.646e+00	0.0325	831.0	2.65%	731.0	2.45%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-2	-4.633e+00	0.0327	414.0	1.32%	351.4	1.18%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-4.631e+00	0.0327	5408.0	17.26%	5007.7	16.76%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e-2	-4.630e+00	0.0327	1016.0	3.24%	900.3	3.01%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e-2	-4.624e+00	0.0327	967.0	3.09%	855.7	2.86%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-1	-4.557e+00	0.0348	2345.0	7.48%	2134.3	7.14%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-1	-4.541e+00	0.0353	1461.0	4.66%	1312.9	4.39%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-4.539e+00	0.0353	7928.0	25.30%	7389.9	24.74%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-1	-4.468e+00	0.0377	5738.0	18.31%	5322.7	17.82%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-1	-4.466e+00	0.0377	792.0	2.53%	696.3	2.33%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-4.453e+00	0.0380	1130.0	3.61%	1007.8	3.37%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-4.449e+00	0.0381	94.0	0.30%	70.0	0.23%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-1	-4.411e+00	0.0394	2826.0	9.02%	2586.8	8.66%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.389e+00	0.0402	16.0	0.05%	8.7	0.03%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e-1	-4.375e+00	0.0406	71.0	0.23%	51.8	0.17%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-4.364e+00	0.0409	199.0	0.63%	161.7	0.54%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.364e+00	0.0409	23.0	0.07%	14.0	0.05%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-1	-4.347e+00	0.0414	1120.0	3.57%	999.7	3.35%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.314e+00	0.0426	2270.0	7.24%	2068.1	6.92%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-1	-4.312e+00	0.0426	588.0	1.88%	511.2	1.71%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-4.213e+00	0.0468	2341.0	7.47%	2136.3	7.15%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-1	-4.183e+00	0.0481	7205.0	22.99%	6716.0	22.48%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1	-4.182e+00	0.0481	3520.0	11.23%	3241.1	10.85%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-1	-4.176e+00	0.0481	1003.0	3.20%	893.6	2.99%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e-1	-4.144e+00	0.0495	1493.0	4.76%	1347.0	4.51%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-4.132e+00	0.0500	4956.0	15.81%	4593.4	15.38%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-1	-4.096e+00	0.0517	739.0	2.36%	651.0	2.18%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-4.070e+00	0.0529	2863.0	9.14%	2627.9	8.80%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.049e+00	0.0538	468.0	1.49%	404.7	1.35%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-1	-4.043e+00	0.0540	2935.0	9.37%	2695.5	9.02%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.033e+00	0.0543	344.0	1.10%	292.8	0.98%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-1	-3.999e+00	0.0560	65.0	0.21%	47.8	0.16%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-3.995e+00	0.0561	2034.0	6.49%	1853.0	6.20%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-3.977e+00	0.0569	25.0	0.08%	15.8	0.05%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.954e+00	0.0581	271.0	0.86%	227.7	0.76%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-1	-3.944e+00	0.0585	6448.0	20.58%	6006.6	20.11%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-1	-3.939e+00	0.0587	72.0	0.23%	53.9	0.18%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-3.897e+00	0.0610	210.0	0.67%	173.7	0.58%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.847e+00	0.0639	145.0	0.46%	116.6	0.39%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-3.834e+00	0.0645	421.0	1.34%	363.3	1.22%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-1	-3.755e+00	0.0696	69.0	0.22%	52.0	0.17%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.728e+00	0.0713	304.0	0.97%	258.6	0.87%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.699e+00	0.0732	286.0	0.91%	242.0	0.81%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.673e+00	0.0749	135.0	0.43%	108.1	0.36%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-3.650e+00	0.0765	98.0	0.31%	76.7	0.26%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-1	-3.644e+00	0.0767	1761.0	5.62%	1604.4	5.37%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.612e+00	0.0790	1474.0	4.70%	1337.9	4.48%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.584e+00	0.0809	324.0	1.03%	277.7	0.93%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-3.559e+00	0.0827	123.0	0.39%	98.5	0.33%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-1	-3.554e+00	0.0829	4738.0	15.12%	4402.3	14.74%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.546e+00	0.0833	574.0	1.83%	505.2	1.69%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-3.542e+00	0.0834	3168.0	10.11%	2924.6	9.79%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.526e+00	0.0845	80.0	0.26%	61.0	0.20%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-3.516e+00	0.0852	8507.0	27.15%	7968.5	26.67%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.495e+00	0.0868	55.0	0.18%	40.8	0.14%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.476e+00	0.0881	185.0	0.59%	153.3	0.51%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.476e+00	0.0881	5579.0	17.80%	5198.3	17.40%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e-1	-3.379e+00	0.0966	557.0	1.78%	491.7	1.65%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-1	-3.358e+00	0.0984	1399.0	4.46%	1271.1	4.25%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-1	-3.340e+00	0.0999	1536.0	4.90%	1399.0	4.68%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.308e+00	0.1029	46.0	0.15%	33.4	0.11%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.282e+00	0.1052	141.0	0.45%	115.9	0.39%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-1	-3.281e+00	0.1052	1099.0	3.51%	993.2	3.32%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-1	-3.275e+00	0.1054	2075.0	6.62%	1905.0	6.38%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e-1	-3.247e+00	0.1080	1191.0	3.80%	1079.5	3.61%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-1	-3.245e+00	0.1080	524.0	1.67%	462.5	1.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.238e+00	0.1084	47.0	0.15%	34.2	0.11%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.201e+00	0.1123	2795.0	8.92%	2581.8	8.64%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-1	-3.200e+00	0.1123	26.0	0.08%	17.7	0.06%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-1	-3.200e+00	0.1123	171.0	0.55%	142.4	0.48%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-1	-3.173e+00	0.1145	48.0	0.15%	35.8	0.12%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-1	-3.158e+00	0.1159	1581.0	5.04%	1444.8	4.84%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-1	-3.152e+00	0.1163	61.0	0.19%	46.1	0.15%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-1	-3.130e+00	0.1185	716.0	2.28%	640.0	2.14%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-1	-3.098e+00	0.1220	1050.0	3.35%	950.8	3.18%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.097e+00	0.1220	938.0	2.99%	846.4	2.83%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-1	-3.045e+00	0.1280	2954.0	9.43%	2734.7	9.15%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-3.028e+00	0.1298	281.0	0.90%	242.3	0.81%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-1	-3.026e+00	0.1298	152.0	0.49%	126.5	0.42%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.005e+00	0.1322	153.0	0.49%	127.9	0.43%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.977e+00	0.1355	713.0	2.28%	640.0	2.14%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e-1	-2.977e+00	0.1355	1003.0	3.20%	908.3	3.04%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-1	-2.971e+00	0.1357	714.0	2.28%	640.6	2.14%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.908e+00	0.1437	81.0	0.26%	64.9	0.22%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.908e+00	0.1437	81.0	0.26%	64.9	0.22%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-1	-2.895e+00	0.1452	1857.0	5.93%	1707.1	5.71%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-2.888e+00	0.1459	9033.0	28.82%	8489.7	28.42%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-1	-2.882e+00	0.1464	7886.0	25.16%	7401.5	24.78%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-1	-2.880e+00	0.1464	797.0	2.54%	718.0	2.40%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-1	-2.871e+00	0.1472	24.0	0.08%	16.0	0.05%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-2.864e+00	0.1478	2011.0	6.42%	1852.5	6.20%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.864e+00	0.1478	160.0	0.51%	134.8	0.45%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-2.847e+00	0.1497	1510.0	4.82%	1383.9	4.63%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-1	-2.809e+00	0.1550	7262.0	23.17%	6812.5	22.80%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-2.787e+00	0.1581	1652.0	5.27%	1517.4	5.08%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.775e+00	0.1596	958.0	3.06%	869.7	2.91%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-1	-2.707e+00	0.1704	31332.0	99.98%	29862.6	99.96%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-2.652e+00	0.1795	21.0	0.07%	14.6	0.05%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e-1	-2.645e+00	0.1803	398.0	1.27%	352.8	1.18%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.636e+00	0.1815	153.0	0.49%	129.5	0.43%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e-1	-2.632e+00	0.1819	412.0	1.31%	365.5	1.22%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.619e+00	0.1838	4604.0	14.69%	4302.6	14.40%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-2.618e+00	0.1838	7165.0	22.86%	6727.0	22.52%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-2.608e+00	0.1848	935.0	2.98%	850.9	2.85%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.595e+00	0.1867	284.0	0.91%	248.5	0.83%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.593e+00	0.1867	640.0	2.04%	576.5	1.93%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-2.586e+00	0.1875	795.0	2.54%	720.0	2.41%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-2.571e+00	0.1899	1914.0	6.11%	1767.0	5.91%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-1	-2.539e+00	0.1956	120.0	0.38%	100.5	0.34%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1	-2.517e+00	0.1995	653.0	2.08%	589.7	1.97%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.510e+00	0.2004	1593.0	5.08%	1467.6	4.91%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e-1	-2.503e+00	0.2014	86.0	0.27%	70.2	0.23%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.496e+00	0.2023	5065.0	16.16%	4742.0	15.87%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.495e+00	0.2023	214.0	0.68%	185.9	0.62%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e-1	-2.462e+00	0.2082	9.0	0.03%	5.8	0.02%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.449e+00	0.2104	541.0	1.73%	486.3	1.63%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.423e+00	0.2155	3586.0	11.44%	3346.3	11.20%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.418e+00	0.2160	209.0	0.67%	181.8	0.61%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1	-2.417e+00	0.2160	601.0	1.92%	542.8	1.82%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-2.413e+00	0.2160	3.0	0.01%	0.0	0.00%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-1	-2.407e+00	0.2167	117.0	0.37%	98.1	0.33%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-1	-2.379e+00	0.2224	1457.0	4.65%	1342.1	4.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.354e+00	0.2274	843.0	2.69%	768.1	2.57%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-2.344e+00	0.2292	130.0	0.41%	110.1	0.37%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-2.323e+00	0.2336	2450.0	7.82%	2278.0	7.62%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-2.299e+00	0.2387	5666.0	18.08%	5318.6	17.80%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-2.283e+00	0.2420	77.0	0.25%	63.5	0.21%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.274e+00	0.2435	124.0	0.40%	105.8	0.35%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.274e+00	0.2435	355.0	1.13%	316.5	1.06%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-2.269e+00	0.2436	529.0	1.69%	477.2	1.60%
SeqBias: CG bias	SSSSSSSSSS	1e0	-2.257e+00	0.2461	2462.0	7.86%	2290.9	7.67%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-2.204e+00	0.2588	2416.0	7.71%	2248.0	7.52%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.200e+00	0.2593	3856.0	12.30%	3608.9	12.08%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.198e+00	0.2593	63.0	0.20%	51.0	0.17%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-2.193e+00	0.2598	55.0	0.18%	44.2	0.15%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-2.170e+00	0.2654	1794.0	5.72%	1663.4	5.57%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-2.159e+00	0.2675	2826.0	9.02%	2636.6	8.83%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-2.138e+00	0.2728	595.0	1.90%	540.8	1.81%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.137e+00	0.2728	1019.0	3.25%	937.0	3.14%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.136e+00	0.2728	1162.0	3.71%	1070.1	3.58%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.135e+00	0.2728	1961.0	6.26%	1821.0	6.10%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-2.134e+00	0.2728	1227.0	3.92%	1131.4	3.79%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.132e+00	0.2728	34.0	0.11%	26.6	0.09%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-2.122e+00	0.2733	1312.0	4.19%	1211.1	4.05%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-2.108e+00	0.2765	75.0	0.24%	62.2	0.21%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-2.072e+00	0.2859	757.0	2.42%	692.2	2.32%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-2.065e+00	0.2874	2446.0	7.80%	2280.8	7.63%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-2.061e+00	0.2879	96.0	0.31%	81.7	0.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.036e+00	0.2945	184.0	0.59%	161.8	0.54%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.031e+00	0.2954	3184.0	10.16%	2978.5	9.97%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.015e+00	0.2995	259.0	0.83%	230.1	0.77%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-2.002e+00	0.3026	187.0	0.60%	164.2	0.55%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.997e+00	0.3034	23.0	0.07%	17.1	0.06%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.971e+00	0.3108	2314.0	7.38%	2158.7	7.23%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.957e+00	0.3144	63.0	0.20%	52.6	0.18%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.938e+00	0.3196	1012.0	3.23%	933.9	3.13%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.938e+00	0.3196	124.0	0.40%	107.0	0.36%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.938e+00	0.3196	124.0	0.40%	107.0	0.36%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.933e+00	0.3196	376.0	1.20%	339.9	1.14%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.931e+00	0.3196	548.0	1.75%	500.0	1.67%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.921e+00	0.3216	2072.0	6.61%	1931.6	6.47%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.916e+00	0.3225	74.0	0.24%	62.6	0.21%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.907e+00	0.3247	65.0	0.21%	54.2	0.18%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.902e+00	0.3256	1388.0	4.43%	1288.0	4.31%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.882e+00	0.3315	2720.0	8.68%	2544.0	8.52%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.881e+00	0.3315	441.0	1.41%	400.4	1.34%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.878e+00	0.3316	25.0	0.08%	19.7	0.07%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.873e+00	0.3324	486.0	1.55%	442.1	1.48%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.861e+00	0.3359	67.0	0.21%	56.2	0.19%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.859e+00	0.3359	6870.0	21.92%	6478.1	21.68%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.834e+00	0.3434	143.0	0.46%	125.0	0.42%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.833e+00	0.3434	78.0	0.25%	66.5	0.22%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.828e+00	0.3439	1745.0	5.57%	1625.6	5.44%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.826e+00	0.3439	4.0	0.01%	2.8	0.01%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.826e+00	0.3439	1080.0	3.45%	1000.0	3.35%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.817e+00	0.3456	838.0	2.67%	772.7	2.59%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.814e+00	0.3460	1525.0	4.87%	1418.4	4.75%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-1.807e+00	0.3476	761.0	2.43%	700.3	2.34%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.805e+00	0.3476	397.0	1.27%	360.6	1.21%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.803e+00	0.3476	4114.0	13.13%	3866.3	12.94%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.787e+00	0.3523	2499.0	7.97%	2338.1	7.83%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.785e+00	0.3526	896.0	2.86%	827.1	2.77%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.759e+00	0.3609	30680.0	97.90%	29222.5	97.82%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-1.742e+00	0.3663	1244.0	3.97%	1155.2	3.87%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.736e+00	0.3678	1077.0	3.44%	998.1	3.34%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.735e+00	0.3678	514.0	1.64%	470.8	1.58%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.733e+00	0.3678	2955.0	9.43%	2771.0	9.28%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.709e+00	0.3756	566.0	1.81%	519.5	1.74%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.705e+00	0.3763	536.0	1.71%	491.4	1.64%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.690e+00	0.3813	9.0	0.03%	6.6	0.02%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.687e+00	0.3814	2390.0	7.63%	2238.8	7.49%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.672e+00	0.3867	15.0	0.05%	11.1	0.04%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.667e+00	0.3878	5148.0	16.43%	4852.8	16.24%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-1.662e+00	0.3888	3056.0	9.75%	2869.3	9.60%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.630e+00	0.4007	979.0	3.12%	908.9	3.04%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-1.617e+00	0.4051	6001.0	19.15%	5665.0	18.96%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.587e+00	0.4164	1114.0	3.55%	1036.8	3.47%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.577e+00	0.4199	5167.0	16.49%	4874.2	16.32%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.551e+00	0.4300	1007.0	3.21%	936.8	3.14%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.534e+00	0.4366	1048.0	3.34%	975.2	3.26%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.531e+00	0.4372	2898.0	9.25%	2724.9	9.12%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.498e+00	0.4509	459.0	1.46%	422.6	1.41%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.486e+00	0.4553	192.0	0.61%	173.3	0.58%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.481e+00	0.4566	625.0	1.99%	578.3	1.94%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.461e+00	0.4650	141.0	0.45%	126.6	0.42%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.446e+00	0.4711	27829.0	88.80%	26489.6	88.67%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.439e+00	0.4733	5774.0	18.42%	5457.9	18.27%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.431e+00	0.4762	427.0	1.36%	393.0	1.32%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.425e+00	0.4782	968.0	3.09%	902.6	3.02%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-1.416e+00	0.4814	989.0	3.16%	922.1	3.09%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-1.398e+00	0.4895	49.0	0.16%	42.2	0.14%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.383e+00	0.4955	97.0	0.31%	86.0	0.29%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.382e+00	0.4955	123.0	0.39%	110.4	0.37%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.380e+00	0.4955	1437.0	4.59%	1347.0	4.51%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.373e+00	0.4976	3575.0	11.41%	3372.2	11.29%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.371e+00	0.4977	2264.0	7.22%	2129.3	7.13%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.360e+00	0.5023	5252.0	16.76%	4965.5	16.62%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.357e+00	0.5027	1989.0	6.35%	1869.2	6.26%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.331e+00	0.5153	89.0	0.28%	79.8	0.27%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.328e+00	0.5156	2851.0	9.10%	2687.5	9.00%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.327e+00	0.5156	1280.0	4.08%	1199.6	4.02%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.327e+00	0.5156	22.0	0.07%	18.1	0.06%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-1.319e+00	0.5172	10444.0	33.33%	9906.2	33.16%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.310e+00	0.5208	2574.0	8.21%	2425.0	8.12%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.301e+00	0.5248	329.0	1.05%	303.8	1.02%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.284e+00	0.5328	3159.0	10.08%	2982.0	9.98%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.274e+00	0.5368	179.0	0.57%	163.4	0.55%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-1.267e+00	0.5395	1236.0	3.94%	1159.2	3.88%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.265e+00	0.5399	2.0	0.01%	0.7	0.00%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.264e+00	0.5399	2628.0	8.39%	2478.1	8.29%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-1.256e+00	0.5428	323.0	1.03%	298.9	1.00%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.242e+00	0.5494	5497.0	17.54%	5204.5	17.42%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.237e+00	0.5509	599.0	1.91%	558.6	1.87%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.232e+00	0.5527	141.0	0.45%	128.4	0.43%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-1.218e+00	0.5596	2507.0	8.00%	2365.1	7.92%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.216e+00	0.5596	677.0	2.16%	632.7	2.12%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.209e+00	0.5624	1970.0	6.29%	1856.9	6.22%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.184e+00	0.5755	1987.0	6.34%	1874.0	6.27%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.164e+00	0.5863	28.0	0.09%	24.1	0.08%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.145e+00	0.5963	454.0	1.45%	423.3	1.42%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.145e+00	0.5963	632.0	2.02%	591.5	1.98%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.133e+00	0.6012	1194.0	3.81%	1123.3	3.76%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.130e+00	0.6019	3997.0	12.75%	3784.6	12.67%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.129e+00	0.6019	204.0	0.65%	188.8	0.63%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.118e+00	0.6066	206.0	0.66%	190.7	0.64%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.114e+00	0.6084	411.0	1.31%	383.1	1.28%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.103e+00	0.6135	1460.0	4.66%	1376.0	4.61%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.098e+00	0.6154	130.0	0.41%	119.4	0.40%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.088e+00	0.6208	3777.0	12.05%	3577.6	11.98%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.078e+00	0.6257	1148.0	3.66%	1081.1	3.62%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.076e+00	0.6257	4603.0	14.69%	4363.5	14.61%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.072e+00	0.6275	1597.0	5.10%	1507.1	5.04%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.070e+00	0.6275	5307.0	16.93%	5033.3	16.85%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.050e+00	0.6387	3.0	0.01%	2.9	0.01%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.049e+00	0.6387	2265.0	7.23%	2142.1	7.17%
 Ik-1	NHTTGGGAATRCC	1e0	-1.049e+00	0.6387	31339.0	100.00%	29874.9	100.00%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.048e+00	0.6387	138.0	0.44%	127.5	0.43%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.025e+00	0.6505	94.0	0.30%	86.6	0.29%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.021e+00	0.6516	159.0	0.51%	147.9	0.49%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.020e+00	0.6516	5080.0	16.21%	4820.0	16.13%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-1.019e+00	0.6516	4361.0	13.92%	4136.3	13.85%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.908e-01	0.6682	4127.0	13.17%	3915.4	13.11%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-9.875e-01	0.6692	2884.0	9.20%	2733.8	9.15%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.839e-01	0.6704	116.0	0.37%	107.9	0.36%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-9.702e-01	0.6784	1789.0	5.71%	1693.6	5.67%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-9.604e-01	0.6839	224.0	0.71%	209.2	0.70%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.527e-01	0.6880	4.0	0.01%	3.8	0.01%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.209e-01	0.7089	60.0	0.19%	55.4	0.19%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-8.966e-01	0.7251	63.0	0.20%	58.4	0.20%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e0	-8.759e-01	0.7390	2318.0	7.40%	2200.2	7.36%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.716e-01	0.7408	363.0	1.16%	342.6	1.15%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-8.657e-01	0.7439	404.0	1.29%	381.9	1.28%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.530e-01	0.7521	141.0	0.45%	132.4	0.44%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-8.502e-01	0.7529	1356.0	4.33%	1286.3	4.31%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-8.481e-01	0.7531	870.0	2.78%	824.1	2.76%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-8.439e-01	0.7550	3514.0	11.21%	3340.9	11.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.393e-01	0.7572	2811.0	8.97%	2671.8	8.94%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-8.328e-01	0.7608	21.0	0.07%	19.2	0.06%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-8.273e-01	0.7636	185.0	0.59%	174.3	0.58%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-8.200e-01	0.7679	543.0	1.73%	514.3	1.72%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.195e-01	0.7679	22.0	0.07%	20.4	0.07%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-8.195e-01	0.7679	22.0	0.07%	20.3	0.07%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-8.180e-01	0.7679	285.0	0.91%	269.4	0.90%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-8.103e-01	0.7701	3304.0	10.54%	3142.4	10.52%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.954e-01	0.7802	24.0	0.08%	22.1	0.07%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.839e-01	0.7879	1513.0	4.83%	1438.2	4.81%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-7.715e-01	0.7964	1796.0	5.73%	1708.1	5.72%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.700e-01	0.7964	242.0	0.77%	229.4	0.77%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.694e-01	0.7964	364.0	1.16%	345.9	1.16%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-7.692e-01	0.7964	303.0	0.97%	287.5	0.96%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-7.622e-01	0.7984	1952.0	6.23%	1857.9	6.22%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.552e-01	0.8026	4814.0	15.36%	4584.6	15.35%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-7.509e-01	0.8047	147.0	0.47%	139.0	0.47%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-7.503e-01	0.8047	2851.0	9.10%	2714.8	9.09%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.396e-01	0.8111	858.0	2.74%	816.0	2.73%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.369e-01	0.8119	650.0	2.07%	618.1	2.07%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-7.280e-01	0.8178	845.0	2.70%	804.6	2.69%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.258e-01	0.8182	279.0	0.89%	266.0	0.89%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.255e-01	0.8182	300.0	0.96%	285.8	0.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.067e-01	0.8312	34.0	0.11%	32.8	0.11%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.026e-01	0.8332	1332.0	4.25%	1269.9	4.25%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.998e-01	0.8342	14.0	0.04%	14.0	0.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.881e-01	0.8426	981.0	3.13%	935.4	3.13%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.880e-01	0.8426	166.0	0.53%	158.9	0.53%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.860e-01	0.8426	7621.0	24.32%	7265.1	24.32%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-6.810e-01	0.8444	492.0	1.57%	469.8	1.57%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-6.761e-01	0.8471	538.0	1.72%	513.5	1.72%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.685e-01	0.8521	40.0	0.13%	38.8	0.13%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-6.647e-01	0.8540	174.0	0.56%	166.2	0.56%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-6.641e-01	0.8540	262.0	0.84%	250.5	0.84%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-6.502e-01	0.8636	3262.0	10.41%	3112.9	10.42%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-6.457e-01	0.8661	535.0	1.71%	511.2	1.71%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-6.431e-01	0.8669	2451.0	7.82%	2339.9	7.83%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.331e-01	0.8742	5554.0	17.72%	5299.6	17.74%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.237e-01	0.8810	1189.0	3.79%	1136.0	3.80%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-6.228e-01	0.8810	10393.0	33.16%	9914.5	33.19%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.150e-01	0.8858	25.0	0.08%	24.6	0.08%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.902e-01	0.9066	57.0	0.18%	55.6	0.19%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-5.854e-01	0.9095	757.0	2.42%	725.9	2.43%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-5.737e-01	0.9187	9713.0	30.99%	9271.7	31.04%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-5.678e-01	0.9227	3390.0	10.82%	3241.0	10.85%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.660e-01	0.9228	10055.0	32.08%	9598.3	32.13%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-5.648e-01	0.9228	91.0	0.29%	88.3	0.30%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.636e-01	0.9228	36.0	0.11%	35.2	0.12%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.604e-01	0.9234	2411.0	7.69%	2306.7	7.72%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.469e-01	0.9345	70.0	0.22%	68.1	0.23%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.409e-01	0.9386	2462.0	7.86%	2356.0	7.89%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-5.408e-01	0.9386	253.0	0.81%	244.9	0.82%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.352e-01	0.9410	44.0	0.14%	43.4	0.15%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-5.337e-01	0.9410	207.0	0.66%	200.0	0.67%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.197e-01	0.9527	413.0	1.32%	398.5	1.33%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.169e-01	0.9538	50.0	0.16%	49.3	0.16%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-5.139e-01	0.9552	4478.0	14.29%	4283.6	14.34%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.132e-01	0.9552	442.0	1.41%	426.9	1.43%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-5.128e-01	0.9552	705.0	2.25%	678.5	2.27%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-5.110e-01	0.9552	1126.0	3.59%	1081.5	3.62%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-5.109e-01	0.9552	468.0	1.49%	451.0	1.51%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.102e-01	0.9552	8.0	0.03%	8.9	0.03%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.092e-01	0.9552	9.0	0.03%	9.1	0.03%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.067e-01	0.9552	447.0	1.43%	431.6	1.44%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-5.063e-01	0.9552	11.0	0.04%	11.3	0.04%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-5.049e-01	0.9552	143.0	0.46%	139.7	0.47%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-4.962e-01	0.9571	356.0	1.14%	344.3	1.15%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.960e-01	0.9571	3.0	0.01%	3.3	0.01%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-4.930e-01	0.9571	59.0	0.19%	58.6	0.20%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-4.858e-01	0.9625	1801.0	5.75%	1728.8	5.79%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-4.809e-01	0.9657	997.0	3.18%	959.7	3.21%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-4.789e-01	0.9662	65.0	0.21%	64.7	0.22%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-4.745e-01	0.9690	2206.0	7.04%	2116.1	7.08%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-4.744e-01	0.9690	26.0	0.08%	26.5	0.09%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.722e-01	0.9690	1844.0	5.88%	1770.2	5.93%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.701e-01	0.9690	69.0	0.22%	68.3	0.23%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-4.696e-01	0.9690	162.0	0.52%	159.0	0.53%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-4.669e-01	0.9690	2127.0	6.79%	2041.3	6.83%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.648e-01	0.9694	221.0	0.71%	215.8	0.72%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-4.628e-01	0.9699	407.0	1.30%	394.5	1.32%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-4.623e-01	0.9699	1997.0	6.37%	1917.9	6.42%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.605e-01	0.9699	107.0	0.34%	105.9	0.35%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-4.509e-01	0.9769	519.0	1.66%	502.7	1.68%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.463e-01	0.9800	81.0	0.26%	80.2	0.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.375e-01	0.9871	45.0	0.14%	45.3	0.15%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.347e-01	0.9884	2526.0	8.06%	2425.2	8.12%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-4.312e-01	0.9903	1.0	0.00%	1.0	0.00%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.251e-01	0.9949	160.0	0.51%	157.2	0.53%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.207e-01	0.9978	55.0	0.18%	55.7	0.19%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-4.206e-01	0.9978	2391.0	7.63%	2297.9	7.69%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.150e-01	1.0000	198.0	0.63%	194.1	0.65%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-4.114e-01	1.0000	61.0	0.19%	61.4	0.21%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.043e-01	1.0000	6176.0	19.71%	5916.0	19.80%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-4.030e-01	1.0000	1266.0	4.04%	1221.4	4.09%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-3.979e-01	1.0000	2201.0	7.02%	2117.1	7.09%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-3.958e-01	1.0000	3017.0	9.63%	2898.6	9.70%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.919e-01	1.0000	391.0	1.25%	381.0	1.28%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.805e-01	1.0000	226.0	0.72%	222.1	0.74%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-3.744e-01	1.0000	1212.0	3.87%	1171.5	3.92%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-3.738e-01	1.0000	7242.0	23.11%	6938.6	23.23%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.722e-01	1.0000	90.0	0.29%	90.8	0.30%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.648e-01	1.0000	26.0	0.08%	28.0	0.09%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.621e-01	1.0000	20.0	0.06%	21.8	0.07%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-3.610e-01	1.0000	776.0	2.48%	753.9	2.52%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.598e-01	1.0000	18.0	0.06%	19.4	0.06%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.597e-01	1.0000	3929.0	12.54%	3774.4	12.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.592e-01	1.0000	2796.0	8.92%	2690.6	9.01%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.486e-01	1.0000	13.0	0.04%	14.2	0.05%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-3.473e-01	1.0000	874.0	2.79%	848.0	2.84%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.435e-01	1.0000	325.0	1.04%	319.1	1.07%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-3.419e-01	1.0000	64.0	0.20%	65.8	0.22%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-3.412e-01	1.0000	4139.0	13.21%	3977.0	13.31%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-3.371e-01	1.0000	363.0	1.16%	356.1	1.19%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.353e-01	1.0000	10.0	0.03%	11.3	0.04%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.257e-01	1.0000	314.0	1.00%	309.1	1.03%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.226e-01	1.0000	529.0	1.69%	517.1	1.73%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.226e-01	1.0000	5496.0	17.54%	5277.9	17.67%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-3.220e-01	1.0000	834.0	2.66%	811.8	2.72%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-3.150e-01	1.0000	2159.0	6.89%	2084.7	6.98%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-3.145e-01	1.0000	452.0	1.44%	443.4	1.48%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.124e-01	1.0000	2092.0	6.68%	2021.0	6.76%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-3.115e-01	1.0000	797.0	2.54%	776.1	2.60%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-3.074e-01	1.0000	1508.0	4.81%	1460.9	4.89%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.040e-01	1.0000	891.0	2.84%	867.0	2.90%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.032e-01	1.0000	160.0	0.51%	160.8	0.54%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.864e-01	1.0000	61.0	0.19%	63.6	0.21%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.837e-01	1.0000	32.0	0.10%	34.7	0.12%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-2.822e-01	1.0000	4803.0	15.33%	4620.4	15.47%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.781e-01	1.0000	567.0	1.81%	556.4	1.86%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.720e-01	1.0000	547.0	1.75%	537.0	1.80%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.709e-01	1.0000	204.0	0.65%	204.3	0.68%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-2.693e-01	1.0000	286.0	0.91%	285.0	0.95%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.674e-01	1.0000	21.0	0.07%	23.5	0.08%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.652e-01	1.0000	108.0	0.34%	110.8	0.37%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.626e-01	1.0000	113.0	0.36%	115.5	0.39%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-2.613e-01	1.0000	803.0	2.56%	785.4	2.63%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.557e-01	1.0000	1122.0	3.58%	1093.2	3.66%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-2.521e-01	1.0000	3970.0	12.67%	3827.0	12.81%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.496e-01	1.0000	138.0	0.44%	140.0	0.47%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-2.450e-01	1.0000	147.0	0.47%	149.1	0.50%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.420e-01	1.0000	843.0	2.69%	825.9	2.76%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.366e-01	1.0000	3.0	0.01%	4.4	0.01%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.366e-01	1.0000	3.0	0.01%	4.9	0.02%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-2.364e-01	1.0000	826.0	2.64%	809.1	2.71%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.363e-01	1.0000	379.0	1.21%	376.7	1.26%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-2.357e-01	1.0000	416.0	1.33%	412.8	1.38%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-2.314e-01	1.0000	99.0	0.32%	102.3	0.34%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.166e-01	1.0000	342.0	1.09%	341.8	1.14%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-2.109e-01	1.0000	2452.0	7.82%	2377.9	7.96%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.101e-01	1.0000	161.0	0.51%	164.1	0.55%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.094e-01	1.0000	830.0	2.65%	815.8	2.73%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-2.092e-01	1.0000	674.0	2.15%	664.4	2.22%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-2.090e-01	1.0000	164.0	0.52%	167.6	0.56%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.052e-01	1.0000	810.0	2.58%	796.9	2.67%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.987e-01	1.0000	601.0	1.92%	594.8	1.99%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.980e-01	1.0000	92.0	0.29%	96.0	0.32%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.979e-01	1.0000	95.0	0.30%	99.8	0.33%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-1.977e-01	1.0000	1158.0	3.70%	1133.5	3.79%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.963e-01	1.0000	109.0	0.35%	113.7	0.38%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.963e-01	1.0000	2.0	0.01%	3.1	0.01%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.960e-01	1.0000	111.0	0.35%	115.8	0.39%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.920e-01	1.0000	132.0	0.42%	136.4	0.46%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.879e-01	1.0000	1274.0	4.07%	1246.4	4.17%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.877e-01	1.0000	1246.0	3.98%	1219.7	4.08%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.859e-01	1.0000	228.0	0.73%	231.7	0.78%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.838e-01	1.0000	931.0	2.97%	915.3	3.06%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.835e-01	1.0000	336.0	1.07%	337.9	1.13%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.821e-01	1.0000	1575.0	5.03%	1537.1	5.15%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.789e-01	1.0000	584.0	1.86%	579.9	1.94%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.778e-01	1.0000	187.0	0.60%	191.2	0.64%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e0	-1.759e-01	1.0000	310.0	0.99%	312.7	1.05%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-1.735e-01	1.0000	3755.0	11.98%	3634.4	12.17%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.685e-01	1.0000	1041.0	3.32%	1023.5	3.43%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.679e-01	1.0000	102.0	0.33%	107.9	0.36%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.676e-01	1.0000	97.0	0.31%	102.3	0.34%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.659e-01	1.0000	430.0	1.37%	430.8	1.44%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.656e-01	1.0000	472.0	1.51%	471.7	1.58%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.651e-01	1.0000	3944.0	12.58%	3817.5	12.78%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-1.620e-01	1.0000	1899.0	6.06%	1852.9	6.20%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.583e-01	1.0000	3979.0	12.70%	3852.6	12.90%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.536e-01	1.0000	4004.0	12.78%	3877.9	12.98%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.530e-01	1.0000	1826.0	5.83%	1783.5	5.97%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.496e-01	1.0000	3195.0	10.19%	3101.8	10.38%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.477e-01	1.0000	48.0	0.15%	53.2	0.18%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.428e-01	1.0000	107.0	0.34%	113.4	0.38%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.384e-01	1.0000	84.0	0.27%	90.8	0.30%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.364e-01	1.0000	284.0	0.91%	289.2	0.97%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-1.356e-01	1.0000	1560.0	4.98%	1530.0	5.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.356e-01	1.0000	4.0	0.01%	6.1	0.02%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.339e-01	1.0000	37.0	0.12%	42.6	0.14%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.320e-01	1.0000	5041.0	16.09%	4877.9	16.33%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.309e-01	1.0000	1.0	0.00%	2.1	0.01%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-1.278e-01	1.0000	3470.0	11.07%	3370.2	11.28%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.236e-01	1.0000	156.0	0.50%	163.5	0.55%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.230e-01	1.0000	17.0	0.05%	21.5	0.07%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.221e-01	1.0000	184.0	0.59%	191.8	0.64%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.189e-01	1.0000	98.0	0.31%	105.6	0.35%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.170e-01	1.0000	232.0	0.74%	239.8	0.80%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.164e-01	1.0000	320.0	1.02%	326.0	1.09%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.150e-01	1.0000	85.0	0.27%	92.4	0.31%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.145e-01	1.0000	2382.0	7.60%	2326.4	7.79%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.120e-01	1.0000	1014.0	3.24%	1004.8	3.36%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.114e-01	1.0000	3.0	0.01%	5.8	0.02%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.071e-01	1.0000	174.0	0.56%	182.3	0.61%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.068e-01	1.0000	149.0	0.48%	158.0	0.53%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.055e-01	1.0000	494.0	1.58%	498.2	1.67%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.031e-01	1.0000	38.0	0.12%	44.1	0.15%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.994e-02	1.0000	901.0	2.88%	896.1	3.00%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-9.965e-02	1.0000	3478.0	11.10%	3385.8	11.33%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-9.515e-02	1.0000	86.0	0.27%	94.8	0.32%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-9.011e-02	1.0000	635.0	2.03%	638.2	2.14%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-8.995e-02	1.0000	3046.0	9.72%	2972.1	9.95%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-8.985e-02	1.0000	540.0	1.72%	545.2	1.83%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-8.798e-02	1.0000	1458.0	4.65%	1440.0	4.82%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-8.565e-02	1.0000	1376.0	4.39%	1360.7	4.55%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-8.459e-02	1.0000	105.0	0.34%	114.8	0.38%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.301e-02	1.0000	17.0	0.05%	22.5	0.08%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-8.216e-02	1.0000	97.0	0.31%	106.0	0.35%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.013e-02	1.0000	26.0	0.08%	33.0	0.11%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-7.897e-02	1.0000	2322.0	7.41%	2277.8	7.62%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-7.860e-02	1.0000	804.0	2.57%	805.1	2.69%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-7.709e-02	1.0000	56.0	0.18%	64.1	0.21%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-7.709e-02	1.0000	56.0	0.18%	64.1	0.21%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.513e-02	1.0000	1717.0	5.48%	1693.8	5.67%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-6.962e-02	1.0000	1954.0	6.24%	1924.1	6.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.949e-02	1.0000	649.0	2.07%	655.6	2.19%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-6.883e-02	1.0000	1643.0	5.24%	1624.0	5.44%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.776e-02	1.0000	4.0	0.01%	7.9	0.03%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-6.769e-02	1.0000	1055.0	3.37%	1052.5	3.52%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-6.711e-02	1.0000	671.0	2.14%	677.5	2.27%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.629e-02	1.0000	3512.0	11.21%	3429.8	11.48%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-6.572e-02	1.0000	13.0	0.04%	18.4	0.06%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-6.443e-02	1.0000	6968.0	22.23%	6750.8	22.60%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-6.426e-02	1.0000	20.0	0.06%	26.3	0.09%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-6.319e-02	1.0000	60.0	0.19%	69.8	0.23%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-6.291e-02	1.0000	1429.0	4.56%	1417.9	4.75%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.267e-02	1.0000	2624.0	8.37%	2574.4	8.62%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-6.252e-02	1.0000	552.0	1.76%	561.1	1.88%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-6.230e-02	1.0000	267.0	0.85%	279.3	0.93%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.202e-02	1.0000	721.0	2.30%	727.8	2.44%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-6.067e-02	1.0000	28.0	0.09%	35.2	0.12%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-6.036e-02	1.0000	1201.0	3.83%	1196.7	4.01%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.007e-02	1.0000	176.0	0.56%	188.5	0.63%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-5.879e-02	1.0000	532.0	1.70%	542.5	1.82%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-5.626e-02	1.0000	564.0	1.80%	574.0	1.92%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.273e-02	1.0000	1284.0	4.10%	1279.9	4.28%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-5.161e-02	1.0000	738.0	2.35%	746.8	2.50%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-5.036e-02	1.0000	2977.0	9.50%	2920.3	9.78%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-4.766e-02	1.0000	342.0	1.09%	356.1	1.19%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.746e-02	1.0000	227.0	0.72%	241.3	0.81%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-4.666e-02	1.0000	4175.0	13.32%	4077.7	13.65%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-4.607e-02	1.0000	3038.0	9.69%	2981.8	9.98%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-4.547e-02	1.0000	3047.0	9.72%	2990.6	10.01%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-4.383e-02	1.0000	989.0	3.16%	994.9	3.33%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.371e-02	1.0000	457.0	1.46%	471.9	1.58%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.318e-02	1.0000	20.0	0.06%	27.5	0.09%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-4.261e-02	1.0000	326.0	1.04%	341.7	1.14%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-4.183e-02	1.0000	2025.0	6.46%	2003.3	6.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.131e-02	1.0000	37.0	0.12%	46.8	0.16%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-4.071e-02	1.0000	217.0	0.69%	232.1	0.78%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.025e-02	1.0000	3731.0	11.91%	3653.2	12.23%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-3.776e-02	1.0000	728.0	2.32%	740.2	2.48%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-3.724e-02	1.0000	1223.0	3.90%	1225.1	4.10%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.619e-02	1.0000	164.0	0.52%	179.0	0.60%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-3.567e-02	1.0000	17.0	0.05%	25.0	0.08%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.532e-02	1.0000	1298.0	4.14%	1299.6	4.35%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-3.483e-02	1.0000	91.0	0.29%	104.3	0.35%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.263e-02	1.0000	139.0	0.44%	154.3	0.52%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-3.188e-02	1.0000	250.0	0.80%	267.8	0.90%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-3.135e-02	1.0000	740.0	2.36%	754.4	2.53%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-2.827e-02	1.0000	116.0	0.37%	132.0	0.44%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.706e-02	1.0000	26.0	0.08%	35.4	0.12%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.678e-02	1.0000	1931.0	6.16%	1920.5	6.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.655e-02	1.0000	561.0	1.79%	579.2	1.94%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-2.617e-02	1.0000	43.0	0.14%	54.2	0.18%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-2.575e-02	1.0000	165.0	0.53%	182.3	0.61%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.542e-02	1.0000	1205.0	3.85%	1213.4	4.06%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-2.522e-02	1.0000	53.0	0.17%	65.7	0.22%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.505e-02	1.0000	13.0	0.04%	20.3	0.07%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-2.499e-02	1.0000	17811.0	56.83%	17142.0	57.38%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.419e-02	1.0000	257.0	0.82%	276.1	0.92%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.412e-02	1.0000	192.0	0.61%	210.6	0.71%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-2.337e-02	1.0000	146.0	0.47%	163.3	0.55%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-2.152e-02	1.0000	5300.0	16.91%	5182.0	17.35%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-2.114e-02	1.0000	777.0	2.48%	795.7	2.66%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.999e-02	1.0000	657.0	2.10%	677.7	2.27%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.883e-02	1.0000	15.0	0.05%	23.4	0.08%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.868e-02	1.0000	141.0	0.45%	160.0	0.54%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-1.820e-02	1.0000	490.0	1.56%	512.7	1.72%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.820e-02	1.0000	4195.0	13.39%	4120.3	13.79%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.748e-02	1.0000	91.0	0.29%	107.9	0.36%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.739e-02	1.0000	1364.0	4.35%	1374.0	4.60%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-1.707e-02	1.0000	19.0	0.06%	28.5	0.10%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.671e-02	1.0000	153.0	0.49%	172.2	0.58%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.613e-02	1.0000	2291.0	7.31%	2279.4	7.63%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-1.540e-02	1.0000	1870.0	5.97%	1870.6	6.26%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.532e-02	1.0000	1148.0	3.66%	1165.0	3.90%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.452e-02	1.0000	872.0	2.78%	893.7	2.99%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-1.445e-02	1.0000	433.0	1.38%	457.4	1.53%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.395e-02	1.0000	22.0	0.07%	32.3	0.11%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.388e-02	1.0000	53.0	0.17%	67.6	0.23%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.379e-02	1.0000	4178.0	13.33%	4110.5	13.76%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.327e-02	1.0000	125.0	0.40%	144.8	0.48%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.314e-02	1.0000	1596.0	5.09%	1605.8	5.37%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.287e-02	1.0000	21.0	0.07%	31.0	0.10%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.264e-02	1.0000	86.0	0.27%	103.1	0.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.228e-02	1.0000	642.0	2.05%	667.3	2.23%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.114e-02	1.0000	309.0	0.99%	334.2	1.12%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.177e-03	1.0000	359.0	1.15%	386.2	1.29%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.616e-03	1.0000	27.0	0.09%	39.9	0.13%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.292e-03	1.0000	91.0	0.29%	110.4	0.37%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-8.200e-03	1.0000	31040.0	99.05%	29626.4	99.17%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-8.100e-03	1.0000	15755.0	50.27%	15221.1	50.95%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-7.844e-03	1.0000	1616.0	5.16%	1632.4	5.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-7.238e-03	1.0000	2433.0	7.76%	2431.2	8.14%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-7.211e-03	1.0000	3188.0	10.17%	3165.8	10.60%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-7.172e-03	1.0000	312.0	1.00%	340.7	1.14%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-7.131e-03	1.0000	226.0	0.72%	252.9	0.85%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.018e-03	1.0000	715.0	2.28%	745.5	2.50%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.705e-03	1.0000	794.0	2.53%	824.6	2.76%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.391e-03	1.0000	2357.0	7.52%	2359.2	7.90%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.340e-03	1.0000	206.0	0.66%	232.4	0.78%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-6.333e-03	1.0000	322.0	1.03%	351.7	1.18%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-6.207e-03	1.0000	315.0	1.01%	344.1	1.15%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e0	-5.571e-03	1.0000	505.0	1.61%	537.8	1.80%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.566e-03	1.0000	39.0	0.12%	54.1	0.18%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.223e-03	1.0000	1748.0	5.58%	1767.4	5.92%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.151e-03	1.0000	667.0	2.13%	700.2	2.34%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-5.046e-03	1.0000	13.0	0.04%	24.0	0.08%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-4.859e-03	1.0000	152.0	0.49%	177.9	0.60%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-4.394e-03	1.0000	306.0	0.98%	337.4	1.13%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-4.372e-03	1.0000	3.0	0.01%	9.4	0.03%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-4.173e-03	1.0000	2430.0	7.75%	2437.9	8.16%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-3.851e-03	1.0000	3916.0	12.50%	3883.1	13.00%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-3.845e-03	1.0000	6785.0	21.65%	6654.7	22.28%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-3.808e-03	1.0000	357.0	1.14%	390.2	1.31%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.290e-03	1.0000	2623.0	8.37%	2629.7	8.80%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.159e-03	1.0000	468.0	1.49%	504.4	1.69%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-2.157e-03	1.0000	487.0	1.55%	526.0	1.76%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-2.111e-03	1.0000	91.0	0.29%	115.9	0.39%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.083e-03	1.0000	3513.0	11.21%	3503.1	11.73%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.954e-03	1.0000	1418.0	4.52%	1455.5	4.87%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-1.803e-03	1.0000	367.0	1.17%	405.1	1.36%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-1.754e-03	1.0000	2982.0	9.52%	2989.4	10.01%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.640e-03	1.0000	6850.0	21.86%	6736.9	22.55%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.629e-03	1.0000	2989.0	9.54%	2997.2	10.03%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.417e-03	1.0000	433.0	1.38%	474.2	1.59%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.393e-03	1.0000	659.0	2.10%	703.1	2.35%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.386e-03	1.0000	1069.0	3.41%	1113.0	3.73%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.373e-03	1.0000	423.0	1.35%	464.2	1.55%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.213e-03	1.0000	241.0	0.77%	277.0	0.93%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.212e-03	1.0000	1681.0	5.36%	1720.9	5.76%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.197e-03	1.0000	544.0	1.74%	588.1	1.97%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.168e-03	1.0000	7.0	0.02%	17.8	0.06%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.072e-03	1.0000	328.0	1.05%	369.0	1.24%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.064e-03	1.0000	901.0	2.88%	948.8	3.18%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-1.040e-03	1.0000	246.0	0.78%	283.9	0.95%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-8.830e-04	1.0000	477.0	1.52%	522.3	1.75%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-8.780e-04	1.0000	3604.0	11.50%	3606.6	12.07%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-8.440e-04	1.0000	4410.0	14.07%	4390.6	14.70%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-7.850e-04	1.0000	488.0	1.56%	535.0	1.79%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.650e-04	1.0000	10.0	0.03%	22.9	0.08%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.620e-04	1.0000	235.0	0.75%	273.3	0.91%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.050e-04	1.0000	77.0	0.25%	103.8	0.35%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-6.940e-04	1.0000	246.0	0.78%	285.7	0.96%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-6.680e-04	1.0000	6242.0	19.92%	6169.0	20.65%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-6.580e-04	1.0000	4283.0	13.67%	4271.1	14.30%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-6.140e-04	1.0000	199.0	0.63%	236.5	0.79%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-5.930e-04	1.0000	59.0	0.19%	83.7	0.28%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-4.990e-04	1.0000	378.0	1.21%	425.0	1.42%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-4.950e-04	1.0000	1422.0	4.54%	1474.9	4.94%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-4.910e-04	1.0000	16.0	0.05%	31.0	0.10%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-4.710e-04	1.0000	2336.0	7.45%	2376.5	7.95%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-4.380e-04	1.0000	455.0	1.45%	504.6	1.69%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-4.320e-04	1.0000	60.0	0.19%	85.9	0.29%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-3.090e-04	1.0000	1146.0	3.66%	1204.1	4.03%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-3.080e-04	1.0000	578.0	1.84%	632.8	2.12%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-2.920e-04	1.0000	406.0	1.30%	456.3	1.53%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-2.050e-04	1.0000	2700.0	8.62%	2744.3	9.19%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.030e-04	1.0000	141.0	0.45%	178.6	0.60%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.770e-04	1.0000	4557.0	14.54%	4559.1	15.26%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.570e-04	1.0000	1091.0	3.48%	1155.5	3.87%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.550e-04	1.0000	418.0	1.33%	472.2	1.58%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.550e-04	1.0000	1051.0	3.35%	1115.9	3.74%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.300e-04	1.0000	284.0	0.91%	333.2	1.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.190e-04	1.0000	114.0	0.36%	150.8	0.50%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.090e-04	1.0000	547.0	1.75%	607.1	2.03%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-8.100e-05	1.0000	380.0	1.21%	436.0	1.46%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-7.900e-05	1.0000	1.0	0.00%	9.3	0.03%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.300e-05	1.0000	278.0	0.89%	330.5	1.11%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.800e-05	1.0000	112.0	0.36%	150.1	0.50%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-5.800e-05	1.0000	120.0	0.38%	159.3	0.53%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-5.600e-05	1.0000	764.0	2.44%	833.9	2.79%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.600e-05	1.0000	192.0	0.61%	240.9	0.81%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-2.400e-05	1.0000	107.0	0.34%	147.1	0.49%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-1.600e-05	1.0000	1405.0	4.48%	1490.0	4.99%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-1.500e-05	1.0000	4939.0	15.76%	4968.3	16.63%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.400e-05	1.0000	257.0	0.82%	314.9	1.05%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.100e-05	1.0000	460.0	1.47%	530.5	1.78%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-7.000e-06	1.0000	630.0	2.01%	709.4	2.37%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.000e-06	1.0000	131.0	0.42%	178.5	0.60%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-6.000e-06	1.0000	2940.0	9.38%	3023.2	10.12%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.000e-06	1.0000	908.0	2.90%	996.4	3.34%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-5.000e-06	1.0000	40.0	0.13%	71.3	0.24%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.000e-06	1.0000	96.0	0.31%	140.0	0.47%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.000e-06	1.0000	723.0	2.31%	810.0	2.71%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-3.000e-06	1.0000	64.0	0.20%	102.0	0.34%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-2.000e-06	1.0000	3992.0	12.74%	4068.2	13.62%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.000e-06	1.0000	175.0	0.56%	233.3	0.78%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.000e-06	1.0000	1463.0	4.67%	1570.7	5.26%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-1.000e-06	1.0000	736.0	2.35%	831.7	2.78%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.000e-06	1.0000	345.0	1.10%	422.7	1.41%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.000e-06	1.0000	110.0	0.35%	161.7	0.54%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-0.000e+00	1.0000	3.0	0.01%	19.1	0.06%
Tal1	CATCTG	1e0	-0.000e+00	1.0000	768.0	2.45%	872.7	2.92%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	2585.0	8.25%	2708.9	9.07%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-0.000e+00	1.0000	919.0	2.93%	1037.0	3.47%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-0.000e+00	1.0000	8831.0	28.18%	8829.9	29.56%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-0.000e+00	1.0000	36.0	0.11%	75.3	0.25%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-0.000e+00	1.0000	979.0	3.12%	1109.6	3.71%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-0.000e+00	1.0000	382.0	1.22%	483.1	1.62%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	46.0	0.15%	96.6	0.32%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-0.000e+00	1.0000	31.0	0.10%	79.9	0.27%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-0.000e+00	1.0000	916.0	2.92%	1079.9	3.61%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-0.000e+00	1.0000	9411.0	30.03%	9544.2	31.95%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-0.000e+00	1.0000	11.0	0.04%	58.3	0.20%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	2.4	0.01%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
SeqBias: CA-repeat	CACACACACA	1e0	0.000e+00	1.0000	11504.0	36.71%	11760.0	39.36%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	0.000e+00	1.0000	7.0	0.02%	57.4	0.19%