Information for 20-CGACGCAT (Motif 40)

A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C A C T G A C G T A G T C A C T G
p-value:1e-8
log p-value:-1.849e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.9 +/- 24.6bp
Average Position of motif in Background25.1 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FHL1/MA0295.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGACGCAT-
-GACGCAAA
 A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T A C G T
A C G T A T C G C G T A A G T C A C T G A G T C C G T A T G C A C G T A

Rbm4.3(RRM)/Danio_rerio-RNCMPT00248-PBM/HughesRNA

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CGACGCAT
NACGACGA--
 A C G T A C G T A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
C T G A C T G A A G T C A C T G C T G A A G T C A C T G G T C A A C G T A C G T

RSF1(RRM)/Drosophila_melanogaster-RNCMPT00061-PBM/HughesRNA

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CGACGCAT
ACGACGA--
 A C G T A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
C G T A A G T C A C T G C G T A A G T C A C T G T C G A A C G T A C G T

MBP1(MacIsaac)/Yeast

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGACGCAT
-GACGCGT
 A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
A C G T C T A G G C T A G A T C T C A G A G T C T C A G A G C T

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CGACGCAT
-GACGCGT
 A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
A C G T T C A G C G T A A T G C C T A G A G T C A C T G G C A T

PB0179.1_Sp100_2/Jaspar

Match Rank:6
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------CGACGCAT
NNTTTANNCGACGNA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A A C G T

SRSF7(RRM,Znf)/Homo_sapiens-RNCMPT00073-PBM/HughesRNA

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CGACGCAT
GACGACGN--
 A C G T A C G T A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
C T A G C G T A A G T C A C T G C G T A A G T C C T A G C T A G A C G T A C G T

Foxn1/MA1684.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CGACGCAT
GGACGC--
 A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
C T A G A C T G C G T A G T A C A C T G A G T C A C G T A C G T

JUN::JUNB/MA1132.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGACGCAT
GATGACTCAT
 A C G T A C G T A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
C A T G T C G A C A G T A C T G C T G A A T G C C A G T G T A C G C T A G A C T

Mad/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CGACGCAT
CGGCCGACGC--
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A G T C A C T G A G T C C G T A A C G T
A T G C A C G T C T A G T A C G A G T C A C T G C A G T A T G C C T A G G A T C A C G T A C G T