Information for 3-CCACATTTTT (Motif 3)

A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
Reverse Opposite:
C G T A C G T A C T G A C G T A C G T A A C G T A C T G G C A T A C T G T A C G
p-value:1e-59
log p-value:-1.375e+02
Information Content per bp:1.742
Number of Target Sequences with motif643.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif299.5
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets48.5 +/- 25.5bp
Average Position of motif in Background51.6 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lm_0212(RRM)/Leishmania_major-RNCMPT00212-PBM/HughesRNA

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:CCACATTTTT
--NCATTTT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

twi/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CCACATTTTT
-CACATGT--
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T A G T C C G T A A G T C C G T A A C G T C T A G A G C T A C G T A C G T

TEC1(MacIsaac)/Yeast

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CCACATTTTT
-CACATTCT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T A G T C C T G A A G T C G T C A A G C T A G C T A G T C A G C T A C G T

At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CCACATTTTT
-CACTTTTT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T G A T C C T G A A G T C A G C T A C G T A C G T A C G T A C G T A C G T

CDF3/MA0974.2/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCACATTTTT-
TNCACTTTTTNN
 A C G T A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T A C G T
C G A T C G A T G A T C T C G A G T A C G A C T G A C T G A C T G C A T G C A T G C T A G C A T

AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCACATTTTT
-CHCCTTTT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T A T G C G T A C A G T C A G T C A C G T A C G T C G A T A C G T A C G T

DOF2.5/MA0977.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCACATTTTT
-CACTTTTT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T G A T C T C G A G T A C A G C T G A C T G C A T G C A T G A C T A C G T

MET31/Literature(Harbison)/Yeast

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCACATTTTT
CCACAGTTT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T

MET32/Literature(Harbison)/Yeast

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCACATTTTT
CCACAGTTT-
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T

CPEB2(RRM)/Homo_sapiens-RNCMPT00012-PBM/HughesRNA

Match Rank:10
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCACATTTTT
---CTTTTTT
 A T G C A G T C C G T A A G T C G T C A A C G T C G A T A G C T C G A T G C A T
A C G T A C G T A C G T A G T C G C A T G C A T A C G T A C G T A C G T A C G T